Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR4F5	79501	broad.mit.edu	37	1	69517	69517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:69517G>A	uc001aal.1	+	1	427	c.427G>A	c.(427-429)GGA>AGA	p.G143R		NM_001005484	NP_001005484	Q8NH21	OR4F5_HUMAN	olfactory receptor, family 4, subfamily F,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;3.48e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.21e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		TGTCACATGGGGAATTGGCTT	0.473													40	125					0	0	0.003610	0	0
TTLL10	254173	broad.mit.edu	37	1	1117796	1117796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:1117796G>A	uc001acy.2	+	10	1037	c.886G>A	c.(886-888)GAG>AAG	p.E296K	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Missense_Mutation_p.E296K|TTLL10_uc001acz.1_Missense_Mutation_p.E223K	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	296	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		CCTCAAACACGAGAGAGAGGC	0.453													27	21					0	0	0.002096	0	0
ACAP3	116983	broad.mit.edu	37	1	1231242	1231243	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:1231242_1231243GG>AA	uc001aeb.2	-	18	1652_1653	c.1578_1579CC>TT	c.(1576-1581)GCCCTG>GCTTTG	p.526_527AL>AL	ACAP3_uc001ady.2_Silent_p.256_257AL>AL|ACAP3_uc001aea.2_Silent_p.484_485AL>AL	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	526_527					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						GGGGCCTCCAGGGCTGGTGCCA	0.649													13	9					0	0	0.004672	0	0
MXRA8	54587	broad.mit.edu	37	1	1289285	1289286	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:1289285_1289286CC>TT	uc001aew.2	-	9	1276_1277	c.1245_1246GG>AA	c.(1243-1248)AAGGAG>AAAAAG	p.E416K	MXRA8_uc001aex.3_Missense_Mutation_p.E422K|MXRA8_uc001aey.3_Missense_Mutation_p.E416K|MXRA8_uc010nyl.1_Missense_Mutation_p.E416K|MXRA8_uc001aez.2_Missense_Mutation_p.E315K|MXRA8_uc001afa.2_Missense_Mutation_p.E407K	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	416	Cytoplasmic (Potential).					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCCGCCCTCTCCTTCAGGATGT	0.649													11	9					0	0	0.004672	0	0
ATAD3B	83858	broad.mit.edu	37	1	1430980	1430980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:1430980C>T	uc001afv.2	+	16	1831	c.1730C>T	c.(1729-1731)CCT>CTT	p.P577L	ATAD3B_uc001afx.2_Missense_Mutation_p.P531L|ATAD3B_uc001afy.2_Missense_Mutation_p.P130L	NM_031921	NP_114127	Q5T9A4	ATD3B_HUMAN	AAA-ATPase  TOB3	577							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GCGGAGGGGCCTGGGCGCGGG	0.672													25	10					0	0	0.003330	0	0
PRKCZ	5590	broad.mit.edu	37	1	2103820	2103820	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:2103820G>A	uc001aiq.2	+	13	1439	c.1278G>A	c.(1276-1278)GAG>GAA	p.E426E	PRKCZ_uc001air.2_Silent_p.E243E|PRKCZ_uc010nyw.1_Silent_p.E322E|PRKCZ_uc001ais.2_Silent_p.E243E|PRKCZ_uc009vla.2_Silent_p.E250E|PRKCZ_uc010nyx.1_RNA|PRKCZ_uc001ait.2_Silent_p.E274E	NM_002744	NP_002735	Q05513	KPCZ_HUMAN	protein kinase C, zeta isoform 1	426	Protein kinase.				anti-apoptosis|intracellular signal transduction|negative regulation of insulin receptor signaling pathway|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein complex assembly|peptidyl-serine phosphorylation|platelet activation	endosome	ATP binding|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(2)	6	all_cancers(77;0.000177)|all_epithelial(69;6.41e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;2.96e-37)|OV - Ovarian serous cystadenocarcinoma(86;3.3e-23)|GBM - Glioblastoma multiforme(42;2.85e-08)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.00294)|BRCA - Breast invasive adenocarcinoma(365;0.00493)|STAD - Stomach adenocarcinoma(132;0.00669)|KIRC - Kidney renal clear cell carcinoma(229;0.0411)|Lung(427;0.213)		TGCGGGGAGAGGAGTACGGTG	0.642													4	4					0	0	0.000248	0	0
PRDM16	63976	broad.mit.edu	37	1	3319459	3319459	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:3319459T>A	uc001akf.2	+	6	861	c.781T>A	c.(781-783)TAC>AAC	p.Y261N	PRDM16_uc001akc.2_Missense_Mutation_p.Y261N|PRDM16_uc001akd.2_Missense_Mutation_p.Y261N|PRDM16_uc001ake.2_Missense_Mutation_p.Y261N|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	261					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GGCTGCGCTCTACGAGGGCCT	0.637			T	EVI1	MDS|AML								17	5					0	0	0.007413	0	0
GPR153	387509	broad.mit.edu	37	1	6314159	6314159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:6314159C>T	uc001amp.1	-	3	665	c.405G>A	c.(403-405)TGG>TGA	p.W135*		NM_207370	NP_997253	Q6NV75	GP153_HUMAN	G protein-coupled receptor 153	135	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	Ovarian(185;0.0634)	all_cancers(23;8.07e-33)|all_epithelial(116;4.45e-18)|all_lung(118;1.09e-06)|all_neural(13;3.68e-06)|Lung NSC(185;1.52e-05)|all_hematologic(16;2.39e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.91e-37)|GBM - Glioblastoma multiforme(13;4.87e-29)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;1.33e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.246)		AGGACACCATCCAGATACCCA	0.622													20	12					0	0	0.002299	0	0
ERRFI1	54206	broad.mit.edu	37	1	8073389	8073389	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:8073389G>A	uc001aoz.2	-	4	1519	c.1270C>T	c.(1270-1272)CAG>TAG	p.Q424*		NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	424					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		GGTAATGGCTGGATTTGGGCG	0.423													25	15					0	0	0.002780	0	0
PIK3CD	5293	broad.mit.edu	37	1	9784371	9784371	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:9784371T>A	uc001aqb.3	+	22	2964	c.2756T>A	c.(2755-2757)TTC>TAC	p.F919Y	PIK3CD_uc010oaf.1_Missense_Mutation_p.F918Y|PIK3CD_uc001aqe.3_Missense_Mutation_p.F943Y	NM_005026	NP_005017	O00329	PK3CD_HUMAN	catalytic phosphatidylinositol 3-kinase delta	919	PI3K/PI4K.				phosphatidylinositol-mediated signaling|protein phosphorylation	phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(4)|skin(2)|central_nervous_system(1)	7	all_lung(157;0.222)	all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0231)|Colorectal(212;7.52e-08)|COAD - Colon adenocarcinoma(227;1.78e-05)|Kidney(185;0.000322)|KIRC - Kidney renal clear cell carcinoma(229;0.00114)|BRCA - Breast invasive adenocarcinoma(304;0.0021)|STAD - Stomach adenocarcinoma(132;0.00395)|READ - Rectum adenocarcinoma(331;0.0419)		CTGGGGAATTTCAAGACCAAG	0.498													29	42					0	0	0.002836	0	0
KIF1B	23095	broad.mit.edu	37	1	10381874	10381874	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:10381874C>T	uc001aqx.3	+	24	2519	c.2317C>T	c.(2317-2319)CTA>TTA	p.L773L	KIF1B_uc001aqw.3_Silent_p.L727L|KIF1B_uc001aqy.2_Silent_p.L747L|KIF1B_uc001aqz.2_Silent_p.L773L|KIF1B_uc001ara.2_Silent_p.L733L|KIF1B_uc001arb.2_Silent_p.L759L	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	773					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		TGCCGTGTACCTAAAGGAGGC	0.517													14	28					0	0	0.002450	0	0
PGD	5226	broad.mit.edu	37	1	10479520	10479520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:10479520C>T	uc001arc.2	+	12	1346	c.1256C>T	c.(1255-1257)CCC>CTC	p.P419L	PGD_uc001ard.2_Missense_Mutation_p.P339L|PGD_uc010oak.1_Missense_Mutation_p.P397L|PGD_uc010oal.1_Missense_Mutation_p.P406L	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	419					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GCTGGCATTCCCATGCCCTGT	0.582													24	40					0	0	0.002780	0	0
CASZ1	54897	broad.mit.edu	37	1	10718634	10718634	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:10718634C>T	uc001aro.2	-	7	1661	c.1341_splice	c.e7-1	p.K447_splice	CASZ1_uc001arp.1_Splice_Site_p.K447_splice|CASZ1_uc009vmx.2_Splice_Site_p.K471_splice|CASZ1_uc001arq.1_Intron	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CAGTCCGTTCCTGGCAAGAGA	0.607													5	15					0	0	0.000602	0	0
FBXO44	93611	broad.mit.edu	37	1	11718436	11718436	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:11718436C>T	uc001asm.2	+	3	504	c.378C>T	c.(376-378)TTC>TTT	p.F126F	FBXO44_uc001ask.2_Intron|FBXO44_uc010oaq.1_Silent_p.F126F|FBXO44_uc001asl.2_Silent_p.F126F|FBXO44_uc001asn.2_Intron|FBXO44_uc010oar.1_Intron|FBXO44_uc010oas.1_Intron	NM_033182	NP_149438	Q9H4M3	FBX44_HUMAN	F-box protein 44 isoform 1	126	FBA.				protein catabolic process	SCF ubiquitin ligase complex	protein binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.41e-06)|COAD - Colon adenocarcinoma(227;0.000255)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000758)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		AGAAATACTTCGTTACTTCAT	0.527													23	48					0	0	0.002780	0	0
PLOD1	5351	broad.mit.edu	37	1	12012792	12012793	+	Splice_Site	DNP	GG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12012792_12012793GG>AT	uc001atm.2	+	5	670	c.579_splice	c.e5+1	p.R193_splice	PLOD1_uc010obb.1_Splice_Site_p.R240_splice	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor						epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	CGGAGAAGAGGGTAAGAGGCAG	0.619													20	19					0	0	0.004672	0	0
TNFRSF8	943	broad.mit.edu	37	1	12198328	12198328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12198328G>A	uc001atq.2	+	14	1600	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	TNFRSF8_uc010obc.1_Missense_Mutation_p.E348K|TNFRSF8_uc001atr.2_5'UTR|TNFRSF8_uc001ats.2_Intron	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	460	Cytoplasmic (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		CGTCGCGGAAGAGCGAGGGTT	0.672													12	24					0	0	0.004007	0	0
VPS13D	55187	broad.mit.edu	37	1	12336956	12336956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12336956C>T	uc001atv.2	+	19	3452	c.3311C>T	c.(3310-3312)TCC>TTC	p.S1104F	VPS13D_uc001atw.2_Missense_Mutation_p.S1104F|VPS13D_uc001atx.2_Missense_Mutation_p.S292F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1104					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CAGGTGATTTCCCTACAGGTG	0.363													13	37					0	0	0.002450	0	0
VPS13D	55187	broad.mit.edu	37	1	12445353	12445353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12445353C>T	uc001atv.2	+	59	11546	c.11405C>T	c.(11404-11406)TCA>TTA	p.S3802L	VPS13D_uc001atw.2_Missense_Mutation_p.S3777L|VPS13D_uc001atx.2_Missense_Mutation_p.S2989L|VPS13D_uc009vnl.2_RNA	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3801					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGCAGCCGTTCATATGAAGTG	0.388													11	23					0	0	0.001368	0	0
AADACL4	343066	broad.mit.edu	37	1	12704665	12704665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12704665C>T	uc001auf.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	34	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CACGGATATCCCTGCTACCTT	0.522													38	66					0	0	0.006999	0	0
LOC649330	649330	broad.mit.edu	37	1	12907965	12907965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12907965C>T	uc009vno.2	-	1	273	c.178G>A	c.(178-180)GAG>AAG	p.E60K	HNRNPCL1_uc010obf.1_Missense_Mutation_p.E60K	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	60							nucleic acid binding|nucleotide binding				0						GCATTTTTCTCCTTATCATAT	0.478													12	76					0	0	0.001855	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921091	12921091	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:12921091C>T	uc001aum.1	+	4	969	c.882C>T	c.(880-882)CCC>CCT	p.P294P		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	294											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCCAGAACCCCTTGGAGAACT	0.458													21	59					0	0	0.003330	0	0
PRDM2	7799	broad.mit.edu	37	1	14108590	14108590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:14108590C>T	uc001avi.2	+	8	5156	c.4300C>T	c.(4300-4302)CTT>TTT	p.L1434F	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.L1434F|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Missense_Mutation_p.L1233F|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	1434	Arg/Lys-rich (basic).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GAAAGCAATTCTTCAGAAAAA	0.373													48	69					0	0	0.003610	0	0
KAZ	23254	broad.mit.edu	37	1	15370527	15370527	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:15370527C>T	uc001avm.3	+	4	879	c.598C>T	c.(598-600)CTG>TTG	p.L200L	KAZ_uc009vog.1_Silent_p.L200L|KAZ_uc010obj.1_Silent_p.L200L|KAZ_uc001avo.2_Silent_p.L194L|KAZ_uc001avp.2_Silent_p.L106L|KAZ_uc001avq.2_Silent_p.L106L|KAZ_uc001avr.2_Silent_p.L103L	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	200	Interaction with PPL.|Potential.				keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						GGAGAAGGACCTGCTGGAGCG	0.657													22	14					0	0	0.002780	0	0
EFHD2	79180	broad.mit.edu	37	1	15752508	15752508	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:15752508C>T	uc001awh.2	+	2	527	c.450C>T	c.(448-450)TTC>TTT	p.F150F		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	150	2 (Potential).|EF-hand 2.					membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		AGCTGAGCTTCCGGGAGGTAA	0.587													7	17					0	0	0.004482	0	0
DNAJC16	23341	broad.mit.edu	37	1	15874796	15874796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:15874796C>T	uc001aws.2	+	7	1016	c.896C>T	c.(895-897)TCA>TTA	p.S299L	DNAJC16_uc001awr.1_Missense_Mutation_p.S299L|DNAJC16_uc001awt.2_5'UTR	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	299	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GATTATTTATCATTTGGATAT	0.383													18	25					0	0	0.004990	0	0
TMEM82	388595	broad.mit.edu	37	1	16069344	16069344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:16069344C>T	uc001axc.2	+	2	241	c.103C>T	c.(103-105)CTT>TTT	p.L35F		NM_001013641	NP_001013663	A0PJX8	TMM82_HUMAN	transmembrane protein 82	35	Leu-rich.|Helical; (Potential).					integral to membrane				breast(1)|central_nervous_system(1)	2		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GATCGGGGCCCTTGGAGTCTT	0.647													6	6					0	0	0.001984	0	0
FBLIM1	54751	broad.mit.edu	37	1	16095111	16095111	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:16095111A>T	uc001axd.1	+	6	970	c.527A>T	c.(526-528)AAA>ATA	p.K176I	FBLIM1_uc001axe.1_Missense_Mutation_p.K176I|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.K176I|FBLIM1_uc001axh.1_Intron|FBLIM1_uc001axi.1_Intron	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	176					cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CCTGTTGAGAAAGGGGCATCC	0.632													11	12					0	0	0.001368	0	0
CLCNKB	1188	broad.mit.edu	37	1	16372084	16372084	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:16372084C>T	uc001axw.3	+	3	212	c.132C>T	c.(130-132)TTC>TTT	p.F44F	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Silent_p.F44F	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	44	Cytoplasmic (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		AGAAGCTCTTCCGCCTGGGCG	0.642													10	32					0	0	0.000978	0	0
SPATA21	374955	broad.mit.edu	37	1	16736305	16736305	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:16736305G>A	uc001ayn.2	-	6	861	c.378C>T	c.(376-378)AGC>AGT	p.S126S	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Silent_p.S103S	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	126	Pro-rich.						calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		TCTGAGGCAGGCTTGGAGCTG	0.706													11	15					0	0	0.001368	0	0
MST1P2	11209	broad.mit.edu	37	1	16976624	16976624	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:16976624G>A	uc010och.1	+	14		c.2345G>A			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GTCCTGAAAGGAATTAGAATC	0.577													4	51					0	0	0.000602	0	0
MST1P9	11223	broad.mit.edu	37	1	17084042	17084042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:17084042C>T	uc010ock.1	-	14	1879	c.1879G>A	c.(1879-1881)GGA>AGA	p.G627R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.G227R	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GCCAACAGTCCCTCAGTGCAC	0.562													4	56					0	0	0.000978	0	0
MST1P9	11223	broad.mit.edu	37	1	17084256	17084256	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:17084256C>T	uc010ock.1	-	13	1761	c.1761G>A	c.(1759-1761)GAG>GAA	p.E587E	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.E187E	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TACCTTTGGTCTCACCCCAGC	0.602													8	246					0	0	0.006214	0	0
IGSF21	84966	broad.mit.edu	37	1	18554492	18554492	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:18554492C>T	uc001bau.1	+	2	554	c.171C>T	c.(169-171)ATC>ATT	p.I57I		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	57	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		TGCGGGAGATCGTGTGGTACC	0.587													20	29					0	0	0.001216	0	0
TAS1R2	80834	broad.mit.edu	37	1	19183978	19183978	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:19183978C>T	uc001bba.1	-	2	331	c.330G>A	c.(328-330)CCG>CCA	p.P110P		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	110	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	AGTAGAGCACCGGCTGGACAT	0.542													20	31					0	0	0.004656	0	0
AKR7L	246181	broad.mit.edu	37	1	19597390	19597390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:19597390G>A	uc010ocx.1	-	2	254	c.254C>T	c.(253-255)TCC>TTC	p.S85F	AKR7L_uc010ocy.1_Missense_Mutation_p.S85F	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						AGGCTTCAGGGAGTTCCCAAT	0.428													10	19					0	0	0.000673	0	0
HTR6	3362	broad.mit.edu	37	1	20005187	20005188	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:20005187_20005188GG>AA	uc001bcl.2	+	2	1309_1310	c.842_843GG>AA	c.(841-843)TGG>TAA	p.W281*		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	281	Helical; Name=6; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	TTTGTGACCTGGTTGCCCTTCT	0.624													10	9					0	0	0.004672	0	0
RNF186	54546	broad.mit.edu	37	1	20141231	20141231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:20141231C>T	uc001bcr.2	-	1	541	c.364G>A	c.(364-366)GGG>AGG	p.G122R		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	122						integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCACCAGCCCCTGAGGACAG	0.662													19	26					0	0	0.001216	0	0
CDA	978	broad.mit.edu	37	1	20931499	20931499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:20931499G>A	uc001bdk.2	+	2	412	c.233G>A	c.(232-234)GGG>GAG	p.G78E	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_Intron	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	78					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	GTCTCAGAAGGGTACAAGGAT	0.498													11	17					0	0	0.001855	0	0
KIF17	57576	broad.mit.edu	37	1	21009190	21009190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21009190C>T	uc001bdr.3	-	11	2537	c.2419G>A	c.(2419-2421)GAA>AAA	p.E807K	KIF17_uc001bdp.3_Missense_Mutation_p.E85K|KIF17_uc001bdq.3_Missense_Mutation_p.E85K|KIF17_uc009vpx.2_Missense_Mutation_p.E177K|KIF17_uc001bds.3_Missense_Mutation_p.E807K	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	807	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GCCCGCACTTCCTCCTGGATG	0.637													13	31					0	0	0.002450	0	0
ECE1	1889	broad.mit.edu	37	1	21546524	21546524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21546524G>A	uc001bek.2	-	19	2312	c.2237C>T	c.(2236-2238)TCC>TTC	p.S746F	ECE1_uc001bem.2_Missense_Mutation_p.S730F|ECE1_uc001bej.2_Missense_Mutation_p.S734F|ECE1_uc001bei.2_Missense_Mutation_p.S743F|ECE1_uc010odl.1_Missense_Mutation_p.S714F	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	746	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		GAACTCCTTGGAATTGGAGAG	0.612													15	26					0	0	0.006122	0	0
ECE1	1889	broad.mit.edu	37	1	21560127	21560127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21560127C>T	uc001bek.2	-	14	1669	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K	ECE1_uc001bem.2_Missense_Mutation_p.E516K|ECE1_uc001bej.2_Missense_Mutation_p.E520K|ECE1_uc001bei.2_Missense_Mutation_p.E529K|ECE1_uc010odl.1_Missense_Mutation_p.E532K|ECE1_uc009vqa.1_Missense_Mutation_p.E532K	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	532	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		ATGGCATTTTCAAAGTAGAGG	0.527													24	30					0	0	0.003954	0	0
ALPL	249	broad.mit.edu	37	1	21894741	21894741	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21894741G>A	uc001bet.2	+	7	1049	c.792_splice	c.e7+1	p.K264_splice	ALPL_uc010odn.1_Splice_Site_p.K212_splice|ALPL_uc010odo.1_Splice_Site_p.K209_splice|ALPL_uc010odp.1_Splice_Site_p.K187_splice|ALPL_uc001beu.3_Splice_Site_p.K264_splice	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase						response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	GAGATACAAGGTAGCCTGTGC	0.572													12	10					0	0	0.001855	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21925999	21925999	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21925999C>T	uc001bex.2	-	21	2022	c.1764G>A	c.(1762-1764)GAG>GAA	p.E588E	RAP1GAP_uc001bev.2_Silent_p.E673E|RAP1GAP_uc001bew.2_Silent_p.E652E|RAP1GAP_uc001bey.2_Silent_p.E614E	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	588					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		GGCCTGTGTCCTCTCCGTCCA	0.657													27	36					0	0	0.002096	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21926060	21926060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:21926060G>A	uc001bex.2	-	21	1961	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F	RAP1GAP_uc001bev.2_Missense_Mutation_p.S653F|RAP1GAP_uc001bew.2_Missense_Mutation_p.S632F|RAP1GAP_uc001bey.2_Missense_Mutation_p.S594F	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	568					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		ACTGGACGAGGAGCGGGAGAA	0.682													13	18					0	0	0.001855	0	0
E2F2	1870	broad.mit.edu	37	1	23847473	23847473	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:23847473G>A	uc001bhe.1	-	4	1097	c.669C>T	c.(667-669)GCC>GCT	p.A223A		NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	223	Dimerization (Potential).				G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		GCTGGTCCAAGGCCTGCTCCG	0.577													17	22					0	0	0.006122	0	0
MYOM3	127294	broad.mit.edu	37	1	24387573	24387573	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:24387573C>T	uc001bin.3	-	35	4135	c.3972_splice	c.e35-1	p.K1324_splice	MYOM3_uc001bil.3_Splice_Site_p.K217_splice|MYOM3_uc001bim.3_Splice_Site_p.K981_splice	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3											skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGCCAAGGTTCTGAAAAACAG	0.488													11	24					0	0	0.002450	0	0
MYOM3	127294	broad.mit.edu	37	1	24406641	24406641	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:24406641G>A	uc001bin.3	-	20	2614	c.2451C>T	c.(2449-2451)TCC>TCT	p.S817S	MYOM3_uc001bim.3_Silent_p.S474S|MYOM3_uc001bio.2_Silent_p.S817S	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	817	Fibronectin type-III 5.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GCAGCACCAGGGATGTGGCCC	0.557													10	16					0	0	0.001368	0	0
TMEM57	55219	broad.mit.edu	37	1	25824876	25824876	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:25824876C>T	uc001bkk.2	+	11	2116	c.1914C>T	c.(1912-1914)CCC>CCT	p.P638P	TMEM57_uc009vru.2_Silent_p.P411P|TMEM57_uc009vrv.2_Silent_p.P280P	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	638						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTTTCCCCCCACTACTCTT	0.537													34	39					0	0	0.003271	0	0
TRIM63	84676	broad.mit.edu	37	1	26393949	26393949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:26393949G>A	uc001bli.1	-	1	173	c.37C>T	c.(37-39)CCC>TCC	p.P13S		NM_032588	NP_115977	Q969Q1	TRI63_HUMAN	muscle specific ring finger protein 1	13						cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		TTCTCCATGGGATTCCCATCC	0.522													8	26					0	0	0.000673	0	0
CNKSR1	10256	broad.mit.edu	37	1	26508985	26508985	+	Silent	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:26508985T>A	uc001bln.3	+	6	592	c.534T>A	c.(532-534)GCT>GCA	p.A178A	CNKSR1_uc010oex.1_RNA|CNKSR1_uc001blm.3_Silent_p.A178A|CNKSR1_uc009vsd.2_5'UTR|CNKSR1_uc009vse.2_5'UTR|CNKSR1_uc001blo.2_5'UTR	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	178					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GCCACGTGGCTGGGATCTGCC	0.642													10	17					0	0	0.006214	0	0
CATSPER4	378807	broad.mit.edu	37	1	26517266	26517266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:26517266C>T	uc010oez.1	+	1	148	c.148C>T	c.(148-150)CAC>TAC	p.H50Y	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	50	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		GAGTACCATTCACGAGTCCTA	0.627													7	10					0	0	0.006214	0	0
LIN28A	79727	broad.mit.edu	37	1	26752889	26752889	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:26752889C>T	uc001bmj.2	+	4	684	c.570C>T	c.(568-570)TAC>TAT	p.Y190Y	LIN28A_uc001bmi.1_RNA	NM_024674	NP_078950	Q9H9Z2	LN28A_HUMAN	lin-28 homolog	190					miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing|stem cell maintenance	cytoplasmic mRNA processing body|nucleolus|stress granule	DNA binding|zinc ion binding			central_nervous_system(1)	1						AGCCAACCTACTTTCGAGAGG	0.547													17	25					0	0	0.001882	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26877901	26877901	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:26877901C>T	uc001bmr.1	+	5	484	c.321C>T	c.(319-321)GTC>GTT	p.V107V	RPS6KA1_uc010ofe.1_Silent_p.V15V|RPS6KA1_uc010off.1_Silent_p.V91V|RPS6KA1_uc001bms.1_Silent_p.V116V|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	107	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		GTGACCGCGTCCGGACCAAGA	0.552													11	19					0	0	0.002450	0	0
SYTL1	84958	broad.mit.edu	37	1	27677430	27677430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:27677430C>T	uc001bnw.1	+	11	1318	c.1151C>T	c.(1150-1152)CCC>CTC	p.P384L	SYTL1_uc001bnv.1_Missense_Mutation_p.P372L|SYTL1_uc009vsu.1_Intron|SYTL1_uc001bnx.2_3'UTR|SYTL1_uc009vsv.1_Missense_Mutation_p.P384L	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	384					exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ACCTGGCTCCCCCTGCAGCCC	0.687													14	20					0	0	0.003163	0	0
CD164L2	388611	broad.mit.edu	37	1	27706630	27706630	+	Silent	SNP	G	A	A	rs145796710	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:27706630G>A	uc001boc.2	-	5	505	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_207397	NP_997280	Q6UWJ8	C16L2_HUMAN	CD164 sialomucin-like 2	143	Helical; (Potential).					integral to membrane					0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CGACACCTCCGATAAAGCTGG	0.612													25	42					0	0	0.004656	0	0
LOC653566	653566	broad.mit.edu	37	1	28422782	28422782	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:28422782C>T	uc010ofv.1	-	1	288	c.152G>A	c.(151-153)TGG>TAG	p.W51*		NM_014752	NP_055567			signal peptidase complex subunit 2 homolog												0						TGATCCATCCCACTTGTCAAT	0.448													5	4					0	0	0.000602	0	0
RCC1	1104	broad.mit.edu	37	1	28861846	28861846	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:28861846C>T	uc001bqg.1	+	6	700	c.615C>T	c.(613-615)GGC>GGT	p.G205G	SNHG3-RCC1_uc001bqa.1_Silent_p.G205G|SNHG3-RCC1_uc001bqb.1_Silent_p.G205G|SNHG3-RCC1_uc001bqc.1_Silent_p.G205G|RCC1_uc001bqe.1_Silent_p.G222G|RCC1_uc001bqf.1_Silent_p.G236G	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	205	RCC1 4.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		GCCAGCTAGGCCGTGTGCCTG	0.587													16	24					0	0	0.006122	0	0
HCRTR1	3061	broad.mit.edu	37	1	32086542	32086542	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:32086542G>A	uc009vtx.2	+	5	862	c.477G>A	c.(475-477)CGG>CGA	p.R159R	HCRTR1_uc001btb.2_5'UTR|HCRTR1_uc001btc.3_Silent_p.R73R|HCRTR1_uc001btd.2_Silent_p.R159R|HCRTR1_uc010ogl.1_Silent_p.R159R	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	159	Cytoplasmic (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		GCACAGCCCGGCGGGCCCGTG	0.617													15	23					0	0	0.003163	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280373	32280373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:32280373C>T	uc001bts.1	-	2	620	c.562G>A	c.(562-564)GAG>AAG	p.E188K	SPOCD1_uc001btu.2_Missense_Mutation_p.E188K|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	188					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CCAGGGGGCTCCTCTTTGCTG	0.592													16	30					0	0	0.004990	0	0
KHDRBS1	10657	broad.mit.edu	37	1	32495997	32495997	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:32495997C>T	uc001bub.2	+	2	587	c.481C>T	c.(481-483)CTG>TTG	p.L161L	KHDRBS1_uc001bua.1_Silent_p.L161L|KHDRBS1_uc001buc.1_RNA	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal	161					cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AGAGCGAGTGCTGATACCTGT	0.358													15	23					0	0	0.003163	0	0
ZNF362	149076	broad.mit.edu	37	1	33747277	33747277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:33747277C>T	uc001bxc.1	+	6	943	c.773C>T	c.(772-774)CCG>CTG	p.P258L		NM_152493	NP_689706	Q5T0B9	ZN362_HUMAN	zinc finger protein 362	258	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CACAAGTGCCCGCACTGCTCC	0.582													42	57					0	0	0.002852	0	0
CSMD2	114784	broad.mit.edu	37	1	34066529	34066529	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34066529G>A	uc001bxn.1	-	45	6827	c.6798C>T	c.(6796-6798)AAC>AAT	p.N2266N	CSMD2_uc001bxm.1_Silent_p.N2264N|CSMD2_uc001bxo.1_Silent_p.N1137N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2266	Extracellular (Potential).|CUB 13.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCAGGACCTGGTTGGATGAAC	0.488													28	55					0	0	0.001512	0	0
CSMD2	114784	broad.mit.edu	37	1	34112365	34112365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34112365C>T	uc001bxn.1	-	29	4566	c.4537G>A	c.(4537-4539)GGA>AGA	p.G1513R	CSMD2_uc001bxm.1_Missense_Mutation_p.G1553R|CSMD2_uc001bxo.1_Missense_Mutation_p.G426R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1513	CUB 9.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TAGAAGCTTCCTATGAGAGGG	0.567													11	11					0	0	0.001368	0	0
CSMD2	114784	broad.mit.edu	37	1	34209167	34209167	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34209167G>A	uc001bxn.1	-	14	1796	c.1767C>T	c.(1765-1767)GTC>GTT	p.V589V	CSMD2_uc001bxm.1_Silent_p.V629V	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	589	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGGGAGACAGGACAACCCCAG	0.572													14	24					0	0	0.001855	0	0
CSMD2	114784	broad.mit.edu	37	1	34383840	34383840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34383840G>A	uc001bxn.1	-	5	684	c.655C>T	c.(655-657)CCC>TCC	p.P219S	CSMD2_uc001bxm.1_Missense_Mutation_p.P259S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	219	CUB 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TACTCCGAGGGGAAGTGGGGG	0.582													7	16					0	0	0.003080	0	0
C1orf94	84970	broad.mit.edu	37	1	34663234	34663234	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34663234C>T	uc001bxs.3	+	2	558	c.159C>T	c.(157-159)TTC>TTT	p.F53F	C1orf94_uc001bxt.2_Silent_p.F243F	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	53							protein binding				0		Myeloproliferative disorder(586;0.0393)				TGTCCCAGTTCCCACTGAAGT	0.547													16	24					0	0	0.006122	0	0
C1orf94	84970	broad.mit.edu	37	1	34677895	34677895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34677895C>T	uc001bxs.3	+	6	1438	c.1039C>T	c.(1039-1041)CAG>TAG	p.Q347*	C1orf94_uc001bxt.2_Nonsense_Mutation_p.Q537*	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	347							protein binding				0		Myeloproliferative disorder(586;0.0393)				CCCTTTTGTCCAGCCCAATTA	0.552													8	24					0	0	0.004482	0	0
C1orf94	84970	broad.mit.edu	37	1	34677979	34677979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:34677979C>T	uc001bxs.3	+	6	1522	c.1123C>T	c.(1123-1125)CCG>TCG	p.P375S	C1orf94_uc001bxt.2_Missense_Mutation_p.P565S	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	375							protein binding				0		Myeloproliferative disorder(586;0.0393)				AGGAGATGGACCGCAGTACCT	0.572													7	18					0	0	0.004482	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370093	35370093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:35370093C>T	uc001byc.2	-	1	892	c.892G>A	c.(892-894)GAC>AAC	p.D298N		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	298					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				AAGCTCAAGTCCCGGTAGGAC	0.647													20	36					0	0	0.001216	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370833	35370833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:35370833C>T	uc001byc.2	-	1	152	c.152G>A	c.(151-153)AGA>AAA	p.R51K		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	51					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CAGGCCAGCTCTCGGGGCACA	0.701													5	8					0	0	0.001168	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35972665	35972665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:35972665G>A	uc001byx.2	-	3	472	c.214C>T	c.(214-216)CAC>TAC	p.H72Y	KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Missense_Mutation_p.H72Y|KIAA0319L_uc010ohx.1_Missense_Mutation_p.H72Y	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	72	MANSC.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGCCAGAGGTGATTTTCTCCC	0.512													28	52					0	0	0.007291	0	0
EIF2C3	192669	broad.mit.edu	37	1	36437823	36437823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:36437823C>T	uc001bzp.2	+	4	767	c.511C>T	c.(511-513)CCC>TCC	p.P171S	EIF2C3_uc001bzn.1_Missense_Mutation_p.P171S|EIF2C3_uc001bzo.2_RNA|EIF2C3_uc001bzq.2_5'UTR	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	171					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACGACATCTGCCCTCCATGAA	0.453													3	15					0	0	0.004672	0	0
THRAP3	9967	broad.mit.edu	37	1	36752763	36752763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:36752763C>T	uc001cae.3	+	4	1156	c.932C>T	c.(931-933)CCA>CTA	p.P311L	THRAP3_uc001caf.3_Missense_Mutation_p.P311L|THRAP3_uc001cag.1_Missense_Mutation_p.P311L	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	311	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCCCTGAGTCCATCCAAAAAG	0.562			T	USP6	aneurysmal bone cysts								15	22					0	0	0.002450	0	0
THRAP3	9967	broad.mit.edu	37	1	36754862	36754862	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:36754862C>T	uc001cae.3	+	5	1466	c.1242C>T	c.(1240-1242)CTC>CTT	p.L414L	THRAP3_uc001caf.3_Silent_p.L414L|THRAP3_uc001cag.1_Silent_p.L414L	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	414					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGTATAAGCTCCGAGATGACT	0.438			T	USP6	aneurysmal bone cysts								20	34					0	0	0.001216	0	0
THRAP3	9967	broad.mit.edu	37	1	36769490	36769490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:36769490C>T	uc001cae.3	+	12	2964	c.2740C>T	c.(2740-2742)CGG>TGG	p.R914W	THRAP3_uc001caf.3_Missense_Mutation_p.R914W|C1orf113_uc010oia.1_5'Flank	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	914					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GTTCATGTTCCGGAAATCAAG	0.607			T	USP6	aneurysmal bone cysts								16	21					0	0	0.004007	0	0
GRIK3	2899	broad.mit.edu	37	1	37356674	37356674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:37356674C>T	uc001caz.2	-	2	274	c.139G>A	c.(139-141)GGC>AGC	p.G47S	GRIK3_uc001cba.1_Missense_Mutation_p.G47S	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	47	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GCGTTGGGGCCGTCCGCATAC	0.512													47	52					0	0	0.003610	0	0
RSPO1	284654	broad.mit.edu	37	1	38078580	38078580	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:38078580C>T	uc001cbl.1	-	8	1427	c.639G>A	c.(637-639)AGG>AGA	p.R213R	RSPO1_uc001cbm.1_Silent_p.R213R|RSPO1_uc009vvf.1_Silent_p.R186R|RSPO1_uc009vvg.1_Silent_p.R150R	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	213					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCCTCCCTTCCTCCTCTTCT	0.617													13	21					0	0	0.003163	0	0
SF3A3	10946	broad.mit.edu	37	1	38435130	38435130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:38435130G>A	uc001cci.2	-	14	1301	c.1177C>T	c.(1177-1179)CCC>TCC	p.P393S	SF3A3_uc010oik.1_Missense_Mutation_p.P340S	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	393					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AGCCAGTAGGGAATAGGCTAA	0.413													27	29					0	0	0.007291	0	0
MACF1	23499	broad.mit.edu	37	1	39797699	39797699	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:39797699C>T	uc010oiu.1	+	1	890	c.759C>T	c.(757-759)ATC>ATT	p.I253I	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1818	Plectin 4.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAGGAGGCATCATAGACACTG	0.478													14	15					0	0	0.003163	0	0
KCNQ4	9132	broad.mit.edu	37	1	41300771	41300771	+	Splice_Site	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:41300771G>C	uc001cgh.1	+	12	1827	c.1745_splice	c.e12+1	p.R582_splice	KCNQ4_uc001cgi.1_Splice_Site_p.R528_splice	NM_004700	NP_004691	P56696	KCNQ4_HUMAN	potassium voltage-gated channel KQT-like protein						sensory perception of sound	basal plasma membrane|voltage-gated potassium channel complex				central_nervous_system(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.38e-17)			TGCAAACTCGGTGGGTGCACC	0.637													15	32					0	0	0.003163	0	0
HIVEP3	59269	broad.mit.edu	37	1	42045623	42045623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:42045623G>A	uc001cgz.3	-	4	6059	c.4846C>T	c.(4846-4848)CAC>TAC	p.H1616Y	HIVEP3_uc001cha.3_Missense_Mutation_p.H1616Y|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1616					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TGCTGGATGTGATTTGGCTTA	0.473													36	50					0	0	0.004878	0	0
SLC2A1	6513	broad.mit.edu	37	1	43393399	43393399	+	Silent	SNP	G	A	A	rs76860965		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:43393399G>A	uc001cik.2	-	9	1680	c.1155C>T	c.(1153-1155)CCC>CCT	p.P385P		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	385	Helical; Name=10; (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	ACCATGGGATGGGGCCAGGAC	0.552													9	7					0	0	0.004482	0	0
FAM183A	440585	broad.mit.edu	37	1	43613734	43613734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:43613734C>T	uc009vwo.2	+	1	141	c.112C>T	c.(112-114)CAC>TAC	p.H38Y		NM_001101376	NP_001094846	A6NL82	F183A_HUMAN	hCG23177	38										ovary(3)	3						CACGCAGTATCACGTGAATCC	0.612													10	18					0	0	0.001368	0	0
MPL	4352	broad.mit.edu	37	1	43818335	43818335	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:43818335G>A	uc001ciw.2	+	12	1845	c.1800G>A	c.(1798-1800)GGG>GGA	p.G600G	MPL_uc009vwr.2_Silent_p.G593G	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	600	Cytoplasmic (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTTGCCTGGGGACCATGCCCC	0.572			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						13	24					0	0	0.002450	0	0
PTPRF	5792	broad.mit.edu	37	1	44070902	44070902	+	Silent	SNP	G	A	A	rs143712248		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:44070902G>A	uc001cjr.2	+	18	3517	c.3177G>A	c.(3175-3177)TCG>TCA	p.S1059S	PTPRF_uc001cjs.2_Silent_p.S1050S|PTPRF_uc001cju.2_Silent_p.S437S|PTPRF_uc009vwt.2_Silent_p.S619S|PTPRF_uc001cjv.2_Silent_p.S519S|PTPRF_uc001cjw.2_Silent_p.S285S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1059	Extracellular (Potential).|Fibronectin type-III 8.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACGGGCACTCGATGCGGAAGC	0.612													14	20					0	0	0.002450	0	0
PTPRF	5792	broad.mit.edu	37	1	44083121	44083121	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:44083121C>T	uc001cjr.2	+	24	4417	c.4077C>T	c.(4075-4077)ATC>ATT	p.I1359I	PTPRF_uc001cjs.2_Silent_p.I1350I|PTPRF_uc001cju.2_Silent_p.I748I|PTPRF_uc009vwt.2_Silent_p.I919I|PTPRF_uc001cjv.2_Silent_p.I830I|PTPRF_uc001cjw.2_Silent_p.I585I	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1359	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				TGCAGTCCATCGACCCTGGAC	0.567													13	29					0	0	0.002450	0	0
ST3GAL3	6487	broad.mit.edu	37	1	44386159	44386159	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:44386159C>T	uc001ckc.2	+	10	1005	c.828C>T	c.(826-828)TTC>TTT	p.F276F	ST3GAL3_uc001cjz.2_Silent_p.F291F|ST3GAL3_uc001cka.2_Intron|ST3GAL3_uc001ckb.2_Silent_p.F345F|ST3GAL3_uc001ckd.2_Silent_p.F330F|ST3GAL3_uc001cke.2_Silent_p.F260F|ST3GAL3_uc001ckf.2_Silent_p.F314F|ST3GAL3_uc001ckg.2_Intron|ST3GAL3_uc001ckh.2_Intron|ST3GAL3_uc001cki.2_Intron|ST3GAL3_uc009vwv.2_Intron|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Silent_p.F245F|ST3GAL3_uc009vwy.2_Silent_p.F182F|ST3GAL3_uc009vwx.2_Intron|ST3GAL3_uc001ckm.2_Intron|ST3GAL3_uc001ckl.2_Intron|ST3GAL3_uc009vwz.2_Silent_p.F50F|ST3GAL3_uc001ckn.2_Intron|ST3GAL3_uc001ckp.2_Intron|ST3GAL3_uc001cko.2_Intron|ST3GAL3_uc009vxa.2_Silent_p.F63F|ST3GAL3_uc001ckq.2_Intron|ST3GAL3_uc001ckr.2_Intron|ST3GAL3_uc009vxb.2_Intron	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	276	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				ACCCATATTTCATCCAGGAGG	0.577													19	37					0	0	0.007413	0	0
KLF17	128209	broad.mit.edu	37	1	44595756	44595756	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:44595756G>A	uc001clp.2	+	2	871	c.813G>A	c.(811-813)GGG>GGA	p.G271G	KLF17_uc009vxf.1_Silent_p.G234G	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	271					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CTCAGGAAGGGACTGGTAGAA	0.562													20	25					0	0	0.001882	0	0
KLF17	128209	broad.mit.edu	37	1	44596314	44596314	+	Silent	SNP	C	T	T	rs139118447	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:44596314C>T	uc001clp.2	+	3	1114	c.1056C>T	c.(1054-1056)TTC>TTT	p.F352F		NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	352	C2H2-type 3.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GCCGGGAGTTCATGAGGTCTG	0.512													20	31					0	0	0.007413	0	0
PTCH2	8643	broad.mit.edu	37	1	45295074	45295074	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:45295074C>T	uc010olf.1	-	9	1227	c.1215G>A	c.(1213-1215)ATG>ATA	p.M405I	PTCH2_uc010olg.1_Missense_Mutation_p.M104I	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	405	Helical; (Potential).|SSD.				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAAGACCCACCATGAGCAGAT	0.632									Basal_Cell_Nevus_syndrome				13	33					0	0	0.001855	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47366065	47366065	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:47366065G>A	uc001cqo.1	-	1		c.83C>T			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TCAGCAGCAAGAAGGGGTGAG	0.547													10	11					0	0	0.000673	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610393	47610393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:47610393G>A	uc001cqv.1	+	8	1120	c.1069G>A	c.(1069-1071)GAT>AAT	p.D357N	CYP4A22_uc009vyo.2_Missense_Mutation_p.D357N|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	357						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						CCTCCTGGGTGATGGAGCCTC	0.622													7	17					0	0	0.001984	0	0
TAL1	6886	broad.mit.edu	37	1	47685433	47685433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:47685433G>A	uc001cqx.2	-	4	1532	c.955C>T	c.(955-957)CCT>TCT	p.P319S	TAL1_uc009vyq.2_Silent_p.I75I|TAL1_uc001cqy.2_Missense_Mutation_p.P319S	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	319					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						AGCATGGCAGGATGGAGGCTG	0.697			T	TRD@|SIL	lymphoblastic leukemia/biphasic								12	29					0	0	0.003163	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52912063	52912063	+	Missense_Mutation	SNP	A	G	G	rs1044615		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:52912063A>G	uc001ctx.2	-	22	3799	c.3565T>C	c.(3565-3567)TGG>CGG	p.W1189R	ZCCHC11_uc001cty.2_Missense_Mutation_p.W1189R|ZCCHC11_uc001ctz.2_Missense_Mutation_p.W1189R|ZCCHC11_uc009vze.1_Missense_Mutation_p.W1189R|ZCCHC11_uc009vzf.1_Missense_Mutation_p.W910R|ZCCHC11_uc001cua.1_Missense_Mutation_p.W106R	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	1189	PAP-associated 2.				miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						AGTCCCAGCCAAAGCTCCCCT	0.358													12	31					0	0	0.002450	0	0
GLIS1	148979	broad.mit.edu	37	1	54060041	54060041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:54060041G>A	uc001cvr.1	-	3	1102	c.535C>T	c.(535-537)CTT>TTT	p.L179F		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	179					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGGCCTCCAAGGCTTGGGCCA	0.687													11	8					0	0	0.001368	0	0
TMEM48	55706	broad.mit.edu	37	1	54254856	54254856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:54254856G>A	uc001cvs.2	-	15	1890	c.1649C>T	c.(1648-1650)TCC>TTC	p.S550F	TMEM48_uc010onu.1_Missense_Mutation_p.S510F|TMEM48_uc001cvt.2_Missense_Mutation_p.S427F|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_Missense_Mutation_p.S215F	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	550	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						AGCCTGAATGGAGGCCTCTGG	0.343													18	30					0	0	0.002299	0	0
ACOT11	26027	broad.mit.edu	37	1	55050413	55050413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:55050413G>A	uc001cxm.1	+	2	201	c.119G>A	c.(118-120)GGA>GAA	p.G40E	ACOT11_uc001cxj.1_5'UTR|ACOT11_uc001cxk.2_Missense_Mutation_p.G6E|ACOT11_uc001cxl.1_Missense_Mutation_p.G40E	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	40	Acyl coenzyme A hydrolase 1.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						GACGGCGAGGGATACCGGAAC	0.587													5	17					0	0	0.000602	0	0
FAM151A	338094	broad.mit.edu	37	1	55077409	55077409	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:55077409C>T	uc001cxn.2	-	6	942	c.810G>A	c.(808-810)CTG>CTA	p.L270L	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	270						integral to membrane					0						GCCACAGCGTCAGGCTGTACC	0.602													19	43					0	0	0.002299	0	0
FAM151A	338094	broad.mit.edu	37	1	55089042	55089042	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:55089042C>T	uc001cxn.2	-	1	159	c.27G>A	c.(25-27)AAG>AAA	p.K9K	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	9						integral to membrane					0						TGACCTGATTCTTTGATAACT	0.602													40	68					0	0	0.003610	0	0
C1orf175	374977	broad.mit.edu	37	1	55167895	55167895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:55167895G>A	uc010ooe.1	+	20	3742	c.3418G>A	c.(3418-3420)GAG>AAG	p.E1140K	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.E658K|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.E342K	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1140	HEAT 4.					integral to membrane	binding				0						GACCATGCAGGAGGGCAACTC	0.617													5	8					0	0	0.000602	0	0
PCSK9	255738	broad.mit.edu	37	1	55525299	55525299	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:55525299C>T	uc001cyf.1	+	10	1935	c.1644C>T	c.(1642-1644)ACC>ACT	p.T548T	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	548					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GCATGGGGACCCGTGTCCACT	0.647													41	55					0	0	0.001951	0	0
PPAP2B	8613	broad.mit.edu	37	1	56962285	56962285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:56962285G>A	uc001cyj.1	-	7	1375	c.874C>T	c.(874-876)CGG>TGG	p.R292W		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	292	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						ATTTCCTTCCGGATAGCAGGG	0.468													28	32					0	0	0.006320	0	0
PPAP2B	8613	broad.mit.edu	37	1	57002660	57002660	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:57002660G>A	uc001cyj.1	-	3	765	c.264C>T	c.(262-264)CTC>CTT	p.L88L		NM_177414	NP_803133	O14495	LPP3_HUMAN	phosphatidic acid phosphatase type 2B	88	Helical; (Potential).				canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion|canonical Wnt receptor signaling pathway involved in positive regulation of endothelial cell migration|canonical Wnt receptor signaling pathway involved in positive regulation of wound healing|germ cell migration|homotypic cell-cell adhesion|negative regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|sphingolipid metabolic process	adherens junction|Golgi apparatus|integral to membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|protein binding|sphingosine-1-phosphate phosphatase activity				0						CCACGGCACAGAGCACAGCGT	0.473													27	57					0	0	0.002445	0	0
DAB1	1600	broad.mit.edu	37	1	57476456	57476456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:57476456C>T	uc001cys.1	-	16	2254	c.1580G>A	c.(1579-1581)GGA>GAA	p.G527E	DAB1_uc001cyt.1_Missense_Mutation_p.G525E|DAB1_uc001cyq.1_Missense_Mutation_p.G525E|DAB1_uc001cyr.1_Missense_Mutation_p.G441E|DAB1_uc009vzw.1_Missense_Mutation_p.G509E|DAB1_uc009vzx.1_Missense_Mutation_p.G527E	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	560					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GGCCTGTGATCCATCAGGCTA	0.438													32	41					0	0	0.001786	0	0
MYSM1	114803	broad.mit.edu	37	1	59126878	59126878	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:59126878G>A	uc009wab.1	-	19	2315	c.2292C>T	c.(2290-2292)ATC>ATT	p.I764I	uc001cza.2_5'Flank|MYSM1_uc009waa.1_Silent_p.I170I|MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	764					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					CCCGGCGAAAGATTTTATCCA	0.368													6	21					0	0	0.003080	0	0
FGGY	55277	broad.mit.edu	37	1	59844482	59844482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:59844482C>T	uc001czi.3	+	5	739	c.527C>T	c.(526-528)TCG>TTG	p.S176L	FGGY_uc001czg.2_Missense_Mutation_p.S64L|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.S176L|FGGY_uc001czj.3_Missense_Mutation_p.S176L|FGGY_uc001czk.3_Missense_Mutation_p.S64L|FGGY_uc001czl.3_Missense_Mutation_p.S88L	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	176					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					GACTTCTTATCGTGGAAGGCA	0.393													10	25					0	0	0.001368	0	0
CYP2J2	1573	broad.mit.edu	37	1	60370593	60370593	+	Missense_Mutation	SNP	G	A	A	rs72547599		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:60370593G>A	uc001czq.2	-	7	1146	c.1141C>T	c.(1141-1143)CCC>TCC	p.P381S		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	381					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					ACTTCCCTGGGAACGTTCAGG	0.547													21	35					0	0	0.003954	0	0
C1orf87	127795	broad.mit.edu	37	1	60499176	60499176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:60499176G>A	uc001czs.1	-	7	1093	c.1001C>T	c.(1000-1002)TCG>TTG	p.S334L		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	334							calcium ion binding			ovary(1)|breast(1)	2						GCCAGAGAACGAGCGATCTTC	0.428													15	35					0	0	0.003163	0	0
PGM1	5236	broad.mit.edu	37	1	64120033	64120033	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:64120033C>T	uc001dbh.2	+	10	1708	c.1495C>T	c.(1495-1497)CGA>TGA	p.R499*	PGM1_uc010ooy.1_Nonsense_Mutation_p.R302*|PGM1_uc010ooz.1_Nonsense_Mutation_p.R517*	NM_002633	NP_002624	P36871	PGM1_HUMAN	phosphoglucomutase 1	499					cellular calcium ion homeostasis|galactose catabolic process|glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity			ovary(2)|kidney(1)	3						AGATGGTTCTCGAATCGTCTT	0.517													11	21					0	0	0.001368	0	0
ROR1	4919	broad.mit.edu	37	1	64643679	64643679	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:64643679C>T	uc001dbj.2	+	9	2354	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	652	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CAGAGTAAGTCCTTGCTGCCC	0.453													22	39					0	0	0.002780	0	0
RAVER2	55225	broad.mit.edu	37	1	65255101	65255101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:65255101G>A	uc001dbs.1	+	5	1087	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	RAVER2_uc001dbt.1_Missense_Mutation_p.E216K|RAVER2_uc010opb.1_Missense_Mutation_p.E216K	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	337						cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						CTTACTTCCAGAGCCAAATCC	0.373													12	27					0	0	0.000978	0	0
LEPR	3953	broad.mit.edu	37	1	66102367	66102367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:66102367G>A	uc001dci.2	+	20	3369	c.3167G>A	c.(3166-3168)GGA>GAA	p.G1056E	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	1056	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TTCTCAGAAGGATTGGATGAA	0.363													42	80					0	0	0.003610	0	0
MIER1	57708	broad.mit.edu	37	1	67411848	67411848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:67411848C>T	uc001dde.2	+	4	343	c.209C>T	c.(208-210)TCA>TTA	p.S70L	MIER1_uc001dda.3_Nonsense_Mutation_p.Q95*|MIER1_uc010opf.1_Missense_Mutation_p.S34L|MIER1_uc009way.2_Missense_Mutation_p.S34L|MIER1_uc001ddc.2_Missense_Mutation_p.S70L|MIER1_uc001ddh.2_Intron|MIER1_uc001ddf.2_Missense_Mutation_p.S34L|MIER1_uc001ddg.2_5'UTR|MIER1_uc010opg.1_Missense_Mutation_p.S34L|MIER1_uc001ddj.1_Missense_Mutation_p.S17L|MIER1_uc001ddi.2_Missense_Mutation_p.S17L	NM_001077700	NP_001071168	Q8N108	MIER1_HUMAN	mesoderm induction early response 1 isoform b	41					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)	1						TCAGCAACATCAGATGACCAT	0.323													20	31					0	0	0.004656	0	0
SERBP1	26135	broad.mit.edu	37	1	67880961	67880961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:67880961G>A	uc001ddv.2	-	7	1198	c.1058C>T	c.(1057-1059)TCT>TTT	p.S353F	SERBP1_uc001ddx.2_Missense_Mutation_p.S347F|SERBP1_uc001ddy.2_Missense_Mutation_p.S332F|SERBP1_uc001ddw.2_Missense_Mutation_p.S338F	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	353					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						CTCCAGCTGAGACGTTATATC	0.517													28	31					0	0	0.001786	0	0
LRRC40	55631	broad.mit.edu	37	1	70618143	70618143	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:70618143A>T	uc001der.1	-	12	1464	c.1412T>A	c.(1411-1413)CTT>CAT	p.L471H		NM_017768	NP_060238	Q9H9A6	LRC40_HUMAN	leucine rich repeat containing 40	471	LRR 15.									ovary(1)	1						CAATTTCTGAAGCACACATAA	0.289													8	15					0	0	0.004482	0	0
SLC44A5	204962	broad.mit.edu	37	1	75716951	75716951	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:75716951G>A	uc001dgu.2	-	7	433	c.289C>T	c.(289-291)CTG>TTG	p.L97L	SLC44A5_uc001dgt.2_Silent_p.L97L|SLC44A5_uc001dgs.2_Silent_p.L55L|SLC44A5_uc001dgr.2_Silent_p.L55L|SLC44A5_uc010oqz.1_Silent_p.L136L|SLC44A5_uc010ora.1_Silent_p.L91L|SLC44A5_uc010orb.1_5'UTR	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	97	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						CAGCGTAACAGGTTAAAGTAA	0.428													23	51					0	0	0.003954	0	0
NEXN	91624	broad.mit.edu	37	1	78383812	78383812	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:78383812A>G	uc001dic.3	+	5	598	c.301A>G	c.(301-303)ACT>GCT	p.T101A	NEXN_uc001dia.3_Missense_Mutation_p.T101A|NEXN_uc009wcb.1_Missense_Mutation_p.T37A|NEXN_uc001dib.3_Missense_Mutation_p.T37A|NEXN_uc001did.1_Missense_Mutation_p.T25A|NEXN_uc001dif.1_5'UTR	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	101	Glu-rich.			YVPKLTGT -> NLPFTVP (in Ref. 3; AAD29607).	regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		ATTTTTAGGAACTGTGAAGGG	0.338													18	24					0	0	0.007413	0	0
PTGFR	5737	broad.mit.edu	37	1	78958855	78958855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:78958855C>T	uc001din.2	+	2	693	c.427C>T	c.(427-429)CAT>TAT	p.H143Y	PTGFR_uc001dim.2_Missense_Mutation_p.H143Y	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	143	Cytoplasmic (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity	p.H143N(2)		ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	ACCAATATTTCATTCTACGAA	0.413													18	38					0	0	0.006122	0	0
ELTD1	64123	broad.mit.edu	37	1	79357242	79357242	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:79357242G>A	uc001diq.3	-	14	2133	c.1977C>T	c.(1975-1977)TTC>TTT	p.F659F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	659	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ATAAAAAAATGAACATCCCCT	0.398													9	10					0	0	0.006214	0	0
LPHN2	23266	broad.mit.edu	37	1	82409444	82409444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:82409444C>T	uc001dit.3	+	6	1370	c.1189C>T	c.(1189-1191)CCT>TCT	p.P397S	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.P397S|LPHN2_uc001div.2_Missense_Mutation_p.P397S|LPHN2_uc009wcd.2_Missense_Mutation_p.P397S	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	397	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TCCACCTGATCCTGCCCAAGG	0.343													13	26					0	0	0.001368	0	0
TTLL7	79739	broad.mit.edu	37	1	84408173	84408173	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:84408173C>T	uc001djc.2	-	7	1092	c.696G>A	c.(694-696)AAG>AAA	p.K232K	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_Intron|TTLL7_uc001djf.2_Intron|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	232	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		GTGGAATGTACTTCTCTGTAC	0.358													12	12					0	0	0.002450	0	0
GCLM	2730	broad.mit.edu	37	1	94362304	94362304	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:94362304T>A	uc001dqg.1	-	5	703	c.410A>T	c.(409-411)AAT>ATT	p.N137I		NM_002061	NP_002052	P48507	GSH0_HUMAN	glutamate-cysteine ligase regulatory protein	137					glutamate metabolic process|glutathione biosynthetic process|regulation of blood vessel size|response to drug|response to oxidative stress|xenobiotic metabolic process	cytosol|soluble fraction	glutamate-cysteine ligase catalytic subunit binding			ovary(1)	1		all_lung(203;0.000815)|Lung NSC(277;0.00363)		all cancers(265;0.00566)|GBM - Glioblastoma multiforme(16;0.0203)|Epithelial(280;0.131)	L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	CAAGGAAAGATTAACTCCATC	0.408													27	42					0	0	0.006320	0	0
ABCA4	24	broad.mit.edu	37	1	94544976	94544976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:94544976G>A	uc001dqh.2	-	9	1245	c.1141C>T	c.(1141-1143)CCT>TCT	p.P381S	ABCA4_uc010otn.1_Missense_Mutation_p.P381S	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	381	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTGGTTAAAGGATTTGACTCC	0.448													23	28					0	0	0.002299	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94645387	94645387	+	Missense_Mutation	SNP	T	G	G	rs138781972		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:94645387T>G	uc001dqj.3	-	20	2743	c.2374A>C	c.(2374-2376)ATG>CTG	p.M792L	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Missense_Mutation_p.M358L	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	792	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity	p.M792V(1)		breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TCTATACACATATTTGGCCAT	0.308													33	37					0	0	0.003271	0	0
PTBP2	58155	broad.mit.edu	37	1	97278483	97278483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:97278483C>T	uc001drq.2	+	12	1633	c.1387C>T	c.(1387-1389)CCT>TCT	p.P463S	PTBP2_uc001drn.2_Missense_Mutation_p.P468S|PTBP2_uc001dro.2_Missense_Mutation_p.P463S|PTBP2_uc010otz.1_Missense_Mutation_p.P479S|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.P411S|PTBP2_uc001drr.2_Missense_Mutation_p.P468S|PTBP2_uc010oua.1_Missense_Mutation_p.P471S|PTBP2_uc001dru.2_RNA|PTBP2_uc001drs.1_Missense_Mutation_p.P82S|PTBP2_uc001drt.2_Missense_Mutation_p.P82S	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	463	RRM 4.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		ATCTAATATCCCGTAAGTATA	0.308													11	16					0	0	0.000978	0	0
DPYD	1806	broad.mit.edu	37	1	97564164	97564164	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:97564164G>A	uc001drv.2	-	21	2784	c.2647C>T	c.(2647-2649)CTG>TTG	p.L883L		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	883					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CGCTGTTCCAGATAAGGTCCA	0.338													9	15					0	0	0.006214	0	0
DPYD	1806	broad.mit.edu	37	1	97981487	97981487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:97981487C>T	uc001drv.2	-	13	1672	c.1535G>A	c.(1534-1536)GGA>GAA	p.G512E		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	512					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AACGGAAGCTCCATATTGTGA	0.363													7	12					0	0	0.001984	0	0
COL11A1	1301	broad.mit.edu	37	1	103352475	103352475	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:103352475G>A	uc001dul.2	-	63	5064	c.4746C>T	c.(4744-4746)TCC>TCT	p.S1582S	COL11A1_uc001duk.2_Silent_p.S778S|COL11A1_uc001dum.2_Silent_p.S1594S|COL11A1_uc001dun.2_Silent_p.S1543S|COL11A1_uc009weh.2_Silent_p.S1466S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1582	Fibrillar collagen NC1.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGGAATTGAGGGAACCAAATA	0.418													22	47					0	0	0.002780	0	0
WDR47	22911	broad.mit.edu	37	1	109554153	109554153	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:109554153A>G	uc001dwj.2	-	5	891	c.515T>C	c.(514-516)GTT>GCT	p.V172A	WDR47_uc001dwl.2_Missense_Mutation_p.V179A|WDR47_uc001dwi.2_Missense_Mutation_p.V172A|WDR47_uc001dwk.2_Missense_Mutation_p.V144A|WDR47_uc010ovf.1_Missense_Mutation_p.V99A	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	172										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GAATTCTGCAACCATGACACA	0.438													148	265					0	0	0.003610	0	0
SARS	6301	broad.mit.edu	37	1	109774338	109774338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:109774338C>T	uc001dwu.1	+	6	752	c.677C>T	c.(676-678)CCC>CTC	p.P226L	SARS_uc001dwt.1_Missense_Mutation_p.P226L|SARS_uc001dwv.1_Missense_Mutation_p.P226L|SARS_uc001dww.1_Missense_Mutation_p.P159L|SARS_uc001dwx.1_Missense_Mutation_p.P178L|SARS_uc009wfa.1_Missense_Mutation_p.P226L|SARS_uc001dwy.1_Missense_Mutation_p.P51L|SARS_uc001dwz.1_Missense_Mutation_p.P51L	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	226					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	ATTTATACCCCCTTTTTCATG	0.522													179	328					0	0	0.003610	0	0
CELSR2	1952	broad.mit.edu	37	1	109794877	109794877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:109794877C>T	uc001dxa.3	+	1	2237	c.2176C>T	c.(2176-2178)CCG>TCG	p.P726S		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	726	Cadherin 6.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TGAGGACCGGCCGGCAGGCAC	0.577													82	175					0	0	0.003610	0	0
PSMA5	5686	broad.mit.edu	37	1	109968936	109968936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:109968936G>A	uc001dxn.2	-	1	102	c.17C>T	c.(16-18)TCT>TTT	p.S6F	PSMA5_uc010ovj.1_5'UTR	NM_002790	NP_002781	P28066	PSA5_HUMAN	proteasome alpha 5 subunit	6					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.045)|Colorectal(144;0.116)|Epithelial(280;0.187)|all cancers(265;0.196)|LUSC - Lung squamous cell carcinoma(189;0.235)		GTCGTACTCAGACCGGGTAAG	0.662													63	102					0	0	0.003610	0	0
CSF1	1435	broad.mit.edu	37	1	110466433	110466433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:110466433C>T	uc001dyu.2	+	6	1603	c.1190C>T	c.(1189-1191)CCC>CTC	p.P397L	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.P397L	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	397	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CTCAGAGACCCCCCGGAGCCA	0.662													14	25					0	0	0.004007	0	0
CSF1	1435	broad.mit.edu	37	1	110466588	110466588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:110466588C>T	uc001dyu.2	+	6	1758	c.1345C>T	c.(1345-1347)CGG>TGG	p.R449W	CSF1_uc001dyt.2_Intron|CSF1_uc001dyv.3_Intron|CSF1_uc001dyw.3_Missense_Mutation_p.R449W	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	449	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		CACCAGGGATCGGAGGAGCCC	0.647													25	25					0	0	0.004656	0	0
UBL4B	164153	broad.mit.edu	37	1	110655204	110655204	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:110655204G>A	uc001dzc.2	+	1	143	c.48G>A	c.(46-48)AAG>AAA	p.K16K		NM_203412	NP_981957	Q8N7F7	UBL4B_HUMAN	ubiquitin-like 4B	16	Ubiquitin-like.					cytoplasm				ovary(1)	1		all_cancers(81;1.14e-05)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0236)|all cancers(265;0.0823)|Epithelial(280;0.0917)|Colorectal(144;0.109)|LUSC - Lung squamous cell carcinoma(189;0.134)		GCAGTCTGAAGGTGTCAGGGC	0.592													21	38					0	0	0.001523	0	0
DDX20	11218	broad.mit.edu	37	1	112303708	112303708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:112303708C>T	uc001ebs.2	+	6	1280	c.923C>T	c.(922-924)CCA>CTA	p.P308L	DDX20_uc010owf.1_Missense_Mutation_p.P70L|DDX20_uc001ebt.2_5'UTR	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	308	Helicase C-terminal.				assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGCAGAATTCCATTTAATCAA	0.368													12	30					0	0	0.001368	0	0
PTPN22	26191	broad.mit.edu	37	1	114401651	114401651	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:114401651G>A	uc001eds.2	-	3	376	c.246C>T	c.(244-246)TCC>TCT	p.S82S	uc001edv.1_Intron|PTPN22_uc009wgq.2_Silent_p.S82S|PTPN22_uc010owo.1_5'UTR|PTPN22_uc001edt.2_Silent_p.S82S|PTPN22_uc009wgr.2_Silent_p.S82S|PTPN22_uc009wgs.2_Silent_p.S82S|PTPN22_uc001edu.2_Silent_p.S82S	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	82	Tyrosine-protein phosphatase.				negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGATGTAGCTGGAATCCTCAT	0.363													15	22					0	0	0.004007	0	0
AMPD1	270	broad.mit.edu	37	1	115222291	115222291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:115222291G>A	uc001efe.1	-	7	890	c.806C>T	c.(805-807)TCC>TTC	p.S269F	AMPD1_uc001eff.1_Missense_Mutation_p.S265F	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	269					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	CTGGAACTTGGAGGAGAGGAA	0.413													24	75					0	0	0.005443	0	0
NGF	4803	broad.mit.edu	37	1	115828696	115828696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:115828696C>T	uc001efu.1	-	3	890	c.721G>A	c.(721-723)GCC>ACC	p.A241T		NM_002506	NP_002497	P01138	NGF_HUMAN	nerve growth factor, beta polypeptide precursor	241					activation of MAPKK activity|activation of phospholipase C activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of cell cycle|nerve growth factor processing|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|Golgi lumen	growth factor activity|nerve growth factor receptor binding			upper_aerodigestive_tract(2)	2	Lung SC(450;0.211)	all_cancers(81;1.07e-06)|all_epithelial(167;4.43e-06)|all_lung(203;2.86e-05)|Lung NSC(69;4.99e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)	Clenbuterol(DB01407)	GCAGGTCAGGCTCTTCTCACA	0.552													15	34					0	0	0.004007	0	0
VANGL1	81839	broad.mit.edu	37	1	116206850	116206850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:116206850C>T	uc001efv.1	+	4	1044	c.773C>T	c.(772-774)ACC>ATC	p.T258I	VANGL1_uc009wgy.1_Missense_Mutation_p.T256I|VANGL1_uc001efw.1_Missense_Mutation_p.T258I	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	258	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GTCCGCTCCACCGATGGCGAG	0.597													5	11					0	0	0.000602	0	0
CD2	914	broad.mit.edu	37	1	117307122	117307122	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:117307122C>G	uc001egu.3	+	4	659	c.630C>G	c.(628-630)ATC>ATG	p.I210M	CD2_uc010owz.1_Missense_Mutation_p.I210M|CD2_uc010oxa.1_Missense_Mutation_p.S153C	NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	210	Helical; (Potential).				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	GTCTGGACATCTATCTCATCA	0.507													17	27					0	0	0.001523	0	0
CD2	914	broad.mit.edu	37	1	117311214	117311214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:117311214C>T	uc001egu.3	+	5	894	c.865C>T	c.(865-867)CGT>TGT	p.R289C		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	289	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	ACCTGGTCATCGTTCCCAGGC	0.587													14	21					0	0	0.003163	0	0
PTGFRN	5738	broad.mit.edu	37	1	117487679	117487679	+	Missense_Mutation	SNP	C	T	T	rs137888350	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:117487679C>T	uc001egv.1	+	3	934	c.797C>T	c.(796-798)GCC>GTC	p.A266V		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	266	Ig-like C2-type 2.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		CAAGAAAAGGCCGTGGAAGTT	0.527													6	19					0	0	0.001984	0	0
VTCN1	79679	broad.mit.edu	37	1	117753470	117753470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:117753470G>A	uc001ehb.2	-	1	80	c.8C>T	c.(7-9)TCC>TTC	p.S3F	VTCN1_uc001ehc.2_5'UTR|VTCN1_uc009whf.1_Missense_Mutation_p.S3F	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	3						integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		CTGCCCCAGGGAAGCCATGGC	0.557													16	33					0	0	0.004990	0	0
ZNF697	90874	broad.mit.edu	37	1	120168512	120168512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:120168512G>A	uc001ehy.1	-	2	326	c.212C>T	c.(211-213)CCC>CTC	p.P71L		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		GCAGATGTCGGGCACTGCTTC	0.502													9	17					0	0	0.006214	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767519	143767519	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:143767519G>A	uc001ejt.2	-	1	363	c.330C>T	c.(328-330)TCC>TCT	p.S110S		NM_001123068	NP_001116540	A2BFH1	PAL4G_HUMAN	peptidylprolyl isomerase A (cyclophilin A)-like	110	PPIase cyclophilin-type.				protein folding	cytoplasm	peptidyl-prolyl cis-trans isomerase activity				0						TGAAAAACTGGGAACCATTTG	0.478													16	305					0	0	0.003610	0	0
SEC22B	9554	broad.mit.edu	37	1	145115850	145115850	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:145115850C>T	uc001eml.1	+	7	749	c.609C>T	c.(607-609)TTC>TTT	p.F203F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron	NM_004892	NP_004883	O75396	SC22B_HUMAN	SEC22 vesicle trafficking protein homolog B	203	Helical; Anchor for type IV membrane protein; (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane|melanosome	protein binding				0						CTGTATTTTTCATCATGTTAA	0.413													19	237					0	0	0.001523	0	0
NBPF10	100132406	broad.mit.edu	37	1	145299842	145299842	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:145299842C>T	uc001end.3	+	6	926	c.891C>T	c.(889-891)CCC>CCT	p.P297P	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Silent_p.P297P|NBPF10_uc010oyi.1_5'Flank|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	297											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AATTGCGCCCCCAGCTGGCAG	0.478													50	348					0	0	0.003610	0	0
POLR3GL	84265	broad.mit.edu	37	1	145456714	145456715	+	Missense_Mutation	DNP	AA	TC	TC			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:145456714_145456715AA>TC	uc001enp.1	-	8	686_687	c.579_580TT>GA	c.(577-582)GATTAC>GAGAAC	p.193_194DY>EN	NBPF10_uc001emp.3_Intron	NM_032305	NP_115681	Q9BT43	RPC7L_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	193_194											0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GACATGATGTAATCAGTTTCCT	0.411													42	107					0	0	0.004672	0	0
ANKRD35	148741	broad.mit.edu	37	1	145555703	145555703	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:145555703G>A	uc001eob.1	+	2	159	c.51G>A	c.(49-51)TGG>TGA	p.W17*	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_5'UTR	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	17										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TGGAGAGATGGAACCGCCATG	0.567													6	52					0	0	0.003080	0	0
PIAS3	10401	broad.mit.edu	37	1	145578202	145578202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:145578202G>A	uc001eoc.1	+	2	256	c.165G>A	c.(163-165)ATG>ATA	p.M55I	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Missense_Mutation_p.M46I|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	55					positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTGTCCAGATGAAGATCAAAG	0.587													119	57					0	0	0.003610	0	0
FCGR1A	2209	broad.mit.edu	37	1	149755750	149755750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:149755750G>A	uc001esp.3	+	3	294	c.244G>A	c.(244-246)GAA>AAA	p.E82K	HIST2H2BF_uc010pbj.1_Intron|FCGR1A_uc009wlg.2_RNA|FCGR1A_uc009wlh.1_RNA	NM_000566	NP_000557	P12314	FCGR1_HUMAN	Fc fragment of IgG, high affinity Ia, receptor	82	Extracellular (Potential).|Ig-like C2-type 1.				interferon-gamma-mediated signaling pathway|phagocytosis, engulfment	integral to membrane|plasma membrane	IgG binding|receptor activity|receptor signaling protein activity			ovary(1)	1	Breast(34;0.0124)|all_hematologic(923;0.127)				Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Methyl aminolevulinate(DB00992)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Porfimer(DB00707)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TGACAGTGGTGAATACAGGTG	0.547													20	56					0	0	0.001216	0	0
VPS45	11311	broad.mit.edu	37	1	150054811	150054811	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:150054811G>A	uc001etp.2	+	10	1521	c.948G>A	c.(946-948)GAG>GAA	p.E316E	VPS45_uc010pbp.1_RNA|VPS45_uc010pbq.1_Silent_p.E280E|VPS45_uc010pbs.1_Silent_p.E211E|VPS45_uc001etq.2_Silent_p.E136E|VPS45_uc009wlm.1_Silent_p.E292E	NM_007259	NP_009190	Q9NRW7	VPS45_HUMAN	vacuolar protein sorting 45A	316					blood coagulation|intracellular protein transport|vesicle docking involved in exocytosis	endosome membrane|Golgi membrane|integral to membrane of membrane fraction				central_nervous_system(1)|skin(1)	2	Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CGTTTGTTGAGAATTATCCAC	0.463													29	120					0	0	0.003271	0	0
C1orf51	148523	broad.mit.edu	37	1	150259285	150259285	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:150259285C>T	uc001euh.2	+	6	1213	c.1077C>T	c.(1075-1077)GCC>GCT	p.A359A	C1orf51_uc001eui.2_Silent_p.A271A|C1orf51_uc001euj.2_Silent_p.A359A	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	359											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCACCTTGGCCAGAAAGATGA	0.537													20	84					0	0	0.001523	0	0
CTSS	1520	broad.mit.edu	37	1	150720314	150720314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:150720314C>T	uc001evn.2	-	7	968	c.835G>A	c.(835-837)GGT>AGT	p.G279S	CTSS_uc010pcj.1_Missense_Mutation_p.G229S	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	279					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			ACAAGTACACCATGATTCACA	0.348													71	39					0	0	0.003610	0	0
GABPB2	126626	broad.mit.edu	37	1	151062929	151062929	+	Silent	SNP	C	T	T	rs145271934		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151062929C>T	uc001ewr.2	+	3	487	c.156C>T	c.(154-156)TCC>TCT	p.S52S	GABPB2_uc010pcp.1_Silent_p.S68S|GABPB2_uc001ews.2_Intron|GABPB2_uc001ewt.2_5'Flank	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	52	ANK 2.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		GTCATTATTCCACAGCAGAAG	0.418													45	18					0	0	0.003610	0	0
RFX5	5993	broad.mit.edu	37	1	151314837	151314837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151314837G>A	uc001exv.1	-	11	1890	c.1676C>T	c.(1675-1677)CCC>CTC	p.P559L	RFX5_uc001exw.1_Missense_Mutation_p.P559L|RFX5_uc009wmr.1_Missense_Mutation_p.P559L|RFX5_uc010pcx.1_Missense_Mutation_p.P519L	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	559						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGGGACCAAGGGAATTTTATC	0.522													26	120					0	0	0.004656	0	0
CGN	57530	broad.mit.edu	37	1	151498197	151498197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151498197C>T	uc009wmw.2	+	9	1838	c.1694C>T	c.(1693-1695)TCA>TTA	p.S565L		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	559	Glu-rich.|Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			GAGGAGACTTCAGAGGAGACA	0.552													36	25					0	0	0.006230	0	0
TDRKH	11022	broad.mit.edu	37	1	151749052	151749052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151749052G>A	uc009wnb.1	-	7	1089	c.907C>T	c.(907-909)CAT>TAT	p.H303Y	TDRKH_uc001eyy.2_Missense_Mutation_p.H79Y|TDRKH_uc001ezb.3_Missense_Mutation_p.H299Y|TDRKH_uc001ezc.3_Missense_Mutation_p.H258Y|TDRKH_uc001eza.3_Missense_Mutation_p.H303Y|TDRKH_uc001ezd.3_Missense_Mutation_p.H303Y|TDRKH_uc010pdn.1_Missense_Mutation_p.H79Y	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	303							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCATCAGCATGAAAACTGAAG	0.498													43	28					0	0	0.003214	0	0
TDRKH	11022	broad.mit.edu	37	1	151751458	151751458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151751458C>T	uc009wnb.1	-	6	768	c.586G>A	c.(586-588)GAA>AAA	p.E196K	TDRKH_uc001eyy.2_5'UTR|TDRKH_uc001ezb.3_Missense_Mutation_p.E192K|TDRKH_uc001ezc.3_Missense_Mutation_p.E151K|TDRKH_uc001eza.3_Missense_Mutation_p.E196K|TDRKH_uc001ezd.3_Missense_Mutation_p.E196K|TDRKH_uc010pdn.1_5'UTR	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	196							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TCTTCATCTTCTGAAACTTTC	0.428													62	21					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	1	151992775	151992775	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:151992775G>A	uc001ezm.1	+	9		c.2440G>A								Homo sapiens cDNA FLJ43896 fis, clone TESTI4009752.																		ATTCAAGGACGAGAAGCTTGC	0.537													28	212					0	0	0.002445	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058541	152058541	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152058541G>A	uc001ezo.1	-	3	1682	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	539							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CACTCTGTGTGAATGGTGACT	0.527													24	91					0	0	0.003954	0	0
HRNR	388697	broad.mit.edu	37	1	152191892	152191892	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152191892C>T	uc001ezt.1	-	3	2289	c.2213G>A	c.(2212-2214)AGG>AAG	p.R738K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	738	7.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTTCACTCCTAGATGACTG	0.557													51	193					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152282024	152282024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152282024C>T	uc001ezu.1	-	3	5374	c.5338G>A	c.(5338-5340)GGA>AGA	p.G1780R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1780	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGTGCGTCCATGGGCGGAC	0.602									Ichthyosis				173	99					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152287816	152287816	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152287816C>T	uc001ezu.1	-	2	153	c.117G>A	c.(115-117)AAG>AAA	p.K39K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	39	EF-hand 1.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity	p.K39N(1)		ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCGAAATTCCTTTTCCAGAA	0.328									Ichthyosis				38	118					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152323862	152323862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152323862C>T	uc001ezw.3	-	3	6473	c.6400G>A	c.(6400-6402)GGA>AGA	p.G2134R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2134	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGACTCTCCATGTTGAGAT	0.522													89	340					0	0	0.003610	0	0
CRNN	49860	broad.mit.edu	37	1	152382958	152382958	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:152382958C>T	uc001ezx.2	-	3	674	c.600G>A	c.(598-600)AGG>AGA	p.R200R		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	200	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTCTGATTCCTCTTGCCTT	0.542													142	179					0	0	0.003610	0	0
LELP1	149018	broad.mit.edu	37	1	153177437	153177437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153177437C>T	uc001fbl.2	+	2	364	c.254C>T	c.(253-255)TCC>TTC	p.S85F		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	85	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCCCTTCATCCTGCCCACAT	0.642													6	27					0	0	0.001168	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153270486	153270486	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153270486G>A	uc001fbn.1	-	7	1025	c.972C>T	c.(970-972)TCC>TCT	p.S324S		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	324					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTGCCCAGGGGACAGGATGT	0.592													142	72					0	0	0.003610	0	0
S100A12	6283	broad.mit.edu	37	1	153346438	153346438	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153346438G>A	uc001fbr.1	-	3	212	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_005621	NP_005612	P80511	S10AC_HUMAN	S100 calcium-binding protein A12	48	EF-hand 1.				defense response to bacterium|defense response to fungus|inflammatory response|innate immune response|killing of cells of other organism|positive regulation of I-kappaB kinase/NF-kappaB cascade|xenobiotic metabolic process	cytosol|extracellular region|insoluble fraction|nucleus	calcium ion binding|RAGE receptor binding|zinc ion binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)		Amlexanox(DB01025)	CTTTATCTTTGATATTCTAGG	0.443													26	31					0	0	0.006320	0	0
S100A7L2	645922	broad.mit.edu	37	1	153409565	153409565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153409565C>T	uc010pdx.1	-	3	386	c.308G>A	c.(307-309)GGA>GAA	p.G103E		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGTGCCACTCCATGCATTAT	0.468													48	173					0	0	0.003610	0	0
C1orf77	26097	broad.mit.edu	37	1	153614878	153614878	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153614878C>T	uc001fcm.1	+	4	688	c.376C>T	c.(376-378)CTA>TTA	p.L126L	C1orf77_uc001fcn.1_Silent_p.L127L|C1orf77_uc001fco.1_Silent_p.L101L|C1orf77_uc001fcp.2_5'Flank|C1orf77_uc009woj.1_Silent_p.L126L	NM_015607	NP_056422	Q9Y3Y2	CHTOP_HUMAN	small protein rich in arginine and glycine	126	Arg/Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	protein binding|RNA binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCAGAACCCTACTTAGGGG	0.602													26	82					0	0	0.005443	0	0
DENND4B	9909	broad.mit.edu	37	1	153906740	153906740	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153906740G>A	uc001fdd.1	-	19	3213	c.2812C>T	c.(2812-2814)CAG>TAG	p.Q938*	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	938										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTCTGGCGCTGAAGAGGGCGA	0.612													7	4					0	0	0.004482	0	0
CRTC2	200186	broad.mit.edu	37	1	153924553	153924553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:153924553G>A	uc010ped.1	-	10	1008	c.938C>T	c.(937-939)ACC>ATC	p.T313I	CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_5'UTR	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	313					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GTGAGTCATGGTGTGGGTCAA	0.622													20	88					0	0	0.001523	0	0
TDRD10	126668	broad.mit.edu	37	1	154516548	154516548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:154516548C>T	uc009wow.2	+	9	1451	c.613C>T	c.(613-615)CCG>TCG	p.P205S	TDRD10_uc001ffd.2_Missense_Mutation_p.P205S|TDRD10_uc001ffe.2_Missense_Mutation_p.P126S	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	205							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GAGTATCGTCCCGAAGACCCC	0.627													36	63					0	0	0.004289	0	0
KCNN3	3782	broad.mit.edu	37	1	154705554	154705554	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:154705554G>A	uc001ffp.2	-	4	1829	c.1515C>T	c.(1513-1515)TTC>TTT	p.F505F	KCNN3_uc001ffo.2_Silent_p.F200F	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	510						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			CAATGGAAAGGAATGTGATGG	0.522													52	28					0	0	0.003610	0	0
PBXIP1	57326	broad.mit.edu	37	1	154920149	154920149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:154920149G>A	uc001ffr.2	-	8	766	c.707C>T	c.(706-708)CCC>CTC	p.P236L	PBXIP1_uc001ffs.2_Missense_Mutation_p.P207L|PBXIP1_uc010pep.1_Missense_Mutation_p.P81L	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	236					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CAGCACCTCGGGGTCTGGGAG	0.632													18	77					0	0	0.002299	0	0
FLAD1	80308	broad.mit.edu	37	1	154965400	154965400	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:154965400G>T	uc001fgf.1	+	7	2005	c.1651G>T	c.(1651-1653)GAG>TAG	p.E551*	FLAD1_uc001fge.1_Nonsense_Mutation_p.E454*|FLAD1_uc001fgg.1_3'UTR|FLAD1_uc001fgh.1_3'UTR|LENEP_uc001fgi.2_5'Flank	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	551	FAD synthase.				FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGGAGTCGGGAGAATACCGT	0.597													6	16					0.00198382	0.00285026	0.001984	1	0
ASH1L	55870	broad.mit.edu	37	1	155449894	155449894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:155449894C>T	uc009wqq.2	-	3	3247	c.2767G>A	c.(2767-2769)GAA>AAA	p.E923K	ASH1L_uc001fkt.2_Missense_Mutation_p.E923K|ASH1L_uc009wqr.1_Missense_Mutation_p.E923K	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	923					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTTTCAGATTCTAGCTTGCTT	0.473													31	103					0	0	0.002445	0	0
ASH1L	55870	broad.mit.edu	37	1	155451426	155451426	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:155451426G>T	uc009wqq.2	-	3	1715	c.1235C>A	c.(1234-1236)CCT>CAT	p.P412H	ASH1L_uc001fkt.2_Missense_Mutation_p.P412H|ASH1L_uc009wqr.1_Missense_Mutation_p.P412H	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	412					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ACCTGCCAAAGGACAACTCAT	0.438													18	87					5.3912e-06	7.79826e-06	0.006122	1	0
UBQLN4	56893	broad.mit.edu	37	1	156013896	156013896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156013896G>A	uc001fna.2	-	6	1043	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	UBQLN4_uc010pgx.1_Missense_Mutation_p.S320F	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	340						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					GGGGGCCTGGGAGGTGGGGGG	0.687													4	18					0	0	0.000248	0	0
LMNA	4000	broad.mit.edu	37	1	156106056	156106056	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156106056C>T	uc001fni.2	+	7	1458	c.1209C>T	c.(1207-1209)TCC>TCT	p.S403S	LMNA_uc001fnf.1_Silent_p.S403S|LMNA_uc001fng.2_Silent_p.S403S|LMNA_uc001fnh.2_Silent_p.S403S|LMNA_uc009wro.1_Silent_p.S403S|LMNA_uc010pgz.1_Silent_p.S291S|LMNA_uc001fnj.2_Silent_p.S322S|LMNA_uc001fnk.2_Silent_p.S304S|LMNA_uc009wrp.2_Missense_Mutation_p.P131L|LMNA_uc010pha.1_Silent_p.S59S	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	403	Tail.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					GCCGTGCTTCCTCTCACTCAT	0.642									Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				51	44					0	0	0.003610	0	0
SEMA4A	64218	broad.mit.edu	37	1	156142688	156142688	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156142688G>A	uc001fnl.2	+	11	1310	c.1206G>A	c.(1204-1206)GTG>GTA	p.V402V	SEMA4A_uc009wrq.2_Silent_p.V402V|SEMA4A_uc001fnm.2_Silent_p.V402V|SEMA4A_uc001fnn.2_Silent_p.V270V|SEMA4A_uc001fno.2_Silent_p.V402V	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	402	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					ATGAGCAAGTGGTGGGGACGC	0.572													59	60					0	0	0.003610	0	0
RHBG	57127	broad.mit.edu	37	1	156347844	156347844	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156347844G>A	uc010pho.1	+	3	476	c.438G>A	c.(436-438)AAG>AAA	p.K146K	RHBG_uc010phm.1_Intron|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Silent_p.K77K|RHBG_uc009wrz.2_Silent_p.K77K|RHBG_uc001for.2_Silent_p.K116K	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	146	Cytoplasmic (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					TCCTGGGCAAGACCGGGCCTA	0.602													28	62					0	0	0.001512	0	0
TTC24	164118	broad.mit.edu	37	1	156554673	156554673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156554673C>T	uc009wsc.1	+	5	556	c.416C>T	c.(415-417)TCG>TTG	p.S139L		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	419							binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCCCAGACTTCGGCTCCGGGA	0.582													15	1					0	0	0.004007	0	0
NES	10763	broad.mit.edu	37	1	156639569	156639569	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156639569C>A	uc001fpq.2	-	4	4544	c.4411G>T	c.(4411-4413)GAC>TAC	p.D1471Y		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1471	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTCAAGCTGTCATCCCAGGGG	0.612													17	51					2.39187e-15	3.48337e-15	0.001216	1	0
NES	10763	broad.mit.edu	37	1	156640912	156640912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156640912C>T	uc001fpq.2	-	4	3201	c.3068G>A	c.(3067-3069)AGA>AAA	p.R1023K		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1023	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AACCAGGCCTCTCTGCTCTTT	0.657													186	75					0	0	0.003610	0	0
NTRK1	4914	broad.mit.edu	37	1	156848978	156848978	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156848978C>T	uc001fqh.1	+	15	1926	c.1870C>T	c.(1870-1872)CTG>TTG	p.L624L	NTRK1_uc001fqf.1_Silent_p.L588L|NTRK1_uc009wsi.1_Silent_p.L323L|NTRK1_uc001fqi.1_Silent_p.L618L|NTRK1_uc009wsk.1_Silent_p.L621L	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	624	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CCCCCTGGGTCTGGGGCAGCT	0.637			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			24	8					0	0	0.003330	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156925567	156925567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:156925567C>T	uc001fqo.2	-	19	2616	c.1576G>A	c.(1576-1578)GAT>AAT	p.D526N	ARHGEF11_uc001fqn.2_Missense_Mutation_p.D566N|ARHGEF11_uc001fqp.1_Missense_Mutation_p.D55N	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	526					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCCAAGGCATCCTTTTCTTTC	0.498													149	216					0	0	0.003610	0	0
ETV3	2117	broad.mit.edu	37	1	157103994	157103994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:157103994G>A	uc001fqr.2	-	4	599	c.310C>T	c.(310-312)CAT>TAT	p.H104Y	ETV3_uc001fqt.2_Missense_Mutation_p.H104Y	NM_001145312	NP_001138784	P41162	ETV3_HUMAN	ets variant gene 3 isoform 1	104	ETS.						sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(266;0.158)	Prostate(1639;0.174)				TTTGTTTTATGAAGGATCCTC	0.373													8	45					0	0	0.004482	0	0
FCRL4	83417	broad.mit.edu	37	1	157556094	157556094	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:157556094C>T	uc001fqw.2	-	6	1135	c.999G>A	c.(997-999)GGG>GGA	p.G333G	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	333	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GAGTTTTCCTCCCCAGACTCT	0.582													51	36					0	0	0.003610	0	0
FCRL4	83417	broad.mit.edu	37	1	157559215	157559215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:157559215G>A	uc001fqw.2	-	3	222	c.86C>T	c.(85-87)CCT>CTT	p.P29L	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	29	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GGTCCATGGAGGATGGACGGA	0.493													35	13					0	0	0.003271	0	0
KIRREL	55243	broad.mit.edu	37	1	158063217	158063217	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158063217C>T	uc001frn.3	+	12	1964	c.1560C>T	c.(1558-1560)CTC>CTT	p.L520L	KIRREL_uc010pib.1_Silent_p.L420L|KIRREL_uc009wsq.2_Silent_p.L356L|KIRREL_uc001fro.3_Silent_p.L334L	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	520	Helical; (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					TATTCTTCCTCTACCGGCGCC	0.602													22	94					0	0	0.001882	0	0
CD1E	913	broad.mit.edu	37	1	158325175	158325175	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158325175C>T	uc001fse.2	+	3	680	c.441C>T	c.(439-441)TTC>TTT	p.F147F	CD1E_uc010pid.1_Silent_p.F145F|CD1E_uc010pie.1_Silent_p.F48F|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Silent_p.F147F|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.F147F|CD1E_uc001fry.2_Silent_p.F147F|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Silent_p.F147F|CD1E_uc009wsv.2_Silent_p.F48F|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	147					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GGTCAGATTTCCTGAGTTTCC	0.468													29	101					0	0	0.007291	0	0
OR10T2	128360	broad.mit.edu	37	1	158368976	158368976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158368976G>A	uc010pih.1	-	1	281	c.281C>T	c.(280-282)TCC>TTC	p.S94F		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GGCCATGAAGGAGATGGTCTT	0.478													13	35					0	0	0.001855	0	0
OR10K2	391107	broad.mit.edu	37	1	158390395	158390395	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158390395G>A	uc010pii.1	-	1	262	c.262C>T	c.(262-264)CAG>TAG	p.Q88*		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GTCTTCTTCTGGGACAGCAGG	0.483													67	84					0	0	0.003610	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517128	158517128	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158517128G>A	uc010pil.1	-	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCATGGAATAGAAGAGAATTA	0.502													67	29					0	0	0.003610	0	0
OR10X1	128367	broad.mit.edu	37	1	158549150	158549150	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158549150G>A	uc010pin.1	-	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					AAGAGTCCCTGAATATCAGTG	0.443													7	49					0	0	0.004482	0	0
SPTA1	6708	broad.mit.edu	37	1	158584062	158584062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158584062C>T	uc001fst.1	-	49	7022	c.6823G>A	c.(6823-6825)GAA>AAA	p.E2275K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2275	EF-hand 1.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTGCTAAATTCCTTTAGAGTC	0.289													47	19					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158590148	158590148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158590148C>T	uc001fst.1	-	44	6428	c.6229G>A	c.(6229-6231)GAA>AAA	p.E2077K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2077	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGCCGAATTTCATTCAGGGAG	0.473													7	44					0	0	0.004482	0	0
SPTA1	6708	broad.mit.edu	37	1	158590154	158590154	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158590154G>A	uc001fst.1	-	44	6422	c.6223C>T	c.(6223-6225)CTG>TTG	p.L2075L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2075	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					ATTTCATTCAGGGAGACACAG	0.483													19	27					0	0	0.001216	0	0
SPTA1	6708	broad.mit.edu	37	1	158596650	158596650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158596650C>T	uc001fst.1	-	41	6011	c.5812G>A	c.(5812-5814)GAT>AAT	p.D1938N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1938	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTACCACATCAGCCTTCCAG	0.468													67	103					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158632567	158632567	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158632567G>A	uc001fst.1	-	17	2588	c.2389C>T	c.(2389-2391)CTG>TTG	p.L797L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	797	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTACAAATCAGCTGCAGATGG	0.512													41	18					0	0	0.001951	0	0
OR6K2	81448	broad.mit.edu	37	1	158670177	158670177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158670177C>T	uc001fsu.1	-	1	266	c.266G>A	c.(265-267)AGG>AAG	p.R89K		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GGAAATGCTCCTCTCACTAAG	0.458													50	17					0	0	0.003610	0	0
OR6K6	128371	broad.mit.edu	37	1	158725577	158725577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:158725577G>A	uc001fsw.1	+	1	972	c.972G>A	c.(970-972)ATG>ATA	p.M324I		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	324	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					ACAAGGACATGAAAGAGGCTA	0.453													28	109					0	0	0.002445	0	0
FCER1A	2205	broad.mit.edu	37	1	159277645	159277645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:159277645C>T	uc001ftq.2	+	6	796	c.697C>T	c.(697-699)CTC>TTC	p.L233F		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	233	Cytoplasmic (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	GGTCACATTTCTCTTGAAGAT	0.388													16	53					0	0	0.004007	0	0
SLAMF8	56833	broad.mit.edu	37	1	159799844	159799844	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:159799844C>T	uc001fue.3	+	2	439	c.229C>T	c.(229-231)CTG>TTG	p.L77L		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	77	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					TTCCCGCTTCCTGGGCCGAGC	0.612													31	130					0	0	0.001786	0	0
SLAMF1	6504	broad.mit.edu	37	1	160589632	160589632	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:160589632C>T	uc001fwl.3	-	5	1144	c.798G>A	c.(796-798)ACG>ACA	p.T266T	SLAMF1_uc010pjk.1_Intron|SLAMF1_uc010pjl.1_Intron|SLAMF1_uc010pjm.1_Intron	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	266	Cytoplasmic (Potential).|Ig-like V-type.				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			GGTAATGGTTCGTTTTACCTG	0.438													27	122					0	0	0.005443	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022449	161022449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161022449G>A	uc001fxl.2	-	7	1149	c.803C>T	c.(802-804)CCC>CTC	p.P268L	ARHGAP30_uc001fxk.2_Missense_Mutation_p.P268L|ARHGAP30_uc001fxm.2_Missense_Mutation_p.P114L|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Missense_Mutation_p.P114L	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	268					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			AGTATGGTAGGGCCGCATCTG	0.592													6	29					0	0	0.001168	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161024435	161024435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161024435C>T	uc001fxl.2	-	4	752	c.406G>A	c.(406-408)GAA>AAA	p.E136K	ARHGAP30_uc001fxk.2_Missense_Mutation_p.E136K|ARHGAP30_uc001fxm.2_5'UTR|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_5'UTR	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	136	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			ACAGGGAGTTCCCGAAGCACC	0.522													27	101					0	0	0.001786	0	0
PVRL4	81607	broad.mit.edu	37	1	161047418	161047418	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161047418C>T	uc001fxo.2	-	3	854	c.555G>A	c.(553-555)ACG>ACA	p.T185T	PVRL4_uc010pjz.1_5'Flank	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	185	Ig-like C2-type 1.|Extracellular (Potential).		T -> M (in EDSS1).		adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CTTTGACCTCCGTGTCCCAGG	0.637													41	24					0	0	0.006999	0	0
PVRL4	81607	broad.mit.edu	37	1	161049730	161049730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161049730G>A	uc001fxo.2	-	2	388	c.89C>T	c.(88-90)CCC>CTC	p.P30L		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	30					adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CTCACCCGCGGGGCACCGGCC	0.632													29	45					0	0	0.003271	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161166022	161166022	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161166022C>T	uc001fyt.3	-	3	1457	c.1029G>A	c.(1027-1029)CGG>CGA	p.R343R	ADAMTS4_uc001fyu.2_3'UTR	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	343	Peptidase M12B.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TGGCACAGCTCCGAGCCGGGT	0.557													12	57					0	0	0.001368	0	0
ATF6	22926	broad.mit.edu	37	1	161761236	161761236	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161761236C>T	uc001gbr.2	+	5	460	c.393C>T	c.(391-393)CCC>CCT	p.P131P	ATF6_uc001gbq.1_Silent_p.P131P	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	131	Cytoplasmic (Potential).|Transcription activation.				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			AGATGTCTCCCCTTTCCTTAT	0.388													20	70					0	0	0.002299	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953801	161953801	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161953801C>T	uc001gbu.2	-	8	2341	c.1917G>A	c.(1915-1917)GAG>GAA	p.E639E	OLFML2B_uc001gbt.2_Silent_p.E122E|OLFML2B_uc010pkq.1_Silent_p.E640E	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	639	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			GGCTGAAGCCCTCATCGTCCA	0.617													15	39					0	0	0.004007	0	0
OLFML2B	25903	broad.mit.edu	37	1	161970019	161970020	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:161970019_161970020GG>AA	uc001gbu.2	-	5	1256_1257	c.832_833CC>TT	c.(832-834)CCC>TTC	p.P278F	OLFML2B_uc010pkq.1_Missense_Mutation_p.P279F	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	278										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			CCTCTGCAGGGGCCGCTGTGAC	0.599													53	24					0	0	0.004672	0	0
DDR2	4921	broad.mit.edu	37	1	162746107	162746107	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:162746107C>T	uc001gcf.2	+	17	2695	c.2230C>T	c.(2230-2232)CAG>TAG	p.Q744*	DDR2_uc001gcg.2_Nonsense_Mutation_p.Q744*	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	744	Cytoplasmic (Potential).|Protein kinase.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			TTACCGGATCCAGGGCCGGGC	0.493													28	120					0	0	0.002445	0	0
RGS4	5999	broad.mit.edu	37	1	163042204	163042204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:163042204C>T	uc009wuy.2	+	2	575	c.64C>T	c.(64-66)CGG>TGG	p.R22W	RGS4_uc001gcl.3_Missense_Mutation_p.R119W|RGS4_uc009wuz.2_Missense_Mutation_p.R22W|RGS4_uc009wva.2_Missense_Mutation_p.R4W	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	22					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						TATGAAACATCGGCTAGGTTT	0.378													8	30					0	0	0.004482	0	0
LMX1A	4009	broad.mit.edu	37	1	165218703	165218703	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:165218703C>T	uc001gcy.1	-	3	659	c.438G>A	c.(436-438)GGG>GGA	p.G146G	LMX1A_uc001gcz.1_Silent_p.G146G	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	146	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					TCTCATAGTCCCCTTTGCAGA	0.612													48	32					0	0	0.003610	0	0
LMX1A	4009	broad.mit.edu	37	1	165322368	165322368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:165322368C>T	uc001gcy.1	-	2	429	c.208G>A	c.(208-210)GAG>AAG	p.E70K	LMX1A_uc001gcz.1_Missense_Mutation_p.E70K	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	70	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CAGGTGGTCTCCAGGGGCTCT	0.612													63	26					0	0	0.003610	0	0
ILDR2	387597	broad.mit.edu	37	1	166896415	166896415	+	Missense_Mutation	SNP	G	A	A	rs142876093	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:166896415G>A	uc001gdx.1	-	7	939	c.883C>T	c.(883-885)CGC>TGC	p.R295C		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	295	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						TAACCTTTGCGAACTGTTGAG	0.438													25	77					0	0	0.006320	0	0
MAEL	84944	broad.mit.edu	37	1	166973452	166973452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:166973452G>A	uc001gdy.1	+	6	630	c.559G>A	c.(559-561)GAA>AAA	p.E187K	MAEL_uc001gdz.1_Missense_Mutation_p.E156K|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	187					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						TTCAAATTTTGAACGTGGGCA	0.378													38	90					0	0	0.002522	0	0
DCAF6	55827	broad.mit.edu	37	1	168044630	168044630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:168044630C>T	uc001gew.2	+	19	2782	c.2540C>T	c.(2539-2541)TCA>TTA	p.S847L	DCAF6_uc001gev.2_Missense_Mutation_p.S867L|DCAF6_uc001gex.2_Missense_Mutation_p.S938L|DCAF6_uc010plk.1_Missense_Mutation_p.S907L|DCAF6_uc001gey.2_Missense_Mutation_p.S720L|DCAF6_uc001gez.2_Missense_Mutation_p.S150L	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	847					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GGTGACAGATCAGAAGGCTCT	0.318													10	9					0	0	0.001855	0	0
SELL	6402	broad.mit.edu	37	1	169672473	169672473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:169672473C>T	uc001ggk.2	-	6	1073	c.875G>A	c.(874-876)GGA>GAA	p.G292E	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.G245E|SELL_uc001ggl.1_Missense_Mutation_p.G305E	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	292	Extracellular (Potential).|Sushi 2.				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					TAACTCAGTTCCTTCTGAGCA	0.438													30	12					0	0	0.007291	0	0
FMO3	2328	broad.mit.edu	37	1	171079971	171079971	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:171079971G>A	uc001ghi.2	+	6	771	c.660G>A	c.(658-660)GTG>GTA	p.V220V	FMO3_uc001ghh.2_Silent_p.V220V|FMO3_uc010pmb.1_Silent_p.V200V|FMO3_uc010pmc.1_Silent_p.V157V	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	220					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GCTCCTGGGTGATGAGCCGGG	0.398													42	114					0	0	0.003610	0	0
FMO2	2327	broad.mit.edu	37	1	171162577	171162577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:171162577C>T	uc001ghk.1	+	3	353	c.236C>T	c.(235-237)CCA>CTA	p.P79L	FMO2_uc010pmd.1_5'UTR	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	79					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAAGATTTTCCAAACTTCCTG	0.353													20	62					0	0	0.001523	0	0
DNM3	26052	broad.mit.edu	37	1	172002338	172002338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:172002338C>T	uc001gie.2	+	6	958	c.782C>T	c.(781-783)TCC>TTC	p.S261F	DNM3_uc001gid.3_Missense_Mutation_p.S261F|DNM3_uc009wwb.2_Missense_Mutation_p.S261F|DNM3_uc001gif.2_Missense_Mutation_p.S261F	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	261					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TTTTTCCTTTCCCACCCGGCT	0.473													7	21					0	0	0.001984	0	0
DNM3	26052	broad.mit.edu	37	1	172100375	172100375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:172100375G>A	uc001gie.2	+	14	1782	c.1606G>A	c.(1606-1608)GGA>AGA	p.G536R	DNM3_uc001gid.3_Missense_Mutation_p.G536R|DNM3_uc009wwb.2_Missense_Mutation_p.G536R|DNM3_uc001gif.2_Missense_Mutation_p.G536R	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	546	PH.				endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CGGCTCGAAGGGATACTGGTT	0.433													6	42					0	0	0.003080	0	0
PIGC	5279	broad.mit.edu	37	1	172411146	172411146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:172411146G>A	uc001gil.2	-	2	898	c.617C>T	c.(616-618)GCC>GTC	p.A206V	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron|C1orf105_uc001gik.2_Intron|PIGC_uc001gin.2_Missense_Mutation_p.A206V|PIGC_uc001gio.2_Missense_Mutation_p.A206V	NM_153747	NP_714969	Q92535	PIGC_HUMAN	phosphatidylinositol glycan, class C	206					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			lung(1)	1						AATCTGAATGGCAAATGTCAC	0.498													14	78					0	0	0.004007	0	0
C1orf9	51430	broad.mit.edu	37	1	172558334	172558334	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:172558334T>C	uc001giq.3	+	18	2409	c.2093T>C	c.(2092-2094)GTT>GCT	p.V698A	C1orf9_uc010pmm.1_Missense_Mutation_p.V698A|C1orf9_uc009wwd.2_Missense_Mutation_p.V654A|C1orf9_uc010pmn.1_Intron|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	698					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GAAACTGTTGTTCTGGGTGAT	0.413													23	81					0	0	0.003330	0	0
SLC9A11	284525	broad.mit.edu	37	1	173517566	173517566	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:173517566T>C	uc001giz.2	-	12	1846	c.1423A>G	c.(1423-1425)ACC>GCC	p.T475A	SLC9A11_uc009wwe.2_Missense_Mutation_p.T33A|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	475					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TCTACTAAGGTCCAGTTAACA	0.363													50	17					0	0	0.003610	0	0
TNN	63923	broad.mit.edu	37	1	175046593	175046593	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:175046593C>T	uc001gkl.1	+	2	152	c.39C>T	c.(37-39)CTC>CTT	p.L13L	TNN_uc010pmx.1_Silent_p.L13L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	13					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTATGGGGCTCCTGCTTGGCT	0.567													27	89					0	0	0.001786	0	0
TNR	7143	broad.mit.edu	37	1	175306693	175306693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:175306693C>T	uc001gkp.1	-	17	3586	c.3505G>A	c.(3505-3507)GAT>AAT	p.D1169N	TNR_uc009wwu.1_Missense_Mutation_p.D1169N	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1169	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GTGGTCATATCACAGTACACT	0.512													37	29					0	0	0.006999	0	0
TNR	7143	broad.mit.edu	37	1	175324761	175324761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:175324761G>A	uc001gkp.1	-	15	3208	c.3127C>T	c.(3127-3129)CCT>TCT	p.P1043S	TNR_uc009wwu.1_Missense_Mutation_p.P1043S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1043	Fibronectin type-III 9.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TTTGCCGGAGGGTCCAGGACT	0.542													20	59					0	0	0.001523	0	0
RFWD2	64326	broad.mit.edu	37	1	175958589	175958589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:175958589G>A	uc001gku.1	-	16	2012	c.1756C>T	c.(1756-1758)CGT>TGT	p.R586C	RFWD2_uc001gkv.1_Missense_Mutation_p.R562C|RFWD2_uc001gkw.1_Missense_Mutation_p.R346C|RFWD2_uc009wwv.2_Missense_Mutation_p.R385C|RFWD2_uc001gkt.1_Missense_Mutation_p.R425C	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	586	WD 4.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						TTAGTGTTACGAAGATCATAG	0.348													9	55					0	0	0.004482	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525627	176525627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:176525627C>T	uc001gkz.2	+	2	1333	c.169C>T	c.(169-171)CGA>TGA	p.R57*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.R57*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	57					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCCAAGGTTCGAAGACCCAG	0.567													78	30					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668309	176668309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:176668309G>A	uc001gkz.2	+	8	3984	c.2820G>A	c.(2818-2820)ATG>ATA	p.M940I	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	940					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTACCACATGAACATGACGG	0.592													18	73					0	0	0.001216	0	0
ASTN1	460	broad.mit.edu	37	1	176905451	176905451	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:176905451G>A	uc001glc.2	-	15	2645	c.2433C>T	c.(2431-2433)GTC>GTT	p.V811V	ASTN1_uc001glb.1_Silent_p.V811V|ASTN1_uc001gld.1_Silent_p.V811V|ASTN1_uc009wwx.1_Silent_p.V811V	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	819					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCACAGACCGGACCTTCCAGT	0.507													17	41					0	0	0.001216	0	0
ASTN1	460	broad.mit.edu	37	1	176927515	176927515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:176927515C>T	uc001glc.2	-	10	1914	c.1702G>A	c.(1702-1704)GAC>AAC	p.D568N	ASTN1_uc001glb.1_Missense_Mutation_p.D568N|ASTN1_uc001gld.1_Missense_Mutation_p.D568N|ASTN1_uc009wwx.1_Missense_Mutation_p.D568N	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	576					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ACAGTCATGTCCGTCTTGCAC	0.537													20	29					0	0	0.002299	0	0
SEC16B	89866	broad.mit.edu	37	1	177937101	177937101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:177937101G>A	uc001gli.1	-	2	106	c.16C>T	c.(16-18)CCC>TCC	p.P6S	SEC16B_uc001glk.1_5'UTR|SEC16B_uc009wwz.1_5'UTR|SEC16B_uc001glj.1_Missense_Mutation_p.P6S|SEC16B_uc001gll.3_Missense_Mutation_p.P6S	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	6					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						AGCCTCTGGGGAGCCCAAAGT	0.498													7	26					0	0	0.004482	0	0
CEP350	9857	broad.mit.edu	37	1	180062207	180062207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:180062207C>T	uc001gnt.2	+	34	7350	c.6967C>T	c.(6967-6969)CAT>TAT	p.H2323Y	CEP350_uc009wxl.2_Missense_Mutation_p.H2322Y|CEP350_uc001gnv.2_Missense_Mutation_p.H458Y|CEP350_uc001gnw.1_Missense_Mutation_p.H80Y|CEP350_uc001gnx.1_Missense_Mutation_p.H80Y	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2323						centrosome|nucleus|spindle				ovary(4)	4						TGAAAATCTCCATAAAAGTGA	0.343													12	14					0	0	0.001855	0	0
QSOX1	5768	broad.mit.edu	37	1	180151443	180151443	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:180151443C>T	uc001gnz.2	+	6	816	c.741C>T	c.(739-741)TCC>TCT	p.S247S	QSOX1_uc001gny.2_Silent_p.S247S|QSOX1_uc001goa.2_Silent_p.S247S|QSOX1_uc001gob.1_RNA	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	247					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						GCTCTGTCTCCCGAGTCCCCG	0.602													107	57					0	0	0.003610	0	0
QSOX1	5768	broad.mit.edu	37	1	180163365	180163365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:180163365C>T	uc001gnz.2	+	11	1381	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F	QSOX1_uc001gny.2_Missense_Mutation_p.L436F|QSOX1_uc001goa.2_Missense_Mutation_p.L436F|QSOX1_uc001goc.2_5'UTR	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	436	ERV/ALR sulfhydryl oxidase.				cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CAAGGAGGTCCTCCCAGCCAT	0.672													6	26					0	0	0.001168	0	0
CACNA1E	777	broad.mit.edu	37	1	181548280	181548280	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:181548280T>C	uc001gow.2	+	5	854	c.689T>C	c.(688-690)TTT>TCT	p.F230S	CACNA1E_uc009wxr.2_Missense_Mutation_p.F137S|CACNA1E_uc009wxs.2_Missense_Mutation_p.F137S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	230	I.|Helical; Name=S5 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CTGCTCTTCTTTGCCATCCTG	0.453													110	59					0	0	0.003610	0	0
CACNA1E	777	broad.mit.edu	37	1	181620538	181620538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:181620538C>T	uc001gow.2	+	7	1181	c.1016C>T	c.(1015-1017)TCC>TTC	p.S339F	CACNA1E_uc009wxr.2_Missense_Mutation_p.S246F|CACNA1E_uc009wxs.2_Missense_Mutation_p.S246F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	339	I.|Helical; Name=S6 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATCATTGGATCCTTCTTTGTT	0.433													28	109					0	0	0.002096	0	0
CACNA1E	777	broad.mit.edu	37	1	181745324	181745324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:181745324G>A	uc001gow.2	+	38	5392	c.5227G>A	c.(5227-5229)GAG>AAG	p.E1743K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1631K|CACNA1E_uc001gox.1_Missense_Mutation_p.E969K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E969K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1743	EF-hand.|Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCACTTGGACGAGTTTGTCCG	0.607													29	136					0	0	0.007291	0	0
CACNA1E	777	broad.mit.edu	37	1	181759674	181759674	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:181759674C>T	uc001gow.2	+	44	6045	c.5880C>T	c.(5878-5880)TTC>TTT	p.F1960F	CACNA1E_uc009wxs.2_Silent_p.F1848F|CACNA1E_uc009wxt.2_Silent_p.F1186F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1960	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACGGACAGTTCCAAGAACGGC	0.473													9	55					0	0	0.006214	0	0
RNASEL	6041	broad.mit.edu	37	1	182544605	182544605	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:182544605G>A	uc001gpj.1	-	6	2315	c.2148C>T	c.(2146-2148)TTC>TTT	p.F716F	RNASEL_uc009wxz.1_Silent_p.F716F	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	716	KEN.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						GGGTTTGGGGGAAATGCTTTC	0.473									Hereditary_Prostate_Cancer				23	81					0	0	0.002780	0	0
PRG4	10216	broad.mit.edu	37	1	186269233	186269233	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:186269233C>T	uc001gru.3	+	3	138	c.87C>T	c.(85-87)AGC>AGT	p.S29S	PRG4_uc001grt.3_Intron|PRG4_uc009wyl.2_Silent_p.S29S|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	29	SMB 1.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ATTTATCAAGCTGTGCAGGGA	0.438													67	37					0	0	0.003610	0	0
PRG4	10216	broad.mit.edu	37	1	186281394	186281394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:186281394G>A	uc001gru.3	+	11	3932	c.3881G>A	c.(3880-3882)GGA>GAA	p.G1294E	PRG4_uc001grt.3_Missense_Mutation_p.G1253E|PRG4_uc009wyl.2_Missense_Mutation_p.G1201E|PRG4_uc009wym.2_Missense_Mutation_p.G1160E|PRG4_uc010poo.1_RNA|TPR_uc001grv.2_3'UTR	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1294					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCAGTGTATGGAGAAACGACA	0.433													23	70					0	0	0.002299	0	0
FAM5C	339479	broad.mit.edu	37	1	190068135	190068135	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:190068135G>A	uc001gse.1	-	8	1546	c.1314C>T	c.(1312-1314)TTC>TTT	p.F438F	FAM5C_uc010pot.1_Silent_p.F336F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	438						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGCAGGGCAGGAACGCGGTGC	0.607													10	39					0	0	0.006214	0	0
FAM5C	339479	broad.mit.edu	37	1	190129848	190129848	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:190129848G>A	uc001gse.1	-	7	1366	c.1134C>T	c.(1132-1134)AGC>AGT	p.S378S	FAM5C_uc010pot.1_Silent_p.S276S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	378						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TCTTGCTAAGGCTAAAAAGCT	0.398													37	92					0	0	0.004289	0	0
UCHL5	51377	broad.mit.edu	37	1	193018906	193018906	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:193018906G>A	uc001gsm.2	-	3	347	c.216C>T	c.(214-216)TCC>TCT	p.S72S	UCHL5_uc001gsn.2_RNA|UCHL5_uc001gso.2_Silent_p.S72S|UCHL5_uc010pov.1_RNA|UCHL5_uc001gsp.2_Silent_p.S72S|UCHL5_uc001gsq.2_Silent_p.S72S|UCHL5_uc010pow.1_5'UTR|UCHL5_uc010pox.1_Intron	NM_015984	NP_057068	Q9Y5K5	UCHL5_HUMAN	ubiquitin carboxyl-terminal hydrolase L5	72					DNA recombination|DNA repair|protein deubiquitination|regulation of proteasomal protein catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytosol|Ino80 complex|proteasome complex	endopeptidase inhibitor activity|omega peptidase activity|proteasome binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|ovary(1)	3						TGTCAAGTCGGGAGTCCTGAA	0.398													10	56					0	0	0.000673	0	0
KCNT2	343450	broad.mit.edu	37	1	196227610	196227610	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196227610G>A	uc001gtd.1	-	26	2985	c.2925C>T	c.(2923-2925)ATC>ATT	p.I975I	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.I908I|KCNT2_uc001gtf.1_Silent_p.I951I|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Silent_p.I479I	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	975	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTTCTACACTGATAGATATTT	0.363													10	57					0	0	0.000978	0	0
KCNT2	343450	broad.mit.edu	37	1	196300392	196300392	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196300392C>T	uc001gtd.1	-	18	2058	c.1998_splice	c.e18-1	p.E666_splice	KCNT2_uc009wyt.1_Splice_Site|KCNT2_uc001gte.1_Splice_Site_p.E616_splice|KCNT2_uc001gtf.1_Splice_Site_p.E666_splice|KCNT2_uc001gtg.1_Splice_Site|KCNT2_uc009wyu.2_Splice_Site_p.E666_splice|KCNT2_uc001gth.1_Splice_Site_p.E187_splice	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2							voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTAGCATACCTGTAAAATAA	0.318													52	206					0	0	0.003610	0	0
KCNT2	343450	broad.mit.edu	37	1	196309666	196309666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196309666C>T	uc001gtd.1	-	16	1648	c.1588G>A	c.(1588-1590)GAT>AAT	p.D530N	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.D480N|KCNT2_uc001gtf.1_Missense_Mutation_p.D530N|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.D530N|KCNT2_uc001gth.1_Missense_Mutation_p.D51N	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	530	Cytoplasmic (Potential).|RCK N-terminal.					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTTTATTATCCTCCCTCCTA	0.303													26	14					0	0	0.005443	0	0
KCNT2	343450	broad.mit.edu	37	1	196398838	196398838	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196398838A>G	uc001gtd.1	-	9	748	c.688T>C	c.(688-690)TTT>CTT	p.F230L	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.F230L|KCNT2_uc001gtf.1_Missense_Mutation_p.F230L|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.F230L|KCNT2_uc009wyv.1_Missense_Mutation_p.F205L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	230						voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AGGGAGTCAAAGAGATTCAGC	0.388													4	18					0	0	0.000248	0	0
CFH	3075	broad.mit.edu	37	1	196694310	196694310	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196694310C>T	uc001gtj.3	+	12	1996	c.1756C>T	c.(1756-1758)CAG>TAG	p.Q586*		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	586	Sushi 10.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CAAGAAAGACCAGTATAAAGT	0.353													29	19					0	0	0.005443	0	0
CFHR3	10878	broad.mit.edu	37	1	196762501	196762501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:196762501G>A	uc001gtl.2	+	6	938	c.851G>A	c.(850-852)GGA>GAA	p.G284E	CFHR3_uc010poy.1_Missense_Mutation_p.G223E|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	284	Sushi 5.					extracellular space					0						AAGTTAAAAGGAAGAAGTGAC	0.259													15	57					0	0	0.004007	0	0
F13B	2165	broad.mit.edu	37	1	197009744	197009744	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:197009744A>G	uc001gtt.1	-	11	1904	c.1860T>C	c.(1858-1860)ACT>ACC	p.T620T		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	620	Sushi 10.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CAGCTGGATAAGTATCTCCTC	0.323													50	24					0	0	0.003610	0	0
CRB1	23418	broad.mit.edu	37	1	197397075	197397075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:197397075C>T	uc001gtz.2	+	7	2755	c.2620C>T	c.(2620-2622)CTC>TTC	p.L874F	CRB1_uc010poz.1_Missense_Mutation_p.L805F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.L762F|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.L355F|CRB1_uc001gub.1_Missense_Mutation_p.L523F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	874	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CAATGCATCTCTCAATCCAGT	0.383													17	23					0	0	0.006122	0	0
NR5A2	2494	broad.mit.edu	37	1	200017507	200017507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:200017507C>T	uc001gvb.2	+	5	877	c.671C>T	c.(670-672)CCT>CTT	p.P224L	NR5A2_uc001gvc.2_Missense_Mutation_p.P178L|NR5A2_uc009wzh.2_Missense_Mutation_p.P184L|NR5A2_uc010pph.1_Missense_Mutation_p.P152L	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	224					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					AAAGGCCTACCTCTGAACCAT	0.512													101	57					0	0	0.003610	0	0
NR5A2	2494	broad.mit.edu	37	1	200090020	200090020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:200090020C>T	uc001gvb.2	+	7	1521	c.1315C>T	c.(1315-1317)CGT>TGT	p.R439C	NR5A2_uc001gvc.2_Missense_Mutation_p.R393C|NR5A2_uc009wzh.2_Missense_Mutation_p.R399C|NR5A2_uc010pph.1_Missense_Mutation_p.R367C	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	439					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GGCAAAACTTCGTTCTCTCCA	0.438													11	66					0	0	0.000673	0	0
FAM58B	339521	broad.mit.edu	37	1	200183228	200183228	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:200183228G>A	uc009wzi.1	+	1	573	c.537G>A	c.(535-537)CGG>CGA	p.R179R		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	179					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CCCTGCTGCGGGACAGCTACC	0.642													10	37					0	0	0.006214	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200811132	200811132	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:200811132T>C	uc001gvl.2	+	8	1241	c.971T>C	c.(970-972)TTG>TCG	p.L324S	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.L313S|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.L313S	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	324	CH.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGTAATTATTTGGTGTTCATG	0.338													27	68					0	0	0.006320	0	0
KIF21B	23046	broad.mit.edu	37	1	200978460	200978460	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:200978460G>A	uc001gvs.1	-	2	515	c.198C>T	c.(196-198)ACC>ACT	p.T66T	KIF21B_uc001gvr.1_Silent_p.T66T|KIF21B_uc009wzl.1_Silent_p.T66T|KIF21B_uc010ppn.1_Silent_p.T66T	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	66	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TGCTCACACAGGTGGAATAGA	0.582													10	42					0	0	0.006214	0	0
CACNA1S	779	broad.mit.edu	37	1	201012516	201012516	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201012516G>A	uc001gvv.2	-	40	5168	c.4941C>T	c.(4939-4941)TTC>TTT	p.F1647F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1647	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GATCTTGTGGGAAGTCCTCCA	0.552											OREG0014067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	63	21					0	0	0.003610	0	0
CACNA1S	779	broad.mit.edu	37	1	201016755	201016755	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201016755C>T	uc001gvv.2	-	37	4669	c.4442_splice	c.e37-1	p.G1481_splice		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,						axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCAAAGTTACCTGGAGCAGGA	0.498													17	64					0	0	0.004990	0	0
CACNA1S	779	broad.mit.edu	37	1	201039492	201039492	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201039492G>A	uc001gvv.2	-	17	2495	c.2268C>T	c.(2266-2268)CCC>CCT	p.P756P		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	756	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GACGTGGTCGGGGGCTCAGCG	0.582													22	96					0	0	0.002780	0	0
IGFN1	91156	broad.mit.edu	37	1	201186446	201186446	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201186446C>T	uc001gwc.2	+	6	1879	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CGCCAGCCATCCTGTCGGCCT	0.662													19	61					0	0	0.001523	0	0
LAD1	3898	broad.mit.edu	37	1	201354881	201354881	+	Missense_Mutation	SNP	C	T	T	rs143101113		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201354881C>T	uc001gwm.2	-	4	1314	c.1079G>A	c.(1078-1080)CGA>CAA	p.R360Q	LAD1_uc009wzu.1_Missense_Mutation_p.R382Q	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	360						basement membrane	structural molecule activity				0						GCTGTAGGTTCGCTGTGTGGG	0.537											OREG0014078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	108	70					0	0	0.003610	0	0
LAD1	3898	broad.mit.edu	37	1	201356245	201356245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:201356245C>T	uc001gwm.2	-	3	479	c.244G>A	c.(244-246)GAC>AAC	p.D82N	LAD1_uc009wzu.1_Missense_Mutation_p.D104N	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	82						basement membrane	structural molecule activity				0						ATGTCCTCGTCCTCATCTTTG	0.612													53	29					0	0	0.003610	0	0
SYT2	127833	broad.mit.edu	37	1	202566020	202566020	+	Silent	SNP	G	A	A	rs139376371		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:202566020G>A	uc001gye.2	-	9	1318	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F	SYT2_uc010pqb.1_Silent_p.F375F|SYT2_uc009xaf.2_Silent_p.F205F	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	375	Phospholipid binding (By similarity).|C2 2.|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	TGCTGCCCACGAAGATCTTGC	0.612													14	72					0	0	0.004007	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202911193	202911193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:202911193C>T	uc001gyq.3	-	7	1226	c.959G>A	c.(958-960)CGA>CAA	p.R320Q	ADIPOR1_uc010pqd.1_Missense_Mutation_p.R244Q|ADIPOR1_uc001gyr.3_Missense_Mutation_p.R119Q|ADIPOR1_uc001gys.3_Missense_Mutation_p.R320Q	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	320	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			CTCAGGAATTCGAGCAGCATA	0.498													26	102					0	0	0.005443	0	0
PPFIA4	8497	broad.mit.edu	37	1	203028942	203028942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203028942C>T	uc001gyz.2	+	8	1621	c.1028C>T	c.(1027-1029)GCC>GTC	p.A343V	PPFIA4_uc009xaj.2_Missense_Mutation_p.A974V|PPFIA4_uc010pqf.1_Missense_Mutation_p.A556V|PPFIA4_uc001gza.2_Missense_Mutation_p.A343V|PPFIA4_uc001gzb.1_Missense_Mutation_p.A38V	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	343					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						ATGCCCTTTGCCCAGTGGGAT	0.537													11	25					0	0	0.000673	0	0
CHIT1	1118	broad.mit.edu	37	1	203186116	203186116	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203186116C>T	uc001gzn.2	-	11	1398	c.1302G>A	c.(1300-1302)CGG>CGA	p.R434R	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_Intron|CHIT1_uc009xal.1_Silent_p.R196R|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Silent_p.R425R	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	434	Chitin-binding type-2.				chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						AGAAGCTGGACCGTTCCCGAG	0.597											OREG0014113	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	84	53					0	0	0.003610	0	0
FMOD	2331	broad.mit.edu	37	1	203316739	203316739	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203316739C>T	uc001gzr.2	-	2	796	c.660G>A	c.(658-660)AGG>AGA	p.R220R	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	220	LRR 5.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			ACCGGAGGCCCCTCATGGAAC	0.567													28	105					0	0	0.005443	0	0
FMOD	2331	broad.mit.edu	37	1	203316868	203316868	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203316868G>A	uc001gzr.2	-	2	667	c.531C>T	c.(529-531)TCC>TCT	p.S177S	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	177	LRR 4.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			GCTCTCTCAGGGATCGAGGCA	0.592													39	150					0	0	0.002222	0	0
ATP2B4	493	broad.mit.edu	37	1	203667392	203667392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203667392C>T	uc001gzw.2	+	3	1185	c.301C>T	c.(301-303)CTT>TTT	p.L101F	ATP2B4_uc001gzv.2_Missense_Mutation_p.L101F|ATP2B4_uc009xaq.2_Missense_Mutation_p.L101F	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	101	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GTGGGAAGCTCTTCAAGATGT	0.498													26	74					0	0	0.004656	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203798671	203798671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:203798671C>T	uc001hac.2	+	8	1007	c.391C>T	c.(391-393)CCT>TCT	p.P131S	ZC3H11A_uc001had.2_Missense_Mutation_p.P131S|ZC3H11A_uc001hae.2_Missense_Mutation_p.P131S|ZC3H11A_uc001haf.2_Missense_Mutation_p.P131S|ZC3H11A_uc010pqm.1_Missense_Mutation_p.P77S|ZC3H11A_uc001hag.1_Missense_Mutation_p.P131S	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	131							nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CCAGTCCAATCCTTCCCCTCA	0.483													25	113					0	0	0.003954	0	0
LRRN2	10446	broad.mit.edu	37	1	204587761	204587761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:204587761C>T	uc001hbe.1	-	3	1748	c.1360G>A	c.(1360-1362)GAG>AAG	p.E454K	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.E454K|LRRN2_uc009xbf.1_Missense_Mutation_p.E454K|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	454	Ig-like C2-type.|Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			CAGTAGATCTCGGGTTCGGGT	0.647													35	17					0	0	0.002222	0	0
LRRN2	10446	broad.mit.edu	37	1	204588311	204588311	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:204588311C>T	uc001hbe.1	-	3	1198	c.810G>A	c.(808-810)AAG>AAA	p.K270K	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.K270K|LRRN2_uc009xbf.1_Silent_p.K270K|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	270	LRR 9.|Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GGAGCGGGTTCTTGTTGAGGT	0.602													51	33					0	0	0.003610	0	0
NFASC	23114	broad.mit.edu	37	1	204923977	204923977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:204923977G>A	uc001hbj.2	+	7	761	c.433G>A	c.(433-435)GAA>AAA	p.E145K	NFASC_uc001hbh.2_Missense_Mutation_p.E145K|NFASC_uc010pqz.1_Missense_Mutation_p.E139K|NFASC_uc010pra.1_Missense_Mutation_p.E139K|NFASC_uc001hbi.2_Missense_Mutation_p.E139K|NFASC_uc009xbg.1_Missense_Mutation_p.E212K|NFASC_uc010prb.1_Missense_Mutation_p.E139K|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	145	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GTGGCCCAAGGAAAACCTAGA	0.597													36	140					0	0	0.005524	0	0
SLC45A3	85414	broad.mit.edu	37	1	205632453	205632453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:205632453G>A	uc001hda.1	-	3	805	c.466C>T	c.(466-468)CAC>TAC	p.H156Y	SLC45A3_uc010prn.1_5'Flank|SLC45A3_uc010pro.1_5'UTR|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	156					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			TGGCGACAGTGGTCCGGGTCC	0.637			T	ETV1|ETV5|ELK4|ERG	prostate 								5	44					0	0	0.001168	0	0
SLC26A9	115019	broad.mit.edu	37	1	205897137	205897137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:205897137C>T	uc001hdq.2	-	9	1108	c.994G>A	c.(994-996)GAC>AAC	p.D332N	SLC26A9_uc001hdo.2_5'UTR|SLC26A9_uc001hdp.2_Missense_Mutation_p.D332N	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	332	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCTATCATGTCCTTCCACTGT	0.617													35	17					0	0	0.004878	0	0
CTSE	1510	broad.mit.edu	37	1	206325396	206325396	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:206325396G>A	uc001hdu.2	+	5	739	c.621G>A	c.(619-621)CAG>CAA	p.Q207Q	CTSE_uc001hdv.2_Silent_p.Q207Q|CTSE_uc010prs.1_Silent_p.Q132Q	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	212					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TGATGGCTCAGAACCTGGTGG	0.483													37	18					0	0	0.006230	0	0
PIGR	5284	broad.mit.edu	37	1	207112646	207112646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:207112646G>A	uc001hez.2	-	3	390	c.206C>T	c.(205-207)TCC>TTC	p.S69F	PIGR_uc009xbz.2_Missense_Mutation_p.S69F	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	69	Ig-like V-type 1.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCCTCCGAGGAGATGAGGGT	0.587													8	40					0	0	0.000673	0	0
CR2	1380	broad.mit.edu	37	1	207643161	207643161	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:207643161G>A	uc001hfw.2	+	6	1033	c.939G>A	c.(937-939)GTG>GTA	p.V313V	CR2_uc001hfv.2_Silent_p.V313V|CR2_uc009xch.2_Silent_p.V313V|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	313	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AGGAAGGAGTGAACTTCATCC	0.483													6	38					0	0	0.003080	0	0
CR2	1380	broad.mit.edu	37	1	207644363	207644363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:207644363G>A	uc001hfw.2	+	8	1518	c.1424G>A	c.(1423-1425)GGA>GAA	p.G475E	CR2_uc001hfv.2_Missense_Mutation_p.G475E|CR2_uc009xch.2_Missense_Mutation_p.G475E|CR2_uc009xci.1_5'UTR	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	475	Sushi 8.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						GAAGCTACAGGAAGGCAACTC	0.428													54	77					0	0	0.003610	0	0
CR1	1378	broad.mit.edu	37	1	207679396	207679396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:207679396C>T	uc001hfy.2	+	2	409	c.269C>T	c.(268-270)TCA>TTA	p.S90L	CR1_uc009xcl.1_Missense_Mutation_p.S90L|CR1_uc001hfx.2_Missense_Mutation_p.S90L|CR1_uc010psg.1_Missense_Mutation_p.S90L|CR1_uc009xcj.1_Missense_Mutation_p.S90L|CR1_uc009xck.1_Missense_Mutation_p.S90L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	90	Sushi 1.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CTAAAAAACTCAGTCTGGACT	0.438													112	52					0	0	0.003610	0	0
MIR205	406988	broad.mit.edu	37	1	209605484	209605484	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:209605484C>T	hsa-mir-205|MI0000285	+			c.7C>T			LOC642587_uc009xcn.2_Intron|LOC642587_uc010psk.1_RNA																	0						AGAAAAAGATCCTCAGACAAT	0.507													6	34					0	0	0.001984	0	0
LAMB3	3914	broad.mit.edu	37	1	209788715	209788715	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:209788715G>A	uc001hhg.2	-	22	3810	c.3420C>T	c.(3418-3420)ATC>ATT	p.I1140I	LAMB3_uc009xco.2_Silent_p.I1140I|LAMB3_uc001hhh.2_Silent_p.I1140I	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	1140	Domain I.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		AGCGCAGCATGATGGCCTGGC	0.587													51	32					0	0	0.003610	0	0
IRF6	3664	broad.mit.edu	37	1	209968732	209968732	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:209968732C>T	uc001hhq.1	-	5	674	c.411G>A	c.(409-411)AAG>AAA	p.K137K	IRF6_uc010psm.1_Silent_p.K42K|IRF6_uc009xct.1_Silent_p.K137K	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	137					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		CATCATTATCCTTCTCATCCC	0.542										HNSCC(57;0.16)			59	27					0	0	0.003610	0	0
BATF3	55509	broad.mit.edu	37	1	212870361	212870361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:212870361C>T	uc001hjl.1	-	2	360	c.137G>A	c.(136-138)CGA>CAA	p.R46Q		NM_018664	NP_061134	Q9NR55	BATF3_HUMAN	basic leucine zipper transcription factor,	46	Basic motif.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0046)|all cancers(67;0.00785)|GBM - Glioblastoma multiforme(131;0.0731)|Epithelial(68;0.0781)		AGCAGCAACTCGGTTTTTTTC	0.557													41	19					0	0	0.002522	0	0
TATDN3	128387	broad.mit.edu	37	1	212988386	212988386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:212988386C>T	uc001hjo.2	+	10	807	c.713C>T	c.(712-714)TCA>TTA	p.S238L	TATDN3_uc010ptj.1_Intron|TATDN3_uc010ptk.1_Missense_Mutation_p.S245L|TATDN3_uc001hjp.2_Missense_Mutation_p.S237L|TATDN3_uc010ptl.1_Missense_Mutation_p.S217L|TATDN3_uc010ptm.1_Missense_Mutation_p.S185L	NM_001042552	NP_001036017	Q17R31	TATD3_HUMAN	TatD DNase domain containing 3 isoform 1	238						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(81;0.00699)|all cancers(67;0.0118)|GBM - Glioblastoma multiforme(131;0.0801)|Epithelial(68;0.104)		ATTTCTATTTCAGCAGAATAT	0.433													46	134					0	0	0.002522	0	0
PROX1	5629	broad.mit.edu	37	1	214170398	214170398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:214170398C>T	uc001hkh.2	+	2	792	c.520C>T	c.(520-522)CGG>TGG	p.R174W	PROX1_uc001hkg.1_Missense_Mutation_p.R174W	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	174					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GAATATAATTCGGGGTATGAG	0.498													32	67					0	0	0.003271	0	0
CENPF	1063	broad.mit.edu	37	1	214794131	214794131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:214794131C>T	uc001hkm.2	+	6	881	c.707C>T	c.(706-708)CCA>CTA	p.P236L		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	236	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CAAAGAACTCCAATTAGGAGA	0.438													82	90					0	0	0.003610	0	0
CENPF	1063	broad.mit.edu	37	1	214817969	214817969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:214817969C>T	uc001hkm.2	+	13	5230	c.5056C>T	c.(5056-5058)CCA>TCA	p.P1686S		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	1782					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGAAAGAACACCAAAGCATGA	0.383													14	61					0	0	0.004007	0	0
USH2A	7399	broad.mit.edu	37	1	215847641	215847641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:215847641G>A	uc001hku.1	-	63	13999	c.13612C>T	c.(13612-13614)CCA>TCA	p.P4538S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4538	Fibronectin type-III 31.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGCAATTTTGGAGGTTCCATC	0.498										HNSCC(13;0.011)			41	61					0	0	0.007835	0	0
EPRS	2058	broad.mit.edu	37	1	220192380	220192380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:220192380C>T	uc001hly.1	-	11	1661	c.1391G>A	c.(1390-1392)AGA>AAA	p.R464K	EPRS_uc010puf.1_Missense_Mutation_p.R215K|EPRS_uc001hlz.1_Missense_Mutation_p.R464K|EPRS_uc009xdt.1_Missense_Mutation_p.R187K	NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	464	Glutamyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TGTCATCCCTCTTCTCAGTAC	0.393													19	76					0	0	0.002299	0	0
MARK1	4139	broad.mit.edu	37	1	220826519	220826519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:220826519C>T	uc001hmn.3	+	16	2410	c.1813C>T	c.(1813-1815)CCC>TCC	p.P605S	MARK1_uc009xdw.2_Missense_Mutation_p.P606S|MARK1_uc010pun.1_Missense_Mutation_p.P605S|MARK1_uc001hmm.3_Missense_Mutation_p.P583S	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	605					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		GACCCGTTTTCCCCGAGGGAG	0.537													19	80					0	0	0.007413	0	0
MOSC2	54996	broad.mit.edu	37	1	220936284	220936284	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:220936284C>A	uc001hmq.2	+	4	840	c.642C>A	c.(640-642)ATC>ATA	p.I214I	MOSC2_uc001hmr.2_Silent_p.I214I|MOSC2_uc009xdx.2_Silent_p.I214I	NM_017898	NP_060368	Q969Z3	MOSC2_HUMAN	MOCO sulphurase C-terminal domain containing 2	214	MOSC.					mitochondrial outer membrane|peroxisome	molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.00499)|all cancers(67;0.204)		CGCTCCTGATCATGACAGATG	0.488													15	49					5.01169e-05	7.23299e-05	0.004990	1	0
HLX	3142	broad.mit.edu	37	1	221054565	221054566	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:221054565_221054566CC>TT	uc001hmv.3	+	2	1079_1080	c.622_623CC>TT	c.(622-624)CCC>TTC	p.P208F		NM_021958	NP_068777	Q14774	HLX_HUMAN	H2.0-like homeobox	208					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				GBM - Glioblastoma multiforme(131;0.00914)		CGGTGGGCGGCCCGCCGGGGTG	0.584													58	52					0	0	0.004672	0	0
HHIPL2	79802	broad.mit.edu	37	1	222705434	222705434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:222705434C>T	uc001hnh.1	-	6	1655	c.1597G>A	c.(1597-1599)GAA>AAA	p.E533K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	533					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TTTCTATCTTCCTGCAAAGCC	0.433													401	219					0	0	0.003610	0	0
HHIPL2	79802	broad.mit.edu	37	1	222717322	222717322	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:222717322C>T	uc001hnh.1	-	2	589	c.531G>A	c.(529-531)AAG>AAA	p.K177K		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	177					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		AGCAATAGTCCTTGTCAGGAA	0.597													333	150					0	0	0.003610	0	0
DISP1	84976	broad.mit.edu	37	1	223176032	223176032	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:223176032G>T	uc001hnu.1	+	8	1440	c.1293G>T	c.(1291-1293)TTG>TTT	p.L431F		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	431					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		TCCATTACTTGGTGGACAAAG	0.498													12	674					0.000978159	0.00140748	0.000978	1	0
SUSD4	55061	broad.mit.edu	37	1	223465992	223465992	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:223465992C>T	uc001hnx.2	-	2	784	c.150G>A	c.(148-150)GGG>GGA	p.G50G	SUSD4_uc001hny.3_Silent_p.G50G|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.G50G|SUSD4_uc010pux.1_Intron	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	50	Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		GGTCATCGAACCCTACATCAA	0.512													5	35					0	0	0.000602	0	0
ZNF678	339500	broad.mit.edu	37	1	227843247	227843247	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:227843247C>T	uc001hqw.1	+	4	1641	c.1296C>T	c.(1294-1296)CCC>CCT	p.P432P	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	487					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				GAGAGAAACCCTACAAATGTA	0.363													32	13					0	0	0.002096	0	0
JMJD4	65094	broad.mit.edu	37	1	227923013	227923013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:227923013C>T	uc001hrb.2	-	1	100	c.100G>A	c.(100-102)GAA>AAA	p.E34K	SNAP47_uc001hqz.2_Intron|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_5'UTR|SNAP47_uc001hre.2_5'UTR|SNAP47_uc001hrf.2_5'UTR|JMJD4_uc001hrc.2_Missense_Mutation_p.E34K	NM_023007	NP_075383	Q9H9V9	JMJD4_HUMAN	jumonji domain containing 4 isoform 1	34											0		Prostate(94;0.0885)				CTCCTCACTTCCGCCGGAGCG	0.711													13	7					0	0	0.001855	0	0
SNAP47	116841	broad.mit.edu	37	1	227968364	227968364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:227968364G>A	uc001hrf.2	+	5	1799	c.1385G>A	c.(1384-1386)AGG>AAG	p.R462K	SNAP47_uc001hra.2_Missense_Mutation_p.R220K	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	462	t-SNARE coiled-coil homology 2.					endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						CGGATGAAGAGGCTGACCTAG	0.617													13	47					0	0	0.002450	0	0
OBSCN	84033	broad.mit.edu	37	1	228505743	228505743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:228505743G>A	uc009xez.1	+	53	14044	c.14000G>A	c.(13999-14001)GGG>GAG	p.G4667E	OBSCN_uc001hsn.2_Missense_Mutation_p.G4667E	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4667	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CAGCCCGGTGGGCGGTTCGAG	0.627													45	45					0	0	0.003610	0	0
OBSCN	84033	broad.mit.edu	37	1	228556502	228556502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:228556502C>T	uc009xez.1	+	89	19891	c.19847C>T	c.(19846-19848)CCA>CTA	p.P6616L	OBSCN_uc001hsr.1_Missense_Mutation_p.P1245L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6616	Protein kinase 1.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AACATCACCCCAGCAGAGCTG	0.562													38	170					0	0	0.005524	0	0
HIST3H3	8290	broad.mit.edu	37	1	228612796	228612796	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:228612796C>T	uc001hsx.1	-	1	231	c.231G>A	c.(229-231)CAG>CAA	p.Q77Q		NM_003493	NP_003484	Q16695	H31T_HUMAN	histone cluster 3, H3	77					nucleosome assembly|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		Prostate(94;0.0724)				TCTTAAAGTCCTGAGCGATCT	0.627													37	96					0	0	0.004878	0	0
RHOU	58480	broad.mit.edu	37	1	228879481	228879481	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:228879481C>T	uc001htf.2	+	3	1392	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_021205	NP_067028	Q7L0Q8	RHOU_HUMAN	ras homolog gene family, member U	257					regulation of small GTPase mediated signal transduction	cell projection|cytosol|focal adhesion|Golgi membrane|podosome	GTP binding|metal ion binding|protein binding				0	Breast(184;0.162)	Prostate(94;0.183)				ACTGCTGTTTCGTATGATGCT	0.408													14	56					0	0	0.002450	0	0
TAF5L	27097	broad.mit.edu	37	1	229750146	229750146	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:229750146G>A	uc001htq.2	-	2	250	c.84C>T	c.(82-84)CCC>CCT	p.P28P	TAF5L_uc001htr.2_Silent_p.P28P	NM_014409	NP_055224	O75529	TAF5L_HUMAN	PCAF associated factor 65 beta isoform a	28					histone H3 acetylation|transcription from RNA polymerase II promoter	STAGA complex|transcription factor TFTC complex	sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	Breast(184;0.193)|Ovarian(103;0.249)	Prostate(94;0.167)				CTTGCTTCAGGGGACCATCTG	0.582													14	57					0	0	0.003163	0	0
COG2	22796	broad.mit.edu	37	1	230810853	230810853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:230810853C>T	uc001htw.2	+	9	1160	c.1009C>T	c.(1009-1011)CCC>TCC	p.P337S	COG2_uc001htx.2_Missense_Mutation_p.P337S|COG2_uc010pwc.1_Missense_Mutation_p.P210S	NM_007357	NP_031383	Q14746	COG2_HUMAN	component of oligomeric golgi complex 2 isoform	337					Golgi organization|intra-Golgi vesicle-mediated transport|intracellular protein transport|oligosaccharide biosynthetic process|protein glycosylation	Golgi membrane|Golgi stack|Golgi transport complex	protein binding|protein transporter activity				0	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.178)				TCCTGGGAATCCCGATGCATT	0.413													29	79					0	0	0.007291	0	0
DISC1	27185	broad.mit.edu	37	1	232162271	232162271	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:232162271A>C	uc001huz.2	+	12	2451	c.2398A>C	c.(2398-2400)ATC>CTC	p.I800L	TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pxh.1_Missense_Mutation_p.I832L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_Missense_Mutation_p.I423L|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Missense_Mutation_p.I678L|DISC1_uc010pxn.1_Missense_Mutation_p.I445L|DISC1_uc001hva.2_Missense_Mutation_p.I778L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	800	Necessary and sufficient for interaction with PCNT and localization at the centrosome.|Interaction with ATF4 and ATF5.|Interaction with PAFAH1B1.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				TCACACAGCAATCCACAGTCA	0.378													17	6					0	0	0.007413	0	0
KIAA1383	54627	broad.mit.edu	37	1	232943896	232943896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:232943896C>T	uc001hvh.2	+	1	3259	c.3127C>T	c.(3127-3129)CCA>TCA	p.P1043S		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	901										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				AAATAAACTTCCAGGATACAC	0.289													21	9					0	0	0.001882	0	0
PCNXL2	80003	broad.mit.edu	37	1	233161005	233161005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:233161005C>T	uc001hvl.2	-	26	4727	c.4492G>A	c.(4492-4494)GAA>AAA	p.E1498K	PCNXL2_uc001hvk.1_Missense_Mutation_p.E150K|PCNXL2_uc001hvm.1_Intron	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1498						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TGCGTGATTTCCCAGGTGAGC	0.612											OREG0014326	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	132					0	0	0.002096	0	0
PCNXL2	80003	broad.mit.edu	37	1	233270786	233270786	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:233270786G>A	uc001hvl.2	-	21	4045	c.3810C>T	c.(3808-3810)TTC>TTT	p.F1270F	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1270	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ACACCATGAAGAAATCCAGTA	0.338													45	39					0	0	0.003610	0	0
KIAA1804	84451	broad.mit.edu	37	1	233507873	233507873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:233507873C>T	uc001hvt.3	+	6	1903	c.1642C>T	c.(1642-1644)CCC>TCC	p.P548S	KIAA1804_uc001hvs.1_Missense_Mutation_p.P548S	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	548					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CCCGAGCAGCCCCACAATGAT	0.567													15	71					0	0	0.002450	0	0
TBCE	6905	broad.mit.edu	37	1	235594039	235594039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:235594039C>T	uc001hwz.1	+	7	703	c.580C>T	c.(580-582)CCC>TCC	p.P194S	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Missense_Mutation_p.P194S|TBCE_uc010pxr.1_Missense_Mutation_p.P194S|TBCE_uc001hxb.1_Missense_Mutation_p.P81S	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	194	LRR 2.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			ACTAAAATTTCCCTCCGGTTC	0.338													16	19					0	0	0.004007	0	0
TBCE	6905	broad.mit.edu	37	1	235600750	235600750	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:235600750C>T	uc001hwz.1	+	12	1200	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.I359I|TBCE_uc010pxr.1_Silent_p.I410I|TBCE_uc001hxb.1_Silent_p.I246I	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	359	LRRCT.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			TACTCATTATCGCCAGCATTG	0.438													10	44					0	0	0.001855	0	0
LYST	1130	broad.mit.edu	37	1	235866166	235866167	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:235866166_235866167GG>AA	uc001hxj.2	-	45	10429_10430	c.10254_10255CC>TT	c.(10252-10257)GCCCAT>GCTTAT	p.H3419Y	LYST_uc001hxi.2_Missense_Mutation_p.H643Y	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3419	BEACH.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CTGCTCACATGGGCCATGTGGA	0.525									Chediak-Higashi_syndrome				66	221					0	0	0.004672	0	0
LYST	1130	broad.mit.edu	37	1	235973358	235973358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:235973358G>A	uc001hxj.2	-	5	935	c.760C>T	c.(760-762)CCA>TCA	p.P254S	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.P254S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	254					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			AAGTCAAATGGAGAATTGTTC	0.363									Chediak-Higashi_syndrome				27	69					0	0	0.005443	0	0
LGALS8	3964	broad.mit.edu	37	1	236700859	236700859	+	Silent	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:236700859T>A	uc001hxz.1	+	4	489	c.108T>A	c.(106-108)CGT>CGA	p.R36R	LGALS8_uc001hxw.1_Silent_p.R36R|LGALS8_uc001hxy.1_Silent_p.R36R|LGALS8_uc009xgg.1_RNA|LGALS8_uc001hya.1_Silent_p.R36R|LGALS8_uc001hyb.1_Silent_p.R36R|LGALS8_uc001hyc.1_Silent_p.R36R	NM_201543	NP_963837	O00214	LEG8_HUMAN	galectin-8 isoform b	36	Galectin 1.					cytoplasm|extracellular space	sugar binding			ovary(1)	1	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.0253)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			TTGTGATACGTGGGCATGTTC	0.393													12	55					0	0	0.002450	0	0
ACTN2	88	broad.mit.edu	37	1	236881274	236881274	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:236881274T>C	uc001hyf.2	+	2	445	c.241_splice	c.e2+2	p.G81_splice	ACTN2_uc001hyg.2_Splice_Site|ACTN2_uc009xgi.1_Splice_Site_p.G81_splice	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2						focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TCATCTCAGGTTGGTGTTATA	0.448													21	11					0	0	0.001216	0	0
ACTN2	88	broad.mit.edu	37	1	236925806	236925806	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:236925806C>T	uc001hyf.2	+	21	2776	c.2572C>T	c.(2572-2574)CAG>TAG	p.Q858*	ACTN2_uc001hyg.2_Nonsense_Mutation_p.Q650*|ACTN2_uc009xgi.1_Nonsense_Mutation_p.Q858*|ACTN2_uc010pxu.1_Nonsense_Mutation_p.Q547*|ACTN2_uc001hyh.2_Nonsense_Mutation_p.Q546*	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	858					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GCCCCCGGATCAGGCCCAGTA	0.577													23	20					0	0	0.003954	0	0
MTR	4548	broad.mit.edu	37	1	237054611	237054611	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:237054611C>T	uc001hyi.3	+	29	3609	c.3186C>T	c.(3184-3186)TTC>TTT	p.F1062F	MTR_uc010pxw.1_Silent_p.F655F|MTR_uc010pxx.1_Silent_p.F1011F|MTR_uc010pxy.1_Silent_p.F916F	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	1062	AdoMet activation.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	TAGCCACCTTCTATGGGTTAA	0.527													59	30					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237796890	237796890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:237796890C>T	uc001hyl.1	+	43	6688	c.6568C>T	c.(6568-6570)CCC>TCC	p.P2190S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2190	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AATCACCTTTCCCAAGATGGT	0.388													67	217					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237995900	237995900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:237995900C>T	uc001hyl.1	+	105	14977	c.14857C>T	c.(14857-14859)CCA>TCA	p.P4953S	RYR2_uc010pyb.1_3'UTR	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4953					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGAATTTTTCCCAGCAGGGGA	0.418													16	42					0	0	0.006122	0	0
ZP4	57829	broad.mit.edu	37	1	238049117	238049117	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:238049117G>A	uc001hym.2	-	7	909	c.909C>T	c.(907-909)CTC>CTT	p.L303L	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	303	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			AGGGTGGTGGGAGAGTGAAAA	0.502													15	64					0	0	0.004007	0	0
CHRM3	1131	broad.mit.edu	37	1	240071103	240071103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:240071103G>A	uc001hyp.2	+	5	1131	c.352G>A	c.(352-354)GGG>AGG	p.G118R		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	118	Helical; Name=2; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TCTGATTATCGGGGTCATTTC	0.478													15	58					0	0	0.004007	0	0
FMN2	56776	broad.mit.edu	37	1	240286552	240286552	+	Silent	SNP	C	T	T	rs141488751		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:240286552C>T	uc010pyd.1	+	2	1914	c.1689C>T	c.(1687-1689)TCC>TCT	p.S563S	FMN2_uc010pye.1_Silent_p.S563S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	563					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGTTTTGCTCCCGGATCATTG	0.493													44	40					0	0	0.002222	0	0
FMN2	56776	broad.mit.edu	37	1	240371380	240371380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:240371380C>T	uc010pyd.1	+	5	3493	c.3268C>T	c.(3268-3270)CCT>TCT	p.P1090S	FMN2_uc010pye.1_Missense_Mutation_p.P1094S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1090	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCACCTCCCCCTCTACCCGG	0.731													8	15					0	0	0.000978	0	0
RGS7	6000	broad.mit.edu	37	1	240975259	240975259	+	Silent	SNP	G	A	A	rs114051974	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:240975259G>A	uc001hyv.2	-	14	1371	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F	RGS7_uc010pyh.1_Silent_p.F321F|RGS7_uc010pyj.1_Silent_p.F263F|RGS7_uc001hyu.2_Silent_p.F347F|RGS7_uc009xgn.1_Silent_p.F294F|RGS7_uc001hyw.2_Silent_p.F347F|RGS7_uc001hyt.2_Silent_p.F179F	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	347	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			GAAATTTAAGGAACTGTTCTC	0.418													23	72					0	0	0.002299	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358													27	14					0	0	0.007291	0	0
PLD5	200150	broad.mit.edu	37	1	242383300	242383300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:242383300G>A	uc001hzn.1	-	5	852	c.725C>T	c.(724-726)TCC>TTC	p.S242F	PLD5_uc001hzl.3_Missense_Mutation_p.S180F|PLD5_uc001hzm.3_Missense_Mutation_p.S32F|PLD5_uc001hzo.1_Missense_Mutation_p.S150F			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	242	PLD phosphodiesterase 1.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			CTGTCCCAGGGATTGCCAGTC	0.498													18	27					0	0	0.006122	0	0
CEP170	9859	broad.mit.edu	37	1	243333023	243333023	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:243333023C>A	uc001hzs.2	-	12	2158	c.1750G>T	c.(1750-1752)GTT>TTT	p.V584F	CEP170_uc001hzt.2_Missense_Mutation_p.V486F|CEP170_uc001hzu.2_Missense_Mutation_p.V486F	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	584						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			CACTGTGAAACCCAACGTTTG	0.398													14	31					1.49906e-05	2.1651e-05	0.002450	1	0
ZNF669	79862	broad.mit.edu	37	1	247263852	247263852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247263852G>A	uc001ice.2	-	4	1392	c.1219C>T	c.(1219-1221)CTC>TTC	p.L407F	ZNF669_uc001icf.2_Missense_Mutation_p.L321F	NM_024804	NP_079080	Q96BR6	ZN669_HUMAN	zinc finger protein 669 isoform 1	407	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;4.09e-05)|all_epithelial(71;6.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0283)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00427)			CTTTCGTGGAGGTGAAGGGAA	0.428													86	40					0	0	0.003610	0	0
NLRP3	114548	broad.mit.edu	37	1	247587382	247587382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247587382G>A	uc001icr.2	+	5	775	c.637G>A	c.(637-639)GAT>AAT	p.D213N	NLRP3_uc001ics.2_Missense_Mutation_p.D213N|NLRP3_uc001icu.2_Missense_Mutation_p.D213N|NLRP3_uc001icw.2_Missense_Mutation_p.D213N|NLRP3_uc001icv.2_Missense_Mutation_p.D213N|NLRP3_uc010pyw.1_Missense_Mutation_p.D211N|NLRP3_uc001ict.1_Missense_Mutation_p.D211N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	213					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TGACCCCGATGATGAGCATTC	0.587													16	40					0	0	0.004007	0	0
C1orf150	148823	broad.mit.edu	37	1	247737445	247737445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247737445G>A	uc001idf.2	+	5	214	c.169G>A	c.(169-171)GAA>AAA	p.E57K	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	57											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGCTTGGCAGGAAAACGAGAA	0.438													34	95					0	0	0.005524	0	0
C1orf150	148823	broad.mit.edu	37	1	247737590	247737590	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247737590G>A	uc001idf.2	+	5	359	c.314G>A	c.(313-315)AGG>AAG	p.R105K	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	105											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TTTAGAGAAAGGTCAGAGACA	0.438													12	35					0	0	0.000978	0	0
OR2G2	81470	broad.mit.edu	37	1	247752288	247752288	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247752288C>T	uc010pyy.1	+	1	627	c.627C>T	c.(625-627)TTC>TTT	p.F209F		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GTATCCTTTTCCTTATAGTGC	0.498													44	33					0	0	0.003610	0	0
OR2G3	81469	broad.mit.edu	37	1	247769401	247769401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247769401C>T	uc010pyz.1	+	1	514	c.514C>T	c.(514-516)CAT>TAT	p.H172Y		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	172	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGTGGCAACCATAGGCTGGA	0.463													16	65					0	0	0.006122	0	0
OR13G1	441933	broad.mit.edu	37	1	247835746	247835746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247835746C>T	uc001idi.1	-	1	598	c.598G>A	c.(598-600)GAT>AAT	p.D200N		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGGGTAATATCAGCAACATAC	0.458													19	72					0	0	0.001882	0	0
OR6F1	343169	broad.mit.edu	37	1	247875172	247875172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247875172C>T	uc001idj.1	-	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TCTCTTACTTCCTTATTACGA	0.428													25	98					0	0	0.001786	0	0
OR6F1	343169	broad.mit.edu	37	1	247875959	247875959	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247875959C>T	uc001idj.1	-	1	99	c.99G>A	c.(97-99)GTG>GTA	p.V33V		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGATGTACATCACCAGAAAAA	0.463													73	94					0	0	0.003610	0	0
OR1C1	26188	broad.mit.edu	37	1	247921397	247921397	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247921397G>A	uc010pza.1	-	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAAAAGAAACGAAGAAGAAGA	0.473													19	19					0	0	0.007413	0	0
OR14A16	284532	broad.mit.edu	37	1	247978180	247978180	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247978180G>A	uc001idm.1	-	1	852	c.852C>T	c.(850-852)CCC>CCT	p.P284P		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTATATAATGGGATTAAAGG	0.408													8	27					0	0	0.006214	0	0
OR14A16	284532	broad.mit.edu	37	1	247978955	247978955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:247978955G>A	uc001idm.1	-	1	77	c.77C>T	c.(76-78)TCG>TTG	p.S26L		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAAGAGAATCGAATGCAAAAT	0.393													10	34					0	0	0.000673	0	0
OR11L1	391189	broad.mit.edu	37	1	248005013	248005013	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248005013G>A	uc001idn.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GATGCTGGAGGAACATGTACA	0.547													8	23					0	0	0.003080	0	0
TRIM58	25893	broad.mit.edu	37	1	248039313	248039313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248039313G>A	uc001ido.2	+	6	1031	c.983G>A	c.(982-984)CGA>CAA	p.R328Q	OR2W3_uc001idp.1_5'UTR	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	328	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AACCCTGAGCGATTTGACACA	0.602													33	23					0	0	0.002445	0	0
OR2L8	391190	broad.mit.edu	37	1	248112235	248112235	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248112235T>C	uc001idt.1	+	1	76	c.76T>C	c.(76-78)TTC>CTC	p.F26L	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGACCTTTTCTTCTTCATTCT	0.393													121	76					0	0	0.003610	0	0
OR2AK2	391191	broad.mit.edu	37	1	248129222	248129222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248129222C>T	uc010pzd.1	+	1	589	c.589C>T	c.(589-591)CCA>TCA	p.P197S	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CTGTGAAGTTCCAGCTCTACT	0.428													13	56					0	0	0.003163	0	0
OR2L1P	26247	broad.mit.edu	37	1	248153930	248153930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248153930C>T	uc001idv.1	+	1	362	c.118C>T	c.(118-120)CGT>TGT	p.R40C	OR2L13_uc001ids.2_Intron	NR_002145				RecName: Full=Olfactory receptor 2L5; AltName: Full=Olfactory receptor OR1-53;												0						GGCCTATGATCGTTATGTGGC	0.453													47	57					0	0	0.003214	0	0
OR2L2	26246	broad.mit.edu	37	1	248201930	248201930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248201930C>T	uc001idw.2	+	1	457	c.361C>T	c.(361-363)CGT>TGT	p.R121C	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GGCCTATGATCGTTATGTGGC	0.353													29	93					0	0	0.001786	0	0
OR2M3	127062	broad.mit.edu	37	1	248366471	248366472	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248366471_248366472CT>TA	uc010pzg.1	+	1	102_103	c.102_103CT>TA	c.(100-105)ATCTTT>ATTATT	p.F35I		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCCTGGCCATCTTTTCAGTGGC	0.54													61	239					0	0	0.004672	0	0
OR2M4	26245	broad.mit.edu	37	1	248402688	248402688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248402688C>T	uc010pzh.1	+	1	458	c.458C>T	c.(457-459)TCT>TTT	p.S153F		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ACCTTGGGGTCTCTTGATGGG	0.458													90	44					0	0	0.003610	0	0
OR2M4	26245	broad.mit.edu	37	1	248402698	248402698	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248402698G>A	uc010pzh.1	+	1	468	c.468G>A	c.(466-468)GGG>GGA	p.G156G		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTCTTGATGGGATCATAGTGC	0.458													32	105					0	0	0.002445	0	0
OR2M7	391196	broad.mit.edu	37	1	248487180	248487180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248487180C>T	uc010pzk.1	-	1	691	c.691G>A	c.(691-693)GGA>AGA	p.G231R		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CGTCCCTCTCCAGATCCCATG	0.448													60	241					0	0	0.003610	0	0
OR2T6	254879	broad.mit.edu	37	1	248551537	248551537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248551537C>T	uc001iei.1	+	1	628	c.628C>T	c.(628-630)CCC>TCC	p.P210S		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTGCTGATCCCCTTCTCGGT	0.532													19	53					0	0	0.001523	0	0
OR2T1	26696	broad.mit.edu	37	1	248569430	248569430	+	Silent	SNP	C	T	T	rs145103744		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248569430C>T	uc010pzm.1	+	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	45	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TACCTTATATCGGCACAACTG	0.378													26	123					0	0	0.003954	0	0
OR2T2	401992	broad.mit.edu	37	1	248616175	248616175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248616175G>A	uc001iek.1	+	1	77	c.77G>A	c.(76-78)GGG>GAG	p.G26E		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCCTTCCCCGGGCTTCTCTTT	0.542													31	278					0	0	0.004878	0	0
OR2G6	391211	broad.mit.edu	37	1	248685694	248685694	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248685694C>T	uc001ien.1	+	1	747	c.747C>T	c.(745-747)ATC>ATT	p.I249I		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTGTGGTCATCATTTTCTATG	0.453													20	86					0	0	0.001216	0	0
OR2G6	391211	broad.mit.edu	37	1	248685814	248685814	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248685814C>T	uc001ien.1	+	1	867	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACCCCATTATCTACACTCTGA	0.443													42	29					0	0	0.002222	0	0
OR2T34	127068	broad.mit.edu	37	1	248737510	248737510	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248737510G>A	uc001iep.1	-	1	549	c.549C>T	c.(547-549)TTC>TTT	p.F183F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGTCTCACAGAAAAAACTCA	0.512													27	89					0	0	0.003271	0	0
OR2T34	127068	broad.mit.edu	37	1	248737528	248737528	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr1:248737528C>T	uc001iep.1	-	1	531	c.531G>A	c.(529-531)AGG>AGA	p.R177R		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCAGGATTTTCCTAGACTGGC	0.527													52	32					0	0	0.003610	0	0
DIP2C	22982	broad.mit.edu	37	10	436680	436680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:436680C>T	uc001ifp.2	-	11	1474	c.1384G>A	c.(1384-1386)GGT>AGT	p.G462S	DIP2C_uc009xhj.1_Missense_Mutation_p.G158S	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	462						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		GGTGGCTTACCTTTAAACTGT	0.537													32	14					0	0	0.006230	0	0
DIP2C	22982	broad.mit.edu	37	10	465054	465055	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:465054_465055GG>AA	uc001ifp.2	-	6	779_780	c.689_690CC>TT	c.(688-690)TCC>TTT	p.S230F		NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	230						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		GCGCTGTCCGGGACCCCGTGGA	0.54													14	13					0	0	0.004672	0	0
IDI2	91734	broad.mit.edu	37	10	1066776	1066776	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:1066776C>T	uc001ifv.1	-	4	362	c.297G>A	c.(295-297)AAG>AAA	p.K99K	C10orf110_uc010qaf.1_5'Flank|C10orf110_uc001ifx.3_5'Flank|C10orf110_uc001ifw.3_5'Flank|C10orf110_uc001ify.3_5'Flank	NM_033261	NP_150286	Q9BXS1	IDI2_HUMAN	isopentenyl-diphosphate delta isomerase 2	99	Nudix hydrolase.				carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding				0		Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.143)	Epithelial(11;0.067)|OV - Ovarian serous cystadenocarcinoma(14;0.169)|all cancers(11;0.192)		CGATGGCATCCTTTTCTTCCA	0.522													12	6					0	0	0.000978	0	0
KLF6	1316	broad.mit.edu	37	10	3823999	3823999	+	Silent	SNP	G	A	A	rs1062673		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:3823999G>A	uc001iha.2	-	2	777	c.510C>T	c.(508-510)CCC>CCT	p.P170P	KLF6_uc010qaj.1_Silent_p.P170P|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Silent_p.P170P|KLF6_uc001ihb.2_Silent_p.P170P	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	170					B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		TCCCTGGCGAGGGCAGCTCCC	0.647											OREG0019980	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	7					0	0	0.002299	0	0
AKR1E2	83592	broad.mit.edu	37	10	4881973	4881973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:4881973C>T	uc001ihi.2	+	6	750	c.635C>T	c.(634-636)TCC>TTC	p.S212F	AKR1E2_uc001ihl.1_Intron|AKR1E2_uc010qam.1_Intron|AKR1E2_uc001ihh.1_Intron|AKR1E2_uc009xhw.2_Intron|AKR1E2_uc001ihj.2_RNA|AKR1E2_uc001ihk.2_Intron	NM_001040177	NP_001035267	Q96JD6	AKCL2_HUMAN	aldo-keto reductase family 1, member E2	212						cytoplasm	1,5-anhydro-D-fructose reductase activity				0						TTTTGCCAATCCAGAGATGTG	0.448													26	15					0	0	0.002096	0	0
USP6NL	9712	broad.mit.edu	37	10	11505008	11505009	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:11505008_11505009CC>TT	uc001ikt.3	-	15	2239_2240	c.1918_1919GG>AA	c.(1918-1920)GGA>AAA	p.G640K	USP6NL_uc001iks.1_Missense_Mutation_p.G657K	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	640						intracellular	Rab GTPase activator activity				0						GGGAGAGTTTCCGTGGTAAACG	0.55													5	1					0	0	0.004672	0	0
ACBD7	414149	broad.mit.edu	37	10	15121003	15121003	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:15121003G>A	uc001inv.2	-	2	97	c.49C>T	c.(49-51)CTG>TTG	p.L17L	ACBD7_uc010qby.1_5'UTR	NM_001039844	NP_001034933	Q8N6N7	ACBD7_HUMAN	acyl-Coenzyme A binding domain containing 7	17	ACB.						fatty-acyl-CoA binding				0						CTTGCTTTCAGCTTCCTCACA	0.363													25	45					0	0	0.006320	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255975	15255975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:15255975C>T	uc001iob.2	-	8	1619	c.1612G>A	c.(1612-1614)GAA>AAA	p.E538K		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	538	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						ATCATACATTCAGTGGGTCTG	0.552													40	54					0	0	0.003610	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256024	15256024	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:15256024G>A	uc001iob.2	-	8	1570	c.1563C>T	c.(1561-1563)CCC>CCT	p.P521P		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	521	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						ATGAAGGCGCGGGGTACAGAT	0.522													30	70					0	0	0.002445	0	0
PLXDC2	84898	broad.mit.edu	37	10	20335829	20335829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:20335829G>A	uc001iqg.1	+	3	993	c.356G>A	c.(355-357)CGA>CAA	p.R119Q	PLXDC2_uc001iqh.1_Intron	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	119	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						TATATATCTCGAATATATGGT	0.333													34	21					0	0	0.006230	0	0
NEBL	10529	broad.mit.edu	37	10	21108411	21108411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:21108411G>A	uc001iqi.2	-	20	2394	c.1997C>T	c.(1996-1998)CCG>CTG	p.P666L	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	666	Nebulin 18.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CATGCTTACCGGAGTGGCCTT	0.443													42	66					0	0	0.003610	0	0
C10orf113	387638	broad.mit.edu	37	10	21435389	21435389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:21435389C>T	uc001iqm.2	-	1	39	c.19G>A	c.(19-21)GAA>AAA	p.E7K	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	17										ovary(3)|pancreas(1)	4						TCAGAAATTTCAGGTGCCATG	0.383													15	28					0	0	0.004990	0	0
KIAA1217	56243	broad.mit.edu	37	10	24721977	24721977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:24721977G>A	uc001iru.3	+	4	1010	c.607G>A	c.(607-609)GAA>AAA	p.E203K	KIAA1217_uc001irs.2_Missense_Mutation_p.E123K|KIAA1217_uc001irt.3_Missense_Mutation_p.E203K|KIAA1217_uc010qcy.1_Missense_Mutation_p.E203K|KIAA1217_uc010qcz.1_Missense_Mutation_p.E203K|KIAA1217_uc001irv.1_Missense_Mutation_p.E53K|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	203					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GATGCCGAATGAAATCACAAG	0.483													9	14					0	0	0.001855	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24908410	24908410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:24908410G>A	uc001isb.2	-	9	2901	c.2414C>T	c.(2413-2415)CCA>CTA	p.P805L	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Missense_Mutation_p.P805L|ARHGAP21_uc010qdc.1_Missense_Mutation_p.P640L|ARHGAP21_uc001isc.1_Missense_Mutation_p.P795L	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	804					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						ACCTATAAATGGGATGGAAGC	0.418													25	38					0	0	0.005443	0	0
MYO3A	53904	broad.mit.edu	37	10	26377302	26377302	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:26377302C>T	uc001isn.2	+	15	1890	c.1530C>T	c.(1528-1530)CTC>CTT	p.L510L	MYO3A_uc009xko.1_Silent_p.L510L|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Silent_p.L510L	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	510	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CTGAATATCTCCTGGAAAAAT	0.348													7	29					0	0	0.004482	0	0
MYO3A	53904	broad.mit.edu	37	10	26455032	26455032	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:26455032C>T	uc001isn.2	+	27	3396	c.3036C>T	c.(3034-3036)CCC>CCT	p.P1012P	MYO3A_uc009xko.1_Silent_p.P1012P|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1012	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCGAGGAGCCCCGCATGAGCC	0.458													46	113					0	0	0.003610	0	0
MYO3A	53904	broad.mit.edu	37	10	26490203	26490203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:26490203C>T	uc001isn.2	+	33	4915	c.4555C>T	c.(4555-4557)CAA>TAA	p.Q1519*	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1519					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GAAGTCAATCCAAGAAGAAAA	0.244													4	7					0	0	0.000248	0	0
GAD2	2572	broad.mit.edu	37	10	26513537	26513537	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:26513537C>T	uc001isp.2	+	6	1184	c.681C>T	c.(679-681)ATC>ATT	p.I227I	GAD2_uc001isq.2_Silent_p.I227I	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	227					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TGAGAGAAATCATTGGCTGGC	0.393													17	37					0	0	0.004007	0	0
ANKRD26	22852	broad.mit.edu	37	10	27306649	27306649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:27306649G>A	uc001ith.2	-	30	4457	c.4285C>T	c.(4285-4287)CTT>TTT	p.L1429F	ANKRD26_uc001itg.2_Missense_Mutation_p.L1116F|ANKRD26_uc009xku.1_Missense_Mutation_p.L1430F	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1429	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TCCTCTTGAAGAATTTGGTTC	0.333													12	23					0	0	0.001368	0	0
ARMC4	55130	broad.mit.edu	37	10	28260179	28260179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:28260179C>T	uc009xky.2	-	8	1098	c.1000G>A	c.(1000-1002)GAA>AAA	p.E334K	ARMC4_uc010qds.1_Intron|ARMC4_uc010qdt.1_Missense_Mutation_p.E26K|ARMC4_uc001itz.2_Missense_Mutation_p.E334K|ARMC4_uc010qdu.1_Missense_Mutation_p.E26K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	334							binding			ovary(4)|skin(2)	6						GCTGCTTCTTCCTTCTTGGGG	0.388													11	26					0	0	0.000978	0	0
ARMC4	55130	broad.mit.edu	37	10	28284023	28284023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:28284023C>T	uc009xky.2	-	2	147	c.49G>A	c.(49-51)GGA>AGA	p.G17R	ARMC4_uc001itz.2_Missense_Mutation_p.G17R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	17							binding			ovary(4)|skin(2)	6						ATTCCAGTTCCATGTCCGGCA	0.468													6	17					0	0	0.001984	0	0
MPP7	143098	broad.mit.edu	37	10	28358748	28358748	+	Missense_Mutation	SNP	C	T	T	rs147738330		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:28358748C>T	uc001iua.1	-	15	1561	c.1157G>A	c.(1156-1158)CGA>CAA	p.R386Q	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R386Q|MPP7_uc009xla.2_Missense_Mutation_p.R386Q|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	386	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CAGCAGCTTTCGTTTCAGTTC	0.438													11	17					0	0	0.001368	0	0
ZNF438	220929	broad.mit.edu	37	10	31134208	31134208	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:31134208A>T	uc010qdz.1	-	8	2604	c.2169T>A	c.(2167-2169)TGT>TGA	p.C723*	ZNF438_uc001ivn.2_Nonsense_Mutation_p.C674*|ZNF438_uc010qdy.1_Nonsense_Mutation_p.C713*|ZNF438_uc001ivo.3_Nonsense_Mutation_p.C287*|ZNF438_uc009xlg.2_Nonsense_Mutation_p.C723*|ZNF438_uc001ivp.3_Nonsense_Mutation_p.C713*|ZNF438_uc010qea.1_Nonsense_Mutation_p.C723*|ZNF438_uc010qeb.1_Nonsense_Mutation_p.C723*	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	723					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				TCAGTCTTGGACATGCATGTG	0.527													21	16					0	0	0.001882	0	0
CCDC7	221016	broad.mit.edu	37	10	32742280	32742280	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:32742280C>T	uc001iwj.2	+	3	858	c.288C>T	c.(286-288)TCC>TCT	p.S96S	CCDC7_uc009xlu.1_RNA|CCDC7_uc001iwk.2_Silent_p.S96S|CCDC7_uc009xlv.2_RNA|CCDC7_uc009xlw.1_RNA|CCDC7_uc009xlx.1_Silent_p.S96S|CCDC7_uc009xly.1_RNA	NM_145023	NP_659460	Q96M83	CCDC7_HUMAN	coiled-coil domain containing 7	96											0		Breast(68;0.000207)|Prostate(175;0.0107)				AGGTTGTTTCCACTTTGGAAG	0.259													12	7					0	0	0.003163	0	0
CUL2	8453	broad.mit.edu	37	10	35328007	35328007	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:35328007G>A	uc001ixv.2	-	9	928	c.718C>T	c.(718-720)CTA>TTA	p.L240L	CUL2_uc009xma.2_Silent_p.L109L|CUL2_uc010qer.1_Silent_p.L259L|CUL2_uc001ixw.2_Silent_p.L240L|CUL2_uc010qes.1_Silent_p.L177L	NM_003591	NP_003582	Q13617	CUL2_HUMAN	cullin 2	240					cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex	ubiquitin protein ligase binding			ovary(3)	3						AATCTACCTAGAACCTATAAA	0.318													14	12					0	0	0.002450	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37421216	37421216	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:37421216A>T	uc001iza.1	+	4	490	c.391A>T	c.(391-393)ATT>TTT	p.I131F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	187	ANK 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGTGAGCAAATTGTGGAATT	0.289													36	37					0	0	0.003610	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37440991	37440991	+	Missense_Mutation	SNP	C	T	T	rs45515098		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:37440991C>T	uc001iza.1	+	12	1580	c.1481C>T	c.(1480-1482)CCG>CTG	p.P494L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	550						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TTTATAGATCCGATGTTCCCA	0.294													26	26					0	0	0.006320	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37482170	37482170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:37482170G>A	uc001iza.1	+	27	2529	c.2430G>A	c.(2428-2430)ATG>ATA	p.M810I		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	866						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TGATGGACATGCAAACTTTCA	0.294													11	38					0	0	0.001368	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37488714	37488714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:37488714G>A	uc001iza.1	+	30	2707	c.2608G>A	c.(2608-2610)GAG>AAG	p.E870K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	926						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TTGGGATTCTGAGGTACTATG	0.299													6	13					0	0	0.003080	0	0
ZNF25	219749	broad.mit.edu	37	10	38241797	38241797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:38241797G>A	uc001ize.1	-	6	734	c.629C>T	c.(628-630)TCC>TTC	p.S210F	ZNF25_uc001izf.1_Missense_Mutation_p.S174F	NM_145011	NP_659448	P17030	ZNF25_HUMAN	zinc finger protein 25	210	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|central_nervous_system(1)	4		all_neural(218;0.0218)|Breast(68;0.0389)|Ovarian(717;0.0443)|Renal(717;0.157)				CTGGTAGAAGGATTTTTCACA	0.388													26	60					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	10	42947111	42947111	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:42947111G>A	uc001izx.2	-	3		c.644C>T								Homo sapiens cyclin Y-like 2, mRNA (cDNA clone IMAGE:4704933), with apparent retained intron.																		TGGTCAGAAGGGTTGGGCTCC	0.358													3	11					0	0	0.004672	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43018724	43018724	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:43018724G>A	uc001jab.3	-	4		c.2530C>T			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						TCCAATTTGAGGATCACTTCT	0.428													10	17					0	0	0.000673	0	0
BMS1	9790	broad.mit.edu	37	10	43285863	43285863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:43285863G>A	uc001jaj.2	+	5	898	c.540G>A	c.(538-540)ATG>ATA	p.M180I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	180					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTAAAATTATGGGAGTTCTCA	0.413													19	51					0	0	0.003954	0	0
HNRNPF	3185	broad.mit.edu	37	10	43883070	43883070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:43883070G>A	uc009xmh.1	-	3	750	c.263C>T	c.(262-264)TCC>TTC	p.S88F	HNRNPF_uc001jar.2_Missense_Mutation_p.S88F|HNRNPF_uc001jas.2_Missense_Mutation_p.S88F|HNRNPF_uc001jat.2_Missense_Mutation_p.S88F|HNRNPF_uc001jav.2_Missense_Mutation_p.S88F|HNRNPF_uc001jau.2_Missense_Mutation_p.S88F|uc010qfa.1_3'UTR	NM_001098208	NP_001091678	P52597	HNRPF_HUMAN	heterogeneous nuclear ribonucleoprotein F	88					regulation of RNA splicing	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding				0						GGTTCTGTGGGACTTGAACAC	0.512													43	33					0	0	0.002852	0	0
C10orf10	11067	broad.mit.edu	37	10	45472977	45472977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:45472977C>T	uc001jbr.3	-	2	792	c.502G>A	c.(502-504)GAT>AAT	p.D168N	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	168						mitochondrion					0						TGCTGCCCATCCTGCGGTGGT	0.637													24	18					0	0	0.004656	0	0
C10orf25	220979	broad.mit.edu	37	10	45495838	45495838	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:45495838G>T	uc001jbv.1	-	2	386	c.357C>A	c.(355-357)TGC>TGA	p.C119*	C10orf25_uc010qff.1_RNA|ZNF22_uc001jbw.2_5'Flank	NM_001039380	NP_001034469	Q5T742	CJ025_HUMAN	hypothetical protein LOC220979 precursor	119						extracellular region					0						agatgactgagcACGGCCAGG	0.199													4	17					1.23904e-05	1.79e-05	0.000602	1	0
ANUBL1	93550	broad.mit.edu	37	10	46143839	46143839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:46143839C>T	uc001jcp.3	-	5	714	c.472G>A	c.(472-474)GAT>AAT	p.D158N	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.D158N|ANUBL1_uc009xmu.2_Missense_Mutation_p.D84N|ANUBL1_uc001jcn.3_Missense_Mutation_p.D84N|ANUBL1_uc001jco.3_Missense_Mutation_p.D158N|ANUBL1_uc001jcq.2_RNA	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	158							zinc ion binding				0						TCTCCCCTATCTACTGCAGGA	0.408													36	48					0	0	0.002522	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999715	46999715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:46999715C>T	uc001jec.2	+	3	970	c.835C>T	c.(835-837)CAC>TAC	p.H279Y	GPRIN2_uc010qfq.1_Missense_Mutation_p.H42Y	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	279											0						GGTGAAGATCCACTGTAGGTT	0.612													16	75					0	0	0.004990	0	0
PPYR1	5540	broad.mit.edu	37	10	47087258	47087258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:47087258G>A	uc001jee.2	+	3	894	c.475G>A	c.(475-477)GGG>AGG	p.G159R	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.G159R	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	159	Helical; Name=4; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GGCCTACCTGGGGATTGTGCT	0.582													21	146					0	0	0.001523	0	0
FAM35B2	439965	broad.mit.edu	37	10	47381107	47381107	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:47381107C>T	uc010qfz.1	+	1		c.1388C>T				NR_027634				Homo sapiens cDNA FLJ59018 complete cds, highly similar to Protein FAM35A.												0						ACATAAAATTCGGACCAAATT	0.343													13	26					0	0	0.002445	0	0
RBP3	5949	broad.mit.edu	37	10	48388736	48388736	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:48388736G>A	uc001jez.2	-	1	2256	c.2142C>T	c.(2140-2142)CCC>CCT	p.P714P		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	714	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGGGTGGTGGGGGTGCTTCCT	0.632													10	31					0	0	0.000978	0	0
RBP3	5949	broad.mit.edu	37	10	48389674	48389674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:48389674C>T	uc001jez.2	-	1	1318	c.1204G>A	c.(1204-1206)GAC>AAC	p.D402N		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	402	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCTGCAGCGTCGGGCGCGGGC	0.652													16	39					0	0	0.004990	0	0
RBP3	5949	broad.mit.edu	37	10	48389873	48389873	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:48389873C>T	uc001jez.2	-	1	1119	c.1005G>A	c.(1003-1005)GAG>GAA	p.E335E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	335	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	CCTTCAGGACCTCCTGGAGGC	0.647													8	17					0	0	0.003080	0	0
C10orf71	118461	broad.mit.edu	37	10	50531805	50531805	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50531805C>T	uc010qgp.1	+	3	1554	c.1215C>T	c.(1213-1215)AAC>AAT	p.N405N		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	405											0						CACAGACCAACCAGAGAGGCC	0.458													18	66					0	0	0.007413	0	0
ERCC6	2074	broad.mit.edu	37	10	50682237	50682238	+	Missense_Mutation	DNP	AG	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50682237_50682238AG>TA	uc001jhs.3	-	13	2587_2588	c.2433_2434CT>TA	c.(2431-2436)CTCTTT>CTTATT	p.F812I	ERCC6_uc009xod.2_5'UTR|ERCC6_uc010qgr.1_Missense_Mutation_p.F182I|ERCC6_uc001jhr.3_Missense_Mutation_p.F180I	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	812					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CCTCCAGAAAAGAGATCAGGGT	0.406								Direct_reversal_of_damage|NER					13	57					0	0	0.004672	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819632	50819632	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50819632C>T	uc001jhw.2	+	1	1286	c.846C>T	c.(844-846)ATC>ATT	p.I282I	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	282	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						GCACTCCCATCCACCGCCTCA	0.652													20	48					0	0	0.002299	0	0
CHAT	1103	broad.mit.edu	37	10	50854610	50854610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50854610G>A	uc001jhz.2	+	8	1324	c.1171G>A	c.(1171-1173)GAC>AAC	p.D391N	CHAT_uc001jhv.1_Missense_Mutation_p.D273N|CHAT_uc001jhx.1_Missense_Mutation_p.D273N|CHAT_uc001jhy.1_Missense_Mutation_p.D273N|CHAT_uc001jia.2_Missense_Mutation_p.D273N|CHAT_uc010qgs.1_Missense_Mutation_p.D273N	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	391					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	TGTATGCCTGGACGCGCCAGG	0.642													37	39					0	0	0.002522	0	0
CHAT	1103	broad.mit.edu	37	10	50860052	50860052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50860052G>A	uc001jhz.2	+	11	1787	c.1634G>A	c.(1633-1635)AGG>AAG	p.R545K	CHAT_uc001jhv.1_Missense_Mutation_p.R427K|CHAT_uc001jhx.1_Missense_Mutation_p.R427K|CHAT_uc001jhy.1_Missense_Mutation_p.R427K|CHAT_uc001jia.2_Missense_Mutation_p.R427K|CHAT_uc010qgs.1_Missense_Mutation_p.R427K	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	545					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	GCCTTCTACAGGTGAGTGAAG	0.512													11	22					0	0	0.000978	0	0
CHAT	1103	broad.mit.edu	37	10	50870760	50870760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50870760G>A	uc001jhz.2	+	14	2062	c.1909G>A	c.(1909-1911)GAG>AAG	p.E637K	CHAT_uc001jhv.1_Missense_Mutation_p.E519K|CHAT_uc001jhx.1_Missense_Mutation_p.E519K|CHAT_uc001jhy.1_Missense_Mutation_p.E519K|CHAT_uc001jia.2_Missense_Mutation_p.E519K|CHAT_uc010qgs.1_Missense_Mutation_p.E519K	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	637					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CATGTGCAAGGAGCTGCCCGA	0.577													21	64					0	0	0.002299	0	0
OGDHL	55753	broad.mit.edu	37	10	50952095	50952095	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:50952095G>A	uc001jie.2	-	14	1948	c.1806C>T	c.(1804-1806)ACC>ACT	p.T602T	OGDHL_uc009xog.2_Silent_p.T629T|OGDHL_uc010qgt.1_Silent_p.T545T|OGDHL_uc010qgu.1_Silent_p.T393T|OGDHL_uc009xoh.2_Silent_p.T393T	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	602					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TGCCGATGTGGGTGAGCATGT	0.617													18	21					0	0	0.001216	0	0
MSMB	4477	broad.mit.edu	37	10	51555799	51555799	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:51555799C>T	uc001jiq.2	+	2	104	c.72C>T	c.(70-72)TTC>TTT	p.F24F	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|MSMB_uc001jir.2_Silent_p.F24F	NM_002443	NP_002434	P08118	MSMB_HUMAN	beta-microseminoprotein isoform a precursor	24						extracellular space|nucleus				ovary(2)	2						CATGCTATTTCATACCTAATG	0.438									Hereditary_Prostate_Cancer				10	30					0	0	0.000978	0	0
SGMS1	259230	broad.mit.edu	37	10	52071147	52071147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:52071147C>T	uc001jje.2	-	9	1724	c.770G>A	c.(769-771)CGA>CAA	p.R257Q	SGMS1_uc010qhk.1_Missense_Mutation_p.R88Q|SGMS1_uc009xot.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	263					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						CATTATTCTTCGCAGTTGGGC	0.453													23	9					0	0	0.002780	0	0
PRKG1	5592	broad.mit.edu	37	10	53814296	53814296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:53814296C>T	uc001jjm.2	+	6	964	c.770C>T	c.(769-771)ACC>ATC	p.T257I	PRKG1_uc001jjn.2_Missense_Mutation_p.T272I|PRKG1_uc001jjo.2_Missense_Mutation_p.T272I|PRKG1_uc009xow.1_5'UTR	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	257	cGMP 2.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		AGAGGGGACACCTTCTTTATC	0.413													10	41					0	0	0.001855	0	0
PCDH15	65217	broad.mit.edu	37	10	55566661	55566661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:55566661G>A	uc010qhq.1	-	36	5122	c.4727C>T	c.(4726-4728)CCC>CTC	p.P1576L	PCDH15_uc010qhr.1_Missense_Mutation_p.P1571L	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTCTTAAAGGGCCCTCCCAG	0.453										HNSCC(58;0.16)			48	102					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55582628	55582628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:55582628C>T	uc001jju.1	-	33	5253	c.4858G>A	c.(4858-4860)GGT>AGT	p.G1620S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G1617S|PCDH15_uc010qhw.1_Missense_Mutation_p.G1580S|PCDH15_uc010qhx.1_Missense_Mutation_p.G1551S|PCDH15_uc010qhy.1_Missense_Mutation_p.G1627S|PCDH15_uc010qhz.1_Missense_Mutation_p.G1622S|PCDH15_uc010qia.1_Missense_Mutation_p.G1600S|PCDH15_uc010qib.1_Missense_Mutation_p.G1597S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1620	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTGCTGCTACCTCTTTTGTTT	0.413										HNSCC(58;0.16)			62	57					0	0	0.003610	0	0
PCDH15	65217	broad.mit.edu	37	10	55583058	55583058	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:55583058C>T	uc001jju.1	-	33	4823	c.4428G>A	c.(4426-4428)AGG>AGA	p.R1476R	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.R1473R|PCDH15_uc010qhw.1_Silent_p.R1436R|PCDH15_uc010qhx.1_Silent_p.R1407R|PCDH15_uc010qhy.1_Silent_p.R1483R|PCDH15_uc010qhz.1_Silent_p.R1478R|PCDH15_uc010qia.1_Silent_p.R1456R|PCDH15_uc010qib.1_Silent_p.R1453R	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1476	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTTGATGTTTCCTGTCTTCTG	0.383										HNSCC(58;0.16)			41	32					0	0	0.003610	0	0
FAM13C	220965	broad.mit.edu	37	10	61029849	61029849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61029849C>T	uc001jkn.2	-	8	747	c.613G>A	c.(613-615)GAT>AAT	p.D205N	FAM13C_uc001jko.2_Missense_Mutation_p.D205N|FAM13C_uc010qid.1_Missense_Mutation_p.D122N|FAM13C_uc010qie.1_Missense_Mutation_p.D122N|FAM13C_uc010qif.1_Missense_Mutation_p.D227N|FAM13C_uc001jkp.2_Missense_Mutation_p.D122N	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	205										ovary(2)	2						TTCTGCCCATCTTTGTGGACT	0.493													31	19					0	0	0.004878	0	0
FAM13C	220965	broad.mit.edu	37	10	61043173	61043174	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61043173_61043174GG>AT	uc001jkn.2	-	7	675_676	c.541_542CC>AT	c.(541-543)CCG>ATG	p.P181M	FAM13C_uc001jko.2_Missense_Mutation_p.P181M|FAM13C_uc010qid.1_Missense_Mutation_p.P98M|FAM13C_uc010qie.1_Missense_Mutation_p.P98M|FAM13C_uc010qif.1_Missense_Mutation_p.P203M|FAM13C_uc001jkp.2_Missense_Mutation_p.P98M	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	181										ovary(2)	2						TGCTGGCGCCGGGTCCTTGACT	0.525													93	75					0	0	0.004672	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413575	61413575	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61413575C>T	uc010qig.1	-	5	1658	c.1209G>A	c.(1207-1209)GGG>GGA	p.G403G		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	403	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						ACCCTAGGATCCCAGAAAGCA	0.413													13	48					0	0	0.001855	0	0
ANK3	288	broad.mit.edu	37	10	61830713	61830713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61830713G>A	uc001jky.2	-	37	10118	c.9926C>T	c.(9925-9927)CCT>CTT	p.P3309L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3309					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCCCCGGGAGGAACTGGTGA	0.443													22	87					0	0	0.004656	0	0
ANK3	288	broad.mit.edu	37	10	61835032	61835032	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61835032G>A	uc001jky.2	-	37	5799	c.5607C>T	c.(5605-5607)TTC>TTT	p.F1869F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1869	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AAGTTCGACTGAAGTGAGGCT	0.418													25	61					0	0	0.004656	0	0
ANK3	288	broad.mit.edu	37	10	61835477	61835477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61835477G>A	uc001jky.2	-	37	5354	c.5162C>T	c.(5161-5163)TCC>TTC	p.S1721F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1721	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTTAGAGGGGAAATAGATCC	0.408													10	48					0	0	0.001368	0	0
ANK3	288	broad.mit.edu	37	10	61932885	61932885	+	Silent	SNP	G	A	A	rs150715672		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61932885G>A	uc001jky.2	-	19	2436	c.2244C>T	c.(2242-2244)TTC>TTT	p.F748F	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Silent_p.F731F|ANK3_uc001jkz.3_Silent_p.F742F|ANK3_uc001jlb.1_Silent_p.F277F|ANK3_uc001jlc.1_Silent_p.F409F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	748	ANK 21.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding	p.F748F(1)		skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTGGAGCAGGAAATTAACAA	0.338													19	10					0	0	0.001882	0	0
ANK3	288	broad.mit.edu	37	10	61967832	61967832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:61967832G>A	uc001jky.2	-	10	1348	c.1156C>T	c.(1156-1158)CTC>TTC	p.L386F	ANK3_uc010qih.1_Missense_Mutation_p.L369F|ANK3_uc001jkz.3_Missense_Mutation_p.L380F|ANK3_uc001jlb.1_5'UTR|ANK3_uc001jlc.1_Missense_Mutation_p.L47F	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	386	ANK 10.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTATCCAAGAGAACCTTGGCA	0.527													24	41					0	0	0.002780	0	0
ANK3	288	broad.mit.edu	37	10	62149192	62149192	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:62149192C>T	uc001jky.2	-	1	297	c.105G>A	c.(103-105)CGG>CGA	p.R35R	ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jlb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	35					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCTTTTTCTTCCGATCCCGGG	0.398													30	56					0	0	0.002836	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62652648	62652649	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:62652648_62652649GG>AA	uc001jli.2	-	6	839_840	c.401_402CC>TT	c.(400-402)CCC>CTT	p.P134L	RHOBTB1_uc001jlh.2_Missense_Mutation_p.P134L|RHOBTB1_uc001jlj.2_Missense_Mutation_p.P134L|RHOBTB1_uc001jlk.2_Missense_Mutation_p.P134L|RHOBTB1_uc009xpe.1_Intron	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	134	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					CAAGGATAACGGGTGTTCGAGG	0.495													12	62					0	0	0.004672	0	0
ARID5B	84159	broad.mit.edu	37	10	63850952	63850952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:63850952C>T	uc001jlt.1	+	10	1756	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	577					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					AAACAAGAATCCAAACTGTGC	0.547													17	36					0	0	0.001882	0	0
LRRTM3	347731	broad.mit.edu	37	10	68857449	68857449	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:68857449G>A	uc001jmz.1	+	3	2191	c.1641G>A	c.(1639-1641)ACG>ACA	p.T547T	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	547	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCTTTGAAACGAATGCACAGG	0.463													28	57					0	0	0.007291	0	0
MYPN	84665	broad.mit.edu	37	10	69961688	69961688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:69961688C>T	uc001jnm.3	+	19	3781	c.3596C>T	c.(3595-3597)CCC>CTC	p.P1199L	MYPN_uc001jnn.3_Missense_Mutation_p.P924L|MYPN_uc001jno.3_Missense_Mutation_p.P1199L|MYPN_uc009xpt.2_Missense_Mutation_p.P1199L|MYPN_uc010qit.1_Missense_Mutation_p.P905L|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1199	Interaction with ACTN.|Ig-like 5.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						ATAGGCATGCCCCCACCTGTG	0.552													27	97					0	0	0.004656	0	0
TET1	80312	broad.mit.edu	37	10	70332986	70332986	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:70332986C>T	uc001jok.3	+	2	1396	c.891C>T	c.(889-891)TAC>TAT	p.Y297Y		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	297					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						ATGATTGCTACCCCACCTCCA	0.418													22	90					0	0	0.003330	0	0
HK1	3098	broad.mit.edu	37	10	71119753	71119753	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:71119753C>T	uc001jpl.3	+	3	428	c.327C>T	c.(325-327)TCC>TCT	p.S109S	HK1_uc001jpg.3_Silent_p.S97S|HK1_uc001jph.3_Silent_p.S113S|HK1_uc001jpi.3_Silent_p.S113S|HK1_uc001jpj.3_Silent_p.S144S|HK1_uc001jpk.3_Silent_p.S108S|HK1_uc009xqd.2_Intron	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	109	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						ACATGGAGTCCGAGGTTTATG	0.547													15	31					0	0	0.004007	0	0
LRRC20	55222	broad.mit.edu	37	10	72136260	72136260	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:72136260G>A	uc001jqx.1	-	2	252	c.30C>T	c.(28-30)GCC>GCT	p.A10A	LRRC20_uc001jqy.1_Silent_p.A10A|LRRC20_uc001jqz.1_Silent_p.A10A	NM_207119	NP_997002	Q8TCA0	LRC20_HUMAN	leucine rich repeat containing 20 isoform 1	10											0						TTGCTACTCTGGCCACGGCCT	0.602													42	80					0	0	0.003610	0	0
KIAA1274	27143	broad.mit.edu	37	10	72291073	72291073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:72291073G>A	uc001jrd.3	+	5	777	c.496G>A	c.(496-498)GAA>AAA	p.E166K		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	166										ovary(2)|central_nervous_system(1)	3						TGTGCGGGAGGAACCTGTGCT	0.557													22	50					0	0	0.002780	0	0
KIAA1274	27143	broad.mit.edu	37	10	72291163	72291163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:72291163G>A	uc001jrd.3	+	5	867	c.586G>A	c.(586-588)GGA>AGA	p.G196R		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	196										ovary(2)|central_nervous_system(1)	3						CCAGGGCCTTGGACCCGGGGT	0.617													15	35					0	0	0.004990	0	0
KIAA1274	27143	broad.mit.edu	37	10	72291208	72291208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:72291208G>A	uc001jrd.3	+	5	912	c.631G>A	c.(631-633)GAG>AAG	p.E211K		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	211										ovary(2)|central_nervous_system(1)	3						CATCCGGAAAGAGGTGAGGAC	0.617													10	24					0	0	0.000673	0	0
KIAA1274	27143	broad.mit.edu	37	10	72300953	72300953	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:72300953C>T	uc001jrd.3	+	16	2285	c.2004C>T	c.(2002-2004)ACC>ACT	p.T668T	KIAA1274_uc001jre.3_5'UTR	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	668										ovary(2)|central_nervous_system(1)	3						AGGGCCGTACCACAACTGCGA	0.612													15	46					0	0	0.004990	0	0
UNC5B	219699	broad.mit.edu	37	10	73051390	73051390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:73051390G>A	uc001jro.2	+	10	1941	c.1496G>A	c.(1495-1497)GGG>GAG	p.G499E	UNC5B_uc001jrp.2_Missense_Mutation_p.G488E	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	499	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CTGGCAGATGGGGCTGACCTG	0.647													19	38					0	0	0.001523	0	0
UNC5B	219699	broad.mit.edu	37	10	73051439	73051439	+	Silent	SNP	C	T	T	rs150389249	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:73051439C>T	uc001jro.2	+	10	1990	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	UNC5B_uc001jrp.2_Silent_p.F504F	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	515	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CTAGCGATTTCGCCCGGGACA	0.682													28	23					0	0	0.001786	0	0
SLC29A3	55315	broad.mit.edu	37	10	73082758	73082758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:73082758C>T	uc001jrr.3	+	2	304	c.247C>T	c.(247-249)CGC>TGC	p.R83C	SLC29A3_uc001jrs.3_Missense_Mutation_p.R83C|SLC29A3_uc010qjq.1_5'UTR|SLC29A3_uc001jrt.3_5'UTR|SLC29A3_uc001jru.3_Intron	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	83	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						GTTCAAACTCCGCAACTCCTC	0.552													20	30					0	0	0.001523	0	0
SLC29A3	55315	broad.mit.edu	37	10	73082809	73082809	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:73082809C>T	uc001jrr.3	+	2	355	c.298C>T	c.(298-300)CTG>TTG	p.L100L	SLC29A3_uc001jrs.3_Silent_p.L100L|SLC29A3_uc010qjq.1_5'UTR|SLC29A3_uc001jrt.3_5'UTR|SLC29A3_uc001jru.3_Intron	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	100	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CTCAGACATCCTGGTAAGGGC	0.552													18	20					0	0	0.007413	0	0
CDH23	64072	broad.mit.edu	37	10	73550937	73550937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:73550937C>T	uc001jrx.3	+	45	6475	c.6098C>T	c.(6097-6099)TCG>TTG	p.S2033L		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2033	Cadherin 19.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GAGGCATTCTCGCCACCCATC	0.622													4	13					0	0	0.000248	0	0
CCDC109A	90550	broad.mit.edu	37	10	74620224	74620224	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:74620224C>T	uc001jtc.2	+	4	456	c.435C>T	c.(433-435)CTC>CTT	p.L145L	CCDC109A_uc009xqp.1_RNA|CCDC109A_uc009xqq.1_RNA|CCDC109A_uc010qjy.1_RNA|CCDC109A_uc009xqr.2_Silent_p.L145L|CCDC109A_uc001jtd.2_Silent_p.L96L	NM_138357	NP_612366	Q8NE86	MCU_HUMAN	coiled-coil domain containing 109A	145	Mitochondrial matrix (Potential).				elevation of mitochondrial calcium ion concentration|mitochondrial calcium ion transport|protein complex oligomerization	integral to membrane|mitochondrial inner membrane	protein binding				0	Prostate(51;0.0198)					ACCTCCTCCTCCTTGATGACT	0.398													23	67					0	0	0.004656	0	0
VCL	7414	broad.mit.edu	37	10	75849867	75849867	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:75849867A>G	uc001jwd.2	+	10	1357	c.1263A>G	c.(1261-1263)TTA>TTG	p.L421L	VCL_uc009xrr.2_Silent_p.L170L|VCL_uc010qky.1_Silent_p.L328L|VCL_uc001jwe.2_Silent_p.L421L|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	421	N-terminal globular head.|3 X 112 AA tandem repeats.|2.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					TAGCAGAATTATGTGATGATC	0.418													24	56					0	0	0.004656	0	0
ADK	132	broad.mit.edu	37	10	75960564	75960564	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:75960564C>T	uc001jwi.2	+	2	180	c.108C>T	c.(106-108)ATC>ATT	p.I36I	ADK_uc010qlb.1_Silent_p.I36I|ADK_uc001jwj.2_Silent_p.I19I|ADK_uc010qlc.1_Silent_p.I19I	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	36					purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	TGCTTGACATCTCTGCTGTAG	0.303													15	15					0	0	0.007413	0	0
KCNMA1	3778	broad.mit.edu	37	10	78943217	78943217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:78943217G>A	uc001jxn.2	-	5	947	c.770C>T	c.(769-771)CCC>CTC	p.P257L	KCNMA1_uc001jxj.2_Missense_Mutation_p.P257L|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.P77L|KCNMA1_uc001jxo.2_Missense_Mutation_p.P257L|KCNMA1_uc001jxm.2_Missense_Mutation_p.P257L|KCNMA1_uc001jxq.2_Missense_Mutation_p.P257L	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	257	Helical; Name=Segment S3; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CACAAACACGGGGGGCACCGT	0.458													19	14					0	0	0.001523	0	0
DLG5	9231	broad.mit.edu	37	10	79593792	79593792	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:79593792A>T	uc001jzk.2	-	9	1698	c.1628T>A	c.(1627-1629)CTG>CAG	p.L543Q	DLG5_uc001jzj.2_Missense_Mutation_p.L298Q|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.L147Q	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	543					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			GTTGTCACACAGTGTCCTGGT	0.612													13	15					0	0	0.004990	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81063817	81063817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:81063817C>T	uc001kaf.2	+	19	2743	c.2171C>T	c.(2170-2172)ACC>ATC	p.T724I	ZMIZ1_uc001kag.2_Missense_Mutation_p.T600I|ZMIZ1_uc010qlq.1_5'Flank	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	724					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			GGCAACACGACCCTCAACGGG	0.617													13	24					0	0	0.001855	0	0
MAT1A	4143	broad.mit.edu	37	10	82034920	82034920	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:82034920C>T	uc001kbw.2	-	7	1059	c.804G>A	c.(802-804)GTG>GTA	p.V268V		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	268					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	CATAGGTGTCCACAATAATCT	0.597													7	16					0	0	0.006214	0	0
NRG3	10718	broad.mit.edu	37	10	83635430	83635430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:83635430C>T	uc001kco.2	+	1	361	c.334C>T	c.(334-336)CCC>TCC	p.P112S	NRG3_uc010qlz.1_Missense_Mutation_p.P112S|NRG3_uc001kcp.2_5'Flank|NRG3_uc001kcq.2_5'Flank	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	112	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		GGGCCAGGACCCCTTCTTCCT	0.478													15	22					0	0	0.004007	0	0
LRIT2	340745	broad.mit.edu	37	10	85984534	85984534	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:85984534G>A	uc001kcy.2	-	2	455	c.447C>T	c.(445-447)TTC>TTT	p.F149F	LRIT2_uc010qmc.1_Silent_p.F149F	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	149	LRR 3.					integral to membrane				ovary(2)	2						GGCTGACCAAGAATTGAAGAG	0.532													41	49					0	0	0.007835	0	0
GRID1	2894	broad.mit.edu	37	10	87489366	87489366	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:87489366C>T	uc001kdl.1	-	9	1340	c.1239G>A	c.(1237-1239)GCG>GCA	p.A413A	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_5'UTR	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	413	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGTCCCATGTCGCCAACTGTG	0.532										Multiple Myeloma(13;0.14)			19	31					0	0	0.001523	0	0
GRID1	2894	broad.mit.edu	37	10	87628888	87628888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:87628888C>T	uc001kdl.1	-	6	931	c.830G>A	c.(829-831)AGG>AAG	p.R277K	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	277	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CACGGTCATCCTTCCAAGGGC	0.522										Multiple Myeloma(13;0.14)			26	81					0	0	0.002096	0	0
MMRN2	79812	broad.mit.edu	37	10	88704965	88704965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:88704965C>T	uc001kea.2	-	4	588	c.461G>A	c.(460-462)GGA>GAA	p.G154E	MMRN2_uc010qmn.1_Intron|MMRN2_uc009xtb.2_Missense_Mutation_p.G111E	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	154						extracellular space				large_intestine(1)	1						GCTGACTGGTCCATCCTGAGG	0.552													20	15					0	0	0.003330	0	0
AGAP11	119385	broad.mit.edu	37	10	88769359	88769359	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:88769359C>T	uc001kee.2	+	12	2554	c.1350C>T	c.(1348-1350)TCC>TCT	p.S450S	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	450					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTGAGCTGTCCCTGGGCCAGC	0.592													38	89					0	0	0.006999	0	0
AGAP11	119385	broad.mit.edu	37	10	88769434	88769434	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:88769434C>T	uc001kee.2	+	12	2629	c.1425C>T	c.(1423-1425)TCC>TCT	p.S475S	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	475					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CACATGGCTCCCGTGAGGAGG	0.672													66	52					0	0	0.003610	0	0
GLUD1	2746	broad.mit.edu	37	10	88811610	88811610	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:88811610G>A	uc001keh.2	-	13	1672	c.1575C>T	c.(1573-1575)GCC>GCT	p.A525A	GLUD1_uc001keg.2_Silent_p.A358A|GLUD1_uc010qmp.1_Silent_p.A392A	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor	525					glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	TATACTTCATGGCTGTGCGCA	0.458													47	44					0	0	0.003610	0	0
IFIT5	24138	broad.mit.edu	37	10	91177344	91177344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:91177344C>T	uc010qnh.1	+	2	619	c.388C>T	c.(388-390)CCT>TCT	p.P130S	LIPA_uc001kgb.3_5'Flank|LIPA_uc001kgc.3_5'Flank|IFIT5_uc010qng.1_Missense_Mutation_p.P130S	NM_012420	NP_036552	Q13325	IFIT5_HUMAN	interferon-induced protein with	130							binding				0						ATTGTCCAGTCCTTCTAACTA	0.428													17	43					0	0	0.004990	0	0
SLC16A12	387700	broad.mit.edu	37	10	91198441	91198441	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:91198441C>T	uc001kgm.2	-	6	1249	c.858G>A	c.(856-858)CAG>CAA	p.Q286Q	SLC16A12_uc001kgl.2_5'Flank	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	286	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						AAGCAGCTTGCTGATGACTCA	0.433													18	39					0	0	0.007413	0	0
SLC16A12	387700	broad.mit.edu	37	10	91222195	91222195	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:91222195C>T	uc001kgm.2	-	3	442	c.51G>A	c.(49-51)TGG>TGA	p.W17*		NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	17	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						TCATCCAGCCCCAGCCTCCAT	0.463													16	80					0	0	0.006122	0	0
KIF20B	9585	broad.mit.edu	37	10	91497753	91497753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:91497753C>T	uc001kgs.1	+	20	3227	c.3155C>T	c.(3154-3156)TCT>TTT	p.S1052F	KIF20B_uc001kgr.1_Missense_Mutation_p.S1012F|KIF20B_uc001kgt.1_Missense_Mutation_p.S263F|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1052					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						AGGGAAAATTCTTTCCACTCT	0.333													40	75					0	0	0.003214	0	0
FGFBP3	143282	broad.mit.edu	37	10	93668634	93668634	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:93668634C>T	uc001khq.3	-	2	275	c.93G>A	c.(91-93)GGG>GGA	p.G31G		NM_152429	NP_689642	Q8TAT2	FGFP3_HUMAN	fibroblast growth factor binding protein 3	31					positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of vascular permeability	extracellular region	fibroblast growth factor binding|heparin binding				0		Colorectal(252;0.162)				TGCTAGCCGCCCCTTTCTCCC	0.716													4	9					0	0	0.001168	0	0
BTAF1	9044	broad.mit.edu	37	10	93771156	93771156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:93771156C>T	uc001khr.2	+	30	4393	c.4295C>T	c.(4294-4296)TCT>TTT	p.S1432F		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1432	Helicase ATP-binding.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				ATTATTCTTTCTGGAACACCA	0.308													9	13					0	0	0.004482	0	0
IDE	3416	broad.mit.edu	37	10	94247036	94247036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:94247036G>A	uc001kia.2	-	13	1649	c.1573C>T	c.(1573-1575)CCT>TCT	p.P525S	IDE_uc010qnp.1_5'UTR|IDE_uc001khz.2_5'UTR	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	525					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTCTTTGTAGGAAGTTTAAAT	0.328													98	341					0	0	0.003610	0	0
HHEX	3087	broad.mit.edu	37	10	94454438	94454438	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:94454438C>T	uc001kid.2	+	4	789	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_002729	NP_002720	Q03014	HHEX_HUMAN	hematopoietically expressed homeobox	242					anterior/posterior pattern formation|B cell differentiation|cell cycle|DNA conformation change|negative regulation of angiogenesis|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of vascular endothelial growth factor receptor signaling pathway|poly(A)+ mRNA export from nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|Wnt receptor signaling pathway	cytoplasm|nucleus|protein-DNA complex	DNA bending activity|eukaryotic initiation factor 4E binding|protein homodimerization activity|repressing transcription factor binding|sequence-specific DNA binding|TBP-class protein binding|transcription regulatory region DNA binding			ovary(1)	1						CCCCTGCCTCCCAGGAAGACC	0.458													106	269					0	0	0.003610	0	0
CYP26A1	1592	broad.mit.edu	37	10	94837052	94837052	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:94837052G>A	uc001kil.2	+	7	1530	c.1485G>A	c.(1483-1485)GGG>GGA	p.G495G	CYP26A1_uc001kik.1_Silent_p.G426G|CYP26A1_uc001kim.1_Silent_p.G393G	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	495					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				ATTTCCATGGGGAAATCTGAT	0.388													11	36					0	0	0.000673	0	0
PDE6C	5146	broad.mit.edu	37	10	95380735	95380735	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:95380735C>T	uc001kiu.3	+	3	859	c.721C>T	c.(721-723)CAG>TAG	p.Q241*		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	241					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CCGAAGAAGCCAGGTAAAAGG	0.468													55	161					0	0	0.003610	0	0
PIPSL	266971	broad.mit.edu	37	10	95720036	95720036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:95720036C>T	uc009xuj.2	-	1	1637	c.1118G>A	c.(1117-1119)GGA>GAA	p.G373E		NR_002319				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GACAGTGTCTCCGTCATGTAT	0.463													27	57					0	0	0.007291	0	0
PLCE1	51196	broad.mit.edu	37	10	96044689	96044689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96044689C>T	uc001kjk.2	+	22	5636	c.5002C>T	c.(5002-5004)CTT>TTT	p.L1668F	PLCE1_uc010qnx.1_Missense_Mutation_p.L1652F|PLCE1_uc001kjm.2_Missense_Mutation_p.L1360F|PLCE1_uc001kjp.2_Missense_Mutation_p.L26F|uc001kjo.1_Intron	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1668					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GCTTTCTGACCTTGTAATCTA	0.313													13	37					0	0	0.002450	0	0
CYP2C18	1562	broad.mit.edu	37	10	96443650	96443650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96443650G>A	uc001kjv.3	+	1	400	c.74G>A	c.(73-75)GGA>GAA	p.G25E	CYP2C18_uc001kjw.3_Missense_Mutation_p.G25E	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	25					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CAGAGCTCTGGAAGAGGGAGG	0.483													35	21					0	0	0.003755	0	0
CYP2C18	1562	broad.mit.edu	37	10	96495124	96495124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96495124G>A	uc001kjv.3	+	9	1722	c.1396G>A	c.(1396-1398)GAT>AAT	p.D466N	CYP2C18_uc001kjw.3_Missense_Mutation_p.D407N|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Intron	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	466					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TGACCCAAAGGATATTGACAT	0.498													73	77					0	0	0.003610	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540305	96540305	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96540305G>A	uc010qnz.1	+	4	531	c.531G>A	c.(529-531)GTG>GTA	p.V177V	CYP2C19_uc009xus.1_Silent_p.V42V|CYP2C19_uc010qny.1_Silent_p.V155V	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	177					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	CCTGCAATGTGATCTGCTCCA	0.353													74	63					0	0	0.003610	0	0
CYP2C19	1557	broad.mit.edu	37	10	96612635	96612635	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96612635C>T	uc010qnz.1	+	9	1437	c.1437C>T	c.(1435-1437)GTC>GTT	p.V479V	CYP2C19_uc010qny.1_Silent_p.V457V	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	479					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTGCTTCTGTCCCGCCCTTCT	0.463													18	74					0	0	0.001523	0	0
CYP2C9	1559	broad.mit.edu	37	10	96731861	96731861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96731861G>A	uc001kka.3	+	6	845	c.820G>A	c.(820-822)GAA>AAA	p.E274K	CYP2C9_uc009xut.2_Intron	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	274					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCATTCCTAGGAAAAGCACAA	0.353													29	47					0	0	0.007291	0	0
CYP2C9	1559	broad.mit.edu	37	10	96740983	96740983	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:96740983G>A	uc001kka.3	+	7	1030	c.1005G>A	c.(1003-1005)CGG>CGA	p.R335R	CYP2C9_uc009xut.2_Silent_p.R333R	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	335					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GCAGAAACCGGAGCCCCTGCA	0.493													32	81					0	0	0.003755	0	0
ENTPD1	953	broad.mit.edu	37	10	97605216	97605216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:97605216C>T	uc001klh.3	+	6	1000	c.676C>T	c.(676-678)CAA>TAA	p.Q226*	ENTPD1_uc001kle.1_Nonsense_Mutation_p.Q233*|ENTPD1_uc001kli.3_Nonsense_Mutation_p.Q233*|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Nonsense_Mutation_p.Q238*|ENTPD1_uc010qok.1_Nonsense_Mutation_p.Q118*|ENTPD1_uc010qol.1_Nonsense_Mutation_p.Q118*|ENTPD1_uc010qom.1_Nonsense_Mutation_p.Q226*|ENTPD1_uc010qon.1_Nonsense_Mutation_p.Q88*|ENTPD1_uc009xva.2_Nonsense_Mutation_p.Q88*|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	226	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		TTTTGTACCCCAAAACCAGAC	0.458													71	61					0	0	0.003610	0	0
ZNF518A	9849	broad.mit.edu	37	10	97917321	97917321	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:97917321C>T	uc001klp.2	+	6	2099	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Silent_p.F414F|ZNF518A_uc001klr.2_Silent_p.F414F	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	414					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		GTTCAGGTTTCATGAAGACTG	0.413													35	24					0	0	0.003755	0	0
DNTT	1791	broad.mit.edu	37	10	98092340	98092340	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98092340G>A	uc001kmf.2	+	9	1516	c.1346G>A	c.(1345-1347)TGG>TAG	p.W449*	DNTT_uc001kmg.2_Nonsense_Mutation_p.W449*	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	449	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		CTGTTGGGATGGACTGGCTCC	0.577													47	87					0	0	0.003610	0	0
DNTT	1791	broad.mit.edu	37	10	98095702	98095702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98095702G>A	uc001kmf.2	+	10	1584	c.1414G>A	c.(1414-1416)GAT>AAT	p.D472N	DNTT_uc001kmg.2_Missense_Mutation_p.D471N	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	472	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GATGATTCTGGATAACCATGC	0.443													98	92					0	0	0.003610	0	0
OPALIN	93377	broad.mit.edu	37	10	98108077	98108077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98108077G>A	uc001kmj.2	-	5	657	c.218C>T	c.(217-219)TCA>TTA	p.S73L	OPALIN_uc010qor.1_Missense_Mutation_p.S63L|OPALIN_uc001kmi.2_Missense_Mutation_p.S63L|OPALIN_uc001kmk.2_Missense_Mutation_p.S50L|OPALIN_uc010qos.1_RNA	NM_033207	NP_149984	Q96PE5	OPALI_HUMAN	transmembrane protein 10 isoform a	73						Golgi apparatus|integral to membrane|plasma membrane					0						ATCAATTTCTGAAATTTCACA	0.323													12	34					0	0	0.001855	0	0
TLL2	7093	broad.mit.edu	37	10	98155732	98155732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98155732G>A	uc001kml.1	-	12	1656	c.1430C>T	c.(1429-1431)TCT>TTT	p.S477F	TLL2_uc009xvf.1_Missense_Mutation_p.S455F	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	477	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		ATAGTTGGGAGATTGAATCTG	0.498											OREG0020398	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	56					0	0	0.007291	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98376447	98376447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98376447C>T	uc001kmq.2	-	13	2091	c.1963G>A	c.(1963-1965)GAC>AAC	p.D655N	PIK3AP1_uc001kmo.2_Missense_Mutation_p.D254N|PIK3AP1_uc001kmp.2_Missense_Mutation_p.D477N	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	655	Potential.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GTGATGCTGTCTCTTAGCCGT	0.413													24	90					0	0	0.006320	0	0
C10orf12	26148	broad.mit.edu	37	10	98742843	98742843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:98742843C>T	uc001kmv.2	+	1	1803	c.1696C>T	c.(1696-1698)CAC>TAC	p.H566Y		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	566										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		TGACAGTTTCCACACGGAAAC	0.498													34	26					0	0	0.002836	0	0
GOT1	2805	broad.mit.edu	37	10	101163312	101163312	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:101163312G>A	uc001kpr.2	-	7	1081	c.873C>T	c.(871-873)ATC>ATT	p.I291I	GOT1_uc009xwh.2_RNA|GOT1_uc001kpq.1_Silent_p.I4I	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	291					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TAATCCGCACGATCTTCTCCA	0.537													29	70					0	0	0.001786	0	0
SLC25A28	81894	broad.mit.edu	37	10	101372327	101372327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:101372327G>A	uc001kpx.2	-	3	679	c.550C>T	c.(550-552)CAT>TAT	p.H184Y	SLC25A28_uc001kpy.2_5'UTR	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	184	Solcar 2.|Helical; Name=3; (Potential).				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		GCTGCATCATGAAGTAATGTT	0.498											OREG0020433	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	87					0	0	0.003271	0	0
DNMBP	23268	broad.mit.edu	37	10	101731860	101731860	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:101731860G>A	uc001kqj.2	-	2	114	c.22C>T	c.(22-24)CGA>TGA	p.R8*		NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	8	SH3 1.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AAAATGGCTCGAACCACTGAG	0.403													38	83					0	0	0.004878	0	0
CHUK	1147	broad.mit.edu	37	10	101969473	101969473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:101969473G>A	uc001kqp.2	-	10	1062	c.1007C>T	c.(1006-1008)TCA>TTA	p.S336L		NM_001278	NP_001269	O15111	IKKA_HUMAN	conserved helix-loop-helix ubiquitous kinase	336					I-kappaB phosphorylation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|identical protein binding|IkappaB kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|breast(1)	7		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		AGACTGTAGTGAATGAAGACT	0.363													27	20					0	0	0.005443	0	0
PDZD7	79955	broad.mit.edu	37	10	102782035	102782035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:102782035G>A	uc001kso.1	-	5	865	c.650C>T	c.(649-651)TCC>TTC	p.S217F	PDZD7_uc001ksn.2_Missense_Mutation_p.S217F	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	217	PDZ 2.					cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		GAAGTCGTCGGAGGTTGTGTA	0.587													10	33					0	0	0.000673	0	0
PDZD7	79955	broad.mit.edu	37	10	102789776	102789776	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:102789776G>A	uc001kso.1	-	2	416	c.201C>T	c.(199-201)GTC>GTT	p.V67V	PDZD7_uc001ksn.2_Silent_p.V67V|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	67						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		TGATGAGGATGACGCGTCCCA	0.647													22	64					0	0	0.003330	0	0
TLX1NB	100038246	broad.mit.edu	37	10	102849570	102849570	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:102849570C>T	uc001ksv.2	-	3	1390	c.93G>A	c.(91-93)GGG>GGA	p.G31G		NM_001085398	NP_001078867	P0CAT3	TLXNB_HUMAN	TLX1 divergent	31											0						CTGCCCCCTCCCCAGGCCCCA	0.657													5	8					0	0	0.000602	0	0
FGF8	2253	broad.mit.edu	37	10	103530315	103530315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:103530315G>A	uc001ktp.1	-	6	643	c.473C>T	c.(472-474)GCG>GTG	p.A158V	FGF8_uc001ktq.1_Missense_Mutation_p.A169V|FGF8_uc001ktr.1_Missense_Mutation_p.A140V|FGF8_uc001kts.1_Missense_Mutation_p.A129V|FGF8_uc009xwr.1_Missense_Mutation_p.A65V	NM_033164	NP_149354	P55075	FGF8_HUMAN	fibroblast growth factor 8 isoform E precursor	158					bone development|dopaminergic neuron differentiation|fibroblast growth factor receptor signaling pathway|gastrulation|gonad development|insulin receptor signaling pathway|mesonephros development|metanephros development|negative regulation of cardiac muscle tissue development|neuroepithelial cell differentiation|odontogenesis|positive regulation of cell division|positive regulation of cell proliferation	extracellular region|extracellular space	growth factor activity|growth factor activity|type 1 fibroblast growth factor receptor binding|type 2 fibroblast growth factor receptor binding				0		Colorectal(252;0.122)		Epithelial(162;3.94e-09)|all cancers(201;2.13e-07)		ATTCTGCAGCGCTGTGTAGTT	0.622													10	41					0	0	0.000978	0	0
PPRC1	23082	broad.mit.edu	37	10	103899555	103899555	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:103899555C>T	uc001kum.2	+	5	1329	c.1290C>T	c.(1288-1290)CCC>CCT	p.P430P	PPRC1_uc001kun.2_Silent_p.P310P|PPRC1_uc010qqj.1_Silent_p.P430P|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	430					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TATTGAAGCCCAGGGAGGTCG	0.572													18	42					0	0	0.004990	0	0
PPRC1	23082	broad.mit.edu	37	10	103901607	103901607	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:103901607C>T	uc001kum.2	+	5	3381	c.3342C>T	c.(3340-3342)CCC>CCT	p.P1114P	PPRC1_uc001kun.2_Silent_p.P994P|PPRC1_uc010qqj.1_Silent_p.P1114P|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1114	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		AGAAGCCCCCCTTGCCTGCTA	0.592													9	16					0	0	0.004482	0	0
PSD	5662	broad.mit.edu	37	10	104173533	104173533	+	Missense_Mutation	SNP	G	A	A	rs144187898	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:104173533G>A	uc001kvg.1	-	5	2073	c.1546C>T	c.(1546-1548)CTT>TTT	p.L516F	PSD_uc001kvh.1_Missense_Mutation_p.L137F|PSD_uc009xxd.1_Missense_Mutation_p.L516F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	516	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		TACCTGCCAAGGGGTGCTGCC	0.612													10	30					0	0	0.001368	0	0
PSD	5662	broad.mit.edu	37	10	104173805	104173805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:104173805G>A	uc001kvg.1	-	5	1801	c.1274C>T	c.(1273-1275)TCG>TTG	p.S425L	PSD_uc001kvh.1_Missense_Mutation_p.S46L|PSD_uc009xxd.1_Missense_Mutation_p.S425L	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	425					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGCCTCCAGCGAGGCGAGGCT	0.652													29	19					0	0	0.002096	0	0
FBXL15	79176	broad.mit.edu	37	10	104181773	104181773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:104181773C>T	uc001kvk.2	+	3	1753	c.437C>T	c.(436-438)TCG>TTG	p.S146L	PSD_uc001kvg.1_5'Flank|PSD_uc001kvh.1_5'Flank|PSD_uc009xxd.1_5'Flank|PSD_uc001kvi.1_5'Flank|FBXL15_uc001kvj.1_Missense_Mutation_p.S146L|FBXL15_uc001kvl.1_Missense_Mutation_p.S233L	NM_024326	NP_077302	Q9H469	FXL15_HUMAN	F-box and leucine-rich repeat protein 15	146	LRR 1.|Interaction with SMURF1.				bone mineralization|dorsal/ventral pattern formation|G2/M transition of mitotic cell cycle|positive regulation of BMP signaling pathway|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding			kidney(1)	1		Colorectal(252;0.207)		Epithelial(162;1.19e-08)|all cancers(201;2.65e-07)		CAGCGCCTGTCGCTCGCGCAC	0.731													4	13					0	0	0.000248	0	0
SFXN2	118980	broad.mit.edu	37	10	104486897	104486897	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:104486897C>T	uc001kwb.2	+	3	481	c.315C>T	c.(313-315)TTC>TTT	p.F105F	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	105	Helical; (Potential).				iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		TCACGGGCTTCATGCTCCAGT	0.552													14	43					0	0	0.003163	0	0
INA	9118	broad.mit.edu	37	10	105048256	105048256	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:105048256C>T	uc001kws.2	+	3	1379	c.1330C>T	c.(1330-1332)CTA>TTA	p.L444L		NM_032727	NP_116116	Q16352	AINX_HUMAN	internexin neuronal intermediate filament	444	Tail.				cell differentiation|nervous system development	neurofilament	structural constituent of cytoskeleton			ovary(1)|breast(1)	2				Epithelial(162;3.45e-09)|all cancers(201;9.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		ATCCACTGGGCTATCACTTAA	0.473													34	77					0	0	0.005524	0	0
PDCD11	22984	broad.mit.edu	37	10	105184908	105184908	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:105184908C>T	uc001kwy.1	+	20	3018	c.2931C>T	c.(2929-2931)TCC>TCT	p.S977S		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	977					mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		AGGGTGTCTCCCTAACCCTCA	0.587													18	31					0	0	0.006122	0	0
COL17A1	1308	broad.mit.edu	37	10	105815715	105815715	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:105815715C>T	uc001kxr.2	-	18	1681	c.1512G>A	c.(1510-1512)AGG>AGA	p.R504R	COL17A1_uc010qqv.1_Silent_p.R488R	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	504	Extracellular (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TCCTCCTGATCCTCTCCAGCT	0.597													25	81					0	0	0.006320	0	0
C10orf79	80217	broad.mit.edu	37	10	105945794	105945794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:105945794C>T	uc001kxw.2	-	15	2064	c.1948G>A	c.(1948-1950)GGA>AGA	p.G650R	C10orf79_uc009xxq.2_5'UTR|C10orf79_uc001kxx.3_Missense_Mutation_p.G651R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	650											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		AGCCACAATCCATGTGAAGAC	0.373													41	49					0	0	0.003610	0	0
C10orf79	80217	broad.mit.edu	37	10	105953682	105953682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:105953682C>T	uc001kxw.2	-	11	1500	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	C10orf79_uc001kxx.3_Missense_Mutation_p.E463K|C10orf79_uc001kxy.1_Missense_Mutation_p.E463K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	462	WD 7.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TGAGGGGATTCCTTATCATAT	0.567													17	51					0	0	0.004007	0	0
CCDC147	159686	broad.mit.edu	37	10	106160635	106160635	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:106160635G>A	uc001kyh.2	+	13	2147	c.2013G>A	c.(2011-2013)AGG>AGA	p.R671R		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	671	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TTCTTGCCAGGAGTATGGCTA	0.473													30	26					0	0	0.002836	0	0
SORCS3	22986	broad.mit.edu	37	10	106865176	106865176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:106865176G>A	uc001kyi.1	+	7	1342	c.1115G>A	c.(1114-1116)AGG>AAG	p.R372K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	372	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCACCTGCAGGATCCAGGAA	0.478													23	29					0	0	0.002780	0	0
SORCS3	22986	broad.mit.edu	37	10	107005369	107005369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:107005369C>T	uc001kyi.1	+	21	3165	c.2938C>T	c.(2938-2940)CAG>TAG	p.Q980*	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	980	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CATCACAGTCCAGGTGGCTGC	0.468													22	47					0	0	0.003330	0	0
DUSP5	1847	broad.mit.edu	37	10	112266805	112266805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:112266805G>A	uc001kzd.2	+	3	896	c.641G>A	c.(640-642)CGG>CAG	p.R214Q		NM_004419	NP_004410	Q16690	DUS5_HUMAN	dual specificity phosphatase 5	214	Tyrosine-protein phosphatase.				endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1		Breast(234;0.0848)		Epithelial(162;0.000276)|all cancers(201;0.00465)|BRCA - Breast invasive adenocarcinoma(275;0.12)		GTCTCCCGACGGACCTCCGAG	0.552													77	89					0	0	0.003610	0	0
C10orf81	79949	broad.mit.edu	37	10	115526242	115526242	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:115526242A>T	uc001lat.1	+	2	645	c.83A>T	c.(82-84)CAG>CTG	p.Q28L	C10orf81_uc001lar.1_Missense_Mutation_p.Q34L|C10orf81_uc009xyc.1_5'UTR|C10orf81_uc001las.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	28	PH.									central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		CCACCTTCTCAGCTGTTCTCC	0.343													38	32					0	0	0.002852	0	0
C10orf81	79949	broad.mit.edu	37	10	115537180	115537180	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:115537180G>A	uc001lat.1	+	12	1741	c.1179G>A	c.(1177-1179)AGG>AGA	p.R393R	C10orf81_uc001lar.1_Intron|C10orf81_uc009xyc.1_Intron|C10orf81_uc001las.1_Intron|C10orf81_uc001lau.1_Intron	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	Error:Variant_position_missing_in_Q5SXH7_after_alignment										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		ACTCTTTCAGGATTCTTTCAT	0.428													3	6					0	0	0.000248	0	0
FAM160B1	57700	broad.mit.edu	37	10	116606030	116606030	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:116606030C>T	uc001lcb.2	+	10	1637	c.1302C>T	c.(1300-1302)ATC>ATT	p.I434I	FAM160B1_uc001lcc.2_Silent_p.I434I	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	434										lung(1)	1						TGTTTTTTATCCTTGGAGAAC	0.423													58	48					0	0	0.003610	0	0
C10orf82	143379	broad.mit.edu	37	10	118424405	118424405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:118424405C>T	uc001lcr.2	-	4	383	c.328G>A	c.(328-330)GGC>AGC	p.G110S	C10orf82_uc001lcs.1_3'UTR	NM_144661	NP_653262	Q8WW14	CJ082_HUMAN	hypothetical protein LOC143379	110											0				all cancers(201;0.0143)		GGCAGGTAGCCTGCCCAGCCA	0.488													44	56					0	0	0.003610	0	0
SLC18A2	6571	broad.mit.edu	37	10	119003599	119003599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:119003599C>T	uc001ldd.1	+	3	270	c.239C>T	c.(238-240)TCC>TTC	p.S80F	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	80	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	AGCATCTTCTCCTATTATGAT	0.507													11	38					0	0	0.000673	0	0
INPP5F	22876	broad.mit.edu	37	10	121551380	121551380	+	Splice_Site	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:121551380G>C	uc001leo.2	+	5	611	c.445_splice	c.e5-1	p.V149_splice	INPP5F_uc001len.3_Splice_Site_p.V149_splice	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F								phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		ATTTCTTATAGGTTAAGGAAA	0.343													14	22					0	0	0.001855	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122348878	122348878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:122348878C>T	uc001lev.1	+	7	1032	c.680C>T	c.(679-681)CCT>CTT	p.P227L	PPAPDC1A_uc009xzl.1_Missense_Mutation_p.P164L|PPAPDC1A_uc001lew.1_3'UTR|PPAPDC1A_uc001lex.1_Missense_Mutation_p.L77F|PPAPDC1A_uc001ley.1_Missense_Mutation_p.P106L	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	227					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		CAGCACTATCCTCCTCTGGCC	0.522													95	87					0	0	0.003610	0	0
TACC2	10579	broad.mit.edu	37	10	123845315	123845315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:123845315G>A	uc001lfv.2	+	4	3660	c.3300G>A	c.(3298-3300)ATG>ATA	p.M1100I	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.M1100I|TACC2_uc010qtv.1_Missense_Mutation_p.M1100I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1100						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AGCAGAAAATGGAGTGCTGGG	0.617													27	18					0	0	0.001786	0	0
DMBT1	1755	broad.mit.edu	37	10	124377614	124377615	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:124377614_124377615CC>TT	uc001lgk.1	+	38	4692_4693	c.4586_4587CC>TT	c.(4585-4587)TCC>TTT	p.S1529F	DMBT1_uc001lgl.1_Missense_Mutation_p.S1519F|DMBT1_uc001lgm.1_Missense_Mutation_p.S901F|DMBT1_uc009xzz.1_Missense_Mutation_p.S1529F|DMBT1_uc010qtx.1_Missense_Mutation_p.S380F|DMBT1_uc009yab.1_Missense_Mutation_p.S232F|DMBT1_uc009yac.1_5'Flank	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1529	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TACCAAGGCTCCTGGGGCACCG	0.584													86	279					0	0	0.004672	0	0
DMBT1	1755	broad.mit.edu	37	10	124380826	124380826	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:124380826G>A	uc001lgk.1	+	41	5257	c.5151G>A	c.(5149-5151)TGG>TGA	p.W1717*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.W1707*|DMBT1_uc001lgm.1_Nonsense_Mutation_p.W1089*|DMBT1_uc009xzz.1_Nonsense_Mutation_p.W1717*|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Nonsense_Mutation_p.W420*|DMBT1_uc009yac.1_Nonsense_Mutation_p.W31*	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1717	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCTACCTGTGGAGCTGCCCCC	0.622													55	55					0	0	0.003610	0	0
DMBT1	1755	broad.mit.edu	37	10	124402907	124402907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:124402907C>T	uc001lgk.1	+	53	7341	c.7235C>T	c.(7234-7236)CCT>CTT	p.P2412L	DMBT1_uc001lgl.1_Missense_Mutation_p.P2402L|DMBT1_uc001lgm.1_Missense_Mutation_p.P1784L|DMBT1_uc009xzz.1_Missense_Mutation_p.P2411L|DMBT1_uc010qtx.1_Missense_Mutation_p.P1132L|DMBT1_uc009yab.1_Missense_Mutation_p.P1115L|DMBT1_uc009yac.1_Missense_Mutation_p.P706L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2412					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GAAGAGGAGCCTCGGTAGGTG	0.612													3	12					0	0	0.004672	0	0
C10orf120	399814	broad.mit.edu	37	10	124458905	124458905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:124458905G>A	uc001lgn.2	-	2	232	c.200C>T	c.(199-201)TCA>TTA	p.S67L		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	67										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				CCGTGGGTCTGATCTGTAGAA	0.502													20	34					0	0	0.002780	0	0
C10orf137	26098	broad.mit.edu	37	10	127414400	127414400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:127414400C>T	uc001liq.1	+	6	1078	c.785C>T	c.(784-786)TCC>TTC	p.S262F	C10orf137_uc001lin.2_Missense_Mutation_p.S262F|C10orf137_uc001lio.1_Missense_Mutation_p.S262F|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	262					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CCCAGTGCTTCCAGTCAGGTT	0.398													11	32					0	0	0.000978	0	0
ADAM12	8038	broad.mit.edu	37	10	127731669	127731669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:127731669G>A	uc001ljk.2	-	18	2466	c.2053C>T	c.(2053-2055)CCC>TCC	p.P685S	ADAM12_uc010qul.1_Missense_Mutation_p.P636S|ADAM12_uc001ljm.2_Missense_Mutation_p.P685S|ADAM12_uc001ljn.2_Missense_Mutation_p.P682S|ADAM12_uc001ljl.3_Missense_Mutation_p.P682S	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	685	Extracellular (Potential).|EGF-like.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		TCACAGAAGGGAGGTGCCCAG	0.612													19	19					0	0	0.001882	0	0
ADAM12	8038	broad.mit.edu	37	10	127782640	127782640	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:127782640G>A	uc001ljk.2	-	11	1481	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	ADAM12_uc010qul.1_Silent_p.F307F|ADAM12_uc001ljm.2_Silent_p.F356F|ADAM12_uc001ljn.2_Silent_p.F353F|ADAM12_uc001ljl.3_Silent_p.F353F	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	356	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		GATTCATCCCGAAATTGTGGC	0.502													34	28					0	0	0.002445	0	0
C10orf90	118611	broad.mit.edu	37	10	128147757	128147757	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:128147757G>A	uc001ljq.2	-	6	1870	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	C10orf90_uc001ljp.2_Silent_p.F439F|C10orf90_uc010qum.1_Silent_p.F680F|C10orf90_uc001ljo.2_RNA	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	583										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		AGCGAGAAATGAACTGAGGCT	0.493													29	69					0	0	0.001786	0	0
DOCK1	1793	broad.mit.edu	37	10	129160391	129160391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:129160391C>T	uc001ljt.2	+	33	3348	c.3284C>T	c.(3283-3285)CCC>CTC	p.P1095L	DOCK1_uc010qun.1_Missense_Mutation_p.P1116L|DOCK1_uc009yaq.2_Missense_Mutation_p.P90L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1095					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ACATTAATTCCCGAGACGGAG	0.413													4	17					0	0	0.000602	0	0
MKI67	4288	broad.mit.edu	37	10	129902173	129902173	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:129902173T>C	uc001lke.2	-	13	8126	c.7931A>G	c.(7930-7932)AAA>AGA	p.K2644R	MKI67_uc001lkf.2_Missense_Mutation_p.K2284R|MKI67_uc009yav.1_Missense_Mutation_p.K2219R|MKI67_uc009yaw.1_Missense_Mutation_p.K1794R	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2644	14.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTTCAATACTTTGATGCCCTC	0.502													29	49					0	0	0.007291	0	0
MKI67	4288	broad.mit.edu	37	10	129911697	129911697	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:129911697G>A	uc001lke.2	-	8	1845	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I	MKI67_uc001lkf.2_Silent_p.I190I|MKI67_uc009yav.1_Silent_p.I125I|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	550					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TCACCTTGATGATTTTCTTCA	0.458													39	95					0	0	0.007835	0	0
C10orf93	255352	broad.mit.edu	37	10	134755113	134755113	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:134755113C>T	uc001llt.1	-	3	364	c.288G>A	c.(286-288)CCG>CCA	p.P96P	C10orf93_uc001llu.2_Silent_p.P96P	NM_173572	NP_775843	Q5SR76	CJ093_HUMAN	hypothetical protein LOC255352	96	TPR 1.						binding			pancreas(1)	1		all_cancers(35;1.8e-07)|all_epithelial(44;6.22e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Colorectal(31;0.119)|Glioma(114;0.172)|Melanoma(40;0.175)		Epithelial(32;4.28e-05)|OV - Ovarian serous cystadenocarcinoma(35;4.31e-05)|all cancers(32;5.02e-05)		CTGCCGACTTCGGGGCACACA	0.577													14	26					0	0	0.004007	0	0
KNDC1	85442	broad.mit.edu	37	10	135025051	135025051	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:135025051T>C	uc001llz.1	+	22	4035	c.4034T>C	c.(4033-4035)CTA>CCA	p.L1345P		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1345	N-terminal Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CTGGGGAAGCTAGAGGACTTC	0.657													10	61					0	0	0.002450	0	0
KNDC1	85442	broad.mit.edu	37	10	135032539	135032539	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:135032539G>A	uc001llz.1	+	28	4806	c.4805G>A	c.(4804-4806)TGG>TAG	p.W1602*		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1602	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TTTCAGGCCTGGAGAATTCTG	0.657													13	13					0	0	0.001855	0	0
VENTX	27287	broad.mit.edu	37	10	135053636	135053636	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:135053636C>T	uc010quy.1	+	3	614	c.603C>T	c.(601-603)TCC>TCT	p.S201S		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	201					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		CCCCTGGCTCCTTCTGGGGTC	0.677													8	14					0	0	0.003080	0	0
CYP2E1	1571	broad.mit.edu	37	10	135345187	135345187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:135345187C>T	uc001lnj.1	+	3	469	c.436C>T	c.(436-438)CGG>TGG	p.R146W	CYP2E1_uc001lnk.1_Missense_Mutation_p.R9W|CYP2E1_uc009ybl.1_Intron|CYP2E1_uc009ybm.1_5'UTR|CYP2E1_uc001lnl.1_5'UTR	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	146					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	CAATGAGAGCCGGATCCAGAG	0.567									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				28	29					0	0	0.006320	0	0
NLRP6	171389	broad.mit.edu	37	11	284554	284554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:284554G>A	uc010qvs.1	+	7	2452	c.2452G>A	c.(2452-2454)GAT>AAT	p.D818N	NLRP6_uc010qvt.1_Missense_Mutation_p.D817N	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	818	LRR 4.					cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		GACCACCCTGGATCTCAGCGG	0.677													7	15					0	0	0.001984	0	0
PHRF1	57661	broad.mit.edu	37	11	587401	587401	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:587401C>A	uc001lqe.2	+	4	488	c.357C>A	c.(355-357)GCC>GCA	p.A119A	PHRF1_uc010qwc.1_Silent_p.A119A|PHRF1_uc010qwd.1_Silent_p.A118A|PHRF1_uc010qwe.1_Silent_p.A115A	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	119	RING-type; degenerate.						RNA polymerase binding|zinc ion binding				0						GAGACCAGGCCGTGGGGACGC	0.552													22	20					1.66031e-10	2.41005e-10	0.003954	1	0
OSBPL5	114879	broad.mit.edu	37	11	3109521	3109521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:3109521G>A	uc001lxk.2	-	22	2712	c.2554C>T	c.(2554-2556)CCA>TCA	p.P852S	OSBPL5_uc010qxq.1_Missense_Mutation_p.P763S|OSBPL5_uc009ydw.2_Missense_Mutation_p.P784S|OSBPL5_uc001lxl.2_Missense_Mutation_p.P784S|OSBPL5_uc001lxj.2_Missense_Mutation_p.P306S	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	852					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		AGGAGGCCTGGGGTCGGTGCC	0.632													27	1					0	0	0.007291	0	0
OR52M1	119772	broad.mit.edu	37	11	4566714	4566714	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4566714C>T	uc010qyf.1	+	1	294	c.294C>T	c.(292-294)GCC>GCT	p.A98A		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCTGGACGCCTGCTTGGGCC	0.517													48	13					0	0	0.003610	0	0
OR52M1	119772	broad.mit.edu	37	11	4566771	4566771	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4566771C>T	uc010qyf.1	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCATCTTCCTTGCCATGG	0.522													40	16					0	0	0.002852	0	0
C11orf40	143501	broad.mit.edu	37	11	4598922	4598922	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4598922G>A	uc010qyg.1	-	1	129	c.129C>T	c.(127-129)ACC>ACT	p.T43T		NM_144663	NP_653264	Q8WZ69	CK040_HUMAN	hypothetical protein LOC143501	43										ovary(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;4.28e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		ttggcttcagggtcagcagct	0													44	13					0	0	0.007835	0	0
OR51E2	81285	broad.mit.edu	37	11	4703487	4703487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4703487G>A	uc001lzk.2	-	2	699	c.455C>T	c.(454-456)TCC>TTC	p.S152F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		AAAAAAGAGGGATCCGCGGAC	0.542													38	13					0	0	0.005524	0	0
OR51E2	81285	broad.mit.edu	37	11	4703801	4703801	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4703801G>A	uc001lzk.2	-	2	385	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CCGTCCTTACGATGAAGACCA	0.512													12	37					0	0	0.001368	0	0
OR51F1	256892	broad.mit.edu	37	11	4790304	4790304	+	Missense_Mutation	SNP	A	T	T	rs144710348		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4790304A>T	uc010qyl.1	-	1	844	c.844T>A	c.(844-846)TAC>AAC	p.Y282N		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	282						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AAAAGCAGGTATACATTAGCC	0.473													26	8					0	0	0.004656	0	0
OR52R1	119695	broad.mit.edu	37	11	4824861	4824861	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4824861G>A	uc010qym.1	-	1	987	c.987C>T	c.(985-987)GTC>GTT	p.V329V		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAGCCAAGATGACACAGATAT	0.473													43	16					0	0	0.002852	0	0
OR51S1	119692	broad.mit.edu	37	11	4869969	4869969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4869969G>A	uc010qyo.1	-	1	470	c.470C>T	c.(469-471)TCT>TTT	p.S157F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCATCGAAAAGAAATGGCCAG	0.552													56	15					0	0	0.003610	0	0
OR51A7	119687	broad.mit.edu	37	11	4928765	4928765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:4928765C>T	uc010qyq.1	+	1	166	c.166C>T	c.(166-168)CAT>TAT	p.H56Y		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	56	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCCTCGCTTCATGAGCCCAT	0.493													57	14					0	0	0.003610	0	0
OR51B4	79339	broad.mit.edu	37	11	5322912	5322912	+	Missense_Mutation	SNP	C	T	T	rs150447535	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:5322912C>T	uc010qza.1	-	1	265	c.265G>A	c.(265-267)GAG>AAG	p.E89K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGCAATCTCCCTCTGGTCT	0.502													37	7					0	0	0.006230	0	0
OR51I1	390063	broad.mit.edu	37	11	5462354	5462354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:5462354G>A	uc010qze.1	-	1	391	c.391C>T	c.(391-393)CCA>TCA	p.P131S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGCGTAATGGATAACAAATA	0.478													26	7					0	0	0.005443	0	0
FAM160A2	84067	broad.mit.edu	37	11	6235747	6235747	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:6235747G>A	uc001mcl.3	-	11	2810	c.2451C>T	c.(2449-2451)TTC>TTT	p.F817F	FAM160A2_uc001mck.3_Silent_p.F831F	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	817					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						GCAGTGCTGGGAAGTCCTCCT	0.557													65	15					0	0	0.003610	0	0
TPP1	1200	broad.mit.edu	37	11	6635861	6635861	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:6635861G>A	uc001mel.1	-	13	1669	c.1608C>T	c.(1606-1608)TTC>TTT	p.F536F	TAF10_uc001mej.1_5'Flank|TPP1_uc001mek.1_Silent_p.F293F	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	536					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		GACCAGAGCAGAAACCCTGGC	0.562													16	25					0	0	0.004990	0	0
NLRP14	338323	broad.mit.edu	37	11	7079535	7079535	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:7079535G>A	uc001mfb.1	+	8	2810	c.2487G>A	c.(2485-2487)GAG>GAA	p.E829E		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	829	LRR 4.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GTCTCACAGAGGCTGGCTGTG	0.443													35	12					0	0	0.006230	0	0
MRVI1	10335	broad.mit.edu	37	11	10602094	10602094	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:10602094C>T	uc010rcc.1	-	20	2789	c.2403G>A	c.(2401-2403)CTG>CTA	p.L801L	uc001miu.2_Intron|MRVI1_uc001miw.2_Silent_p.L792L|MRVI1_uc010rcb.1_Silent_p.L793L|MRVI1_uc009ygb.1_Silent_p.L486L|MRVI1_uc001mix.2_Silent_p.L486L|MRVI1_uc001miz.2_Silent_p.L710L|MRVI1_uc009ygc.1_Silent_p.L710L|MRVI1_uc010rcd.1_Silent_p.L595L|MRVI1_uc009ygd.1_Silent_p.L486L	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	774	Glu-rich.				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CCTCCTCCTTCAGGTCTTGAA	0.493													76	16					0	0	0.003610	0	0
MRVI1	10335	broad.mit.edu	37	11	10647561	10647561	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:10647561C>T	uc010rcc.1	-	9	1706	c.1320G>A	c.(1318-1320)CAG>CAA	p.Q440Q	MRVI1_uc001miw.2_Silent_p.Q431Q|MRVI1_uc010rcb.1_Silent_p.Q432Q|MRVI1_uc009ygb.1_Silent_p.Q125Q|MRVI1_uc001mix.2_Silent_p.Q125Q|MRVI1_uc001miz.2_Silent_p.Q349Q|MRVI1_uc009ygc.1_Silent_p.Q349Q|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_Silent_p.Q125Q|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	413					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GCACTTGTATCTGAAAGTCTT	0.587													9	0					0	0	0.004482	0	0
MRVI1	10335	broad.mit.edu	37	11	10655561	10655561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:10655561C>T	uc010rcc.1	-	3	669	c.283G>A	c.(283-285)GAT>AAT	p.D95N	MRVI1_uc001miw.2_Missense_Mutation_p.D86N|MRVI1_uc010rcb.1_Missense_Mutation_p.D86N|MRVI1_uc009ygb.1_Intron|MRVI1_uc001mix.2_Intron|MRVI1_uc001miz.2_Missense_Mutation_p.D4N|MRVI1_uc009ygc.1_Missense_Mutation_p.D4N|MRVI1_uc010rcd.1_Missense_Mutation_p.D95N|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	86					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GAAGTGGCATCCCCAGTCAGG	0.507													11	4					0	0	0.000978	0	0
MICAL2	9645	broad.mit.edu	37	11	12265648	12265648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:12265648C>T	uc001mjz.2	+	21	3061	c.2773C>T	c.(2773-2775)CCT>TCT	p.P925S	MICAL2_uc010rch.1_Intron|MICAL2_uc001mka.2_Missense_Mutation_p.P925S|MICAL2_uc010rci.1_Missense_Mutation_p.P925S|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Intron|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	925						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		CTCTGCTTCTCCTGCCAGAAA	0.498													113	34					0	0	0.003610	0	0
MICALCL	84953	broad.mit.edu	37	11	12313835	12313835	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:12313835C>T	uc001mkg.1	+	2	411	c.120C>T	c.(118-120)TCC>TCT	p.S40S		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	40	Ser-rich.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		ATGGTTCCTCCCCGCCTCAGG	0.378													22	6					0	0	0.002299	0	0
LOC494141	494141	broad.mit.edu	37	11	18231403	18231403	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18231403C>T	uc009yhh.2	+	2		c.427C>T			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AGAAGGTCCTCTTTCCACAAC	0.443													28	13					0	0	0.002096	0	0
LOC494141	494141	broad.mit.edu	37	11	18231744	18231744	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18231744C>T	uc009yhh.2	+	2		c.768C>T			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AGAGTTTTATCGAGGTTTGGT	0.443													28	11					0	0	0.002096	0	0
SAA2	6289	broad.mit.edu	37	11	18266935	18266935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18266935C>T	uc001mnz.3	-	4	395	c.358G>A	c.(358-360)GAG>AAG	p.E120K	SAA2_uc009yhj.2_Intron	NM_030754	NP_110381	P02735	SAA_HUMAN	serum amyloid A2 isoform a	120					acute-phase response|elevation of cytosolic calcium ion concentration|innate immune response|lymphocyte chemotaxis|macrophage chemotaxis|negative regulation of inflammatory response|neutrophil chemotaxis|platelet activation|positive regulation of cell adhesion|positive regulation of interleukin-1 secretion	high-density lipoprotein particle	G-protein-coupled receptor binding				0					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	CAGTATTTCTCAGGCAGGCCA	0.582													32	9					0	0	0.006999	0	0
HPS5	11234	broad.mit.edu	37	11	18303642	18303642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18303642C>T	uc001mod.1	-	22	3462	c.3184G>A	c.(3184-3186)GTG>ATG	p.V1062M	HPS5_uc001moe.1_Missense_Mutation_p.V948M|HPS5_uc001mof.1_Missense_Mutation_p.V948M	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	1062						cytosol				ovary(1)|pancreas(1)|skin(1)	3						ACATTCTCCACATTGATGGGG	0.542									Hermansky-Pudlak_syndrome				42	12					0	0	0.002222	0	0
GTF2H1	2965	broad.mit.edu	37	11	18382231	18382231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18382231C>T	uc001moi.2	+	15	2231	c.1537C>T	c.(1537-1539)CGG>TGG	p.R513W	GTF2H1_uc001moh.2_Missense_Mutation_p.R513W|GTF2H1_uc009yhm.2_Missense_Mutation_p.R397W|GTF2H1_uc001moj.2_Missense_Mutation_p.R201W	NM_001142307	NP_001135779	P32780	TF2H1_HUMAN	general transcription factor IIH, polypeptide 1,	513					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding				0						AGAAAAGATTCGGAGACAGTA	0.323								NER					63	16					0	0	0.003610	0	0
TSG101	7251	broad.mit.edu	37	11	18505616	18505616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18505616G>A	uc001mor.2	-	8	770	c.644C>T	c.(643-645)CCC>CTC	p.P215L		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	215					cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						ATCCCTACTGGGACCTGCAGG	0.498													65	12					0	0	0.003610	0	0
IGSF22	283284	broad.mit.edu	37	11	18735851	18735851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18735851C>T	uc009yht.2	-	13	1961	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	591										ovary(4)|large_intestine(2)|kidney(1)	7						GCTTCACTTTCCGTGCCCTTG	0.562													27	3					0	0	0.005443	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956242	18956242	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:18956242G>A	uc001mpg.2	-	1	308	c.90C>T	c.(88-90)CTC>CTT	p.L30L		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	30	Extracellular (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TCAGCACCGTGAGGCTCAAGG	0.552													74	24					0	0	0.003610	0	0
E2F8	79733	broad.mit.edu	37	11	19251064	19251064	+	Silent	SNP	G	A	A	rs139665641	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:19251064G>A	uc001mpm.2	-	10	2352	c.1830C>T	c.(1828-1830)CTC>CTT	p.L610L	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Silent_p.L610L	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	610					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CACTGTCCTCGAGCATGCTTG	0.507													86	23					0	0	0.003610	0	0
NELL1	4745	broad.mit.edu	37	11	20869269	20869269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:20869269C>T	uc001mqe.2	+	4	629	c.476C>T	c.(475-477)TCT>TTT	p.S159F	NELL1_uc001mqf.2_Missense_Mutation_p.S159F|NELL1_uc009yid.2_Missense_Mutation_p.S187F|NELL1_uc010rdo.1_Intron|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	159	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GTTAGCGCCTCTCATCTCCTG	0.463													8	4					0	0	0.003080	0	0
NELL1	4745	broad.mit.edu	37	11	20948935	20948935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:20948935C>T	uc001mqe.2	+	8	994	c.841C>T	c.(841-843)CGA>TGA	p.R281*	NELL1_uc001mqf.2_Nonsense_Mutation_p.R281*|NELL1_uc009yid.2_Nonsense_Mutation_p.R309*|NELL1_uc010rdo.1_Nonsense_Mutation_p.R224*|NELL1_uc010rdp.1_Nonsense_Mutation_p.R41*	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	281	VWFC 1.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						ACTGCTCTATCGAGATCAAGA	0.398													24	4					0	0	0.006320	0	0
ANO3	63982	broad.mit.edu	37	11	26463526	26463526	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:26463526C>T	uc001mqt.3	+	2	253	c.108C>T	c.(106-108)TCC>TCT	p.S36S	ANO3_uc010rdr.1_Silent_p.S20S	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	36	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTCGGAGATCCCTGCCTTGCC	0.438													86	24					0	0	0.003610	0	0
SLC5A12	159963	broad.mit.edu	37	11	26734223	26734223	+	Missense_Mutation	SNP	G	A	A	rs145373937		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:26734223G>A	uc001mra.2	-	2	683	c.370C>T	c.(370-372)CGC>TGC	p.R124C	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Missense_Mutation_p.R124C	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	124	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity	p.R124C(1)		ovary(1)|skin(1)	2						GCAGCATAGCGAACTGGTTTG	0.398													130	33					0	0	0.003610	0	0
FIBIN	387758	broad.mit.edu	37	11	27016309	27016309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:27016309C>T	uc001mrd.2	+	1	682	c.236C>T	c.(235-237)ACC>ATC	p.T79I		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	79						extracellular region|Golgi apparatus					0						CTGAGCCTCACCCTGCGGGAG	0.652													8	5					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	11	30928159	30928159	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:30928159G>A	uc001mss.1	-	8		c.1135C>T			uc009yjk.1_Silent_p.F792F|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		AAATACAGAGGAATGGAACCC	0.463													13	4					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	11	30946894	30946894	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:30946894C>T	uc001mss.1	-	1		c.62G>A			uc009yjk.1_Missense_Mutation_p.E435K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GCAAATATTTCCTTCCCCTTT	0.348													88	31					0	0	0.003610	0	0
ELF5	2001	broad.mit.edu	37	11	34502436	34502436	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:34502436C>T	uc001mvo.1	-	6	814	c.584G>A	c.(583-585)TGG>TAG	p.W195*	ELF5_uc001mvp.1_Nonsense_Mutation_p.W185*|ELF5_uc009ykd.1_Nonsense_Mutation_p.W90*	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	195	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				CCTATCTTCCCATTCCAGAAT	0.418													45	13					0	0	0.002852	0	0
PDHX	8050	broad.mit.edu	37	11	34991824	34991824	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:34991824C>T	uc001mvt.2	+	7	1481	c.955C>T	c.(955-957)CTG>TTG	p.L319L	PDHX_uc010rep.1_Silent_p.L304L|PDHX_uc010req.1_Intron	NM_003477	NP_003468	O00330	ODPX_HUMAN	pyruvate dehydrogenase complex, component X	319					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	acyltransferase activity			kidney(1)	1	all_epithelial(35;0.115)|Lung NSC(22;0.218)|all_lung(20;0.242)	all_hematologic(20;0.124)	STAD - Stomach adenocarcinoma(6;0.00113)			TAGGCAAGATCTGGTCAAAGG	0.303													16	6					0	0	0.001216	0	0
PAMR1	25891	broad.mit.edu	37	11	35515740	35515740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:35515740C>T	uc001mwg.2	-	2	197	c.154G>A	c.(154-156)GAG>AAG	p.E52K	PAMR1_uc001mwf.2_Missense_Mutation_p.E52K|PAMR1_uc010rew.1_Missense_Mutation_p.E52K|PAMR1_uc010rex.1_Missense_Mutation_p.E12K	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	52	Cys-rich.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						CAGACGCACTCAATCTGATCA	0.507													57	7					0	0	0.003610	0	0
LDLRAD3	143458	broad.mit.edu	37	11	36250735	36250735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:36250735C>T	uc001mwk.1	+	6	863	c.826C>T	c.(826-828)CCG>TCG	p.P276S	LDLRAD3_uc010rey.1_Missense_Mutation_p.P227S|LDLRAD3_uc010rez.1_Missense_Mutation_p.P155S|LDLRAD3_uc010rfa.1_RNA	NM_174902	NP_777562	Q86YD5	LRAD3_HUMAN	low density lipoprotein receptor class A domain	276	Poly-Pro.|Cytoplasmic (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1	all_lung(20;0.089)|Lung NSC(22;0.175)|all_epithelial(35;0.177)	all_hematologic(20;0.124)				CCTTCCTCCACCGCCCTACTC	0.617													105	26					0	0	0.003610	0	0
RAG1	5896	broad.mit.edu	37	11	36594953	36594953	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:36594953C>T	uc001mwu.3	+	2	223	c.99C>T	c.(97-99)TTC>TTT	p.F33F	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	33	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TTAAGCTGTTCCGGGTGAGAT	0.473									Familial_Hemophagocytic_Lymphohistiocytosis				35	14					0	0	0.002836	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137343	40137343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:40137343G>A	uc001mxa.1	-	2	2464	c.500C>T	c.(499-501)GCT>GTT	p.A167V	LRRC4C_uc001mxc.1_Missense_Mutation_p.A163V|LRRC4C_uc001mxd.1_Missense_Mutation_p.A163V|LRRC4C_uc001mxb.1_Missense_Mutation_p.A163V	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	167	LRR 4.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCTGTTAAAAGCATAAGAAGG	0.428													13	41					0	0	0.002450	0	0
SYT13	57586	broad.mit.edu	37	11	45274136	45274137	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:45274136_45274137GG>AA	uc001myq.2	-	4	807_808	c.681_682CC>TT	c.(679-684)CTCCCC>CTTTCC	p.P228S	SYT13_uc009yku.1_Missense_Mutation_p.P84S	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	228	Cytoplasmic (Potential).|C2 1.					transport vesicle				ovary(1)	1						TCCGCCAGGGGGAGCACCAGGC	0.678											OREG0020928	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	13					0	0	0.004672	0	0
F2	2147	broad.mit.edu	37	11	46747445	46747446	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:46747445_46747446CC>TT	uc001ndf.3	+	7	639_640	c.596_597CC>TT	c.(595-597)TCC>TTT	p.S199F	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	199		Cleavage; by thrombin.			activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	ACTCCACGCTCCGAAGGCTCCA	0.475													47	7					0	0	0.004672	0	0
OR4A47	403253	broad.mit.edu	37	11	48510680	48510680	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:48510680C>T	uc010rhx.1	+	1	336	c.336C>T	c.(334-336)CTC>CTT	p.L112L		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGGTCTTTCTCCTGTTGGTGA	0.458													44	11					0	0	0.003214	0	0
OR4A16	81327	broad.mit.edu	37	11	55110799	55110799	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55110799C>T	uc010rie.1	+	1	123	c.123C>T	c.(121-123)CTC>CTT	p.L41L		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TGGGAAACCTCCTCATTTGGG	0.433													37	32					0	0	0.006999	0	0
OR5D13	390142	broad.mit.edu	37	11	55541558	55541558	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55541558C>T	uc010ril.1	+	1	645	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GCCTAATTATCATTCTGACAT	0.438													22	71					0	0	0.002299	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653307	55653307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55653307G>A	uc010rip.1	+	2	495	c.403G>A	c.(403-405)GAA>AAA	p.E135K	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	135						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GGCTGCTGAGGAACGCCGGGT	0.478													20	16					0	0	0.002780	0	0
OR5W2	390148	broad.mit.edu	37	11	55681306	55681306	+	Silent	SNP	G	A	A	rs142170371		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55681306G>A	uc010rir.1	-	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F251F(1)		ovary(1)|skin(1)	2						GAGTTCCCTGGAAAATTGCAA	0.423													33	40					0	0	0.006999	0	0
OR8I2	120586	broad.mit.edu	37	11	55860905	55860905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55860905G>A	uc010rix.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					ACTGTTTTGGGAAACCTGGGA	0.383													102	71					0	0	0.003610	0	0
OR8H3	390152	broad.mit.edu	37	11	55890114	55890114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:55890114C>T	uc001nii.1	+	1	266	c.266C>T	c.(265-267)TCC>TTC	p.S89F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TTACTGACTTCCAACTATATT	0.428													141	149					0	0	0.003610	0	0
OR5R1	219479	broad.mit.edu	37	11	56184763	56184763	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:56184763T>G	uc010rji.1	-	1	946	c.946A>C	c.(946-948)ACA>CCA	p.T316P		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	316	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTTAAAAATGTTAATATCTGT	0.299													10	4					0	0	0.006214	0	0
OR5M11	219487	broad.mit.edu	37	11	56310114	56310114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:56310114G>A	uc010rjl.1	-	1	620	c.620C>T	c.(619-621)TCC>TTC	p.S207F		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GAGGGAGCTGGAGAGGTTGAA	0.498													8	30					0	0	0.003080	0	0
OR5M1	390168	broad.mit.edu	37	11	56380307	56380307	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:56380307C>T	uc001nja.1	-	1	672	c.672G>A	c.(670-672)GCG>GCA	p.A224A		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCCTGAAGATCGCTGCAAAAA	0.438													34	26					0	0	0.002222	0	0
CTNND1	1500	broad.mit.edu	37	11	57577603	57577603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:57577603C>T	uc001nmc.3	+	16	3029	c.2458C>T	c.(2458-2460)CGA>TGA	p.R820*	CTNND1_uc001nlh.1_Nonsense_Mutation_p.R820*|CTNND1_uc001nlu.3_Nonsense_Mutation_p.R713*|CTNND1_uc001nlt.3_Nonsense_Mutation_p.R713*|CTNND1_uc001nls.3_Nonsense_Mutation_p.R713*|CTNND1_uc001nlw.3_Nonsense_Mutation_p.R713*|CTNND1_uc001nmf.3_Nonsense_Mutation_p.R820*|CTNND1_uc001nmd.3_Nonsense_Mutation_p.R766*|CTNND1_uc001nlk.3_Nonsense_Mutation_p.R766*|CTNND1_uc001nme.3_Nonsense_Mutation_p.R814*|CTNND1_uc001nll.3_Nonsense_Mutation_p.R760*|CTNND1_uc001nmg.3_Nonsense_Mutation_p.R760*|CTNND1_uc001nlj.3_Nonsense_Mutation_p.R760*|CTNND1_uc001nlr.3_Nonsense_Mutation_p.R760*|CTNND1_uc001nlp.3_Nonsense_Mutation_p.R760*|CTNND1_uc001nlx.3_Nonsense_Mutation_p.R497*|CTNND1_uc001nlz.3_Nonsense_Mutation_p.R497*|CTNND1_uc009ymn.2_Nonsense_Mutation_p.R491*|CTNND1_uc001nlm.3_Nonsense_Mutation_p.R814*|CTNND1_uc001nly.3_Nonsense_Mutation_p.R491*|CTNND1_uc001nmb.3_Nonsense_Mutation_p.R491*|CTNND1_uc001nma.3_Nonsense_Mutation_p.R491*|CTNND1_uc001nmi.3_Nonsense_Mutation_p.R719*|CTNND1_uc001nmh.3_Nonsense_Mutation_p.R814*|CTNND1_uc001nlq.3_Nonsense_Mutation_p.R719*|CTNND1_uc001nln.3_Nonsense_Mutation_p.R814*|CTNND1_uc001nli.3_Nonsense_Mutation_p.R814*|CTNND1_uc001nlo.3_Nonsense_Mutation_p.R713*|CTNND1_uc001nlv.3_Nonsense_Mutation_p.R713*	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	820	ARM 10.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				AAAAGAAGTTCGAGCAGCAGC	0.398													12	37					0	0	0.001368	0	0
OR1S2	219958	broad.mit.edu	37	11	57970737	57970737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:57970737C>T	uc010rkb.1	-	1	917	c.917G>A	c.(916-918)AGG>AAG	p.R306K		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	306	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				ATCCTTATTCCTCAAGCTGTA	0.438													71	56					0	0	0.003610	0	0
OR5B3	441608	broad.mit.edu	37	11	58170031	58170031	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58170031G>A	uc010rkf.1	-	1	852	c.852C>T	c.(850-852)AAC>AAT	p.N284N		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGACCAGAGGGTTCAGCATGG	0.433													32	74					0	0	0.002836	0	0
OR5B3	441608	broad.mit.edu	37	11	58170330	58170330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58170330G>A	uc010rkf.1	-	1	553	c.553C>T	c.(553-555)CTC>TTC	p.L185F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAGCAAGAGAGAACCATGACT	0.398													24	27					0	0	0.002780	0	0
OR5B3	441608	broad.mit.edu	37	11	58170843	58170843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58170843C>T	uc010rkf.1	-	1	40	c.40G>A	c.(40-42)GGA>AGA	p.G14R		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTGGTTAGTCCTAGAAGAATG	0.388													33	45					0	0	0.005524	0	0
GLYATL2	219970	broad.mit.edu	37	11	58601919	58601919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58601919G>A	uc001nnd.3	-	6	999	c.868C>T	c.(868-870)CCC>TCC	p.P290S	GLYATL2_uc009ymq.2_Missense_Mutation_p.P290S	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	290						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TATTTCTTGGGGGTGCATTTC	0.363													10	21					0	0	0.000978	0	0
GLYATL2	219970	broad.mit.edu	37	11	58607014	58607014	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58607014G>A	uc001nnd.3	-	2	203	c.72C>T	c.(70-72)TCC>TCT	p.S24S	GLYATL2_uc009ymq.2_Silent_p.S24S	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	24						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	TTACCTTTATGGATTCAGGGA	0.438													15	50					0	0	0.006122	0	0
FAM111B	374393	broad.mit.edu	37	11	58893522	58893522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:58893522G>A	uc001nnl.2	+	4	2195	c.1952G>A	c.(1951-1953)GGC>GAC	p.G651D	FAM111B_uc001nnm.2_Missense_Mutation_p.G621D|FAM111B_uc010rko.1_Missense_Mutation_p.G621D	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	651							catalytic activity			ovary(2)	2						GGGTCCTCAGGCTCCCCAGTG	0.398													31	29					0	0	0.002096	0	0
OR5A1	219982	broad.mit.edu	37	11	59211432	59211432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:59211432G>A	uc001nnx.1	+	1	791	c.791G>A	c.(790-792)CGA>CAA	p.R264Q		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						GTGTACTTGCGACCCAGCTCC	0.527													90	55					0	0	0.003610	0	0
OR4D10	390197	broad.mit.edu	37	11	59245505	59245505	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:59245505C>T	uc001nnz.1	+	1	603	c.603C>T	c.(601-603)TCC>TCT	p.S201S		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAATGATTTCCAACAATGGAC	0.468													43	27					0	0	0.001951	0	0
OR4D11	219986	broad.mit.edu	37	11	59271107	59271107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:59271107C>T	uc001noa.1	+	1	59	c.59C>T	c.(58-60)TCC>TTC	p.S20F		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTACTCAATCCCAAGACCAG	0.388													16	43					0	0	0.003163	0	0
PATL1	219988	broad.mit.edu	37	11	59425053	59425053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:59425053G>A	uc001noe.3	-	5	714	c.571C>T	c.(571-573)CCC>TCC	p.P191S	PATL1_uc009yms.1_Missense_Mutation_p.P191S|PATL1_uc010rkw.1_Intron	NM_152716	NP_689929	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog	191	Pro-rich.|Region N; interaction with decapping machinery.				cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			ovary(1)	1						GTGCCTATGGGGACAGCTCTA	0.537													23	58					0	0	0.003954	0	0
MS4A6A	64231	broad.mit.edu	37	11	59947394	59947394	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:59947394G>A	uc001nor.2	-	3	430	c.192C>T	c.(190-192)ATC>ATT	p.I64I	MS4A6A_uc001noq.2_Silent_p.I64I|MS4A6A_uc001nos.3_Silent_p.I92I|MS4A6A_uc009ymv.2_Silent_p.I64I|MS4A6A_uc001not.2_Silent_p.I64I|MS4A6A_uc010rla.1_Silent_p.I92I|MS4A6A_uc010rlb.1_Intron	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	64	Helical; (Potential).					integral to membrane	receptor activity				0						ATGCCAAAATGATCCCCAAGC	0.433													4	20					0	0	0.000602	0	0
MS4A14	84689	broad.mit.edu	37	11	60184081	60184081	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:60184081C>T	uc001npj.2	+	5	2205	c.1640C>T	c.(1639-1641)TCC>TTC	p.S547F	MS4A14_uc001npi.2_Missense_Mutation_p.S435F|MS4A14_uc001npn.2_Missense_Mutation_p.S285F|MS4A14_uc001npk.2_Missense_Mutation_p.S530F|MS4A14_uc001npl.2_Missense_Mutation_p.S285F|MS4A14_uc001npm.2_Missense_Mutation_p.S285F	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	547	Gln-rich.					integral to membrane	receptor activity			breast(1)	1						AAGAGGCACTCCGTAGATAAG	0.453													27	20					0	0	0.001512	0	0
MS4A1	931	broad.mit.edu	37	11	60233401	60233401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:60233401G>A	uc001npp.2	+	6	760	c.344G>A	c.(343-345)GGA>GAA	p.G115E	MS4A1_uc001npq.2_Missense_Mutation_p.G115E|MS4A1_uc009yna.2_Missense_Mutation_p.G115E|MS4A1_uc009ymz.2_Missense_Mutation_p.G115E|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	115					B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	CAGGTCAAAGGAAAAATGATA	0.338													22	29					0	0	0.002299	0	0
TMEM132A	54972	broad.mit.edu	37	11	60704361	60704361	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:60704361G>A	uc001nqj.2	+	11	3247	c.3054G>A	c.(3052-3054)AGG>AGA	p.R1018R	TMEM132A_uc001nqi.2_Silent_p.R1019R|TMEM132A_uc001nqm.2_Silent_p.R228R	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	1018	Cytoplasmic (Potential).|Confers cellular localization similar to full-length form (By similarity).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ACATGGAGAGGATCCGGGGCA	0.652													20	8					0	0	0.001523	0	0
VWCE	220001	broad.mit.edu	37	11	61058815	61058815	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:61058815G>A	uc001nra.2	-	3	495	c.216C>T	c.(214-216)TCC>TCT	p.S72S	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	72	EGF-like 1.					extracellular region	calcium ion binding			ovary(1)	1						CACAGCCGAAGGAGCAGAGGG	0.642													13	10					0	0	0.001855	0	0
DDB1	1642	broad.mit.edu	37	11	61081116	61081116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:61081116G>A	uc001nrc.3	-	16	2150	c.1924C>T	c.(1924-1926)CGT>TGT	p.R642C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R642C	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	642	Interaction with CDT1.|Interaction with CUL4A.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						GAAAGAGAACGAAAAGTCCTC	0.473								NER					17	18					0	0	0.004007	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61405054	61405054	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:61405054C>T	uc001nrz.1	+	5	1658	c.903C>T	c.(901-903)GCC>GCT	p.A301A		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						AGGATGAAGCCAAGGAAGAGT	0.403													15	16					0	0	0.004990	0	0
DAGLA	747	broad.mit.edu	37	11	61504750	61504750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:61504750C>T	uc001nsa.2	+	14	1579	c.1468C>T	c.(1468-1470)CCG>TCG	p.P490S		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	490	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CCCACAGTATCCGACCCTCAA	0.652													69	183					0	0	0.003610	0	0
INCENP	3619	broad.mit.edu	37	11	61906201	61906202	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:61906201_61906202CC>AT	uc001nsw.1	+	6	1334_1335	c.1132_1133CC>AT	c.(1132-1134)CCC>ATC	p.P378I	INCENP_uc009ynw.1_Missense_Mutation_p.P378I|INCENP_uc001nsx.1_Missense_Mutation_p.P378I	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	378					chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						GCAGAAGGAACCCCCCGAGGAG	0.629													10	28					0	0	0.004672	0	0
AHNAK	79026	broad.mit.edu	37	11	62288237	62288237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62288237G>A	uc001ntl.2	-	5	13952	c.13652C>T	c.(13651-13653)CCC>CTC	p.P4551L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4551					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATCCACTTTGGGACCTTTCAG	0.423													22	41					0	0	0.001523	0	0
AHNAK	79026	broad.mit.edu	37	11	62291528	62291529	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62291528_62291529GG>AC	uc001ntl.2	-	5	10660_10661	c.10360_10361CC>GT	c.(10360-10362)CCA>GTA	p.P3454V	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	3454					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				ATTGACTTCTGGTGCCTTAATA	0.416													19	85					0	0	0.004672	0	0
EML3	256364	broad.mit.edu	37	11	62373192	62373192	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62373192G>T	uc001ntu.1	-	15	2144	c.1836C>A	c.(1834-1836)TTC>TTA	p.F612L	EML3_uc001ntr.1_Missense_Mutation_p.F584L|EML3_uc001nts.1_Missense_Mutation_p.F584L|EML3_uc001ntt.1_Missense_Mutation_p.F496L|EML3_uc010rly.1_Missense_Mutation_p.F612L	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	612	WD 6.					cytoplasm|microtubule	protein binding			ovary(1)	1						CGCAGGTGAGGAAGCGGTTCT	0.642													12	21					6.40141e-05	9.23404e-05	0.000978	1	0
EML3	256364	broad.mit.edu	37	11	62376050	62376050	+	Silent	SNP	G	A	A	rs138198368		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62376050G>A	uc001ntu.1	-	9	1382	c.1074C>T	c.(1072-1074)TTC>TTT	p.F358F	EML3_uc001ntr.1_Silent_p.F330F|EML3_uc001nts.1_Silent_p.F330F|EML3_uc001ntt.1_Silent_p.F242F|EML3_uc010rly.1_Silent_p.F358F|EML3_uc009yny.1_Silent_p.F141F	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	358	WD 2.					cytoplasm|microtubule	protein binding			ovary(1)	1						CACCCCGCTCGAAGGCCCCCA	0.597													111	95					0	0	0.003610	0	0
CHRM1	1128	broad.mit.edu	37	11	62677552	62677552	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62677552G>A	uc001nwi.2	-	2	1422	c.1021C>T	c.(1021-1023)CAG>TAG	p.Q341*		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	341	Cytoplasmic (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	CGGGGCTTCTGGCCCTTGCCA	0.637													25	17					0	0	0.005443	0	0
SLC22A6	9356	broad.mit.edu	37	11	62749403	62749403	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:62749403G>A	uc001nwk.2	-	4	1015	c.708C>T	c.(706-708)CTC>CTT	p.L236L	SLC22A6_uc001nwl.2_Silent_p.L236L|SLC22A6_uc001nwj.2_Silent_p.L236L|SLC22A6_uc001nwm.2_Silent_p.L236L	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	236	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CACCAGCCAGGAGGAACTGGC	0.592													15	15					0	0	0.002450	0	0
SLC22A9	114571	broad.mit.edu	37	11	63174110	63174110	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63174110C>T	uc001nww.2	+	7	1483	c.1215C>T	c.(1213-1215)AAC>AAT	p.N405N	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	405	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						AATACATGAACCGTCGAGCAA	0.493													37	22					0	0	0.003271	0	0
SLC22A9	114571	broad.mit.edu	37	11	63175680	63175680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63175680C>T	uc001nww.2	+	8	1653	c.1385C>T	c.(1384-1386)CCC>CTC	p.P462L	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	462	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GAAGTAATTCCCACCATAATC	0.458													7	43					0	0	0.004482	0	0
LGALS12	85329	broad.mit.edu	37	11	63273900	63273900	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63273900G>A	uc001nxa.2	+	1	377	c.36G>A	c.(34-36)ACG>ACA	p.T12T	LGALS12_uc001nxb.2_Silent_p.T12T|LGALS12_uc001nxc.2_Silent_p.T12T|LGALS12_uc001nxd.2_5'Flank|LGALS12_uc001nxe.2_5'Flank|LGALS12_uc009yot.2_5'Flank	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	12					apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CTCCTGGAACGAGGATCTACA	0.572													20	47					0	0	0.001882	0	0
LGALS12	85329	broad.mit.edu	37	11	63283740	63283740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63283740G>A	uc001nxa.2	+	9	1227	c.886G>A	c.(886-888)GGA>AGA	p.G296R	LGALS12_uc001nxb.2_Missense_Mutation_p.G287R|LGALS12_uc001nxc.2_Missense_Mutation_p.G297R|LGALS12_uc001nxd.2_Missense_Mutation_p.G235R|LGALS12_uc001nxe.2_Missense_Mutation_p.G226R|LGALS12_uc009yot.2_Missense_Mutation_p.G256R	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	296	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GTTCCAGGAGGGAGGGCTGAA	0.632													15	25					0	0	0.004990	0	0
PLA2G16	11145	broad.mit.edu	37	11	63357705	63357705	+	Missense_Mutation	SNP	G	A	A	rs141685584		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63357705G>A	uc001nxh.2	-	3	677	c.254C>T	c.(253-255)TCG>TTG	p.S85L	PLA2G16_uc001nxi.2_Missense_Mutation_p.S97L|PLA2G16_uc009you.1_Missense_Mutation_p.S85L	NM_007069	NP_009000	P53816	PAG16_HUMAN	HRAS-like suppressor 3	85					lipid catabolic process	integral to membrane|perinuclear region of cytoplasm	hydrolase activity|protein binding			ovary(1)	1						GGGCAGCGGCGAGTACTTGTC	0.547													43	25					0	0	0.002852	0	0
MACROD1	28992	broad.mit.edu	37	11	63918757	63918757	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:63918757G>A	uc001nyh.2	-	3	590	c.471C>T	c.(469-471)CTC>CTT	p.L157L		NM_014067	NP_054786	Q9BQ69	MACD1_HUMAN	MACRO domain containing 1	157	Macro.										0						TGTCGCTGCGGAGCAGGGAGA	0.597													13	34					0	0	0.001368	0	0
GPR137	56834	broad.mit.edu	37	11	64056833	64056833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64056833C>T	uc001nzg.1	+	8	1558	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L	GPR137_uc010rni.1_Missense_Mutation_p.P475L|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	417	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						GTGCCGTCCCCCTAGGATGGG	0.652													33	33					0	0	0.003271	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111765	64111765	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64111765G>A	uc001nzy.2	+	14	1796	c.1752G>A	c.(1750-1752)GAG>GAA	p.E584E	CCDC88B_uc009ypo.1_Silent_p.E581E|CCDC88B_uc001nzz.1_Silent_p.E233E	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	584					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						CTCCTGTGGAGACACAGGAGT	0.642													19	25					0	0	0.007413	0	0
CCDC88B	283234	broad.mit.edu	37	11	64121212	64121212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64121212G>A	uc001nzy.2	+	23	3903	c.3859G>A	c.(3859-3861)GAG>AAG	p.E1287K	CCDC88B_uc009ypo.1_Missense_Mutation_p.E1284K|CCDC88B_uc001oaa.2_Missense_Mutation_p.E439K|CCDC88B_uc001oab.1_Missense_Mutation_p.E118K|CCDC88B_uc001oac.2_5'UTR	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	1287	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						CCTGCGCCGCGAGAAGCAGAA	0.642													42	111					0	0	0.002852	0	0
SLC22A12	116085	broad.mit.edu	37	11	64366040	64366040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64366040G>A	uc001oam.1	+	5	1630	c.883G>A	c.(883-885)GGC>AGC	p.G295S	SLC22A12_uc009ypr.1_Missense_Mutation_p.G320S|SLC22A12_uc001oal.1_Missense_Mutation_p.G74S|SLC22A12_uc009yps.1_Missense_Mutation_p.G261S|SLC22A12_uc001oan.1_Missense_Mutation_p.G187S|SLC22A12_uc009ypt.2_Missense_Mutation_p.G113S	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	295					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GCTGGATTGGGGCCTGCAGGA	0.657													5	5					0	0	0.001168	0	0
NRXN2	9379	broad.mit.edu	37	11	64375221	64375221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64375221G>A	uc001oap.2	-	8	1959	c.1448C>T	c.(1447-1449)CCC>CTC	p.P483L	NRXN2_uc001oar.2_Missense_Mutation_p.P1529L|NRXN2_uc001oas.2_Missense_Mutation_p.P1459L|NRXN2_uc001oao.2_Missense_Mutation_p.P169L|NRXN2_uc001oaq.2_Missense_Mutation_p.P1196L	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	483	Extracellular (Potential).				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GGGTTTGCGGGGTGACAGGAG	0.711													3	1					0	0	0.004672	0	0
NRXN2	9379	broad.mit.edu	37	11	64402788	64402788	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64402788C>T	uc001oap.2	-	3	913	c.402G>A	c.(400-402)CGG>CGA	p.R134R	NRXN2_uc001oar.2_Silent_p.R1180R|NRXN2_uc001oas.2_Silent_p.R1140R|NRXN2_uc001oaq.2_Silent_p.R847R	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	134	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CGCTGTCCACCCGCACCAGCA	0.637													17	23					0	0	0.004990	0	0
ATG2A	23130	broad.mit.edu	37	11	64669577	64669578	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64669577_64669578GG>AA	uc001obx.2	-	29	4090_4091	c.3975_3976CC>TT	c.(3973-3978)CCCCCT>CCTTCT	p.P1326S	ATG2A_uc001obw.2_Missense_Mutation_p.P91S	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1326							protein binding			ovary(1)|central_nervous_system(1)	2						GGTGGTGAAGGGGGTGGGGCCC	0.624													21	72					0	0	0.004672	0	0
ATG2A	23130	broad.mit.edu	37	11	64673043	64673043	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64673043G>A	uc001obx.2	-	24	3571	c.3456C>T	c.(3454-3456)TTC>TTT	p.F1152F	ATG2A_uc001obw.2_5'Flank	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1152							protein binding			ovary(1)|central_nervous_system(1)	2						ACCTGAGCAGGAAGGTGGAGG	0.622													7	7					0	0	0.003080	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64699222	64699222	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64699222T>G	uc001oby.2	+	11	1583	c.998T>G	c.(997-999)GTG>GGG	p.V333G	PPP2R5B_uc001obz.2_Missense_Mutation_p.V333G	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	333					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						CCCACCCAGGTGATGTTTCTG	0.567													16	36					0	0	0.006122	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825463	64825463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:64825463G>A	uc001ocn.2	-	3	380	c.364C>T	c.(364-366)CCC>TCC	p.P122S	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	122	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						CCCCCAGTGGGGCCCACTGTT	0.652													23	68					0	0	0.004656	0	0
LTBP3	4054	broad.mit.edu	37	11	65313968	65313968	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65313968G>A	uc001oej.2	-	16	2567	c.2298C>T	c.(2296-2298)TTC>TTT	p.F766F	LTBP3_uc001oef.2_5'Flank|LTBP3_uc001oeg.2_5'UTR|LTBP3_uc001oeh.2_Silent_p.F196F|LTBP3_uc010roi.1_Silent_p.F649F|LTBP3_uc001oei.2_Silent_p.F766F|LTBP3_uc010roj.1_Silent_p.F467F|LTBP3_uc010rok.1_Silent_p.F677F	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	766	Cys-rich.|EGF-like 6; calcium-binding (Potential).					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						AGGTGCAGCGGAAGGAGCCCG	0.746													16	8					0	0	0.006122	0	0
LTBP3	4054	broad.mit.edu	37	11	65315422	65315422	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65315422G>A	uc001oej.2	-	12	2084	c.1815C>T	c.(1813-1815)TAC>TAT	p.Y605Y	LTBP3_uc001oeg.2_5'Flank|LTBP3_uc001oeh.2_Silent_p.Y35Y|LTBP3_uc010roi.1_Silent_p.Y488Y|LTBP3_uc001oei.2_Silent_p.Y605Y|LTBP3_uc010roj.1_Silent_p.Y306Y|LTBP3_uc010rok.1_Silent_p.Y516Y	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	605	Cys-rich.|EGF-like 3.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						GATGTGACCGGTAGCCGGGGT	0.667													25	16					0	0	0.005443	0	0
PCNXL3	399909	broad.mit.edu	37	11	65385893	65385893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65385893C>T	uc001oey.2	+	6	1060	c.1060C>T	c.(1060-1062)CCC>TCC	p.P354S		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	354						integral to membrane					0						CGCCGGGGTCCCCTCAGATGA	0.692													3	9					0	0	0.004672	0	0
MUS81	80198	broad.mit.edu	37	11	65631084	65631085	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65631084_65631085CC>TT	uc001ofv.3	+	9	1206_1207	c.853_854CC>TT	c.(853-855)CCG>TTG	p.P285L	MUS81_uc001ofw.3_RNA|MUS81_uc001ofx.3_5'UTR	NM_025128	NP_079404	Q96NY9	MUS81_HUMAN	MUS81 endonuclease homolog	285	ERCC4.				DNA recombination|DNA repair	nucleolus	3'-flap endonuclease activity|DNA binding|metal ion binding|protein binding				0				READ - Rectum adenocarcinoma(159;0.166)		CGGGCACAGGCCGGAGCTGCTC	0.629								Homologous_recombination					11	3					0	0	0.004672	0	0
SART1	9092	broad.mit.edu	37	11	65734964	65734964	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65734964C>T	uc001ogl.2	+	11	1428	c.1336C>T	c.(1336-1338)CGA>TGA	p.R446*		NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	446					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						GGGTCGCCGCCGAGTGTCCGA	0.677													16	26					0	0	0.003163	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793363	65793363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:65793363G>A	uc001ogt.2	-	1	626	c.488C>T	c.(487-489)TCC>TTC	p.S163F		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	163	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CACGCCAGAGGAATAGTGGGA	0.572													10	30					0	0	0.001368	0	0
CTSF	8722	broad.mit.edu	37	11	66335051	66335051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:66335051G>A	uc001oip.2	-	3	485	c.395C>T	c.(394-396)CCA>CTA	p.P132L		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	132					proteolysis	lysosome	cysteine-type endopeptidase activity				0						CCCAGCACCTGGAACCTTGGT	0.557													30	76					0	0	0.002096	0	0
RBM14	10432	broad.mit.edu	37	11	66392846	66392846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:66392846C>T	uc001oit.2	+	2	1638	c.1499C>T	c.(1498-1500)GCC>GTC	p.A500V	RBM14_uc009yrh.2_Intron|RBM14_uc009yri.2_Intron|RBM4_uc009yrj.2_Intron|RBM4_uc009yrk.2_Intron	NM_006328	NP_006319	Q96PK6	RBM14_HUMAN	RNA binding motif protein 14	500	Ala-rich.				DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|histone deacetylation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus	mediator complex|ribonucleoprotein complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|protein binding, bridging|RNA binding|RNA polymerase II transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						TCCTATGGTGCCGCAGCAGCC	0.617													8	62					0	0	0.004482	0	0
SPTBN2	6712	broad.mit.edu	37	11	66468095	66468095	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:66468095G>A	uc001ojd.2	-	16	3547	c.3475C>T	c.(3475-3477)CGA>TGA	p.R1159*		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1159	Spectrin 8.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TCCCACATTCGGCCCAGCTCC	0.692													33	21					0	0	0.003755	0	0
SPTBN2	6712	broad.mit.edu	37	11	66472485	66472485	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:66472485G>A	uc001ojd.2	-	14	2334	c.2262C>T	c.(2260-2262)GCC>GCT	p.A754A		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	754	Spectrin 5.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CGTTTGCATCGGCCTGGAACT	0.677													22	9					0	0	0.001523	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67177183	67177183	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:67177183G>A	uc001ola.2	+	10	1328	c.1299G>A	c.(1297-1299)AGG>AGA	p.R433R	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_3'UTR|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	433	Interaction with calcineurin.					intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGCCCCCCAGGCCCCAACGAG	0.682													8	31					0	0	0.000673	0	0
CABP4	57010	broad.mit.edu	37	11	67223165	67223165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:67223165G>A	uc001olo.2	+	1	348	c.271G>A	c.(271-273)GCC>ACC	p.A91T	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_Intron	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	91					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCCTGGGCCGGCCTCTTCTCG	0.682													7	4					0	0	0.003080	0	0
TBX10	347853	broad.mit.edu	37	11	67402522	67402522	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:67402522G>A	uc001omp.2	-	2	308	c.220C>T	c.(220-222)CTG>TTG	p.L74L		NM_005995	NP_005986	O75333	TBX10_HUMAN	T-box 10	74	T-box.				anatomical structure morphogenesis|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						TCCTCCCACAGAGGCTTCATC	0.642													15	17					0	0	0.004007	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433642	67433642	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:67433642C>T	uc001omr.2	-	6	709	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q	ALDH3B2_uc001oms.2_Silent_p.Q90Q|ALDH3B2_uc009ysa.1_Silent_p.Q90Q	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	90					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	GCCCTGTCTCCTGGGGTCCGC	0.657													27	63					0	0	0.002445	0	0
NDUFS8	4728	broad.mit.edu	37	11	67800476	67800476	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:67800476C>T	uc001onc.2	+	4	303	c.196C>T	c.(196-198)CGA>TGA	p.R66*	NDUFS8_uc010rpz.1_Nonsense_Mutation_p.R66*|NDUFS8_uc009ysb.1_Intron|NDUFS8_uc009ysc.1_Nonsense_Mutation_p.R66*	NM_002496	NP_002487	O00217	NDUS8_HUMAN	NADH dehydrogenase ubiquinone Fe-S 8 precursor	66					mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	TGAGCTCTTCCGAGGTGCGTC	0.652													28	26					0	0	0.007291	0	0
LRP5	4041	broad.mit.edu	37	11	68154023	68154023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:68154023G>A	uc001ont.2	+	6	1330	c.1255G>A	c.(1255-1257)GAT>AAT	p.D419N	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	419	LDL-receptor class B 6.|Beta-propeller 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CAACGACCCCGATGGCATCGC	0.652													17	42					0	0	0.007413	0	0
MRGPRD	116512	broad.mit.edu	37	11	68748298	68748298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:68748298C>T	uc010rqf.1	-	1	158	c.158G>A	c.(157-159)GGC>GAC	p.G53D		NM_198923	NP_944605	Q8TDS7	MRGRD_HUMAN	MAS-related GPR, member D	53	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(1)	1			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CATTCGAAAGCCCAGCAGCCA	0.602													14	29					0	0	0.002450	0	0
SHANK2	22941	broad.mit.edu	37	11	70333233	70333233	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:70333233G>A	uc001oqc.2	-	21	3243	c.3165C>T	c.(3163-3165)ATC>ATT	p.I1055I	SHANK2_uc010rqn.1_Silent_p.I467I|SHANK2_uc001opz.2_Silent_p.I460I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	676					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCTGGGGGTCGATCTCCATGC	0.692													15	45					0	0	0.003163	0	0
NUMA1	4926	broad.mit.edu	37	11	71724483	71724483	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:71724483G>A	uc001orl.1	-	15	4238	c.4066C>T	c.(4066-4068)CTG>TTG	p.L1356L	NUMA1_uc009ysw.1_Silent_p.L919L|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Silent_p.L1356L|NUMA1_uc001orn.2_Silent_p.L919L|NUMA1_uc009ysx.1_Silent_p.L1356L|NUMA1_uc001oro.1_Silent_p.L1356L	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1356	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCACTCACCAGGGCCTGTGTG	0.632			T	RARA	APL								12	25					0	0	0.000978	0	0
ARAP1	116985	broad.mit.edu	37	11	72423533	72423533	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:72423533G>A	uc001osu.2	-	6	1017	c.828C>T	c.(826-828)GAC>GAT	p.D276D	ARAP1_uc001osv.2_Silent_p.D276D|ARAP1_uc001osr.2_Silent_p.D36D|ARAP1_uc001oss.2_Silent_p.D31D|ARAP1_uc009yth.2_Silent_p.D31D|ARAP1_uc010rre.1_Silent_p.D31D	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	276					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CCCCTTGGTCGTCCCCAGACA	0.682													86	195					0	0	0.003610	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73075268	73075268	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:73075268C>T	uc001otu.2	+	17	5406	c.5385C>T	c.(5383-5385)GTC>GTT	p.V1795V		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1795					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						AGCTTGTGGTCTACCAAAGGG	0.507													50	134					0	0	0.003610	0	0
PAAF1	80227	broad.mit.edu	37	11	73627595	73627595	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:73627595C>T	uc001ouk.1	+	9	859	c.825C>T	c.(823-825)TTC>TTT	p.F275F	PAAF1_uc001oul.1_Silent_p.F258F|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Silent_p.F258F|PAAF1_uc001oun.1_5'Flank	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	275					interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					CCCAGGTGTTCCTCTTTATTG	0.383													13	51					0	0	0.002450	0	0
C2CD3	26005	broad.mit.edu	37	11	73785570	73785570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:73785570G>A	uc001ouu.2	-	24	4906	c.4679C>T	c.(4678-4680)TCT>TTT	p.S1560F	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1560						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TGAGGAAAGAGAGGAAAGAAC	0.507													9	15					0	0	0.000673	0	0
SPCS2	9789	broad.mit.edu	37	11	74676882	74676882	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:74676882C>T	uc001ovu.2	+	3	312	c.273C>T	c.(271-273)TCC>TCT	p.S91S		NM_014752	NP_055567	Q15005	SPCS2_HUMAN	signal peptidase complex subunit 2 homolog	91	Helical; (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	integral to membrane|microsome|signal peptidase complex	peptidase activity			breast(1)	1						GTACAATCTCCTGTTTCTTTG	0.393													37	93					0	0	0.007835	0	0
C11orf30	56946	broad.mit.edu	37	11	76183643	76183643	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:76183643C>T	uc001oxl.2	+	8	1010	c.867C>T	c.(865-867)TTC>TTT	p.F289F	C11orf30_uc009yuj.1_Silent_p.F304F|C11orf30_uc010rsa.1_Silent_p.F239F|C11orf30_uc001oxm.2_Silent_p.F290F|C11orf30_uc010rsb.1_Silent_p.F304F|C11orf30_uc010rsc.1_Silent_p.F304F|C11orf30_uc001oxn.2_Silent_p.F290F|C11orf30_uc010rsd.1_Silent_p.F303F	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	289	Interaction with BRCA2.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						GCTCAACCTTCGTGCCCAACA	0.388													18	48					0	0	0.001523	0	0
LRRC32	2615	broad.mit.edu	37	11	76371921	76371921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:76371921G>A	uc001oxq.3	-	3	959	c.716C>T	c.(715-717)CCC>CTC	p.P239L	LRRC32_uc001oxr.3_Missense_Mutation_p.P239L|LRRC32_uc010rsf.1_Missense_Mutation_p.P239L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	239	LRR 8.|Extracellular (Potential).					integral to plasma membrane					0						CTCAGCCTGGGGCTGGGAGGC	0.607													27	24					0	0	0.007291	0	0
RSF1	51773	broad.mit.edu	37	11	77402212	77402212	+	Silent	SNP	G	A	A	rs139840785		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:77402212G>A	uc001oyn.2	-	9	3012	c.2892C>T	c.(2890-2892)GCC>GCT	p.A964A	RSF1_uc001oym.2_Silent_p.A712A	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	964	Potential.				CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			ACCTTCGTTCGGCACGCTCTT	0.338													26	73					0	0	0.006320	0	0
PCF11	51585	broad.mit.edu	37	11	82880377	82880377	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:82880377C>T	uc001ozx.3	+	8	3345	c.3000C>T	c.(2998-3000)GTC>GTT	p.V1000V	PCF11_uc010rsu.1_Silent_p.V1131V	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1000	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GCCCTTTAGTCCAACAAGGAG	0.502													14	30					0	0	0.004007	0	0
DLG2	1740	broad.mit.edu	37	11	83183773	83183773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:83183773C>T	uc001paj.2	-	18	2329	c.2026G>A	c.(2026-2028)GAA>AAA	p.E676K	DLG2_uc001pai.2_Missense_Mutation_p.E555K|DLG2_uc010rsy.1_Missense_Mutation_p.E625K|DLG2_uc010rsz.1_Missense_Mutation_p.E672K|DLG2_uc010rta.1_Missense_Mutation_p.E658K|DLG2_uc001pak.2_Missense_Mutation_p.E781K|DLG2_uc010rtb.1_Missense_Mutation_p.E643K|DLG2_uc010rsw.1_Missense_Mutation_p.E140K|DLG2_uc010rsx.1_Missense_Mutation_p.E153K	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	676						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				AACTTACTTTCCTGCCTTGTA	0.418													22	61					0	0	0.002780	0	0
DLG2	1740	broad.mit.edu	37	11	83344270	83344270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:83344270G>A	uc001paj.2	-	14	1912	c.1609C>T	c.(1609-1611)CGC>TGC	p.R537C	DLG2_uc001pai.2_Missense_Mutation_p.R434C|DLG2_uc010rsy.1_Missense_Mutation_p.R504C|DLG2_uc010rsz.1_Missense_Mutation_p.R537C|DLG2_uc010rta.1_Missense_Mutation_p.R537C|DLG2_uc001pak.2_Missense_Mutation_p.R642C|DLG2_uc010rtb.1_Missense_Mutation_p.R504C|DLG2_uc001pal.1_Missense_Mutation_p.R537C|DLG2_uc010rsw.1_Missense_Mutation_p.R19C|DLG2_uc010rsx.1_Missense_Mutation_p.R18C	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	537	SH3.					cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TAGAGGGAGCGTTTCTGATTG	0.478													19	13					0	0	0.003954	0	0
NOX4	50507	broad.mit.edu	37	11	89184968	89184968	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:89184968G>A	uc001pct.2	-	3	488	c.249C>T	c.(247-249)CTC>CTT	p.L83L	NOX4_uc009yvr.2_Silent_p.L58L|NOX4_uc001pcu.2_Silent_p.L9L|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Silent_p.L83L|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Intron|NOX4_uc009yvp.2_Silent_p.L83L|NOX4_uc010rtv.1_Silent_p.L59L|NOX4_uc009yvq.2_Silent_p.L59L|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	83	Ferric oxidoreductase.|Helical; (Potential).				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				GTGATCCTCGGAGGTAAGCCA	0.413													38	26					0	0	0.003214	0	0
FOLH1B	219595	broad.mit.edu	37	11	89429862	89429862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:89429862C>T	uc001pda.2	+	13	1634	c.1108C>T	c.(1108-1110)CCA>TCA	p.P370S		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	370					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						ATTTATTGATCCATTAGGGTT	0.294													20	41					0	0	0.002299	0	0
NAALAD2	10003	broad.mit.edu	37	11	89911178	89911178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:89911178C>T	uc001pdf.3	+	16	1860	c.1751C>T	c.(1750-1752)CCT>CTT	p.P584L	NAALAD2_uc009yvx.2_Missense_Mutation_p.P551L|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	584	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AAAATCATTCCTTTTAATATT	0.338													27	24					0	0	0.005443	0	0
NAALAD2	10003	broad.mit.edu	37	11	89924813	89924813	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:89924813T>C	uc001pdf.3	+	19	2230	c.2121T>C	c.(2119-2121)AAT>AAC	p.N707N	NAALAD2_uc009yvx.2_Silent_p.N674N|NAALAD2_uc009yvy.2_Missense_Mutation_p.I295T	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	707	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				ATATTGAAAATAAAGCCAACT	0.358													45	27					0	0	0.002852	0	0
FAT3	120114	broad.mit.edu	37	11	92087720	92087720	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:92087720G>A	uc001pdj.3	+	1	2459	c.2442G>A	c.(2440-2442)TGG>TGA	p.W814*		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	814	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AATCGTCATGGAGACTGCTGA	0.413										TCGA Ovarian(4;0.039)			303	251					0	0	0.003610	0	0
CCDC67	159989	broad.mit.edu	37	11	93088703	93088703	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:93088703C>T	uc001pdq.2	+	3	296	c.196C>T	c.(196-198)CAA>TAA	p.Q66*	CCDC67_uc001pdo.1_Nonsense_Mutation_p.Q66*|CCDC67_uc001pdp.2_Nonsense_Mutation_p.Q66*	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	66										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TCAGAAAGGTCAAGAGGTACT	0.333													7	21					0	0	0.001984	0	0
CCDC67	159989	broad.mit.edu	37	11	93122228	93122228	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:93122228G>A	uc001pdq.2	+	9	1078	c.978G>A	c.(976-978)AGG>AGA	p.R326R	CCDC67_uc001pdo.1_Silent_p.R326R|CCDC67_uc001pdp.2_Silent_p.R326R	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	326										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AACCAGAAAGGAAAATAAAAG	0.284													6	11					0	0	0.001984	0	0
HEPHL1	341208	broad.mit.edu	37	11	93839186	93839186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:93839186C>T	uc001pep.2	+	17	3092	c.2935C>T	c.(2935-2937)CAT>TAT	p.H979Y	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	979	Extracellular (Potential).|Plastocyanin-like 6.				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TGGGAATCTCCATGGCCTCAT	0.338													20	18					0	0	0.001523	0	0
KDM4D	55693	broad.mit.edu	37	11	94731674	94731674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:94731674C>T	uc001pfe.2	+	3	1970	c.1138C>T	c.(1138-1140)CAC>TAC	p.H380Y		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	380					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						ACTCCCTTCCCACTGGGCCCG	0.632													15	13					0	0	0.002450	0	0
CNTN5	53942	broad.mit.edu	37	11	100061878	100061878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:100061878G>A	uc001pga.2	+	14	1940	c.1601G>A	c.(1600-1602)GGG>GAG	p.G534E	CNTN5_uc009ywv.1_Missense_Mutation_p.G534E|CNTN5_uc001pfz.2_Missense_Mutation_p.G534E|CNTN5_uc001pgb.2_Missense_Mutation_p.G460E|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	534	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTTCCAGACGGGAGTCTACGG	0.368													13	28					0	0	0.002450	0	0
PGR	5241	broad.mit.edu	37	11	100999107	100999107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:100999107G>A	uc001pgh.2	-	1	1438	c.695C>T	c.(694-696)TCT>TTT	p.S232F	PGR_uc001pgi.2_Missense_Mutation_p.S232F|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	232	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CGGACCCGCAGACTCCTCGGA	0.721													5	18					0	0	0.000602	0	0
TRPC6	7225	broad.mit.edu	37	11	101342876	101342876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:101342876C>T	uc001pgk.3	-	8	2622	c.2197G>A	c.(2197-2199)GAA>AAA	p.E733K	TRPC6_uc009ywy.2_Missense_Mutation_p.E617K|TRPC6_uc009ywz.1_Missense_Mutation_p.E678K	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	733	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		ACCTCAATTTCCTGGAATGAA	0.343													20	83					0	0	0.001882	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101776579	101776579	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:101776579C>T	uc001pgl.2	-	4	838	c.242_splice	c.e4-1	p.R81_splice		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor						signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TGCAAATTTCCTTAACCATAA	0.274													5	29					0	0	0.000602	0	0
DDI1	414301	broad.mit.edu	37	11	103907792	103907792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:103907792G>A	uc001phr.2	+	1	485	c.242G>A	c.(241-243)GGA>GAA	p.G81E	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	81	Ubiquitin-like.				proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GACAATGTGGGACCTCGGGCT	0.607													81	84					0	0	0.003610	0	0
DDI1	414301	broad.mit.edu	37	11	103908311	103908311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:103908311C>T	uc001phr.2	+	1	1004	c.761C>T	c.(760-762)CCT>CTT	p.P254L	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	254					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		AATGGGCATCCTTTGAAGGCT	0.493													65	62					0	0	0.003610	0	0
GRIA4	2893	broad.mit.edu	37	11	105842677	105842677	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:105842677G>A	uc001pix.2	+	15	2777	c.2331G>A	c.(2329-2331)GAG>GAA	p.E777E	GRIA4_uc001piw.2_Intron|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_Intron	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	777	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AACTCAGTGAGGCAGGCGTCT	0.403													23	24					0	0	0.003330	0	0
CWF19L2	143884	broad.mit.edu	37	11	107260882	107260883	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:107260882_107260883AG>GA	uc010rvp.1	-	12	1819_1820	c.1789_1790CT>TC	c.(1789-1791)CTA>TCA	p.L597S	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	597							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		ATTTAGGCTTAGATTATCATCA	0.322													15	19					0	0	0.004672	0	0
USP28	57646	broad.mit.edu	37	11	113712389	113712389	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:113712389T>C	uc001poh.2	-	4	403	c.370A>G	c.(370-372)AAC>GAC	p.N124D	USP28_uc010rwy.1_5'UTR|USP28_uc001poi.2_5'UTR|USP28_uc001poj.3_Missense_Mutation_p.N124D|USP28_uc010rwz.1_Missense_Mutation_p.N124D	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	124					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		AATAACCTGTTAAGATCTCTT	0.393													27	8					0	0	0.005443	0	0
ZBTB16	7704	broad.mit.edu	37	11	114121090	114121090	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:114121090G>T	uc001pop.2	+	7	2099	c.1835G>T	c.(1834-1836)CGG>CTG	p.R612L	ZBTB16_uc001poq.2_Missense_Mutation_p.R612L	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	612	C2H2-type 8.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		CAGCGCTCCCGGGACTACTCG	0.617													19	16					1.64293e-13	2.38904e-13	0.003330	1	0
FAM55D	54827	broad.mit.edu	37	11	114453476	114453476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:114453476C>T	uc001ppc.2	-	3	545	c.364G>A	c.(364-366)GAG>AAG	p.E122K	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	122						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TCCCTCACCTCCAGCAGGATG	0.597													15	9					0	0	0.004007	0	0
RNF214	257160	broad.mit.edu	37	11	117152097	117152097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:117152097C>T	uc001pqt.2	+	9	1258	c.1213C>T	c.(1213-1215)CGG>TGG	p.R405W	RNF214_uc001pqu.2_Missense_Mutation_p.R405W|RNF214_uc010rxf.1_Missense_Mutation_p.R250W	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	405							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		GAATGGAGTTCGGATAATGAA	0.423													7	3					0	0	0.003080	0	0
CEP164	22897	broad.mit.edu	37	11	117242073	117242073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:117242073C>T	uc001prc.2	+	9	1190	c.1043C>T	c.(1042-1044)CCA>CTA	p.P348L	CEP164_uc001prb.2_Missense_Mutation_p.P348L|CEP164_uc010rxk.1_Missense_Mutation_p.P322L|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	348					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AAGGAAGCACCAGAGGACACA	0.537													36	14					0	0	0.003271	0	0
BCL9L	283149	broad.mit.edu	37	11	118769743	118769744	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:118769743_118769744GG>AA	uc001pug.2	-	8	4845_4846	c.3880_3881CC>TT	c.(3880-3882)CCA>TTA	p.P1294L	BCL9L_uc009zal.2_Missense_Mutation_p.P1289L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1294	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CACACCCGGTGGGTATGCGTCG	0.688													7	2					0	0	0.004672	0	0
PVRL1	5818	broad.mit.edu	37	11	119545890	119545890	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:119545890G>A	uc001pwv.2	-	5	1154	c.982C>T	c.(982-984)CAG>TAG	p.Q328*	PVRL1_uc001pwu.1_Nonsense_Mutation_p.Q328*|PVRL1_uc001pww.2_Nonsense_Mutation_p.Q328*	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	328	Extracellular (Potential).|Ig-like C2-type 2.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		ACCTCCACCTGGCCTGAGCGT	0.592													7	4					0	0	0.001984	0	0
TECTA	7007	broad.mit.edu	37	11	121058574	121058574	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:121058574C>T	uc010rzo.1	+	20	6033	c.6033C>T	c.(6031-6033)ATC>ATT	p.I2011I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2011	ZP.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CCATTGGCATCGAGGAGAATG	0.433													20	15					0	0	0.001523	0	0
UBASH3B	84959	broad.mit.edu	37	11	122669681	122669681	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:122669681C>T	uc001pyi.3	+	10	1749	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	463	Protein tyrosine phosphatase (By similarity).					cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		ATACCATTATCGATCATGTCT	0.443													16	6					0	0	0.004007	0	0
CRTAM	56253	broad.mit.edu	37	11	122738726	122738726	+	Missense_Mutation	SNP	G	A	A	rs148256561		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:122738726G>A	uc001pyj.2	+	9	970	c.970G>A	c.(970-972)GAA>AAA	p.E324K	CRTAM_uc001pyk.2_Missense_Mutation_p.E125K	NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	324	Cytoplasmic (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TGTAGAAAACGAAGTTTCAGA	0.323													14	11					0	0	0.004990	0	0
TMEM225	338661	broad.mit.edu	37	11	123755324	123755324	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:123755324C>T	uc001pzi.2	-	2	409	c.201G>A	c.(199-201)AGG>AGA	p.R67R		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	67						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TCATCATAATCCTGACCACTT	0.408													8	7					0	0	0.000673	0	0
OR10G4	390264	broad.mit.edu	37	11	123887152	123887152	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:123887152A>T	uc010sac.1	+	1	871	c.871A>T	c.(871-873)AAC>TAC	p.N291Y		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CACCCTGAGAAACAAGGAGGT	0.433													20	14					0	0	0.003330	0	0
OR10G7	390265	broad.mit.edu	37	11	123909189	123909189	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:123909189G>A	uc001pzq.1	-	1	520	c.520C>T	c.(520-522)CAG>TAG	p.Q174*		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AAGTAGTGCTGGATCTGGTTG	0.557													53	34					0	0	0.003610	0	0
ETS1	2113	broad.mit.edu	37	11	128426213	128426213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:128426213G>A	uc001qej.2	-	3	272	c.187C>T	c.(187-189)CCT>TCT	p.P63S		NM_001143820	NP_001137292	P14921	ETS1_HUMAN	v-ets erythroblastosis virus E26 oncogene	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell motility|immune response|induction of apoptosis|negative regulation of cell cycle|negative regulation of cell cycle|negative regulation of cell proliferation|PML body organization|positive regulation of cellular component movement|positive regulation of erythrocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|response to antibiotic|transcription from RNA polymerase II promoter	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			lung(4)|central_nervous_system(1)|pleura(1)	6	all_hematologic(175;0.0537)	Lung NSC(97;0.000542)|all_lung(97;0.000665)|Breast(109;0.00765)|all_neural(223;0.0351)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;1.47e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0174)|LUSC - Lung squamous cell carcinoma(976;0.0815)|Lung(307;0.0833)		AGACCAGTAGGAACTTCCTGA	0.448													25	11					0	0	0.007291	0	0
SNX19	399979	broad.mit.edu	37	11	130785480	130785480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:130785480G>A	uc001qgk.3	-	1	903	c.355C>T	c.(355-357)CGT>TGT	p.R119C	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.R119C|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	119	PXA.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		CTCACGGAACGGTACCAAGAT	0.542													14	6					0	0	0.002450	0	0
GLB1L2	89944	broad.mit.edu	37	11	134241034	134241034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr11:134241034C>T	uc001qhp.2	+	13	1536	c.1348C>T	c.(1348-1350)CGG>TGG	p.R450W	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	450					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CGTGCATGATCGGGGGCAGGT	0.542													16	24					0	0	0.006122	0	0
IQSEC3	440073	broad.mit.edu	37	12	274933	274933	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:274933G>A	uc001qhw.1	+	8	1945	c.1939G>A	c.(1939-1941)GGC>AGC	p.G647S	IQSEC3_uc001qhu.1_Missense_Mutation_p.G647S	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	950	PH.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		CCCGCTCTCGGGCTCCGAGAA	0.612													6	26					0	0	0.003080	0	0
WNK1	65125	broad.mit.edu	37	12	1005702	1005702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:1005702G>A	uc001qio.3	+	24	6556	c.6049G>A	c.(6049-6051)GCT>ACT	p.A2017T	WNK1_uc001qip.3_Missense_Mutation_p.A1769T|WNK1_uc001qir.3_Missense_Mutation_p.A1190T	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	2017					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CCCGGAGGCCGCTTTTTTAAG	0.498													11	36					0	0	0.000978	0	0
TULP3	7289	broad.mit.edu	37	12	3040401	3040401	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:3040401C>T	uc010seh.1	+	6	772	c.691C>T	c.(691-693)CAG>TAG	p.Q231*	TULP3_uc010sef.1_RNA|TULP3_uc009zec.1_5'UTR|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Nonsense_Mutation_p.Q231*|TULP3_uc010sei.1_Nonsense_Mutation_p.Q88*	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	231					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			AGAAGAAAATCAGAAGGTATG	0.403													12	2					0	0	0.001368	0	0
TEAD4	7004	broad.mit.edu	37	12	3129854	3129854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:3129854C>T	uc010sej.1	+	9	912	c.635C>T	c.(634-636)CCA>CTA	p.P212L	TEAD4_uc010sek.1_Missense_Mutation_p.P169L|TEAD4_uc001qln.2_Missense_Mutation_p.P84L	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	213					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			CCGGCACCCCCATGGCAGGGC	0.662													8	43					0	0	0.004482	0	0
AKAP3	10566	broad.mit.edu	37	12	4737380	4737380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4737380G>A	uc001qnb.3	-	4	917	c.688C>T	c.(688-690)CCA>TCA	p.P230S		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	230					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TTGTCATCTGGACCCTGTCTT	0.448													24	59					0	0	0.005443	0	0
AKAP3	10566	broad.mit.edu	37	12	4737890	4737890	+	Silent	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4737890G>T	uc001qnb.3	-	4	407	c.178C>A	c.(178-180)CGG>AGG	p.R60R		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	60					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GGTTTGAACCGAACATCTTGG	0.502													6	26					0.00116845	0.00167919	0.001168	1	0
GALNT8	26290	broad.mit.edu	37	12	4870139	4870139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4870139G>A	uc001qne.1	+	7	1281	c.1189G>A	c.(1189-1191)GGG>AGG	p.G397R		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	397	Lumenal (Potential).|Catalytic subdomain B.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						GCAGTGTGGAGGGAAGGTCGA	0.502													31	17					0	0	0.003755	0	0
KCNA6	3742	broad.mit.edu	37	12	4920691	4920691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4920691G>A	uc001qng.2	+	1	2350	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	495						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						ACTGACAACGGACTTGGCAAG	0.592										HNSCC(72;0.22)			8	36					0	0	0.003080	0	0
KCNA6	3742	broad.mit.edu	37	12	4920712	4920712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4920712C>T	uc001qng.2	+	1	2371	c.1505C>T	c.(1504-1506)CCC>CTC	p.P502L		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	502						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CCTGACTTCCCCGAGGCTAAC	0.607										HNSCC(72;0.22)			28	15					0	0	0.001512	0	0
KCNA6	3742	broad.mit.edu	37	12	4920740	4920740	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:4920740C>T	uc001qng.2	+	1	2399	c.1533C>T	c.(1531-1533)AGC>AGT	p.S511S		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	511						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GGAGACCCAGCTACCTTCCTA	0.612										HNSCC(72;0.22)			29	15					0	0	0.007291	0	0
VWF	7450	broad.mit.edu	37	12	6101035	6101035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6101035G>A	uc001qnn.1	-	38	6998	c.6748C>T	c.(6748-6750)CCT>TCT	p.P2250S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2250	E2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCCTCTTCAGGGACACAGCTG	0.592													23	12					0	0	0.003330	0	0
VWF	7450	broad.mit.edu	37	12	6103062	6103062	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6103062C>T	uc001qnn.1	-	37	6814	c.6564G>A	c.(6562-6564)GGG>GGA	p.G2188G	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2188					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAACGCAGACCCCGTTGGTCC	0.488													4	41					0	0	0.000602	0	0
VWF	7450	broad.mit.edu	37	12	6174349	6174349	+	Missense_Mutation	SNP	C	T	T	rs137950753		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6174349C>T	uc001qnn.1	-	11	1497	c.1247G>A	c.(1246-1248)CGG>CAG	p.R416Q	VWF_uc010set.1_Missense_Mutation_p.R416Q	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	416	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTGGCAATCCCGGGCCAGCAG	0.562													12	9					0	0	0.001855	0	0
SCNN1A	6337	broad.mit.edu	37	12	6463648	6463648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6463648G>A	uc001qnx.2	-	8	1605	c.1316C>T	c.(1315-1317)CCC>CTC	p.P439L	SCNN1A_uc001qnv.2_Missense_Mutation_p.P139L|SCNN1A_uc001qnw.2_Missense_Mutation_p.P498L|SCNN1A_uc010sfb.1_Missense_Mutation_p.P462L	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	439	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	CACGTTCTGGGGCCGCGGATA	0.582													9	31					0	0	0.004482	0	0
CHD4	1108	broad.mit.edu	37	12	6700950	6700950	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6700950G>A	uc001qpo.2	-	21	3296	c.3132C>T	c.(3130-3132)GCC>GCT	p.A1044A	CHD4_uc001qpn.2_Silent_p.A1037A|CHD4_uc001qpp.2_Silent_p.A1041A	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1044					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CTCTGATTAGGGCACTGCCAT	0.438													8	21					0	0	0.003080	0	0
CD4	920	broad.mit.edu	37	12	6927708	6927708	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6927708G>A	uc001qqv.1	+	8	1523	c.1278G>A	c.(1276-1278)AGG>AGA	p.R426R	CD4_uc010sfj.1_Silent_p.R153R|CD4_uc009zfc.1_Silent_p.R247R|CD4_uc010sfk.1_Silent_p.R153R|CD4_uc010sfl.1_Silent_p.R153R|CD4_uc010sfm.1_Silent_p.R153R	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	426	Cytoplasmic (Potential).				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				GGCACCGAAGGGTGAGTAACC	0.597													24	11					0	0	0.004656	0	0
USP5	8078	broad.mit.edu	37	12	6973281	6973281	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:6973281C>T	uc001qri.3	+	17	2225	c.2166C>T	c.(2164-2166)CCC>CCT	p.P722P	USP5_uc001qrh.3_Silent_p.P699P	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	722	UBA 2.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						CAGCCGACCCCCCTCCTGAGG	0.627													14	78					0	0	0.001855	0	0
C1S	716	broad.mit.edu	37	12	7173168	7173168	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7173168C>T	uc001qsj.2	+	10	1484	c.765C>T	c.(763-765)TTC>TTT	p.F255F	C1S_uc001qsk.2_Silent_p.F255F|C1S_uc001qsl.2_Silent_p.F255F|C1S_uc009zfr.2_Silent_p.F88F|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	255	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GTCATGGATTCCCTGGGCCTC	0.408													4	42					0	0	0.000602	0	0
C1S	716	broad.mit.edu	37	12	7177477	7177477	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7177477T>A	uc001qsj.2	+	15	2308	c.1589T>A	c.(1588-1590)ATT>AAT	p.I530N	C1S_uc001qsk.2_Missense_Mutation_p.I530N|C1S_uc001qsl.2_Missense_Mutation_p.I530N|C1S_uc009zfr.2_Missense_Mutation_p.I363N|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	530	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GATAATGACATTGCACTGGTG	0.517													21	7					0	0	0.001882	0	0
C1RL	51279	broad.mit.edu	37	12	7252584	7252584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7252584C>T	uc001qsn.2	-	4	546	c.529G>A	c.(529-531)GGC>AGC	p.G177S	C1RL_uc009zft.2_Missense_Mutation_p.G177S	NM_016546	NP_057630	Q9NZP8	C1RL_HUMAN	complement component 1, r subcomponent-like	177					complement activation, classical pathway|innate immune response|proteolysis		serine-type endopeptidase activity			pancreas(1)	1						GCCTCAGAGCCCCTGCTGGCC	0.493													4	25					0	0	0.000248	0	0
CD163L1	283316	broad.mit.edu	37	12	7527914	7527914	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7527914G>A	uc001qsy.2	-	11	2990	c.2964C>T	c.(2962-2964)CCC>CCT	p.P988P	CD163L1_uc010sge.1_Silent_p.P998P	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	988	SRCR 9.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CATGGATACAGGGAGGTGCTC	0.443													4	23					0	0	0.001168	0	0
CD163L1	283316	broad.mit.edu	37	12	7531734	7531734	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7531734G>A	uc001qsy.2	-	9	2237	c.2211C>T	c.(2209-2211)ATC>ATT	p.I737I	CD163L1_uc010sge.1_Silent_p.I747I	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	737	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGGAGACCCTGATTGCAGACC	0.483													8	69					0	0	0.003080	0	0
CD163	9332	broad.mit.edu	37	12	7632536	7632536	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7632536A>T	uc001qsz.3	-	16	3528	c.3400T>A	c.(3400-3402)TTT>ATT	p.F1134I	CD163_uc001qta.3_Intron|CD163_uc009zfw.2_Intron	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1134	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATAGGAAGAAATTTAGACACA	0.373													7	28					0	0	0.001984	0	0
APOBEC1	339	broad.mit.edu	37	12	7802203	7802203	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7802203C>T	uc001qtb.2	-	5	685	c.651G>A	c.(649-651)ACG>ACA	p.T217T	APOBEC1_uc001qtc.2_Silent_p.T172T|APOBEC1_uc010sgf.1_Silent_p.T217T	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	217					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						GTGGCGGAATCGTTTGGTAAT	0.398													5	42					0	0	0.000602	0	0
APOBEC1	339	broad.mit.edu	37	12	7805127	7805127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:7805127C>T	uc001qtb.2	-	3	383	c.349G>A	c.(349-351)GCT>ACT	p.A117T	APOBEC1_uc001qtc.2_Missense_Mutation_p.A72T|APOBEC1_uc010sgf.1_Missense_Mutation_p.A117T	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	117					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						AAAAGCCGAGCTACGTAGATC	0.478													12	48					0	0	0.002450	0	0
FOXJ2	55810	broad.mit.edu	37	12	8201356	8201356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:8201356G>A	uc001qtu.2	+	8	2374	c.1289G>A	c.(1288-1290)CGG>CAG	p.R430Q	FOXJ2_uc001qtt.1_Missense_Mutation_p.R430Q	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	430					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		ATGGTGAATCGGCTCAATTGG	0.428													17	97					0	0	0.001523	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376722	8376722	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:8376722C>T	uc001qui.2	-	5	772	c.213G>A	c.(211-213)CCG>CCA	p.P71P	FAM90A1_uc001quh.2_Silent_p.P71P	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	71							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		CCCCAAAGTTCGGTGGAACCA	0.552													10	79					0	0	0.006214	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687365	8687365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:8687365C>T	uc001quo.1	-	6	694	c.529G>A	c.(529-531)GAG>AAG	p.E177K		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	177	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					GCACAGTCCTCCAGGGTAGCT	0.413													45	20					0	0	0.003610	0	0
A2ML1	144568	broad.mit.edu	37	12	8988120	8988120	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:8988120G>A	uc001quz.3	+	6	599	c.501G>A	c.(499-501)AGG>AGA	p.R167R		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	11						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						ATAGCAACAGGATTGCACAGT	0.512													6	52					0	0	0.001984	0	0
A2ML1	144568	broad.mit.edu	37	12	9008104	9008104	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:9008104G>A	uc001quz.3	+	23	2863	c.2765_splice	c.e23-1	p.G922_splice	A2ML1_uc001qva.1_Splice_Site_p.G502_splice|A2ML1_uc010sgm.1_Splice_Site_p.G422_splice	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor							extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GCATCTCACAGGAAAGGTGGC	0.443													12	55					0	0	0.002450	0	0
A2M	2	broad.mit.edu	37	12	9231867	9231867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:9231867C>T	uc001qvk.1	-	25	3205	c.3092G>A	c.(3091-3093)CGA>CAA	p.R1031Q	A2M_uc001qvj.1_Missense_Mutation_p.R73Q|A2M_uc009zgk.1_Missense_Mutation_p.R881Q	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	1031					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	CCTGCCATATCGCTCCCCAAA	0.318													33	20					0	0	0.004289	0	0
CLEC2B	9976	broad.mit.edu	37	12	10005967	10005967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:10005967C>T	uc001qwn.2	-	5	1039	c.382G>A	c.(382-384)GAT>AAT	p.D128N		NM_005127	NP_005118	Q92478	CLC2B_HUMAN	C-type lectin, superfamily member 2	128	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding				0						GCACCATCATCGCTGAGGTAG	0.418													10	40					0	0	0.001368	0	0
CLEC7A	64581	broad.mit.edu	37	12	10277969	10277969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:10277969G>A	uc001qxg.2	-	4	606	c.419C>T	c.(418-420)TCC>TTC	p.S140F	CLEC7A_uc001qxe.3_RNA|CLEC7A_uc001qxf.2_Missense_Mutation_p.S94F|CLEC7A_uc001qxh.2_Missense_Mutation_p.S94F|CLEC7A_uc001qxi.2_Missense_Mutation_p.S140F|CLEC7A_uc001qxj.2_Missense_Mutation_p.S61F|CLEC7A_uc009zhg.1_Intron|CLEC7A_uc001qxk.1_RNA|CLEC7A_uc001qxl.1_Missense_Mutation_p.S140F|CLEC7A_uc010sgy.1_Missense_Mutation_p.S94F|CLEC7A_uc001qxm.1_Missense_Mutation_p.S94F	NM_197947	NP_922938	Q9BXN2	CLC7A_HUMAN	dendritic cell-associated C-type lectin 1	140	C-type lectin.|Extracellular (Potential).				carbohydrate mediated signaling|defense response to protozoan|inflammatory response|innate immune response|phagocytosis, recognition|T cell activation	cytoplasm|integral to membrane	metal ion binding|MHC protein binding|sugar binding			central_nervous_system(1)	1						TCCATCCCAGGAATTTAGTGA	0.383													39	23					0	0	0.002522	0	0
STYK1	55359	broad.mit.edu	37	12	10782194	10782194	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:10782194C>T	uc001qys.2	-	6	1052	c.531G>A	c.(529-531)CTG>CTA	p.L177L		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	177	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CCAGCTGCACCAGGTTTTTGT	0.527										HNSCC(73;0.22)			8	38					0	0	0.006214	0	0
PRB4	5545	broad.mit.edu	37	12	11461663	11461663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:11461663C>T	uc001qzf.1	-	3	288	c.254G>A	c.(253-255)GGA>GAA	p.G85E	PRB4_uc001qzt.2_Missense_Mutation_p.G85E	NM_002723	NP_002714	P10163	PRB4_HUMAN	proline-rich protein BstNI subfamily 4	85	9.5 X 21 AA tandem repeats of K-P-[EQ]- [GR]-[PR]-[PR]-P-Q-G-G-N-Q-[PS]-[QH]- [RG]-[PT]-P-P-[PH]-P-G.|3.			Missing (in Ref. 7; CAA30542).		extracellular region				ovary(1)	1						CTGGTTGCCTCCTTGTGGGGG	0.612										HNSCC(22;0.051)			35	293					0	0	0.007835	0	0
PRB2	653247	broad.mit.edu	37	12	11546491	11546491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:11546491C>T	uc010shk.1	-	3	556	c.521G>A	c.(520-522)CGA>CAA	p.R174Q		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGAGGAGATCGAGAACTTCG	0.607													118	79					0	0	0.003610	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716179	13716179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:13716179C>T	uc001rbt.2	-	13	4172	c.3993G>A	c.(3991-3993)ATG>ATA	p.M1331I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1331	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGCTCCCATCCATGAATCGGC	0.607													9	42					0	0	0.004482	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716751	13716751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:13716751C>T	uc001rbt.2	-	13	3600	c.3421G>A	c.(3421-3423)GAG>AAG	p.E1141K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1141	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGTGAGTTCTCCTTTGTTCGG	0.612													18	14					0	0	0.004990	0	0
ATF7IP	55729	broad.mit.edu	37	12	14631255	14631255	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:14631255C>T	uc001rbw.2	+	12	3104	c.2946C>T	c.(2944-2946)CCC>CCT	p.P982P	ATF7IP_uc001rbv.1_Silent_p.P981P|ATF7IP_uc001rbx.2_Silent_p.P981P|ATF7IP_uc001rby.3_Silent_p.P982P|ATF7IP_uc001rca.2_Silent_p.P982P	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	982					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TAACAGACCCCAAAAAACTAA	0.393													7	50					0	0	0.001984	0	0
GUCY2C	2984	broad.mit.edu	37	12	14804439	14804439	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:14804439G>A	uc001rcd.2	-	15	1749	c.1612C>T	c.(1612-1614)CAG>TAG	p.Q538*		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	538	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TAGTCAATCTGAAGCAACTAG	0.398													10	27					0	0	0.000978	0	0
RERG	85004	broad.mit.edu	37	12	15262375	15262375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:15262375C>T	uc001rcs.2	-	4	409	c.269G>A	c.(268-270)GGA>GAA	p.G90E	RERG_uc001rct.2_Missense_Mutation_p.G90E|RERG_uc010shu.1_Missense_Mutation_p.G71E	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	90					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						CTCAAAACTTCCTCGGTCAGT	0.478													44	282					0	0	0.003610	0	0
RERGL	79785	broad.mit.edu	37	12	18237579	18237579	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:18237579G>A	uc001rdq.2	-	5	401	c.207C>T	c.(205-207)TCC>TCT	p.S69S	RERGL_uc001rdr.2_Silent_p.S68S	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	69	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						CACTTGTGAGGGAGAATTTTG	0.378													42	18					0	0	0.003214	0	0
RERGL	79785	broad.mit.edu	37	12	18238594	18238594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:18238594C>T	uc001rdq.2	-	4	340	c.146G>A	c.(145-147)AGG>AAG	p.R49K	RERGL_uc001rdr.2_Missense_Mutation_p.R48K	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	49	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						TAGTTGTTTCCTTTCCAAACA	0.284													25	8					0	0	0.002096	0	0
CAPZA3	93661	broad.mit.edu	37	12	18892056	18892056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:18892056G>A	uc001rdy.2	+	1	1012	c.854G>A	c.(853-855)GGA>GAA	p.G285E	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	285					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				CCTAAATTAGGATATGTCATT	0.383													6	52					0	0	0.001984	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21294544	21294544	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:21294544G>A	uc001req.3	+	2	140	c.36G>A	c.(34-36)GAG>GAA	p.E12E		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	12	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	AAACAGCAGAGGCACAACCTT	0.299													18	32					0	0	0.003330	0	0
GOLT1B	51026	broad.mit.edu	37	12	21654863	21654863	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:21654863C>T	uc001rez.2	+	1	165	c.6C>T	c.(4-6)ATC>ATT	p.I2I	RECQL_uc001rex.2_5'Flank|RECQL_uc001rey.2_5'Flank|GOLT1B_uc009zis.2_RNA|GOLT1B_uc009zit.2_RNA|GOLT1B_uc009ziu.2_RNA	NM_016072	NP_057156	Q9Y3E0	GOT1B_HUMAN	golgi transport 1 homolog B	2	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport|vesicle-mediated transport	endoplasmic reticulum|Golgi membrane|integral to membrane	signal transducer activity				0						CAGCCATGATCTCCTTAACGG	0.677													22	3					0	0	0.003330	0	0
KCNJ8	3764	broad.mit.edu	37	12	21919284	21919284	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:21919284C>T	uc001rff.2	-	3	986	c.648G>A	c.(646-648)AGG>AGA	p.R216R		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	216	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	TCATGCTTTTCCTCAGGTCAC	0.507													18	100					0	0	0.001216	0	0
ABCC9	10060	broad.mit.edu	37	12	21970176	21970176	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:21970176C>T	uc001rfi.1	-	31	3857	c.3837G>A	c.(3835-3837)GTG>GTA	p.V1279V	ABCC9_uc001rfh.2_Silent_p.V1279V|ABCC9_uc001rfj.1_Silent_p.V1243V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1279	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCACCTTCTTCACTGCACCCA	0.353													34	89					0	0	0.007835	0	0
SOX5	6660	broad.mit.edu	37	12	24048856	24048856	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:24048856G>A	uc001rfw.2	-	2	243	c.141C>T	c.(139-141)CTC>CTT	p.L47L	SOX5_uc001rfx.2_Silent_p.L34L|SOX5_uc001rfy.2_Silent_p.L34L|SOX5_uc010siv.1_Silent_p.L34L|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Silent_p.L34L|SOX5_uc001rga.2_Silent_p.L47L	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	47					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						GAAAGGCTGGGAGCCCGTCAC	0.527													27	129					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	12	24736652	24736652	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:24736652G>A	uc001rgb.1	-	1		c.451C>T								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		TGCTCAGTGGGGAAGGAGGGT	0.567													15	72					0	0	0.004990	0	0
BCAT1	586	broad.mit.edu	37	12	24985736	24985736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:24985736C>T	uc001rgd.3	-	9	1407	c.965G>A	c.(964-966)GGG>GAG	p.G322E	BCAT1_uc001rgc.2_Missense_Mutation_p.G321E|BCAT1_uc010six.1_Missense_Mutation_p.G334E|BCAT1_uc010siy.1_Missense_Mutation_p.G285E|BCAT1_uc001rge.3_Missense_Mutation_p.G261E	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	322					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	CACTCTGTTCCCCTCCAGGGC	0.423													8	18					0	0	0.004482	0	0
BCAT1	586	broad.mit.edu	37	12	24989496	24989496	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:24989496G>A	uc001rgd.3	-	8	1294	c.852C>T	c.(850-852)ATC>ATT	p.I284I	BCAT1_uc001rgc.2_Silent_p.I283I|BCAT1_uc010six.1_Silent_p.I296I|BCAT1_uc010siy.1_Silent_p.I247I|BCAT1_uc001rge.3_Silent_p.I223I	NM_005504	NP_005495	P54687	BCAT1_HUMAN	branched chain aminotransferase 1, cytosolic	284					branched chain family amino acid biosynthetic process|branched chain family amino acid catabolic process|cell proliferation|G1/S transition of mitotic cell cycle	cytosol	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			lung(1)|breast(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Ovarian(17;0.107)|Colorectal(261;0.196)				Gabapentin(DB00996)|L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|L-Valine(DB00161)|Pyridoxal Phosphate(DB00114)	CTGGAAGAATGATGCCATCTA	0.418													13	7					0	0	0.002450	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27820188	27820188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:27820188C>T	uc001ric.1	+	13	1509	c.1132C>T	c.(1132-1134)CCA>TCA	p.P378S	PPFIBP1_uc010sjr.1_Missense_Mutation_p.P209S|PPFIBP1_uc001rib.1_Missense_Mutation_p.P361S|PPFIBP1_uc001ria.2_Missense_Mutation_p.P347S|PPFIBP1_uc001rid.1_Missense_Mutation_p.P225S	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	378	Potential.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					GGAGAAAAGTCCATCACCCAC	0.428													39	28					0	0	0.006230	0	0
REP15	387849	broad.mit.edu	37	12	27849684	27849684	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:27849684C>T	uc001rig.1	+	1	257	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001029874	NP_001025045	Q6BDI9	REP15_HUMAN	RAB15 effector protein	63						early endosome membrane				ovary(1)	1	Lung SC(9;0.0873)					TAATCCATTTCATCACTTTCT	0.453													21	23					0	0	0.001523	0	0
REP15	387849	broad.mit.edu	37	12	27849697	27849697	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:27849697C>T	uc001rig.1	+	1	270	c.202C>T	c.(202-204)CAA>TAA	p.Q68*		NM_001029874	NP_001025045	Q6BDI9	REP15_HUMAN	RAB15 effector protein	68						early endosome membrane				ovary(1)	1	Lung SC(9;0.0873)					CACTTTCTGCCAAGAAAAGGG	0.453													21	31					0	0	0.002299	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30867998	30867998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:30867998G>A	uc001rji.1	-	15	3296	c.2545C>T	c.(2545-2547)CCC>TCC	p.P849S	CAPRIN2_uc001rjf.1_Missense_Mutation_p.P645S|CAPRIN2_uc001rjg.1_Missense_Mutation_p.P516S|CAPRIN2_uc001rjh.1_Missense_Mutation_p.P799S|CAPRIN2_uc001rjj.1_Missense_Mutation_p.P515S|CAPRIN2_uc001rjk.3_Missense_Mutation_p.P848S|CAPRIN2_uc001rjl.3_Missense_Mutation_p.P793S|CAPRIN2_uc001rjm.1_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	849					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GTAGGTCTGGGAAACACATTC	0.438													25	44					0	0	0.005443	0	0
DDX11	1663	broad.mit.edu	37	12	31254895	31254895	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:31254895C>T	uc001rjt.1	+	21	2432	c.2181C>T	c.(2179-2181)GGC>GGT	p.G727G	DDX11_uc001rjr.1_Silent_p.G727G|DDX11_uc001rjs.1_Intron|DDX11_uc001rju.1_Silent_p.G399G|DDX11_uc001rjv.1_Silent_p.G727G|DDX11_uc001rjw.1_Silent_p.G701G|DDX11_uc009zjn.1_RNA|DDX11_uc009zjo.1_5'Flank	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	727					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GCCTGCTGGGCCGTCTGGCTG	0.637										Multiple Myeloma(12;0.14)			8	9					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	12	31269354	31269354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:31269354G>A	uc010sjy.1	-	29	3944	c.3944C>T	c.(3943-3945)TCT>TTT	p.S1315F	uc001rjy.2_RNA|uc001rjz.2_RNA					RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		CAAGGAAAGAGAAAATCCAGA	0.368													31	72					0	0	0.003755	0	0
BICD1	636	broad.mit.edu	37	12	32481426	32481427	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:32481426_32481427CC>TT	uc001rku.2	+	5	2118_2119	c.2037_2038CC>TT	c.(2035-2040)TCCCTG>TCTTTG	p.679_680SL>SL	BICD1_uc001rkv.2_Silent_p.679_680SL>SL|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	679_680	Potential.|Interacts with RAB6A.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			AGCTAAAGTCCCTGCTGAGCAC	0.51													18	59					0	0	0.004672	0	0
PKP2	5318	broad.mit.edu	37	12	32974422	32974422	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:32974422G>A	uc001rlj.3	-	10	2128	c.2013C>T	c.(2011-2013)CCC>CCT	p.P671P	PKP2_uc001rlk.3_Silent_p.P627P|PKP2_uc010skj.1_Silent_p.P624P	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	671	ARM 5.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CCACGCCCTTGGGGTTGCTCT	0.478													33	41					0	0	0.002836	0	0
PKP2	5318	broad.mit.edu	37	12	32993972	32993972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:32993972C>T	uc001rlj.3	-	7	1793	c.1678G>A	c.(1678-1680)GGA>AGA	p.G560R	PKP2_uc001rlk.3_Missense_Mutation_p.G516R|PKP2_uc010skj.1_Missense_Mutation_p.G516R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	560					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CTTAGGCATCCAGTGACGTTG	0.443													43	108					0	0	0.003610	0	0
PKP2	5318	broad.mit.edu	37	12	33031940	33031940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:33031940G>A	uc001rlj.3	-	2	365	c.250C>T	c.(250-252)CCT>TCT	p.P84S	PKP2_uc001rlk.3_Missense_Mutation_p.P84S|PKP2_uc010skj.1_Missense_Mutation_p.P84S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	84					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ACATACTCAGGAACACTGCTG	0.368													19	55					0	0	0.002299	0	0
SYT10	341359	broad.mit.edu	37	12	33535403	33535403	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:33535403C>T	uc001rll.1	-	5	1548	c.1251G>A	c.(1249-1251)AGG>AGA	p.R417R	SYT10_uc009zju.1_Silent_p.R227R	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	417	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TAGTTGTTTTCCTCTTTTTTA	0.368													21	53					0	0	0.005443	0	0
SYT10	341359	broad.mit.edu	37	12	33592443	33592443	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:33592443C>T	uc001rll.1	-	1	312	c.15G>A	c.(13-15)AAG>AAA	p.K5K	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	5	Vesicular (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTCCGTCCTCCTTGTGGAAAC	0.542													46	132					0	0	0.003610	0	0
LRRK2	120892	broad.mit.edu	37	12	40699676	40699676	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:40699676G>A	uc001rmg.3	+	28	3988	c.3867G>A	c.(3865-3867)GGG>GGA	p.G1289G	LRRK2_uc009zjw.2_Silent_p.G127G|LRRK2_uc001rmi.2_Silent_p.G122G	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1289	LRR 12.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATGAAATGGGGAAATTAAGCA	0.358													15	20					0	0	0.004990	0	0
GXYLT1	283464	broad.mit.edu	37	12	42523607	42523607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:42523607G>A	uc001rms.3	-	2	493	c.268C>T	c.(268-270)CCC>TCC	p.P90S	GXYLT1_uc001rmt.3_Intron	NM_173601	NP_775872	Q4G148	GXLT1_HUMAN	glycosyltransferase 8 domain containing 3	90	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						ACATCAGAGGGCAGCATCCAA	0.388													22	29					0	0	0.003330	0	0
PUS7L	83448	broad.mit.edu	37	12	44148400	44148400	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:44148400C>G	uc001rnq.3	-	2	1138	c.649G>C	c.(649-651)GAC>CAC	p.D217H	PUS7L_uc001rnr.3_Missense_Mutation_p.D217H|PUS7L_uc001rns.3_Missense_Mutation_p.D217H|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	217					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		TTAAAAAAGTCAAATGCTTCC	0.299													16	79					0	0	0.003163	0	0
PUS7L	83448	broad.mit.edu	37	12	44148638	44148638	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:44148638C>T	uc001rnq.3	-	2	900	c.411G>A	c.(409-411)CTG>CTA	p.L137L	PUS7L_uc001rnr.3_Silent_p.L137L|PUS7L_uc001rns.3_Silent_p.L137L|PUS7L_uc009zkb.2_Intron	NM_001098615	NP_001092085	Q9H0K6	PUS7L_HUMAN	pseudouridylate synthase 7 homolog (S.	137					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			pancreas(1)	1	all_cancers(12;0.00027)	Lung NSC(34;0.114)|all_lung(34;0.24)		GBM - Glioblastoma multiforme(48;0.0402)		CAAAATTATTCAGTAACTCAT	0.363													26	122					0	0	0.005443	0	0
NELL2	4753	broad.mit.edu	37	12	45173792	45173792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:45173792C>T	uc001rog.2	-	4	944	c.349G>A	c.(349-351)GAA>AAA	p.E117K	NELL2_uc001rof.3_Missense_Mutation_p.E116K|NELL2_uc001roh.2_Missense_Mutation_p.E117K|NELL2_uc009zkd.2_Missense_Mutation_p.E116K|NELL2_uc010skz.1_Missense_Mutation_p.E167K|NELL2_uc010sla.1_Missense_Mutation_p.E140K|NELL2_uc001roi.1_Missense_Mutation_p.E117K|NELL2_uc010slb.1_Missense_Mutation_p.E116K|NELL2_uc001roj.2_Missense_Mutation_p.E117K	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	117	TSP N-terminal.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CCACTACTTTCCAGTTCCAGG	0.393													16	81					0	0	0.007413	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457899	45457899	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:45457899G>A	uc001rol.2	-	1		c.1296C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CAGATAGCATGGATATCATCC	0.433													18	66					0	0	0.007413	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46320217	46320217	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:46320217A>C	uc001rox.2	-	11	3554	c.3267T>G	c.(3265-3267)TAT>TAG	p.Y1089*	SFRS2IP_uc001row.2_Nonsense_Mutation_p.Y774*|SFRS2IP_uc001roy.1_Nonsense_Mutation_p.Y1163*	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1089					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TCTGATCTTTATAGGCAAAAC	0.428													22	91					0	0	0.003330	0	0
SLC38A1	81539	broad.mit.edu	37	12	46582833	46582833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:46582833C>T	uc001rpa.2	-	17	1642	c.1384G>A	c.(1384-1386)GGG>AGG	p.G462R	SLC38A1_uc001rpb.2_Missense_Mutation_p.G462R|SLC38A1_uc001rpc.2_Missense_Mutation_p.G462R|SLC38A1_uc001rpd.2_Missense_Mutation_p.G462R|SLC38A1_uc001rpe.2_Missense_Mutation_p.G462R	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	462	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			AACAACACCCCCAGGCCCAAG	0.483													19	48					0	0	0.001882	0	0
SLC38A1	81539	broad.mit.edu	37	12	46598346	46598346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:46598346G>A	uc001rpa.2	-	10	932	c.674C>T	c.(673-675)TCC>TTC	p.S225F	SLC38A1_uc001rpb.2_Missense_Mutation_p.S225F|SLC38A1_uc001rpc.2_Missense_Mutation_p.S225F|SLC38A1_uc001rpd.2_Missense_Mutation_p.S225F|SLC38A1_uc001rpe.2_Missense_Mutation_p.S225F|SLC38A1_uc010slh.1_Missense_Mutation_p.S198F|SLC38A1_uc009zkj.1_Missense_Mutation_p.S225F	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	225	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			ACAGCTCAAGGAAAATCCACT	0.274													34	166					0	0	0.006230	0	0
SLC38A4	55089	broad.mit.edu	37	12	47162189	47162189	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:47162189C>T	uc001rpi.2	-	16	1845	c.1446G>A	c.(1444-1446)GGG>GGA	p.G482G	SLC38A4_uc001rpj.2_Silent_p.G482G	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	482	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					CAGAAGAAGCCCCTGAGAAGA	0.403													4	23					0	0	0.000602	0	0
SLC38A4	55089	broad.mit.edu	37	12	47163181	47163181	+	Missense_Mutation	SNP	G	A	A	rs142179678		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:47163181G>A	uc001rpi.2	-	15	1729	c.1330C>T	c.(1330-1332)CCC>TCC	p.P444S	SLC38A4_uc001rpj.2_Missense_Mutation_p.P444S	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	444	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					GGTCGTTTGGGAAATAACAGT	0.348													20	72					0	0	0.001882	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471889	47471889	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:47471889C>T	uc001rpm.2	-	3	1552	c.897G>A	c.(895-897)GAG>GAA	p.E299E	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Silent_p.E299E|AMIGO2_uc001rpl.2_Silent_p.E299E	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	299	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CGACCTGAGCCTCATGAATAA	0.498													95	65					0	0	0.003610	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471912	47471912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:47471912G>A	uc001rpm.2	-	3	1529	c.874C>T	c.(874-876)CGT>TGT	p.R292C	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.R292C|AMIGO2_uc001rpl.2_Missense_Mutation_p.R292C	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	292	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CCAAGCGCACGAAAGGAACCA	0.512													79	51					0	0	0.003610	0	0
FAM113B	91523	broad.mit.edu	37	12	47629193	47629193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:47629193C>T	uc001rpn.2	+	4	1078	c.347C>T	c.(346-348)CCC>CTC	p.P116L	FAM113B_uc010slj.1_5'UTR|FAM113B_uc001rpq.2_Missense_Mutation_p.P116L	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	116							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					GAGCACGCCCCCGACCTGGTC	0.567													34	47					0	0	0.004289	0	0
TMEM106C	79022	broad.mit.edu	37	12	48359717	48359717	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:48359717C>T	uc001rqp.2	+	4	463	c.348C>T	c.(346-348)GAC>GAT	p.D116D	TMEM106C_uc001rqo.2_Silent_p.D116D|TMEM106C_uc001rqr.2_Silent_p.D116D|TMEM106C_uc001rqq.2_Silent_p.D116D	NM_024056	NP_076961	Q9BVX2	T106C_HUMAN	transmembrane protein 106C isoform a	116						endoplasmic reticulum membrane|integral to membrane					0		Acute lymphoblastic leukemia(13;0.11)		GBM - Glioblastoma multiforme(48;0.241)		TGGATGATGACGGCATCAAAG	0.463													12	340					0	0	0.001368	0	0
TMEM106C	79022	broad.mit.edu	37	12	48361999	48361999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:48361999C>T	uc001rqp.2	+	8	855	c.740C>T	c.(739-741)TCC>TTC	p.S247F	TMEM106C_uc001rqo.2_Missense_Mutation_p.S228F|TMEM106C_uc001rqr.2_Missense_Mutation_p.S247F|TMEM106C_uc001rqq.2_Missense_Mutation_p.S228F	NM_024056	NP_076961	Q9BVX2	T106C_HUMAN	transmembrane protein 106C isoform a	247						endoplasmic reticulum membrane|integral to membrane					0		Acute lymphoblastic leukemia(13;0.11)		GBM - Glioblastoma multiforme(48;0.241)		GGAGGAAATTCCACAGCTATT	0.473													13	59					0	0	0.001855	0	0
OR8S1	341568	broad.mit.edu	37	12	48919812	48919812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:48919812G>A	uc010slu.1	+	1	398	c.398G>A	c.(397-399)GGA>GAA	p.G133E		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTACTTTATGGACAGATCATG	0.527													23	388					0	0	0.002299	0	0
LALBA	3906	broad.mit.edu	37	12	48963761	48963762	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:48963761_48963762GG>AA	uc001rrt.2	-	1	68_69	c.42_43CC>TT	c.(40-45)TTCCCT>TTTTCT	p.P15S		NM_002289	NP_002280	P00709	LALBA_HUMAN	lactalbumin, alpha- precursor	15					cell-cell signaling|defense response to bacterium|induction of apoptosis|lactose biosynthetic process|signal transduction	extracellular space	calcium ion binding|lactose synthase activity				0						AGGATGGCAGGGAACAGGATGC	0.47													145	37					0	0	0.004672	0	0
C12orf41	54934	broad.mit.edu	37	12	49065687	49065687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49065687G>A	uc001rrx.2	-	5	679	c.604C>T	c.(604-606)CGT>TGT	p.R202C	C12orf41_uc001rrw.2_Missense_Mutation_p.R7C|C12orf41_uc001rrz.2_Missense_Mutation_p.R385C|C12orf41_uc001rry.2_RNA|C12orf41_uc001rrv.2_5'Flank	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	202										ovary(2)	2						GACTGCAAACGAATTAGCTTT	0.403													186	204					0	0	0.003610	0	0
RND1	27289	broad.mit.edu	37	12	49258632	49258632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49258632C>T	uc001rsn.2	-	2	245	c.142G>A	c.(142-144)GAA>AAA	p.E48K		NM_014470	NP_055285	Q92730	RND1_HUMAN	GTP-binding protein RHO6 precursor	48	Effector region (Potential).				actin filament organization|axon guidance|negative regulation of cell adhesion|neuron remodeling|small GTPase mediated signal transduction	adherens junction|cytoskeleton|cytosol	GTP binding|GTPase activity|receptor binding			ovary(1)	1						GTGTAATTTTCGAACACGGTG	0.517													36	158					0	0	0.004289	0	0
DDN	23109	broad.mit.edu	37	12	49390542	49390542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49390542C>T	uc001rsv.1	-	2	2135	c.2117G>A	c.(2116-2118)GGA>GAA	p.G706E	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	706	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						CTTCCTATTTCCCTGTTGGGT	0.552											OREG0021778	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	19					0	0	0.003755	0	0
MLL2	8085	broad.mit.edu	37	12	49436535	49436535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49436535G>A	uc001rta.3	-	26	5771	c.5771C>T	c.(5770-5772)CCC>CTC	p.P1924L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1924					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TTGAAGAAAGGGCCTCTGCAG	0.547			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			30	74					0	0	0.002445	0	0
TROAP	10024	broad.mit.edu	37	12	49723655	49723655	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49723655C>A	uc001rtx.3	+	12	1347	c.1180C>A	c.(1180-1182)CGG>AGG	p.R394R	TROAP_uc009zlh.2_Silent_p.R394R|TROAP_uc001rty.2_Silent_p.R102R	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	394					cell adhesion	cytoplasm				ovary(1)	1						GGTTGCCGTCCGGTTGTTTGA	0.577													8	327					0.000274275	0.000395148	0.004482	1	0
KCNH3	23416	broad.mit.edu	37	12	49934911	49934911	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49934911G>A	uc001ruh.1	+	2	566	c.306G>A	c.(304-306)AAG>AAA	p.K102K	KCNH3_uc010smj.1_Silent_p.K42K	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	102	PAC.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						TGTACCGGAAGAGCGGTGAGG	0.612													5	49					0	0	0.000602	0	0
KCNH3	23416	broad.mit.edu	37	12	49944054	49944054	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49944054C>T	uc001ruh.1	+	10	2120	c.1860C>T	c.(1858-1860)TAC>TAT	p.Y620Y	KCNH3_uc010smj.1_Silent_p.Y560Y	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	620	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						AGGCCCTCTACTTTGTCTGCT	0.672													12	72					0	0	0.001855	0	0
FAM186B	84070	broad.mit.edu	37	12	49994666	49994667	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:49994666_49994667CC>TT	uc001ruo.2	-	4	929_930	c.756_757GG>AA	c.(754-759)AAGGAG>AAAAAG	p.E253K	FAM186B_uc010smk.1_Missense_Mutation_p.E163K	NM_032130	NP_115506	Q8IYM0	F186B_HUMAN	hypothetical protein LOC84070	253						protein complex				ovary(1)	1						CTCCTGTTCTCCTTGTGTTGGA	0.559													13	77					0	0	0.004672	0	0
SLC11A2	4891	broad.mit.edu	37	12	51390708	51390708	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:51390708G>A	uc001rxe.3	-	9	820	c.723C>T	c.(721-723)TTC>TTT	p.F241F	SLC11A2_uc001rxd.3_Silent_p.F90F|SLC11A2_uc001rxc.3_Silent_p.F241F|SLC11A2_uc001rxf.2_RNA|SLC11A2_uc001rxg.1_5'Flank|SLC11A2_uc010smx.1_Silent_p.F237F|SLC11A2_uc001rxh.1_Silent_p.F241F|SLC11A2_uc001rxj.1_Silent_p.F241F|SLC11A2_uc001rxi.2_Silent_p.F241F|SLC11A2_uc001rxk.1_Silent_p.F270F|SLC11A2_uc010smy.1_Silent_p.F204F	NM_000617	NP_000608	P49281	NRAM2_HUMAN	solute carrier family 11 (proton-coupled	241	Extracellular (Potential).				activation of caspase activity|cellular iron ion homeostasis|cellular response to oxidative stress|detection of oxygen|ferrous iron import|multicellular organismal iron ion homeostasis|response to hypoxia|response to iron ion	apical plasma membrane|basal part of cell|cell surface|cytoplasmic vesicle|early endosome|late endosome|late endosome membrane|lysosomal membrane|lysosome|nucleus|paraferritin complex|perinuclear region of cytoplasm|perinuclear region of cytoplasm|plasma membrane|recycling endosome|trans-Golgi network	cadmium ion transmembrane transporter activity|cadmium ion transmembrane transporter activity|cobalt ion transmembrane transporter activity|copper ion transmembrane transporter activity|ferrous iron transmembrane transporter activity|ferrous iron transmembrane transporter activity|lead ion transmembrane transporter activity|lead ion transmembrane transporter activity|manganese ion transmembrane transporter activity|manganese ion transmembrane transporter activity|nickel ion transmembrane transporter activity|protein binding|solute:hydrogen symporter activity|vanadium ion transmembrane transporter activity|zinc ion transmembrane transporter activity			large_intestine(1)	1						AGGATGGTACGAACATGCCCT	0.493													11	2					0	0	0.001368	0	0
GALNT6	11226	broad.mit.edu	37	12	51753045	51753045	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:51753045G>A	uc001ryk.2	-	7	1464	c.1239C>T	c.(1237-1239)AGC>AGT	p.S413S	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Silent_p.S413S|GALNT6_uc001ryj.1_5'UTR	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	413	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						AGGTGTGGGGGCTCTTGGTCC	0.557													44	31					0	0	0.003610	0	0
SCN8A	6334	broad.mit.edu	37	12	52200906	52200906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52200906C>T	uc001ryw.2	+	27	5814	c.5636C>T	c.(5635-5637)TCC>TTC	p.S1879F	uc001rzb.1_5'Flank	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1879					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	TCCAATCCTTCCAAAGTGTCT	0.572													42	103					0	0	0.006999	0	0
ACVRL1	94	broad.mit.edu	37	12	52307413	52307413	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52307413C>T	uc001rzj.2	+	4	667	c.384C>T	c.(382-384)GCC>GCT	p.A128A	ACVRL1_uc001rzk.2_Silent_p.A128A|ACVRL1_uc010snm.1_Intron	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	128	Helical; (Potential).				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CCGTGCTGGCCTTGCTGGCCC	0.682									Hereditary_Hemorrhagic_Telangiectasia				7	23					0	0	0.001984	0	0
ACVRL1	94	broad.mit.edu	37	12	52309924	52309924	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52309924A>T	uc001rzj.2	+	8	1436	c.1153A>T	c.(1153-1155)ATC>TTC	p.I385F	ACVRL1_uc001rzk.2_Missense_Mutation_p.I385F|ACVRL1_uc010snm.1_Missense_Mutation_p.I211F	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	385	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	GGACGAGCAGATCCGCACGGA	0.607									Hereditary_Hemorrhagic_Telangiectasia				55	26					0	0	0.003610	0	0
ACVRL1	94	broad.mit.edu	37	12	52309926	52309926	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52309926C>T	uc001rzj.2	+	8	1438	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	ACVRL1_uc001rzk.2_Silent_p.I385I|ACVRL1_uc010snm.1_Silent_p.I211I	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	385	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	ACGAGCAGATCCGCACGGACT	0.607									Hereditary_Hemorrhagic_Telangiectasia				56	24					0	0	0.003610	0	0
C12orf44	60673	broad.mit.edu	37	12	52470668	52470668	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52470668C>T	uc001rzu.3	+	4	826	c.351C>T	c.(349-351)ATC>ATT	p.I117I	C12orf44_uc009zmd.2_Silent_p.I117I|uc009zme.1_5'Flank	NM_021934	NP_068753	Q9BSB4	ATGA1_HUMAN	Atg13-interacting protein	117					autophagic vacuole assembly	pre-autophagosomal structure	identical protein binding|protein complex binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0978)		ACGAGTGCATCCCATGGGAAG	0.592													17	48					0	0	0.006122	0	0
KRT81	3887	broad.mit.edu	37	12	52681871	52681871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52681871C>T	uc001sab.2	-	5	847	c.797G>A	c.(796-798)AGC>AAC	p.S266N	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_Intron	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	266	Linker 12.|Rod.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CAGGTCCCGGCTGTTGTCCAG	0.562													21	104					0	0	0.001216	0	0
KRT83	3889	broad.mit.edu	37	12	52709692	52709692	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52709692T>C	uc001saf.2	-	7	1310	c.1247A>G	c.(1246-1248)GAG>GGG	p.E416G		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	416	Rod.|Coil 2.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CTCCTCGCCCTCCAGCAGGCG	0.577													71	39					0	0	0.003610	0	0
KRT6A	3853	broad.mit.edu	37	12	52886819	52886819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52886819C>T	uc001sam.2	-	1	363	c.154G>A	c.(154-156)GGA>AGA	p.G52R		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	52	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCAGCTCCTCCACATGCACCA	0.662													15	74					0	0	0.002299	0	0
KRT71	112802	broad.mit.edu	37	12	52939367	52939367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52939367G>A	uc001sao.2	-	8	1412	c.1342C>T	c.(1342-1344)CCC>TCC	p.P448S		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	448	Tail.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		ACAGGGGAGGGAAATTCTCCT	0.289													54	25					0	0	0.003610	0	0
KRT74	121391	broad.mit.edu	37	12	52967412	52967412	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52967412G>A	uc001sap.1	-	1	198	c.150C>T	c.(148-150)CTC>CTT	p.L50L		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	50	Head.|Gly-rich.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		CAAGGCTATAGAGGCTCCGAC	0.612													12	62					0	0	0.000978	0	0
KRT72	140807	broad.mit.edu	37	12	52981575	52981575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:52981575C>T	uc001sar.2	-	7	1236	c.1150G>A	c.(1150-1152)GAT>AAT	p.D384N	KRT72_uc001saq.2_Missense_Mutation_p.D384N|KRT72_uc010sns.1_Missense_Mutation_p.D342N|KRT72_uc010snt.1_Missense_Mutation_p.D196N	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	384	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		GCCCGGGCATCTTTCAGGGCG	0.642													17	64					0	0	0.004990	0	0
KRT2	3849	broad.mit.edu	37	12	53045694	53045694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53045694C>T	uc001sat.2	-	1	266	c.233G>A	c.(232-234)GGA>GAA	p.G78E		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	78	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		accacctcctccagccacACT	0.289													11	37					0	0	0.000673	0	0
KRT76	51350	broad.mit.edu	37	12	53170524	53170524	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53170524C>T	uc001sax.2	-	1	606	c.552G>A	c.(550-552)CGG>CGA	p.R184R		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	184	Coil 1A.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TGATCTGTTCCCGCTCCTGGG	0.562													17	129					0	0	0.001882	0	0
KRT3	3850	broad.mit.edu	37	12	53189292	53189292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53189292G>A	uc001say.2	-	1	601	c.535C>T	c.(535-537)CTC>TTC	p.L179F		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	179	Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						GGCTGCAGGAGACTCTGGTTG	0.522													11	53					0	0	0.000673	0	0
KRT78	196374	broad.mit.edu	37	12	53233610	53233610	+	Silent	SNP	C	T	T	rs149571950	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53233610C>T	uc001sbc.1	-	7	1270	c.1206G>A	c.(1204-1206)ACG>ACA	p.T402T		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	402	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GGGAAAGCTTCGTGCTCGTCA	0.617													12	54					0	0	0.001368	0	0
KRT78	196374	broad.mit.edu	37	12	53242410	53242410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53242410G>A	uc001sbc.1	-	1	369	c.305C>T	c.(304-306)CCC>CTC	p.P102L		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	102	Head.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						CTGGAACTGGGGATCGATCTC	0.572													32	19					0	0	0.002836	0	0
KRT78	196374	broad.mit.edu	37	12	53242527	53242527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53242527C>T	uc001sbc.1	-	1	252	c.188G>A	c.(187-189)GGG>GAG	p.G63E		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	63	Head.|Gly-rich.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						AAACCGCACCCCCAGCCTACC	0.642													9	13					0	0	0.004482	0	0
KRT18	3875	broad.mit.edu	37	12	53345998	53345998	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53345998G>A	uc001sbe.2	+	7	1113	c.1044G>A	c.(1042-1044)GAG>GAA	p.E348E	KRT18_uc009zmn.1_Silent_p.E348E|KRT18_uc001sbf.1_Silent_p.E175E|KRT18_uc001sbg.2_Silent_p.E348E|KRT18_uc009zmo.2_Silent_p.E348E|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	348	Interaction with DNAJB6.|Coil 2.|Rod.|Necessary for interaction with PNN.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						TTGAGTCAGAGCTGGCACAGA	0.632													4	5					0	0	0.000248	0	0
TENC1	23371	broad.mit.edu	37	12	53452367	53452367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53452367C>T	uc001sbp.2	+	16	1372	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S	TENC1_uc001sbl.2_Missense_Mutation_p.P289S|TENC1_uc001sbn.2_Missense_Mutation_p.P423S|TENC1_uc001sbq.2_5'UTR|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	413	C2 tensin-type.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						TGAGAGGTTCCCCTTCCAAGC	0.483													38	25					0	0	0.003610	0	0
ESPL1	9700	broad.mit.edu	37	12	53685836	53685836	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53685836C>T	uc001sck.2	+	27	5851	c.5760C>T	c.(5758-5760)TCC>TCT	p.S1920S	ESPL1_uc001scj.2_Silent_p.S1595S	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1920					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GGCTGCCCTCCTTCCGCTTCC	0.577													20	99					0	0	0.002780	0	0
PCBP2	5094	broad.mit.edu	37	12	53848587	53848587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:53848587G>A	uc001sdl.3	+	2	353	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PCBP2_uc001sdc.3_Missense_Mutation_p.M1I|PCBP2_uc001sdb.3_Missense_Mutation_p.M1I|PCBP2_uc001sde.3_Missense_Mutation_p.M1I|PCBP2_uc001sdi.3_Missense_Mutation_p.M1I|PCBP2_uc001sdd.3_Missense_Mutation_p.M1I|PCBP2_uc001sdf.3_Missense_Mutation_p.M1I|PCBP2_uc009zna.2_Missense_Mutation_p.M1I|PCBP2_uc010soh.1_Missense_Mutation_p.M1I|PCBP2_uc009zmz.1_Missense_Mutation_p.M1I	NM_001128911	NP_001122383	Q15366	PCBP2_HUMAN	poly(rC) binding protein 2 isoform d	1					innate immune response|negative regulation of defense response to virus|negative regulation of type I interferon production|nuclear mRNA splicing, via spliceosome|proteasomal ubiquitin-dependent protein catabolic process|response to virus	cytosol|nucleoplasm|ribonucleoprotein complex	DNA binding|RNA binding|ubiquitin protein ligase binding				0						TGCTCGACATGGACACCGGTG	0.463													30	71					0	0	0.001786	0	0
HOXC6	3223	broad.mit.edu	37	12	54423488	54423488	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:54423488G>A	uc001sev.2	+	2	562	c.450G>A	c.(448-450)CGG>CGA	p.R150R	HOXC6_uc001ses.2_Silent_p.R68R|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	150	Homeobox.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TCTACTCGCGGTACCAGACCC	0.597													26	11					0	0	0.005443	0	0
HOXC5	3222	broad.mit.edu	37	12	54427054	54427054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:54427054C>T	uc001sew.2	+	1	223	c.148C>T	c.(148-150)CCA>TCA	p.P50S	HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron|MIR615_hsa-mir-615|MI0003628_5'Flank	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	50					regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CATCACTTTCCCACCGCCTGC	0.642													21	7					0	0	0.001882	0	0
NEUROD4	58158	broad.mit.edu	37	12	55421163	55421163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55421163G>A	uc001sgp.3	+	2	1318	c.940G>A	c.(940-942)GAT>AAT	p.D314N		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	314					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CATGTCCTATGATTCCTACCC	0.453													63	821					0	0	0.003610	0	0
OR9K2	441639	broad.mit.edu	37	12	55523961	55523961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55523961G>A	uc010spe.1	+	1	409	c.409G>A	c.(409-411)GGA>AGA	p.G137R		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	137	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTGACTGAGGGATTTCTCCT	0.498													19	274					0	0	0.007413	0	0
OR6C74	254783	broad.mit.edu	37	12	55641396	55641396	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55641396G>T	uc010spg.1	+	1	325	c.325G>T	c.(325-327)GAA>TAA	p.E109*		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GGGGGCAACTGAATTTTTTCT	0.453													42	460					3.77016e-25	5.50033e-25	0.003214	1	0
OR6C1	390321	broad.mit.edu	37	12	55714535	55714535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55714535C>T	uc010spi.1	+	1	152	c.152C>T	c.(151-153)TCC>TTC	p.S51F		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						CTGCTGGATTCCCACCTGCAG	0.428													99	19					0	0	0.003610	0	0
OR6C75	390323	broad.mit.edu	37	12	55759079	55759079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55759079G>A	uc010spk.1	+	1	185	c.185G>A	c.(184-186)CGG>CAG	p.R62Q		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	62	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TTCTTCCTTCGGAACTTCTCA	0.433													35	345					0	0	0.005524	0	0
OR6C76	390326	broad.mit.edu	37	12	55820236	55820236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55820236G>A	uc010spm.1	+	1	199	c.199G>A	c.(199-201)GAA>AAA	p.E67K		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTTCTCCTTGGAAATTTCATT	0.398													23	340					0	0	0.001882	0	0
OR6C2	341416	broad.mit.edu	37	12	55846726	55846726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55846726G>A	uc001sgz.1	+	1	729	c.729G>A	c.(727-729)ATG>ATA	p.M243I		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CATCCCACATGATTGTGGTTT	0.403													29	278					0	0	0.007291	0	0
OR6C2	341416	broad.mit.edu	37	12	55846911	55846911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:55846911G>A	uc001sgz.1	+	1	914	c.914G>A	c.(913-915)AGG>AAG	p.R305K		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TCTATAAAGAGGATTGCATTT	0.388													14	90					0	0	0.002450	0	0
MMP19	4327	broad.mit.edu	37	12	56236179	56236179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:56236179C>T	uc001sib.2	-	2	252	c.131G>A	c.(130-132)GGA>GAA	p.G44E	MMP19_uc001sia.2_5'Flank|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Missense_Mutation_p.G44E	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	44					angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GTTATTAGATCCTTCTAGAGG	0.458													32	313					0	0	0.007835	0	0
MYL6	4637	broad.mit.edu	37	12	56553498	56553498	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:56553498G>A	uc001sjw.1	+	3	245	c.159G>A	c.(157-159)GGG>GGA	p.G53G	MYL6_uc001sjv.2_Silent_p.G53G|MYL6_uc001sjx.1_Silent_p.G53G|MYL6_uc010sqd.1_Silent_p.G146G|MYL6_uc001sjz.2_Silent_p.G18G|MYL6_uc010sqe.1_Silent_p.G18G	NM_021019	NP_066299	P60660	MYL6_HUMAN	myosin, light chain 6, alkali, smooth muscle and	53					axon guidance|muscle filament sliding|skeletal muscle tissue development	cytosol|unconventional myosin complex	actin-dependent ATPase activity|calcium ion binding|motor activity|structural constituent of muscle			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(18;0.0979)			AGGTCCTGGGGAACCCCAAGA	0.562													34	10					0	0	0.003755	0	0
SMARCC2	6601	broad.mit.edu	37	12	56558273	56558273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:56558273C>T	uc001skb.2	-	27	3488	c.3382G>A	c.(3382-3384)GGC>AGC	p.G1128S	SMARCC2_uc001skd.2_Intron|SMARCC2_uc001ska.2_Intron|SMARCC2_uc001skc.2_Intron|SMARCC2_uc010sqf.1_Intron	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	1128	Pro-rich.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGGAGAGTGCCCGGGGCGAAC	0.592													26	22					0	0	0.004656	0	0
SMARCC2	6601	broad.mit.edu	37	12	56575616	56575616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:56575616G>A	uc001skb.2	-	9	818	c.712C>T	c.(712-714)CAT>TAT	p.H238Y	SMARCC2_uc001skd.2_Missense_Mutation_p.H238Y|SMARCC2_uc001ska.2_Missense_Mutation_p.H238Y|SMARCC2_uc001skc.2_Missense_Mutation_p.H238Y|SMARCC2_uc010sqf.1_Missense_Mutation_p.H127Y	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	238					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CACTTTGCATGAACCTAAAGT	0.473													18	29					0	0	0.007413	0	0
PAN2	9924	broad.mit.edu	37	12	56722378	56722378	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:56722378G>A	uc001skx.2	-	3	703	c.330C>T	c.(328-330)TCC>TCT	p.S110S	PAN2_uc001skz.2_Silent_p.S110S|PAN2_uc001sky.2_Silent_p.S110S	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	110					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						TGACTTGAAAGGATGAGTAGC	0.507													10	164					0	0	0.001368	0	0
TAC3	6866	broad.mit.edu	37	12	57406176	57406177	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57406176_57406177GG>AA	uc001smp.2	-	6	512_513	c.352_353CC>TT	c.(352-354)CCG>TTG	p.P118L	TAC3_uc001smr.2_RNA|TAC3_uc001smq.2_RNA|TAC3_uc001smt.2_RNA|TAC3_uc001sms.2_RNA|TAC3_uc010sqy.1_RNA|TAC3_uc001smu.2_RNA|TAC3_uc001smv.2_RNA|TAC3_uc001smo.2_Missense_Mutation_p.P100L	NM_013251	NP_037383	Q9UHF0	TKNK_HUMAN	tachykinin 3 precursor	118					female pregnancy|neuropeptide signaling pathway|tachykinin receptor signaling pathway	extracellular space|soluble fraction	receptor binding			ovary(1)|skin(1)	2						TTCTGCTCTCGGGGGATACTTG	0.53													79	26					0	0	0.004672	0	0
MYO1A	4640	broad.mit.edu	37	12	57423625	57423625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57423625C>T	uc001smw.3	-	25	2866	c.2623G>A	c.(2623-2625)GGG>AGG	p.G875R	MYO1A_uc010sqz.1_Missense_Mutation_p.G713R|MYO1A_uc009zpd.2_Missense_Mutation_p.G875R	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	875					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CCTTGCAGCCCAATGTAGTCA	0.592													157	57					0	0	0.003610	0	0
MYO1A	4640	broad.mit.edu	37	12	57423650	57423650	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57423650G>A	uc001smw.3	-	25	2841	c.2598C>T	c.(2596-2598)CCC>CCT	p.P866P	MYO1A_uc010sqz.1_Silent_p.P704P|MYO1A_uc009zpd.2_Silent_p.P866P	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	866					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						AGAATGGAATGGGGACACTGA	0.622													15	161					0	0	0.004007	0	0
MYO1A	4640	broad.mit.edu	37	12	57424075	57424075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57424075G>A	uc001smw.3	-	24	2753	c.2510C>T	c.(2509-2511)TCC>TTC	p.S837F	MYO1A_uc010sqz.1_Missense_Mutation_p.S675F|MYO1A_uc009zpd.2_Missense_Mutation_p.S837F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	837					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CTGCTTCGGGGACAGCTGATC	0.562													24	196					0	0	0.001512	0	0
NAB2	4665	broad.mit.edu	37	12	57485152	57485152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57485152C>T	uc001smz.2	+	2	706	c.328C>T	c.(328-330)CCA>TCA	p.P110S		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	110	NCD1.				cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						GGCCACCAATCCAGGGCTCTT	0.592													31	354					0	0	0.002445	0	0
LRP1	4035	broad.mit.edu	37	12	57589078	57589078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57589078C>T	uc001snd.2	+	52	8799	c.8333C>T	c.(8332-8334)TCC>TTC	p.S2778F		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2778	LDL-receptor class A 17.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGCCCCTCCTCCTTCTCCTGC	0.622													44	294					0	0	0.002522	0	0
LRP1	4035	broad.mit.edu	37	12	57600321	57600321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57600321C>T	uc001snd.2	+	76	12122	c.11656C>T	c.(11656-11658)CCC>TCC	p.P3886S		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3886	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CCCCGGCCACCCCCATTCGGC	0.587													17	61					0	0	0.004990	0	0
R3HDM2	22864	broad.mit.edu	37	12	57648850	57648850	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57648850G>A	uc009zpm.1	-	22	2672	c.2637C>T	c.(2635-2637)ACC>ACT	p.T879T	R3HDM2_uc010srn.1_Intron|R3HDM2_uc001snu.2_Silent_p.T574T|R3HDM2_uc001snr.2_Silent_p.T606T|R3HDM2_uc001sns.2_Silent_p.T879T|R3HDM2_uc001snt.2_Silent_p.T893T|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	879						nucleus	nucleic acid binding			ovary(2)	2						CCTCAGTACGGGTGATGCCCT	0.622													16	146					0	0	0.007413	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57867865	57867865	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57867865C>A	uc001sod.2	-	19	2341	c.2148G>T	c.(2146-2148)CTG>CTT	p.L716L	ARHGAP9_uc001sny.2_Intron|ARHGAP9_uc001snz.2_Silent_p.L442L|ARHGAP9_uc001soa.2_Silent_p.L315L|ARHGAP9_uc001sob.2_Silent_p.L626L|ARHGAP9_uc001soc.2_Silent_p.L626L|ARHGAP9_uc001soe.1_Silent_p.L705L	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	645	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			GTGGTGGCACCAGAGGCTGGG	0.552													5	62					0.000602214	0.00086696	0.000602	1	0
KIF5A	3798	broad.mit.edu	37	12	57963333	57963333	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57963333G>A	uc001sor.1	+	11	1192	c.984G>A	c.(982-984)AAG>AAA	p.K328K	KIF5A_uc010srr.1_Silent_p.K239K	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	328	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						AGACCATTAAGAACACTGCCT	0.383													48	535					0	0	0.003610	0	0
KIF5A	3798	broad.mit.edu	37	12	57971510	57971510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57971510G>A	uc001sor.1	+	21	2523	c.2315G>A	c.(2314-2316)CGA>CAA	p.R772Q	KIF5A_uc010srr.1_Missense_Mutation_p.R683Q	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	772					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						CTGTACGAGCGACATGAGCAG	0.498													8	95					0	0	0.004482	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57994597	57994597	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:57994597C>T	uc001sou.2	+	8	948	c.817C>T	c.(817-819)CTA>TTA	p.L273L	PIP4K2C_uc001sot.2_Silent_p.L273L|PIP4K2C_uc010srs.1_Silent_p.L255L|PIP4K2C_uc010srt.1_Silent_p.L225L	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	273	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					GTCTCAGTTTCTAGTGCAGCT	0.537													60	766					0	0	0.003610	0	0
AVIL	10677	broad.mit.edu	37	12	58197128	58197128	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:58197128A>C	uc001sqj.1	-	15	1893	c.1864T>G	c.(1864-1866)TCC>GCC	p.S622A	AVIL_uc009zqe.1_Missense_Mutation_p.S615A|AVIL_uc001sqk.1_Missense_Mutation_p.S200A	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	622	Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GTCTTATTGGAACATTCAAAG	0.448											OREG0021955	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	435					0	0	0.007291	0	0
CTDSP2	10106	broad.mit.edu	37	12	58217423	58217423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:58217423C>T	uc001sqm.2	-	8	1307	c.778G>A	c.(778-780)GAC>AAC	p.D260N	CTDSP2_uc010ssg.1_Missense_Mutation_p.D134N|CTDSP2_uc009zqf.2_Missense_Mutation_p.D108N|CTDSP2_uc009zqg.2_Missense_Mutation_p.D87N	NM_005730	NP_005721	O14595	CTDS2_HUMAN	nuclear LIM interactor-interacting factor 2	260					protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			central_nervous_system(1)	1	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					GTGTAGACGTCCTCTGCTCCG	0.597													86	16					0	0	0.003610	0	0
XRCC6BP1	91419	broad.mit.edu	37	12	58345576	58345576	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:58345576C>T	uc001sqp.2	+	4	391	c.351C>T	c.(349-351)GCC>GCT	p.A117A		NM_033276	NP_150592	Q9Y6H3	ATP23_HUMAN	XRCC6 binding protein 1	117					double-strand break repair via nonhomologous end joining	DNA-dependent protein kinase-DNA ligase 4 complex	DNA-dependent protein kinase activity|metal ion binding|metalloendopeptidase activity			ovary(1)	1						ATAATCAGGCCCATATGAACA	0.418													30	499					0	0	0.002445	0	0
TBK1	29110	broad.mit.edu	37	12	64879238	64879238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:64879238C>T	uc001ssc.1	+	10	1255	c.1193C>T	c.(1192-1194)TCC>TTC	p.S398F		NM_013254	NP_037386	Q9UHD2	TBK1_HUMAN	TANK-binding kinase 1	398					I-kappaB kinase/NF-kappaB cascade|innate immune response|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|large_intestine(1)|breast(1)	5				GBM - Glioblastoma multiforme(28;0.0386)		ATTTCAGTTTCCCTCCCTAAA	0.284													11	18					0	0	0.000673	0	0
HELB	92797	broad.mit.edu	37	12	66703831	66703831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:66703831C>T	uc001sti.2	+	4	1151	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	375					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		GAAGAAACCTCCTTGGCATTT	0.438													50	568					0	0	0.003610	0	0
HELB	92797	broad.mit.edu	37	12	66707833	66707833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:66707833C>T	uc001sti.2	+	5	1776	c.1748C>T	c.(1747-1749)TCG>TTG	p.S583L	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_Intron	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	583					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		AAATTTTCTTCGGTTAGAGTT	0.378													36	311					0	0	0.004878	0	0
HELB	92797	broad.mit.edu	37	12	66709072	66709072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:66709072C>T	uc001sti.2	+	6	1937	c.1909C>T	c.(1909-1911)CTT>TTT	p.L637F	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	637					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		GCTGAAAGATCTTTTTGAGAC	0.353													23	259					0	0	0.003954	0	0
HELB	92797	broad.mit.edu	37	12	66717914	66717914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:66717914C>T	uc001sti.2	+	10	2477	c.2449C>T	c.(2449-2451)CCT>TCT	p.P817S	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	817					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		TGGTACGCTTCCTGATTTTGC	0.358													31	192					0	0	0.002445	0	0
GRIP1	23426	broad.mit.edu	37	12	66849287	66849287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:66849287G>A	uc001stk.2	-	10	1341	c.1100C>T	c.(1099-1101)TCC>TTC	p.S367F	GRIP1_uc010sta.1_Missense_Mutation_p.S311F|GRIP1_uc001stj.2_Missense_Mutation_p.S149F|GRIP1_uc001stl.1_Intron|GRIP1_uc001stm.2_Missense_Mutation_p.S367F	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	419					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CATGTTCAGGGAACTCAGGCT	0.507													48	267					0	0	0.003610	0	0
CAND1	55832	broad.mit.edu	37	12	67696296	67696296	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:67696296C>T	uc001stn.2	+	8	1631	c.1194C>T	c.(1192-1194)TAC>TAT	p.Y398Y	CAND1_uc001sto.2_Silent_p.Y76Y	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	398	HEAT 9.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		TTCACGCATACCTTTCTCTTT	0.423													16	167					0	0	0.004990	0	0
MDM1	56890	broad.mit.edu	37	12	68716926	68716926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:68716926G>A	uc001stz.2	-	5	864	c.728C>T	c.(727-729)CCA>CTA	p.P243L	MDM1_uc010stc.1_Missense_Mutation_p.P198L|MDM1_uc009zqv.1_5'UTR	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	243						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TTCTTTCACTGGAGATAAACC	0.328													63	47					0	0	0.003610	0	0
CPM	1368	broad.mit.edu	37	12	69264142	69264142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:69264142G>A	uc001sup.2	-	5	530	c.469C>T	c.(469-471)CCC>TCC	p.P157S	CPM_uc001sur.2_Missense_Mutation_p.P157S|CPM_uc001suq.2_Missense_Mutation_p.P157S	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	157					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			AAAGCATCGGGGAAATTTCGA	0.398													25	190					0	0	0.006320	0	0
CPSF6	11052	broad.mit.edu	37	12	69652685	69652685	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:69652685T>C	uc001sut.3	+	6	1120	c.1010T>C	c.(1009-1011)CTA>CCA	p.L337P	CPSF6_uc001suu.3_Missense_Mutation_p.L374P|CPSF6_uc010stk.1_5'UTR	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	337	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			CCCCTTACACTAGCTCCTCCT	0.642													310	95					0	0	0.003610	0	0
FRS2	10818	broad.mit.edu	37	12	69965190	69965190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:69965190C>T	uc001suy.2	+	8	898	c.388C>T	c.(388-390)CCT>TCT	p.P130S	FRS2_uc001suz.2_Missense_Mutation_p.P130S|FRS2_uc009zrj.2_Missense_Mutation_p.P130S|FRS2_uc009zrk.2_Missense_Mutation_p.P130S	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	130					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			ATTGGAAGTCCCTAGAACACC	0.343											OREG0021986	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	145					0	0	0.003080	0	0
BEST3	144453	broad.mit.edu	37	12	70048710	70048710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:70048710C>T	uc001svg.2	-	10	2211	c.1984G>A	c.(1984-1986)GAA>AAA	p.E662K	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.E449K|BEST3_uc010stm.1_Missense_Mutation_p.E556K	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	662	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TCCTCAGTTTCCTTGTTCAGC	0.453													15	139					0	0	0.004990	0	0
BEST3	144453	broad.mit.edu	37	12	70048913	70048913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:70048913C>T	uc001svg.2	-	10	2008	c.1781G>A	c.(1780-1782)GGA>GAA	p.G594E	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.G381E|BEST3_uc010stm.1_Missense_Mutation_p.G488E	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	594	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCCCAGGAATCCCGGAAGACT	0.507													120	30					0	0	0.003610	0	0
BEST3	144453	broad.mit.edu	37	12	70065290	70065290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:70065290C>T	uc001svg.2	-	9	1245	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	BEST3_uc001svd.1_Missense_Mutation_p.D340N|BEST3_uc001sve.1_RNA|BEST3_uc001svf.2_Missense_Mutation_p.D127N|BEST3_uc010stm.1_Missense_Mutation_p.D234N|BEST3_uc001svh.2_Missense_Mutation_p.D127N	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	340	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GCAGCAGAATCGTCCCAGTAA	0.428													21	190					0	0	0.001523	0	0
PTPRB	5787	broad.mit.edu	37	12	70960288	70960288	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:70960288C>T	uc001swb.3	-	13	3207	c.3177G>A	c.(3175-3177)AAG>AAA	p.K1059K	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Silent_p.K969K|PTPRB_uc001swc.3_Silent_p.K1277K|PTPRB_uc001swa.3_Silent_p.K1189K|PTPRB_uc001swd.3_Silent_p.K1276K|PTPRB_uc009zrr.1_Silent_p.K1156K	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1059	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TCTTGTATTTCTTGCCTGGTG	0.433													16	161					0	0	0.004990	0	0
TSPAN8	7103	broad.mit.edu	37	12	71526564	71526564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:71526564C>T	uc009zrt.1	-	6	647	c.485G>A	c.(484-486)GGA>GAA	p.G162E	TSPAN8_uc001swk.1_Missense_Mutation_p.G162E|TSPAN8_uc001swj.1_Missense_Mutation_p.G162E	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	162	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			AAAATTATTTCCCCAATCAGC	0.368													100	650					0	0	0.003610	0	0
LGR5	8549	broad.mit.edu	37	12	71960659	71960659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:71960659C>T	uc001swl.2	+	11	1085	c.1037C>T	c.(1036-1038)ACC>ATC	p.T346I	LGR5_uc001swm.2_Missense_Mutation_p.T322I|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	346	Extracellular (Potential).|LRR 12.					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CTTCCTCAAACCGTCTGCAAT	0.408													105	754					0	0	0.003610	0	0
TRHDE	29953	broad.mit.edu	37	12	73012702	73012702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:73012702G>A	uc001sxa.2	+	13	2248	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	740	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TATTCCTCTGGAGATTATCAG	0.388													89	60					0	0	0.003610	0	0
PHLDA1	22822	broad.mit.edu	37	12	76424916	76424916	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:76424916T>C	uc001sxu.2	-	1	641	c.606A>G	c.(604-606)CAA>CAG	p.Q202Q		NM_007350	NP_031376	Q8WV24	PHLA1_HUMAN	pleckstrin homology-like domain, family A,	202	PH.|Poly-Gln.				apoptosis	cytoplasmic vesicle membrane|nucleolus|plasma membrane	protein binding				0		Colorectal(145;0.09)				CGGgctgttgttgctgctgct	0.468													22	45					0	0	0.001523	0	0
PPFIA2	8499	broad.mit.edu	37	12	81719572	81719572	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:81719572G>A	uc001szo.1	-	22	2787	c.2626C>T	c.(2626-2628)CGA>TGA	p.R876*	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	802										ovary(3)|lung(2)|pancreas(1)	6						TTTAGTCTTCGATCCTTCTCA	0.393													25	4					0	0	0.004656	0	0
EPYC	1833	broad.mit.edu	37	12	91358040	91358040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:91358040G>A	uc001tbk.2	-	7	955	c.862C>T	c.(862-864)CGT>TGT	p.R288C		NM_004950	NP_004941	Q99645	EPYC_HUMAN	dermatan sulfate proteoglycan 3 precursor	288					female pregnancy	proteinaceous extracellular matrix	glycosaminoglycan binding			skin(1)	1						AGTGCCTTACGAATATAAGTC	0.363													11	16					0	0	0.002450	0	0
CLLU1OS	574016	broad.mit.edu	37	12	92816326	92816326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:92816326C>T	uc001tcb.1	-	2	141	c.139G>A	c.(139-141)GAA>AAA	p.E47K	CLLU1_uc001tcc.2_Intron|CLLU1_uc001tcd.2_Intron|CLLU1_uc001tce.1_Intron|CLLU1_uc001tcf.2_5'Flank	NM_001025232	NP_001020403	Q5K130	CLU1O_HUMAN	chronic lymphocytic leukemia up-regulated 1	47											0						CACTAACCTTCATTTCTACCA	0.184													10	10					0	0	0.000673	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93139298	93139298	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:93139298G>A	uc001tcj.2	+	5	476	c.246G>A	c.(244-246)CTG>CTA	p.L82L		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	82	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						CCTACTGCCTGAACTATTCAG	0.403													56	16					0	0	0.003610	0	0
NR2C1	7181	broad.mit.edu	37	12	95451609	95451609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:95451609G>A	uc001tdm.3	-	6	846	c.590C>T	c.(589-591)TCT>TTT	p.S197F	NR2C1_uc010suu.1_Missense_Mutation_p.S197F|NR2C1_uc001tdo.3_Missense_Mutation_p.S197F|NR2C1_uc001tdn.3_Missense_Mutation_p.S197F	NM_003297	NP_003288	P13056	NR2C1_HUMAN	nuclear receptor subfamily 2, group C, member 1	197					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	PML body	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1						ACAGTTGGAAGATTTTTCTCG	0.348													25	43					0	0	0.004656	0	0
ANO4	121601	broad.mit.edu	37	12	101520688	101520688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:101520688C>T	uc010svm.1	+	27	3280	c.2708C>T	c.(2707-2709)TCA>TTA	p.S903L	ANO4_uc001thw.2_Missense_Mutation_p.S868L|ANO4_uc001thx.2_Missense_Mutation_p.S903L|ANO4_uc001thy.2_Missense_Mutation_p.S423L	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	903	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CACCTCATTTCATATCTGATC	0.443										HNSCC(74;0.22)			21	5					0	0	0.002299	0	0
UTP20	27340	broad.mit.edu	37	12	101693480	101693480	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:101693480A>T	uc001tia.1	+	13	1607	c.1451A>T	c.(1450-1452)AAG>ATG	p.K484M		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	484					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						AAGCAGAAGAAGACTAGATCC	0.318													33	6					0	0	0.002445	0	0
MYBPC1	4604	broad.mit.edu	37	12	102069125	102069125	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:102069125C>T	uc001tii.2	+	25	2946	c.2844C>T	c.(2842-2844)GTC>GTT	p.V948V	MYBPC1_uc001tig.2_Silent_p.V955V|MYBPC1_uc010svq.1_Silent_p.V917V|MYBPC1_uc001tih.2_Silent_p.V955V|MYBPC1_uc001tij.2_Silent_p.V930V|MYBPC1_uc010svr.1_Silent_p.V930V|MYBPC1_uc010svs.1_Silent_p.V948V|MYBPC1_uc010svt.1_Silent_p.V918V|MYBPC1_uc010svu.1_Silent_p.V911V|MYBPC1_uc001tik.2_Silent_p.V904V|MYBPC1_uc001til.2_5'UTR|MYBPC1_uc001tim.2_5'UTR	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	948	Fibronectin type-III 3.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GAGAAAATGTCGCTCTCACAT	0.478													15	11					0	0	0.006122	0	0
STAB2	55576	broad.mit.edu	37	12	104077010	104077010	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:104077010C>T	uc001tjw.2	+	26	3019	c.2833C>T	c.(2833-2835)CGA>TGA	p.R945*		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	945	Extracellular (Potential).|EGF-like 9.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GAAAGGATTTCGAGGAAATGG	0.383													31	6					0	0	0.004289	0	0
SLC41A2	84102	broad.mit.edu	37	12	105282867	105282867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:105282867G>A	uc001tla.2	-	4	991	c.824C>T	c.(823-825)TCC>TTC	p.S275F		NM_032148	NP_115524	Q96JW4	S41A2_HUMAN	solute carrier family 41, member 2	275	Cytoplasmic.					integral to membrane|plasma membrane	magnesium ion transmembrane transporter activity			ovary(1)|skin(1)	2						CAGAAGTATGGAATGATCAAG	0.388													41	13					0	0	0.006999	0	0
TCP11L2	255394	broad.mit.edu	37	12	106715470	106715470	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:106715470C>T	uc001tln.2	+	5	795	c.621C>T	c.(619-621)ATC>ATT	p.I207I	TCP11L2_uc001tll.2_Silent_p.I207I|TCP11L2_uc001tlm.2_Silent_p.I207I	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	207										ovary(3)	3						CTGGCAACATCGTGGAGGTGC	0.463													56	9					0	0	0.003610	0	0
WSCD2	9671	broad.mit.edu	37	12	108634193	108634193	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:108634193A>T	uc001tms.2	+	8	1961	c.1217A>T	c.(1216-1218)AAA>ATA	p.K406I	WSCD2_uc001tmt.2_Missense_Mutation_p.K406I|WSCD2_uc001tmu.2_Missense_Mutation_p.K154I	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	406						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						AGCGGCCAGAAAGAGATCGAG	0.602													86	25					0	0	0.003610	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686096	108686096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:108686096C>T	uc009zuw.2	-	3	835	c.644G>A	c.(643-645)AGC>AAC	p.S215N	CMKLR1_uc001tmw.2_Missense_Mutation_p.S215N|CMKLR1_uc001tmv.2_Missense_Mutation_p.S213N|CMKLR1_uc009zuv.2_Missense_Mutation_p.S215N	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	215	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						CATGTGCCGGCTATACCCCAC	0.557													26	9					0	0	0.005443	0	0
UNG	7374	broad.mit.edu	37	12	109537051	109537051	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:109537051C>T	uc001tnz.1	+	3	467	c.397C>T	c.(397-399)CAA>TAA	p.Q133*	UNG_uc001toa.1_Nonsense_Mutation_p.Q124*	NM_080911	NP_550433	P13051	UNG_HUMAN	uracil-DNA glycosylase isoform UNG2	133					base-excision repair|interspecies interaction between organisms	mitochondrion|nucleus	protein binding|uracil DNA N-glycosylase activity			lung(1)|central_nervous_system(1)	2						ACCCCCACACCAAGTCTTCAC	0.343								BER_DNA_glycosylases	Immune_Deficiency_with_Hyper-IgM				20	17					0	0	0.001216	0	0
NAA25	80018	broad.mit.edu	37	12	112509802	112509802	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:112509802C>T	uc001ttm.2	-	10	953	c.933G>A	c.(931-933)ACG>ACA	p.T311T	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.T283T|NAA25_uc009zwa.1_Silent_p.T311T	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	311						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TAGATTCTTCCGTTATCCGAT	0.388													7	26					0	0	0.001984	0	0
C12orf51	283450	broad.mit.edu	37	12	112744000	112744000	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:112744000G>A	uc009zwc.2	-	1	39	c.21C>T	c.(19-21)CCC>CCT	p.P7P		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TGCTGCCAATGGGGAGGTGAT	0.498													5	5					0	0	0.000602	0	0
OAS3	4940	broad.mit.edu	37	12	113384623	113384623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:113384623G>A	uc001tug.2	+	4	799	c.712G>A	c.(712-714)GAG>AAG	p.E238K		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	238	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						CTTCGCCTGGGAGCAGGGCTG	0.592													16	1					0	0	0.003163	0	0
OAS3	4940	broad.mit.edu	37	12	113405759	113405759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:113405759G>A	uc001tug.2	+	14	2971	c.2884G>A	c.(2884-2886)GGG>AGG	p.G962R		NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	962	OAS domain 3.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						GATCTCCAAGGGGAGAGGCTC	0.532													20	8					0	0	0.001216	0	0
IQCD	115811	broad.mit.edu	37	12	113633434	113633434	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:113633434C>T	uc001tuu.2	-	3	1162	c.990G>A	c.(988-990)AAG>AAA	p.K330K		NM_138451	NP_612460	Q96DY2	IQCD_HUMAN	IQ motif containing D	Error:Variant_position_missing_in_Q96DY2_after_alignment										ovary(1)	1						tctccttgtcctttgctttgc	0.378													17	33					0	0	0.004990	0	0
MED13L	23389	broad.mit.edu	37	12	116429486	116429486	+	Silent	SNP	G	A	A	rs145072799		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:116429486G>A	uc001tvw.2	-	17	3328	c.3273C>T	c.(3271-3273)CCC>CCT	p.P1091P		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1091					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CAGAGTTGAGGGGCCGTGTAG	0.547													8	9					0	0	0.004482	0	0
RNFT2	84900	broad.mit.edu	37	12	117217001	117217001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:117217001C>T	uc009zwn.2	+	7	963	c.730C>T	c.(730-732)CTC>TTC	p.L244F	RNFT2_uc001twb.3_Missense_Mutation_p.L244F|RNFT2_uc001twa.3_Missense_Mutation_p.L154F|RNFT2_uc001twc.3_5'UTR	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	244	Extracellular (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		TCCCCCCAGCCTCATATTCCT	0.507													94	19					0	0	0.003610	0	0
VSIG10	54621	broad.mit.edu	37	12	118520187	118520187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:118520187G>A	uc001tws.2	-	3	743	c.409C>T	c.(409-411)CCC>TCC	p.P137S		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	137	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						GTGCCGTTGGGGAGTGTGCCG	0.597													33	7					0	0	0.002445	0	0
SIRT4	23409	broad.mit.edu	37	12	120741694	120741694	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:120741694C>T	uc001tyc.2	+	2	350	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_012240	NP_036372	Q9Y6E7	SIRT4_HUMAN	sirtuin 4	110	Deacetylase sirtuin-type.				chromatin silencing|negative regulation of insulin secretion|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGAGAAACTTCGTAGGCTGGC	0.572													11	8					0	0	0.000978	0	0
MSI1	4440	broad.mit.edu	37	12	120784124	120784124	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:120784124G>A	uc001tye.1	-	13	925	c.861C>T	c.(859-861)GGC>GGT	p.G287G		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	287					nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGGGTGAGAGCCTGGCAACC	0.687													5	1					0	0	0.001168	0	0
HNF1A	6927	broad.mit.edu	37	12	121432128	121432128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:121432128G>A	uc001tzg.2	+	4	898	c.875G>A	c.(874-876)GGG>GAG	p.G292E	HNF1A_uc001tze.1_Missense_Mutation_p.G292E|HNF1A_uc001tzf.2_Missense_Mutation_p.G292E|HNF1A_uc010szn.1_Missense_Mutation_p.G292E	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	292					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding	p.G292fs*25(14)|p.P291fs*47(2)		liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCCCCCCCAGGGCCAGGCCCG	0.662									Hepatic_Adenoma_Familial_Clustering_of				36	70					0	0	0.006230	0	0
HNF1A	6927	broad.mit.edu	37	12	121434148	121434148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:121434148C>T	uc001tzg.2	+	5	1062	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S	HNF1A_uc001tze.1_Missense_Mutation_p.P347S|HNF1A_uc001tzf.2_Missense_Mutation_p.P347S|HNF1A_uc010szn.1_Missense_Mutation_p.P347S	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	347					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AGTGTCTACACCCCTCCACCA	0.592									Hepatic_Adenoma_Familial_Clustering_of				241	83					0	0	0.003610	0	0
CAMKK2	10645	broad.mit.edu	37	12	121682970	121682970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:121682970G>A	uc001tzu.2	-	15	1650	c.1526C>T	c.(1525-1527)TCA>TTA	p.S509L	CAMKK2_uc001tzt.2_Missense_Mutation_p.S509L|CAMKK2_uc001tzv.2_Missense_Mutation_p.S509L|CAMKK2_uc001tzw.2_Missense_Mutation_p.S466L|CAMKK2_uc001tzx.2_Missense_Mutation_p.S509L|CAMKK2_uc001tzy.2_Missense_Mutation_p.S466L|CAMKK2_uc001tzz.1_Missense_Mutation_p.S296L|CAMKK2_uc001uaa.1_Missense_Mutation_p.S509L|CAMKK2_uc001uab.2_Missense_Mutation_p.S509L|CAMKK2_uc001uac.2_Missense_Mutation_p.S466L	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	509					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CGCTGACAGTGAGCGTTCCTC	0.617													66	147					0	0	0.003610	0	0
KDM2B	84678	broad.mit.edu	37	12	121877844	121877844	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:121877844G>A	uc001uat.2	-	22	3749	c.3645C>T	c.(3643-3645)ATC>ATT	p.I1215I	KDM2B_uc001uaq.2_Silent_p.I655I|KDM2B_uc010szy.1_Silent_p.I655I|KDM2B_uc001uar.2_Silent_p.I806I|KDM2B_uc001uas.2_Silent_p.I1146I|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Silent_p.I463I|KDM2B_uc010szx.1_Silent_p.I463I|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1215					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GCAGCTCCACGATGTTCCGGA	0.612													5	7					0	0	0.000602	0	0
B3GNT4	79369	broad.mit.edu	37	12	122691861	122691861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:122691861G>A	uc001ubx.2	+	3	1281	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	B3GNT4_uc001uby.2_Missense_Mutation_p.E330K	NM_030765	NP_110392	Q9C0J1	B3GN4_HUMAN	UDP-GlcNAc:betaGal	355	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000297)|Epithelial(86;0.000497)|BRCA - Breast invasive adenocarcinoma(302;0.222)		CAGCCCCCTCGAGATGTGGAC	0.627													10	13					0	0	0.000978	0	0
CCDC62	84660	broad.mit.edu	37	12	123285920	123285920	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:123285920C>T	uc001udc.2	+	9	1372	c.1227C>T	c.(1225-1227)CTC>CTT	p.L409L	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Silent_p.L409L|CCDC62_uc001ude.2_Silent_p.L170L	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	409						cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		AACACAACCTCCCTTGGTCTC	0.418													12	5					0	0	0.003163	0	0
NCOR2	9612	broad.mit.edu	37	12	124857021	124857021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:124857021G>A	uc010tba.1	-	20	2471	c.2354C>T	c.(2353-2355)CCA>CTA	p.P785L	NCOR2_uc010tay.1_Missense_Mutation_p.P785L|NCOR2_uc010taz.1_Missense_Mutation_p.P768L|NCOR2_uc010tbb.1_Missense_Mutation_p.P785L|NCOR2_uc010tbc.1_Missense_Mutation_p.P767L|NCOR2_uc001ugj.1_Missense_Mutation_p.P785L	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	785	Pro-rich.				cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CTCCGGTGGTGGGGTGGGTGG	0.736													6	10					0	0	0.001168	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834716	125834716	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:125834716G>A	uc001uhe.1	+	2	779	c.771G>A	c.(769-771)GAG>GAA	p.E257E		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	257	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CAGCCCGAGAGAGGATTGGGA	0.567													59	13					0	0	0.003610	0	0
GLT1D1	144423	broad.mit.edu	37	12	129429874	129429874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:129429874G>A	uc010tbh.1	+	10	643	c.634G>A	c.(634-636)GAT>AAT	p.D212N	GLT1D1_uc001uhx.1_Missense_Mutation_p.D127N|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	207					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		TTTTCAGGTCGATCCAGTGTT	0.572													36	9					0	0	0.006230	0	0
EP400	57634	broad.mit.edu	37	12	132474600	132474601	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:132474600_132474601CC>AT	uc001ujn.2	+	7	2536_2537	c.2501_2502CC>AT	c.(2500-2502)GCC>GAT	p.A834D	EP400_uc001ujl.2_Missense_Mutation_p.A833D|EP400_uc001ujm.2_Missense_Mutation_p.A834D|EP400_uc001ujj.1_Missense_Mutation_p.A797D|EP400_uc001ujk.2_Missense_Mutation_p.A870D	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	870	HSA.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		AGGCGGATAGCCGCCTCCACGG	0.559													26	47					0	0	0.004672	0	0
DDX51	317781	broad.mit.edu	37	12	132627287	132627287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:132627287G>A	uc001ujy.3	-	3	695	c.656C>T	c.(655-657)TCG>TTG	p.S219L	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	219					rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		AAAGTAGGACGAGATGCCGTG	0.622													16	25					0	0	0.004990	0	0
CHFR	55743	broad.mit.edu	37	12	133438112	133438112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:133438112G>A	uc001ulf.2	-	7	812	c.728C>T	c.(727-729)TCG>TTG	p.S243L	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.S231L|CHFR_uc010tbs.1_Missense_Mutation_p.S243L|CHFR_uc001uld.2_Missense_Mutation_p.S202L|CHFR_uc010tbt.1_Missense_Mutation_p.S151L	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	243					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		TTCCAACGACGAAAAGGACGC	0.537													19	30					0	0	0.001523	0	0
LOC284232	284232	broad.mit.edu	37	13	19412151	19412151	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:19412151G>A	uc010tcj.1	-	1		c.33959C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AACCTCTTCTGGAAATTCTTC	0.498													12	12					0	0	0.000978	0	0
LOC284232	284232	broad.mit.edu	37	13	19415604	19415604	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:19415604G>A	uc010tcj.1	-	1		c.30506C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ctccagcttgggcaacaagag	0.085													3	9					0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19428848	19428848	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:19428848G>A	uc010tcj.1	-	1		c.17262C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						caaagtgctgggattacaggt	0.109													5	7					0	0	0.000602	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751162	19751162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:19751162C>T	uc009zzj.2	-	4	1010	c.961G>A	c.(961-963)GGG>AGG	p.G321R		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	321					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		ACCACATCCCCCCTGTACAAC	0.552													37	34					0	0	0.005524	0	0
TPTE2	93492	broad.mit.edu	37	13	20024470	20024470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:20024470C>T	uc001umd.2	-	13	1028	c.817G>A	c.(817-819)GAT>AAT	p.D273N	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.D162N|TPTE2_uc001ume.2_Missense_Mutation_p.D196N|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	273	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TGCTTAGGATCATAAGCTCTT	0.299													35	60					0	0	0.006230	0	0
PSPC1	55269	broad.mit.edu	37	13	20279827	20279827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:20279827G>A	uc001uml.2	-	8	1547	c.1361C>T	c.(1360-1362)CCA>CTA	p.P454L	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	454	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TGGCATCATTGGAGTTCCCAT	0.413													10	27					0	0	0.000978	0	0
SACS	26278	broad.mit.edu	37	13	23905533	23905533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:23905533G>A	uc001uon.2	-	10	13071	c.12482C>T	c.(12481-12483)CCT>CTT	p.P4161L	SACS_uc001uoo.2_Missense_Mutation_p.P4014L|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	4161					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AATTTCAGCAGGAATTGGTGT	0.413													33	88					0	0	0.003755	0	0
SACS	26278	broad.mit.edu	37	13	23907771	23907771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:23907771G>A	uc001uon.2	-	10	10833	c.10244C>T	c.(10243-10245)TCC>TTC	p.S3415F	SACS_uc001uoo.2_Missense_Mutation_p.S3268F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3415					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		GCCACTGATGGATTTATAGCA	0.363													27	50					0	0	0.003954	0	0
SACS	26278	broad.mit.edu	37	13	23915461	23915461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:23915461G>A	uc001uon.2	-	10	3143	c.2554C>T	c.(2554-2556)CTT>TTT	p.L852F	SACS_uc001uoo.2_Missense_Mutation_p.L705F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	852					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AATTTTTTAAGGACAAACCCT	0.348													12	36					0	0	0.001368	0	0
SACS	26278	broad.mit.edu	37	13	23928006	23928006	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:23928006G>A	uc001uon.2	-	9	2692	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	SACS_uc001uoo.2_Silent_p.F554F|SACS_uc001uop.1_Silent_p.F488F|SACS_uc001uoq.1_Silent_p.F554F	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	701					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CAAGACTTGGGAAAAGGGACC	0.368													19	28					0	0	0.002299	0	0
PABPC3	5042	broad.mit.edu	37	13	25671363	25671363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:25671363C>T	uc001upy.2	+	1	1088	c.1027C>T	c.(1027-1029)CCA>TCA	p.P343S		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	343	RRM 4.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TTTCTCCTCCCCAGAAGAAGC	0.463													32	50					0	0	0.002096	0	0
CDK8	1024	broad.mit.edu	37	13	26975749	26975749	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:26975749C>T	uc001uqr.1	+	12	1283	c.1257C>T	c.(1255-1257)ACC>ACT	p.T419T	CDK8_uc001uqs.1_Silent_p.T418T|CDK8_uc001uqt.1_Silent_p.T246T	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	419					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		TTATCATGACCTCAGACTATC	0.428													17	39					0	0	0.001523	0	0
WASF3	10810	broad.mit.edu	37	13	27256995	27256995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:27256995C>T	uc001uqv.2	+	9	1460	c.1235C>T	c.(1234-1236)TCT>TTT	p.S412F	WASF3_uc001uqw.2_Missense_Mutation_p.S409F	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	412					actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		GGTCCCGGGTCTTCTCTTTCG	0.687													27	41					0	0	0.007291	0	0
LNX2	222484	broad.mit.edu	37	13	28155802	28155802	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:28155802C>T	uc001url.3	-	2	348	c.39G>A	c.(37-39)CAG>CAA	p.Q13Q	LNX2_uc001urm.1_Silent_p.Q13Q	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	13							zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		AGGAGGAGGTCTGTTCCACAG	0.423													20	17					0	0	0.002780	0	0
PDX1	3651	broad.mit.edu	37	13	28498598	28498598	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:28498598G>A	uc001urt.2	+	2	720	c.612G>A	c.(610-612)GAG>GAA	p.E204E		NM_000209	NP_000200	P52945	PDX1_HUMAN	pancreatic and duodenal homeobox 1	204	Homeobox.				detection of glucose|generation of precursor metabolites and energy|insulin secretion|nitric oxide mediated signal transduction|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|type B pancreatic cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0	all_cancers(110;0.175)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0402)|all cancers(112;0.0404)|OV - Ovarian serous cystadenocarcinoma(117;0.197)		GGAAAAAGGAGGAGGACAAGA	0.647													62	144					0	0	0.003610	0	0
ATP5EP2	432369	broad.mit.edu	37	13	28519381	28519381	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:28519381C>T	uc001uru.2	+	1		c.39C>T				NR_002162				Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 (ATP5EP2), transcript variant 6, non-coding RNA.											ovary(1)	1						CCGACGCGCTCCGCTTTCGCT	0.383													4	4					0	0	0.000248	0	0
SLC46A3	283537	broad.mit.edu	37	13	29287571	29287571	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:29287571G>A	uc001usi.2	-	2	1276	c.306C>T	c.(304-306)TTC>TTT	p.F102F	SLC46A3_uc001usg.2_Silent_p.F27F|SLC46A3_uc001usj.2_Silent_p.F102F|SLC46A3_uc001ush.2_Silent_p.F102F|SLC46A3_uc001usk.2_Silent_p.F27F	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	102	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		AAATCATAGGGAATTTTCGTC	0.403													8	15					0	0	0.003080	0	0
MTUS2	23281	broad.mit.edu	37	13	29600443	29600443	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:29600443C>T	uc001usl.3	+	1	1696	c.1638C>T	c.(1636-1638)CTC>CTT	p.L546L		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	536						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CAGCACCCCTCCACCCAGAGA	0.493													18	31					0	0	0.004990	0	0
C13orf33	84935	broad.mit.edu	37	13	31495964	31495964	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:31495964G>A	uc001uth.3	+	4	1109	c.768G>A	c.(766-768)AAG>AAA	p.K256K	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	256											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		CTGACCGAAAGTTCAGTGTAA	0.358													7	13					0	0	0.004482	0	0
RXFP2	122042	broad.mit.edu	37	13	32376299	32376299	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:32376299G>A	uc001utt.2	+	18	2093	c.2022G>A	c.(2020-2022)TGG>TGA	p.W674*	RXFP2_uc010aba.2_Nonsense_Mutation_p.W633*	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	674	Helical; Name=7; (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		TGACTTCCTGGATAGTGATTT	0.343													22	33					0	0	0.005443	0	0
FRY	10129	broad.mit.edu	37	13	32735336	32735336	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:32735336C>T	uc001utx.2	+	17	2336	c.1840C>T	c.(1840-1842)CGA>TGA	p.R614*	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	614					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TGCTATTCCTCGACTGCTTCC	0.368													21	38					0	0	0.002299	0	0
FRY	10129	broad.mit.edu	37	13	32841337	32841337	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:32841337C>T	uc001utx.2	+	55	8473	c.7977C>T	c.(7975-7977)CCC>CCT	p.P2659P	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Silent_p.P214P|FRY_uc001utz.2_Silent_p.P184P|FRY_uc010tdx.1_Silent_p.P29P	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2659					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GAGTCTCTCCCCCTCCCTCGC	0.522													28	53					0	0	0.002096	0	0
FRY	10129	broad.mit.edu	37	13	32841341	32841341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:32841341C>T	uc001utx.2	+	55	8477	c.7981C>T	c.(7981-7983)CCC>TCC	p.P2661S	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Missense_Mutation_p.P216S|FRY_uc001utz.2_Missense_Mutation_p.P186S|FRY_uc010tdx.1_Missense_Mutation_p.P31S	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTCTCCCCCTCCCTCGCCCTT	0.527													27	53					0	0	0.001512	0	0
PDS5B	23047	broad.mit.edu	37	13	33273881	33273881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:33273881C>T	uc010abf.2	+	16	1773	c.1615C>T	c.(1615-1617)CCT>TCT	p.P539S	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	539					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TTTACCTGATCCTGGTAAGGC	0.254													6	13					0	0	0.001168	0	0
NBEA	26960	broad.mit.edu	37	13	35756549	35756549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:35756549C>T	uc001uvb.2	+	29	4921	c.4715C>T	c.(4714-4716)TCG>TTG	p.S1572L	NBEA_uc010abi.2_Missense_Mutation_p.S260L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1572						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TACTTCATTTCGGTTCTGATG	0.373													20	42					0	0	0.007413	0	0
NBEA	26960	broad.mit.edu	37	13	36124641	36124641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:36124641G>A	uc001uvb.2	+	42	6819	c.6613G>A	c.(6613-6615)GGA>AGA	p.G2205R	NBEA_uc010abi.2_Missense_Mutation_p.G861R|NBEA_uc010tee.1_5'UTR|NBEA_uc010tef.1_5'UTR|NBEA_uc010teg.1_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2205						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGGACTTCACGGAAAATGGAT	0.373													10	26					0	0	0.001368	0	0
NBEA	26960	broad.mit.edu	37	13	36167498	36167498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:36167498G>A	uc001uvb.2	+	47	7416	c.7210G>A	c.(7210-7212)GAT>AAT	p.D2404N	NBEA_uc010abi.2_Missense_Mutation_p.D1060N|NBEA_uc010tee.1_Missense_Mutation_p.D197N|NBEA_uc010tef.1_Missense_Mutation_p.D197N|NBEA_uc010teg.1_Missense_Mutation_p.D197N|NBEA_uc001uvd.2_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2404	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CAATGCAAATGATGGAAAATT	0.398													24	33					0	0	0.004656	0	0
C13orf36	400120	broad.mit.edu	37	13	37269294	37269294	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:37269294C>T	uc001uvt.3	+	2	525	c.79C>T	c.(79-81)CTG>TTG	p.L27L		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	27						integral to membrane				skin(1)	1						TCCCACATCCCTGTCCACGTC	0.473													46	60					0	0	0.003610	0	0
POSTN	10631	broad.mit.edu	37	13	38171377	38171377	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:38171377C>T	uc001uwo.3	-	2	280	c.162G>A	c.(160-162)AAG>AAA	p.K54K	POSTN_uc001uwp.3_Silent_p.K54K|POSTN_uc001uwr.2_Silent_p.K54K|POSTN_uc001uwq.2_Silent_p.K54K|POSTN_uc010teu.1_Silent_p.K54K|POSTN_uc010tev.1_Silent_p.K54K|POSTN_uc010tew.1_Silent_p.K54K|POSTN_uc010tex.1_5'UTR	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	54	EMI.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TGAAGTATTTCTTTTTGGTGC	0.353													8	20					0	0	0.006214	0	0
TRPC4	7223	broad.mit.edu	37	13	38211653	38211653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:38211653G>A	uc001uws.2	-	11	2556	c.2321C>T	c.(2320-2322)TCG>TTG	p.S774L	TRPC4_uc010abv.2_Missense_Mutation_p.S354L|TRPC4_uc001uwt.2_Missense_Mutation_p.S774L|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.S601L|TRPC4_uc010abx.2_Missense_Mutation_p.S779L|TRPC4_uc010aby.2_Missense_Mutation_p.S709L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	774	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TGAGTCTGCCGAATTTGAAGA	0.408													16	32					0	0	0.007413	0	0
TRPC4	7223	broad.mit.edu	37	13	38213432	38213432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:38213432C>T	uc001uws.2	-	9	2319	c.2084G>A	c.(2083-2085)CGA>CAA	p.R695Q	TRPC4_uc010abv.2_Missense_Mutation_p.R275Q|TRPC4_uc001uwt.2_Missense_Mutation_p.R695Q|TRPC4_uc010tey.1_Missense_Mutation_p.R695Q|TRPC4_uc010abw.2_Missense_Mutation_p.R522Q|TRPC4_uc010abx.2_Missense_Mutation_p.R700Q|TRPC4_uc010aby.2_Missense_Mutation_p.R630Q	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	695	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ATCAGCAGCTCGCCTCTGAAA	0.308													20	34					0	0	0.004656	0	0
TRPC4	7223	broad.mit.edu	37	13	38320211	38320211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:38320211C>T	uc001uws.2	-	3	995	c.760G>A	c.(760-762)GAC>AAC	p.D254N	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.D254N|TRPC4_uc010tey.1_Missense_Mutation_p.D254N|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.D254N|TRPC4_uc010aby.2_Missense_Mutation_p.D254N	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	254	Potential.|Cytoplasmic (Potential).|Multimerization domain (By similarity).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		TCCAGTAGGTCCTTAGCAAAT	0.413													29	46					0	0	0.002096	0	0
FREM2	341640	broad.mit.edu	37	13	39263123	39263123	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:39263123C>T	uc001uwv.2	+	1	1951	c.1642C>T	c.(1642-1644)CTG>TTG	p.L548L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	548	CSPG 3.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GGTACAGTTTCTGTTCCCCAT	0.592													5	7					0	0	0.000602	0	0
FREM2	341640	broad.mit.edu	37	13	39451349	39451349	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:39451349C>T	uc001uwv.2	+	21	8949	c.8640C>T	c.(8638-8640)TTC>TTT	p.F2880F		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2880	Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCATGGGATTCGGGCAAGAGA	0.438													50	87					0	0	0.003610	0	0
LHFP	10186	broad.mit.edu	37	13	40175210	40175211	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:40175210_40175211CC>TT	uc001uxf.2	-	2	654_655	c.143_144GG>AA	c.(142-144)CGG>CAA	p.R48Q		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	48						integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		ATGAGCACCTCCGGAAGGTACC	0.564			T	HMGA2	lipoma								29	96					0	0	0.004672	0	0
KBTBD7	84078	broad.mit.edu	37	13	41767908	41767908	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:41767908G>A	uc001uxw.1	-	1	795	c.486C>T	c.(484-486)TCC>TCT	p.S162S	uc001uxv.1_Intron	NM_032138	NP_115514	Q8WVZ9	KBTB7_HUMAN	kelch repeat and BTB (POZ) domain containing 7	162							protein binding			ovary(1)	1		Lung NSC(96;0.000105)|Breast(139;0.00715)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.21e-09)|Epithelial(112;6.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000196)|GBM - Glioblastoma multiforme(144;0.000857)|BRCA - Breast invasive adenocarcinoma(63;0.0669)		GGGCTAAGAAGGAGGCACAGG	0.582													21	30					0	0	0.003330	0	0
C13orf15	28984	broad.mit.edu	37	13	42041041	42041041	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:42041041C>T	uc001uyi.2	+	3	620	c.318C>T	c.(316-318)CTC>CTT	p.L106L		NM_014059	NP_054778	Q9H4X1	RGC32_HUMAN	response gene to complement 32	106	Ser/Thr-rich.				cell cycle|regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus					0		Lung NSC(96;7.5e-06)|Prostate(109;0.0181)|Breast(139;0.0204)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;8.62e-09)|Epithelial(112;8.99e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000504)|GBM - Glioblastoma multiforme(144;0.000909)|BRCA - Breast invasive adenocarcinoma(63;0.0679)		CAGCTCTTCTCTCTGCCACTG	0.413													37	51					0	0	0.003610	0	0
ZC3H13	23091	broad.mit.edu	37	13	46543368	46543368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:46543368G>A	uc010tfw.1	-	13	3317	c.3311C>T	c.(3310-3312)CCA>CTA	p.P1104L	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Missense_Mutation_p.P1104L|ZC3H13_uc001vat.1_Missense_Mutation_p.P1104L	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1104							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		cacagGCGGTGGAGGAGGAAG	0.299													8	26					0	0	0.003080	0	0
LCP1	3936	broad.mit.edu	37	13	46725188	46725188	+	Silent	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:46725188A>C	uc001vaz.3	-	8	891	c.765T>G	c.(763-765)GGT>GGG	p.G255G	LCP1_uc001vba.3_Silent_p.G255G	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	255	Actin-binding 1.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		CCAGGCTCTCACCTTCTCTCA	0.453			T	BCL6	NHL 								14	19					0	0	0.004990	0	0
MED4	29079	broad.mit.edu	37	13	48669172	48669172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:48669172C>T	uc001vby.1	-	1	69	c.43G>A	c.(43-45)GGA>AGA	p.G15R	MED4_uc010tge.1_Missense_Mutation_p.G15R|MED4_uc010tgf.1_Intron	NM_014166	NP_054885	Q9NPJ6	MED4_HUMAN	mediator complex subunit 4	15					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1		all_cancers(8;2.93e-25)|all_epithelial(8;4.38e-13)|all_lung(13;7.37e-06)|all_hematologic(8;8.61e-05)|Breast(56;0.000141)|Lung NSC(96;0.000518)|Prostate(109;0.00132)|Acute lymphoblastic leukemia(8;0.00559)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;5.18e-07)		AAACCGCCTCCCAGCCGCTCC	0.647											OREG0022406	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	13					0	0	0.000602	0	0
SETDB2	83852	broad.mit.edu	37	13	50042072	50042072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:50042072C>T	uc001vcz.2	+	6	1223	c.317C>T	c.(316-318)TCC>TTC	p.S106F	SETDB2_uc010adg.2_Missense_Mutation_p.S82F|SETDB2_uc001vcy.3_Missense_Mutation_p.S94F|SETDB2_uc010adh.2_Missense_Mutation_p.S94F|SETDB2_uc001vda.2_Missense_Mutation_p.S94F	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	106					cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TGTGAAAACTCCTTTCCAGAA	0.328													4	20					0	0	0.000248	0	0
LOC220429	220429	broad.mit.edu	37	13	50465840	50465840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:50465840G>A	uc001vdk.2	+	1	1296	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						CACATATTTTGAAAGTGAGAA	0.318													12	25					0	0	0.001368	0	0
SERPINE3	647174	broad.mit.edu	37	13	51935993	51935993	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:51935993C>G	uc001vfh.2	+	7	1195	c.1135C>G	c.(1135-1137)CGG>GGG	p.R379G	SERPINE3_uc010tgp.1_Missense_Mutation_p.R379G|INTS6_uc001vfi.2_3'UTR|INTS6_uc001vfj.2_3'UTR|INTS6_uc001vfk.2_3'UTR|INTS6_uc001vfl.2_3'UTR	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	379					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						TAAAGCAGATCGGCCATTCAT	0.358													8	19					0	0	0.004482	0	0
ATP7B	540	broad.mit.edu	37	13	52548897	52548897	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:52548897G>A	uc001vfw.2	-	2	616	c.459C>T	c.(457-459)ACC>ACT	p.T153T	ATP7B_uc010adv.2_Silent_p.T153T|ATP7B_uc001vfx.2_Silent_p.T153T|ATP7B_uc001vfy.2_Silent_p.T153T|ATP7B_uc010tgt.1_Silent_p.T153T|ATP7B_uc010tgu.1_Silent_p.T153T|ATP7B_uc010tgv.1_Silent_p.T153T|ATP7B_uc010tgw.1_Silent_p.T121T	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	153	HMA 2.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		AGGACTGGCAGGTCATGCCCT	0.582									Wilson_disease				10	28					0	0	0.000673	0	0
UTP14C	9724	broad.mit.edu	37	13	52604614	52604614	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:52604614C>T	uc001vgb.2	+	2	2209	c.1674C>T	c.(1672-1674)AAC>AAT	p.N558N	UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	558					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		AACTGATCAACCTACAGAACT	0.502													25	35					0	0	0.003330	0	0
NEK5	341676	broad.mit.edu	37	13	52667313	52667313	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:52667313T>C	uc001vge.2	-	13	1225	c.1085A>G	c.(1084-1086)TAT>TGT	p.Y362C	NEK5_uc001vgf.2_Missense_Mutation_p.Y362C	NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	362							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		AAGTTGAGCATAATAATAATC	0.378													22	32					0	0	0.003330	0	0
PCDH8	5100	broad.mit.edu	37	13	53418792	53418792	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:53418792C>A	uc001vhi.2	-	3	3319	c.3116G>T	c.(3115-3117)GGG>GTG	p.G1039V	PCDH8_uc001vhj.2_Missense_Mutation_p.G942V	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	1039	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TGGGAGCCTCCCTGGACGGGG	0.582													29	46					1.06647e-15	1.55393e-15	0.003755	1	0
DIAPH3	81624	broad.mit.edu	37	13	60565337	60565337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:60565337G>A	uc001vht.2	-	12	1535	c.1316C>T	c.(1315-1317)TCT>TTT	p.S439F	DIAPH3_uc001vhu.2_Missense_Mutation_p.S176F|DIAPH3_uc001vhv.2_Missense_Mutation_p.S17F	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	439	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		CTGAAGAATAGAAATAAAATA	0.294													7	38					0	0	0.001984	0	0
PCDH20	64881	broad.mit.edu	37	13	61986204	61986204	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:61986204G>A	uc001vid.3	-	2	2392	c.2028C>T	c.(2026-2028)CTC>CTT	p.L676L	PCDH20_uc010thj.1_Silent_p.L676L	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	649	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TCACCACAGAGAGGGCGACCC	0.448													26	20					0	0	0.003330	0	0
LOC647288	647288	broad.mit.edu	37	13	75814067	75814067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:75814067G>A	uc010ths.1	-	1	451	c.410C>T	c.(409-411)TCC>TTC	p.S137F		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						TTCAGAATTGGACCTGTTCAG	0.418													44	95					0	0	0.003610	0	0
TBC1D4	9882	broad.mit.edu	37	13	75861030	75861030	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:75861030G>A	uc001vjl.1	-	21	4142	c.3795C>T	c.(3793-3795)CTC>CTT	p.L1265L	TBC1D4_uc010tht.1_Silent_p.L475L|TBC1D4_uc010thu.1_Silent_p.L422L|TBC1D4_uc010aer.2_Silent_p.L1257L|TBC1D4_uc010aes.2_Silent_p.L1202L	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1265						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GCAGCTTCCGGAGTTGCTCCA	0.448													26	24					0	0	0.004656	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370118	86370118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:86370118G>A	uc001vll.1	-	2	985	c.526C>T	c.(526-528)CCT>TCT	p.P176S	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	176	LRR 4.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		ATGTTTGGAGGAAGACTCTCA	0.373													19	49					0	0	0.001216	0	0
GPC5	2262	broad.mit.edu	37	13	93518683	93518683	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:93518683G>A	uc010tif.1	+	8	2076	c.1710G>A	c.(1708-1710)GGG>GGA	p.G570G		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	570						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TACTTCCCGGGATTTGGTAAC	0.433													29	34					0	0	0.004289	0	0
ABCC4	10257	broad.mit.edu	37	13	95735479	95735479	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:95735479G>A	uc001vmd.3	-	21	2720	c.2601C>T	c.(2599-2601)CCC>CCT	p.P867P	ABCC4_uc010afk.2_Silent_p.P820P	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	867	Helical; (Potential).|ABC transmembrane type-1 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	GGGGAACCAAGGGTATTGCGA	0.438													8	19					0	0	0.003080	0	0
DZIP1	22873	broad.mit.edu	37	13	96251628	96251628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:96251628C>T	uc001vmk.2	-	15	2380	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K	DZIP1_uc001vmj.2_5'UTR|DZIP1_uc001vml.2_Missense_Mutation_p.E491K	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	510					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			CCTTTTTCTTCCTCTGAAAGT	0.373													17	21					0	0	0.004990	0	0
UGGT2	55757	broad.mit.edu	37	13	96506591	96506591	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:96506591A>G	uc001vmt.2	-	35	4317	c.4147T>C	c.(4147-4149)TTA>CTA	p.L1383L	UGGT2_uc001vms.2_Silent_p.L103L	NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	1383	Glucosyltransferase.				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTCCGTCTTAAAAGATGTGAT	0.368													25	40					0	0	0.006320	0	0
FARP1	10160	broad.mit.edu	37	13	99061620	99061620	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:99061620C>T	uc001vnj.2	+	14	1779	c.1443C>T	c.(1441-1443)TCC>TCT	p.S481S	FARP1_uc001vnh.2_Silent_p.S481S	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	481					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CTCACCTTTCCGAGCTGTCTG	0.517													17	27					0	0	0.002299	0	0
DOCK9	23348	broad.mit.edu	37	13	99515687	99515687	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:99515687G>A	uc001vnt.2	-	31	3460	c.3405C>T	c.(3403-3405)ATC>ATT	p.I1135I	DOCK9_uc001vnw.2_Silent_p.I1134I|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.I1135I|DOCK9_uc010tis.1_Silent_p.I1134I|DOCK9_uc010tit.1_Silent_p.I1135I|DOCK9_uc010tiq.1_Silent_p.I113I|DOCK9_uc010afu.1_Silent_p.I981I	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1135					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CACTGATGGCGATCAGACGGA	0.493													23	53					0	0	0.006320	0	0
NALCN	259232	broad.mit.edu	37	13	101710319	101710319	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:101710319C>T	uc001vox.1	-	43	5184	c.4995G>A	c.(4993-4995)AGG>AGA	p.R1665R		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1665	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCCCAAATTTCCTCTGGGGTT	0.562													20	33					0	0	0.001882	0	0
NALCN	259232	broad.mit.edu	37	13	101717859	101717859	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:101717859G>A	uc001vox.1	-	40	4690	c.4501C>T	c.(4501-4503)CTG>TTG	p.L1501L		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1501	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCCACCTCCAGCCTCCCACGC	0.577													19	29					0	0	0.001216	0	0
DAOA	267012	broad.mit.edu	37	13	106124949	106124949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:106124949G>A	uc001vqb.2	+	3	470	c.196G>A	c.(196-198)GAG>AAG	p.E66K	DAOA_uc010tjf.1_5'UTR|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_Missense_Mutation_p.M1I|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	66						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					GAGAAGGCATGAGGACGGCTA	0.413													14	7					0	0	0.001855	0	0
MYO16	23026	broad.mit.edu	37	13	109707928	109707928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:109707928C>T	uc001vqt.1	+	27	3380	c.3254C>T	c.(3253-3255)TCG>TTG	p.S1085L	MYO16_uc010agk.1_Missense_Mutation_p.S1107L|MYO16_uc001vqu.1_Missense_Mutation_p.S885L|MYO16_uc010tjh.1_Missense_Mutation_p.S597L	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1085	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CTTTCCTTCTCGGATTTCCTG	0.433													28	21					0	0	0.002096	0	0
COL4A2	1284	broad.mit.edu	37	13	111102714	111102714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:111102714C>T	uc001vqx.2	+	20	1541	c.1252C>T	c.(1252-1254)CCT>TCT	p.P418S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	418	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			CCCCGGCATCCCTGCGCTCTA	0.647													16	11					0	0	0.004007	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113140352	113140352	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:113140352G>A	uc001vse.1	-	22	2866	c.2679C>T	c.(2677-2679)CTC>CTT	p.L893L	TUBGCP3_uc010tjq.1_Silent_p.L883L	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	893					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					GAGACACACGGAGCCTGGGCT	0.587													8	1					0	0	0.000673	0	0
RASA3	22821	broad.mit.edu	37	13	114766341	114766341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr13:114766341G>A	uc001vui.2	-	19	1941	c.1810C>T	c.(1810-1812)CGC>TGC	p.R604C	RASA3_uc010tkk.1_Missense_Mutation_p.R572C|RASA3_uc001vuj.2_Missense_Mutation_p.R221C	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	604	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			TTGGTCAAGCGAAACCATCTC	0.537													37	20					0	0	0.002852	0	0
OR11H12	440153	broad.mit.edu	37	14	19378093	19378093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:19378093G>A	uc010tkp.1	+	1	500	c.500G>A	c.(499-501)GGA>GAA	p.G167E		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	167	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGGTTTGTGGATTTCTGTGG	0.488													28	401					0	0	0.003610	0	0
POTEG	404785	broad.mit.edu	37	14	19553545	19553545	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:19553545G>A	uc001vuz.1	+	1	181	c.129G>A	c.(127-129)GTG>GTA	p.V43V	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	43										ovary(1)	1						AGAGCAACGTGGGCACTTCTG	0.602													20	436					0	0	0.003271	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215589	20215589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20215589G>A	uc010tkt.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGGCTTGATGAAAAAAGAAC	0.308													19	141					0	0	0.006122	0	0
OR4Q3	441669	broad.mit.edu	37	14	20215639	20215639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20215639C>T	uc010tkt.1	+	1	53	c.53C>T	c.(52-54)TCA>TTA	p.S18L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGGGCCTATCATCTTCTTGG	0.363													22	265					0	0	0.003330	0	0
OR4M1	441670	broad.mit.edu	37	14	20248886	20248886	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20248886C>T	uc010tku.1	+	1	405	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATGCTACCATCATGAATCGAC	0.498													96	573					0	0	0.003610	0	0
OR4K2	390431	broad.mit.edu	37	14	20344654	20344654	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20344654C>T	uc001vwh.1	+	1	228	c.228C>T	c.(226-228)TTC>TTT	p.F76F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	76	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGCTTCTTTCGCCACCCCAA	0.418													77	392					0	0	0.003610	0	0
OR4K1	79544	broad.mit.edu	37	14	20404381	20404381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20404381G>A	uc001vwj.1	+	1	556	c.556G>A	c.(556-558)GAG>AAG	p.E186K		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CTTGGTGATAGAGCTGGCTTG	0.443													19	325					0	0	0.001882	0	0
OR4K13	390433	broad.mit.edu	37	14	20502760	20502760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20502760G>A	uc010tkz.1	-	1	158	c.158C>T	c.(157-159)TCG>TTG	p.S53L		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GTGAAGGAGCGAATCAAAGGT	0.423													18	21					0	0	0.007413	0	0
OR4K17	390436	broad.mit.edu	37	14	20585856	20585856	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20585856C>T	uc001vwo.1	+	1	291	c.291C>T	c.(289-291)CTC>CTT	p.L97L		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTGGTAATCTCTCTTTTGTAG	0.388													112	146					0	0	0.003610	0	0
OR11H6	122748	broad.mit.edu	37	14	20691874	20691874	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20691874C>T	uc010tlc.1	+	1	6	c.6C>T	c.(4-6)TTC>TTT	p.F2F		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		tccaaatgttctttattattC	0.194													29	42					0	0	0.007291	0	0
TEP1	7011	broad.mit.edu	37	14	20848177	20848177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20848177G>A	uc001vxe.2	-	35	5079	c.5039C>T	c.(5038-5040)ACT>ATT	p.T1680I	TEP1_uc010ahk.2_Missense_Mutation_p.T1023I|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.T1572I|TEP1_uc010tlh.1_Missense_Mutation_p.T18I	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1680	WD 2.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GGCCACAGCAGTAGGGGATGA	0.493													25	35					0	0	0.003954	0	0
TEP1	7011	broad.mit.edu	37	14	20852304	20852304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:20852304G>A	uc001vxe.2	-	24	3467	c.3427C>T	c.(3427-3429)CCT>TCT	p.P1143S	TEP1_uc010ahk.2_Missense_Mutation_p.P493S|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.P1035S|TEP1_uc010tlh.1_5'Flank	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1143					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GGCCGGGCAGGACTCGGTGGC	0.642													30	36					0	0	0.001512	0	0
NDRG2	57447	broad.mit.edu	37	14	21490298	21490298	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:21490298C>T	uc001vyy.2	-	6	417	c.267G>A	c.(265-267)CAG>CAA	p.Q89Q	NDRG2_uc010tll.1_Silent_p.Q85Q|NDRG2_uc001vyt.2_Silent_p.Q2Q|NDRG2_uc001vyu.2_Silent_p.Q75Q|NDRG2_uc001vyv.2_Silent_p.Q75Q|NDRG2_uc001vyw.2_Silent_p.Q75Q|NDRG2_uc001vzb.2_Silent_p.Q29Q|NDRG2_uc001vyx.2_Silent_p.Q89Q|NDRG2_uc001vza.2_Silent_p.Q75Q|NDRG2_uc001vyz.2_Silent_p.Q75Q|NDRG2_uc001vzc.2_Silent_p.Q75Q|NDRG2_uc001vze.2_Silent_p.Q89Q|NDRG2_uc001vzd.2_Silent_p.Q89Q|NDRG2_uc001vzg.2_Silent_p.Q75Q|NDRG2_uc001vzf.2_Silent_p.Q75Q|NDRG2_uc010aig.2_Silent_p.Q89Q	NM_201540	NP_963834	Q9UN36	NDRG2_HUMAN	N-myc downstream-regulated gene 2 isoform a	89					cell differentiation|nervous system development	centrosome|cytosol|Golgi apparatus|nucleus|perinuclear region of cytoplasm				ovary(1)|breast(1)	2	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GAATGATTTCCTGCATGTCCT	0.493													43	38					0	0	0.002522	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21795916	21795916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:21795916G>A	uc001wag.2	+	17	2845	c.2845G>A	c.(2845-2847)GAC>AAC	p.D949N	RPGRIP1_uc001wah.2_Missense_Mutation_p.D591N|RPGRIP1_uc001wai.2_Missense_Mutation_p.D275N|RPGRIP1_uc001wak.2_Missense_Mutation_p.D424N|RPGRIP1_uc010aim.2_Missense_Mutation_p.D332N|RPGRIP1_uc001wal.2_Missense_Mutation_p.D308N|RPGRIP1_uc001wam.2_Missense_Mutation_p.D266N	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	949					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GGATACCAAGGACAGTTCAAA	0.478													20	22					0	0	0.001523	0	0
OR4E2	26686	broad.mit.edu	37	14	22134223	22134223	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:22134223G>A	uc010tmd.1	+	1	927	c.927G>A	c.(925-927)ACG>ACA	p.T309T		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTTTTTTCACGAAATCATATA	0.393													14	15					0	0	0.004007	0	0
OXA1L	5018	broad.mit.edu	37	14	23235899	23235899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23235899C>T	uc001wgn.2	+	1	169	c.169C>T	c.(169-171)CTT>TTT	p.L57F	OXA1L_uc010tnc.1_Missense_Mutation_p.L57F|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.L57F|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		AGCAAGTCCTCTTCCGGGCAA	0.607													93	84					0	0	0.003610	0	0
LRP10	26020	broad.mit.edu	37	14	23345251	23345251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23345251C>T	uc001whd.2	+	5	1647	c.1094C>T	c.(1093-1095)GCT>GTT	p.A365V	LRP10_uc001whe.2_Missense_Mutation_p.A241V	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	365	LDL-receptor class A 3.|Extracellular (Potential).			A -> T (in Ref. 8).	endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CCCTGTGGGGCTGCTGGCACC	0.617													5	14					0	0	0.000602	0	0
CEBPE	1053	broad.mit.edu	37	14	23588290	23588291	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23588290_23588291CC>TT	uc001wiv.1	-	1	184_185	c.10_11GG>AA	c.(10-12)GGG>AAG	p.G4K		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	4						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		GTAGTAGGTCCCGTGGGACATG	0.703													6	7					0	0	0.004672	0	0
SLC22A17	51310	broad.mit.edu	37	14	23816342	23816342	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23816342G>A	uc001wjl.2	-	8	1352	c.1296C>T	c.(1294-1296)CTC>CTT	p.L432L	SLC22A17_uc010akk.2_Silent_p.L196L|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Silent_p.L414L	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	432	Helical; (Potential).				siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CAGCAGCAAGGAGGGTGCTGA	0.657													7	25					0	0	0.003080	0	0
SLC22A17	51310	broad.mit.edu	37	14	23818558	23818558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23818558G>A	uc001wjl.2	-	3	505	c.449C>T	c.(448-450)TCC>TTC	p.S150F	SLC22A17_uc010akk.2_5'UTR|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.S150F|SLC22A17_uc010akl.1_Missense_Mutation_p.S150F	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	150					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		GCCTGTGGAGGAGCCTGCAGC	0.607													12	15					0	0	0.000978	0	0
IL25	64806	broad.mit.edu	37	14	23842583	23842583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23842583G>A	uc001wjr.2	+	1	566	c.256G>A	c.(256-258)GCC>ACC	p.A86T	IL25_uc001wjq.2_Missense_Mutation_p.A70T	NM_022789	NP_073626	Q9H293	IL25_HUMAN	interleukin 25 isoform 1 precursor	86					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			ovary(1)	1	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		CAACAGCAGGGCCATCTCCCC	0.632													8	33					0	0	0.000673	0	0
MYH7	4625	broad.mit.edu	37	14	23883043	23883043	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23883043C>T	uc001wjx.2	-	39	5821	c.5715G>A	c.(5713-5715)GAG>GAA	p.E1905E		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1905	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCTCCTCTGCCTCATCCAGCT	0.627													41	55					0	0	0.003610	0	0
MYH7	4625	broad.mit.edu	37	14	23884279	23884279	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23884279G>A	uc001wjx.2	-	37	5590	c.5484C>T	c.(5482-5484)GCC>GCT	p.A1828A		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1828	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCTTCTGCTCGGCCTCCAGCT	0.652													28	152					0	0	0.001786	0	0
MYH7	4625	broad.mit.edu	37	14	23884991	23884991	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23884991C>T	uc001wjx.2	-	35	5110	c.5004G>A	c.(5002-5004)AAG>AAA	p.K1668K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1668	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CGATGTTCTCCTTCAGGTCGT	0.627													24	26					0	0	0.003330	0	0
MYH7	4625	broad.mit.edu	37	14	23900656	23900656	+	Missense_Mutation	SNP	C	T	T	rs121913633		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:23900656C>T	uc001wjx.2	-	9	873	c.767G>A	c.(766-768)GGA>GAA	p.G256E		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	256	Myosin head-like.		G -> E (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGCCAACTTTCCTGTTGCCCC	0.488													75	86					0	0	0.003610	0	0
DHRS2	10202	broad.mit.edu	37	14	24114078	24114078	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24114078C>T	uc001wkt.3	+	8	1176	c.729C>T	c.(727-729)ATC>ATT	p.I243I	DHRS2_uc001wku.3_Missense_Mutation_p.H240Y|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_Missense_Mutation_p.H240Y	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	Error:Variant_position_missing_in_Q13268_after_alignment					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		CAAGGAACATCATCAGCTGCA	0.512													15	68					0	0	0.004990	0	0
IPO4	79711	broad.mit.edu	37	14	24653526	24653526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24653526C>T	uc001wmv.1	-	17	1866	c.1735G>A	c.(1735-1737)GAC>AAC	p.D579N	IPO4_uc001wmt.1_Missense_Mutation_p.D57N|IPO4_uc001wmu.2_Missense_Mutation_p.D241N|IPO4_uc001wmx.1_Missense_Mutation_p.D443N|IPO4_uc001wmy.1_Missense_Mutation_p.D443N|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Missense_Mutation_p.D579N	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	579					intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		AAGTCAGGGTCGTCTACCTGG	0.667													4	6					0	0	0.000248	0	0
IPO4	79711	broad.mit.edu	37	14	24654167	24654167	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24654167G>A	uc001wmv.1	-	15	1559	c.1428C>T	c.(1426-1428)TAC>TAT	p.Y476Y	IPO4_uc001wmt.1_5'Flank|IPO4_uc001wmu.2_Silent_p.Y138Y|IPO4_uc001wmx.1_Silent_p.Y340Y|IPO4_uc001wmy.1_Silent_p.Y340Y|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_Silent_p.Y476Y	NM_024658	NP_078934	Q8TEX9	IPO4_HUMAN	importin 4	476	HEAT 4.				intracellular protein transport	cytoplasm|nucleus	protein binding|protein transporter activity			kidney(1)	1				GBM - Glioblastoma multiforme(265;0.0087)		GCTCCGGAAGGTAGGGCTGCA	0.617													10	37					0	0	0.001368	0	0
TGM1	7051	broad.mit.edu	37	14	24724013	24724013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24724013G>A	uc001wod.2	-	13	2069	c.1945C>T	c.(1945-1947)CCA>TCA	p.P649S	TGM1_uc010tog.1_Missense_Mutation_p.P207S	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	649					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	TAGGCCACTGGCATGGTCACA	0.632													22	20					0	0	0.001882	0	0
TGM1	7051	broad.mit.edu	37	14	24731294	24731294	+	Missense_Mutation	SNP	G	A	A	rs146189995		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24731294G>A	uc001wod.2	-	2	389	c.265C>T	c.(265-267)CGG>TGG	p.R89W	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	89	Membrane anchorage region.				cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	GATACAGGCCGGCGGGAGTCT	0.632													20	86					0	0	0.001216	0	0
C14orf21	161424	broad.mit.edu	37	14	24774214	24774214	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24774214C>T	uc001wol.1	+	10	1887	c.1824C>T	c.(1822-1824)ACC>ACT	p.T608T	C14orf21_uc001wom.1_Silent_p.T159T	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	608							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		CCTTGACTACCTTCCTAAAGC	0.552													9	37					0	0	0.004482	0	0
RIPK3	11035	broad.mit.edu	37	14	24806151	24806151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24806151C>T	uc001wpb.2	-	9	1486	c.1276G>A	c.(1276-1278)GGG>AGG	p.G426R	ADCY4_uc001wov.2_5'Flank|ADCY4_uc001wow.2_5'Flank|ADCY4_uc010toh.1_5'Flank|ADCY4_uc001wox.2_5'Flank|ADCY4_uc001woy.2_5'Flank|ADCY4_uc001woz.3_5'Flank|RIPK3_uc001wpa.2_Missense_Mutation_p.G226R|RIPK3_uc010alq.2_RNA|RIPK3_uc010toi.1_Missense_Mutation_p.G205R	NM_006871	NP_006862	Q9Y572	RIPK3_HUMAN	receptor-interacting serine-threonine kinase 3	426					apoptosis|induction of apoptosis by extracellular signals	cytoplasm	ATP binding|protein binding|transcription coactivator activity			central_nervous_system(2)|ovary(1)|lung(1)	4				GBM - Glioblastoma multiforme(265;0.0181)		CTCTCAGCCCCCTGCAAACAG	0.542													29	91					0	0	0.002445	0	0
NFATC4	4776	broad.mit.edu	37	14	24845681	24845681	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24845681C>T	uc001wpc.2	+	9	2559	c.2238C>T	c.(2236-2238)CCC>CCT	p.P746P	NFATC4_uc010tok.1_Silent_p.P809P|NFATC4_uc010tol.1_Silent_p.P809P|NFATC4_uc010alr.2_Silent_p.P809P|NFATC4_uc010tom.1_Silent_p.P759P|NFATC4_uc010ton.1_Silent_p.P759P|NFATC4_uc010too.1_Silent_p.P759P|NFATC4_uc010alt.2_Silent_p.P778P|NFATC4_uc010top.1_Silent_p.P778P|NFATC4_uc010toq.1_Silent_p.P778P|NFATC4_uc010tor.1_Silent_p.P746P|NFATC4_uc010tos.1_Silent_p.P676P|NFATC4_uc010tot.1_Silent_p.P734P|NFATC4_uc010tou.1_Silent_p.P676P|NFATC4_uc010tov.1_Silent_p.P734P|NFATC4_uc010tow.1_Silent_p.P676P|NFATC4_uc010alv.2_Silent_p.P734P|NFATC4_uc010tox.1_Silent_p.P676P|NFATC4_uc001wpd.2_Silent_p.P281P|NFATC4_uc010toy.1_Silent_p.P281P|NFATC4_uc010toz.1_Silent_p.P281P|NFATC4_uc010tpa.1_Silent_p.P34P|NFATC4_uc010tpb.1_Silent_p.P34P	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	746	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		ATGGCATGCCCCCTCTGTACC	0.617													33	36					0	0	0.003271	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884614	24884614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24884614C>T	uc001wpf.3	+	9	3977	c.3659C>T	c.(3658-3660)TCC>TTC	p.S1220F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1220					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						AAGCATTTTTCCCGCTGCATT	0.637													33	44					0	0	0.002096	0	0
NYNRIN	57523	broad.mit.edu	37	14	24886130	24886130	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:24886130C>T	uc001wpf.3	+	9	5493	c.5175C>T	c.(5173-5175)GCC>GCT	p.A1725A		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1725	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TCAAGAGGGCCCTCAAGGAGT	0.642													10	14					0	0	0.000978	0	0
NOVA1	4857	broad.mit.edu	37	14	26917328	26917328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:26917328C>T	uc001wpy.2	-	5	1679	c.1361G>A	c.(1360-1362)AGG>AAG	p.R454K	NOVA1_uc001wpz.2_Missense_Mutation_p.R430K|NOVA1_uc001wqa.2_Missense_Mutation_p.R332K	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	457	KH 3.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GATCTGTATCCTTGCACCAGT	0.433													25	14					0	0	0.003330	0	0
G2E3	55632	broad.mit.edu	37	14	31084663	31084663	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:31084663C>T	uc001wqk.2	+	14	1936	c.1782C>T	c.(1780-1782)ATC>ATT	p.I594I	G2E3_uc010tpf.1_Silent_p.I548I|G2E3_uc001wql.1_Silent_p.I106I	NM_017769	NP_060239	Q7L622	G2E3_HUMAN	G2/M-phase specific E3 ubiquitin ligase	594	HECT.				apoptosis|multicellular organismal development|protein modification process	Golgi apparatus|nucleolus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CTGCAAAAATCCTTAGTGAGC	0.388													46	61					0	0	0.003610	0	0
SCFD1	23256	broad.mit.edu	37	14	31164036	31164036	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:31164036C>T	uc001wqm.1	+	15	1324	c.1300C>T	c.(1300-1302)CTG>TTG	p.L434L	SCFD1_uc001wqn.1_Silent_p.L367L|SCFD1_uc010tpg.1_Silent_p.L375L|SCFD1_uc010tph.1_Silent_p.L249L|SCFD1_uc010amf.1_Silent_p.L249L|SCFD1_uc010tpi.1_Silent_p.L342L|SCFD1_uc010amd.1_Silent_p.L266L|SCFD1_uc010ame.1_Silent_p.L367L	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	434					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		CAAAACTACTCTGGATAAATC	0.279													13	70					0	0	0.002450	0	0
SCFD1	23256	broad.mit.edu	37	14	31191097	31191097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:31191097C>T	uc001wqm.1	+	22	1768	c.1744C>T	c.(1744-1746)CCC>TCC	p.P582S	SCFD1_uc001wqn.1_Missense_Mutation_p.P515S|SCFD1_uc010tpg.1_Missense_Mutation_p.P523S|SCFD1_uc010tph.1_Missense_Mutation_p.P397S|SCFD1_uc010amf.1_Missense_Mutation_p.P397S|SCFD1_uc010tpi.1_Missense_Mutation_p.P490S|SCFD1_uc010ame.1_Intron	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	582					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		CAGCTCAGTTCCCAGAAATAA	0.338													35	66					0	0	0.006999	0	0
HEATR5A	25938	broad.mit.edu	37	14	31774132	31774132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:31774132G>A	uc001wrf.3	-	26	4416	c.4339C>T	c.(4339-4341)CCT>TCT	p.P1447S	HEATR5A_uc010ami.2_Missense_Mutation_p.P1345S	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	1734							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CACACTGCAGGAAGTTCGGAA	0.418													14	52					0	0	0.003163	0	0
ARHGAP5	394	broad.mit.edu	37	14	32561547	32561547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:32561547C>T	uc001wrl.2	+	2	1911	c.1672C>T	c.(1672-1674)CTT>TTT	p.L558F	ARHGAP5_uc001wrm.2_Missense_Mutation_p.L558F|ARHGAP5_uc001wrn.2_Missense_Mutation_p.L558F|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	558					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		AGAAACATGTCTTAGTGGCCA	0.368													33	23					0	0	0.006230	0	0
AKAP6	9472	broad.mit.edu	37	14	33291510	33291510	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:33291510C>T	uc001wrq.2	+	13	4661	c.4491C>T	c.(4489-4491)CCC>CCT	p.P1497P		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1497					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGGAGGATCCCCTGCTTCGTG	0.368													21	15					0	0	0.001882	0	0
AKAP6	9472	broad.mit.edu	37	14	33291517	33291517	+	Missense_Mutation	SNP	C	T	T	rs74976151	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:33291517C>T	uc001wrq.2	+	13	4668	c.4498C>T	c.(4498-4500)CGT>TGT	p.R1500C		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1500					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TCCCCTGCTTCGTGGTTTTTA	0.378													12	28					0	0	0.000978	0	0
EGLN3	112399	broad.mit.edu	37	14	34419857	34419857	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:34419857G>A	uc001wsa.3	-	1	428	c.102C>T	c.(100-102)TTC>TTT	p.F34F	EGLN3_uc001wry.2_Intron|EGLN3_uc001wrz.2_Silent_p.F34F|EGLN3_uc001wsb.1_Silent_p.F34F	NM_022073	NP_071356	Q9H6Z9	EGLN3_HUMAN	egl nine homolog 3	34					apoptosis	cytoplasm|nucleus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding				0	Breast(36;0.0303)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.000246)|Lung(238;0.000959)|Epithelial(34;0.155)	GBM - Glioblastoma multiforme(112;0.0118)	Vitamin C(DB00126)	CCTCGCCCAGGAAGTTGTCCA	0.682													15	25					0	0	0.004007	0	0
BAZ1A	11177	broad.mit.edu	37	14	35253105	35253105	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:35253105G>A	uc001wsk.2	-	15	2428	c.1860C>T	c.(1858-1860)CTC>CTT	p.L620L	BAZ1A_uc001wsl.2_Silent_p.L588L	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	620					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		GCTTTCCACAGAGAGCATGGA	0.343													18	41					0	0	0.006122	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36064925	36064925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:36064925G>A	uc001wti.2	-	36	5997	c.5606C>T	c.(5605-5607)CCA>CTA	p.P1869L	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Missense_Mutation_p.P1869L|RALGAPA1_uc010tpv.1_Missense_Mutation_p.P1882L|RALGAPA1_uc010tpw.1_Missense_Mutation_p.P1916L	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1869	Minimal domain that binds to TCF3/E12 (By similarity).|Rap-GAP.				activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						AGCAAAATATGGAGTGGTCAA	0.353													20	51					0	0	0.001216	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36125019	36125019	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:36125019G>A	uc001wti.2	-	28	4363	c.3972C>T	c.(3970-3972)TCC>TCT	p.S1324S	RALGAPA1_uc010amp.2_RNA|RALGAPA1_uc001wtj.2_Silent_p.S1324S|RALGAPA1_uc010tpv.1_Silent_p.S1337S|RALGAPA1_uc010tpw.1_Silent_p.S1371S	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	1324					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTACCTTTAAGGAAACACAAA	0.308													27	104					0	0	0.001786	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724818	38724818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:38724818G>A	uc001wum.1	-	1	757	c.410C>T	c.(409-411)TCC>TTC	p.S137F		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	137	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CGCGGTGCAGGAGCGTTGGGG	0.687													6	19					0	0	0.001168	0	0
LRFN5	145581	broad.mit.edu	37	14	42356404	42356404	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:42356404C>T	uc001wvm.2	+	3	1774	c.576C>T	c.(574-576)TCC>TCT	p.S192S	LRFN5_uc010ana.2_Silent_p.S192S	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	192	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GGACCTTCTCCCATTTGCACA	0.438										HNSCC(30;0.082)			11	21					0	0	0.000978	0	0
C14orf106	55320	broad.mit.edu	37	14	45712031	45712031	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:45712031G>A	uc001wwf.2	-	3	1050	c.591C>T	c.(589-591)TTC>TTT	p.F197F	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	197					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						TGACCGGGAGGAAAATATCAT	0.338													27	53					0	0	0.001786	0	0
RPL10L	140801	broad.mit.edu	37	14	47120507	47120507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:47120507C>T	uc001wwg.2	-	1	522	c.433G>A	c.(433-435)GAG>AAG	p.E145K		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	145					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						ACATGCTCCTCGTTCTGAAGC	0.527													20	32					0	0	0.002780	0	0
ABHD12B	145447	broad.mit.edu	37	14	51368622	51368622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:51368622G>A	uc001wys.2	+	10	871	c.856G>A	c.(856-858)GAT>AAT	p.D286N	ABHD12B_uc001wyq.2_Missense_Mutation_p.D179N|ABHD12B_uc001wyr.2_Missense_Mutation_p.D209N|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	286							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					CTTTCCTAATGATGAAAAGTA	0.313													8	3					0	0	0.006214	0	0
FRMD6	122786	broad.mit.edu	37	14	52194676	52194676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:52194676C>T	uc001wzd.2	+	14	2083	c.1798C>T	c.(1798-1800)CCA>TCA	p.P600S	FRMD6_uc001wzb.2_Missense_Mutation_p.P592S|FRMD6_uc001wzc.2_Missense_Mutation_p.P592S|FRMD6_uc001wze.2_Missense_Mutation_p.P523S|FRMD6_uc001wzf.2_Missense_Mutation_p.P293S|FRMD6_uc001wzg.2_Missense_Mutation_p.P242S	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	600						cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					AGATGCTTTTCCAGTCAAAAG	0.463													11	16					0	0	0.000673	0	0
NID2	22795	broad.mit.edu	37	14	52485933	52485933	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:52485933G>A	uc001wzo.2	-	14	3108	c.2874C>T	c.(2872-2874)TTC>TTT	p.F958F	NID2_uc010tqs.1_Silent_p.F910F|NID2_uc010tqt.1_Silent_p.F958F|NID2_uc001wzp.2_Silent_p.F958F	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	958	Thyroglobulin type-1 1.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GGGGGATGTGGAACCGGGCCC	0.602													15	4					0	0	0.001523	0	0
RTN1	6252	broad.mit.edu	37	14	60212431	60212431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:60212431C>T	uc001xen.1	-	2	1219	c.1010G>A	c.(1009-1011)GGA>GAA	p.G337E		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	337					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TTTACCTGTTCCAGAAGATGG	0.438													27	41					0	0	0.001786	0	0
RTN1	6252	broad.mit.edu	37	14	60212477	60212477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:60212477C>T	uc001xen.1	-	2	1173	c.964G>A	c.(964-966)GAG>AAG	p.E322K		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	322					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TCTTCAGGCTCCGAGACAGTG	0.483													42	11					0	0	0.002852	0	0
SYNE2	23224	broad.mit.edu	37	14	64692073	64692073	+	Silent	SNP	C	T	T	rs144405351		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:64692073C>T	uc001xgm.2	+	115	20717	c.20487C>T	c.(20485-20487)CTC>CTT	p.L6829L	SYNE2_uc001xgl.2_Silent_p.L6851L|SYNE2_uc010apy.2_Silent_p.L3214L|SYNE2_uc001xgn.2_Silent_p.L1790L|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Silent_p.L799L|SYNE2_uc001xgq.2_Silent_p.L1208L|SYNE2_uc001xgr.2_Silent_p.L612L|SYNE2_uc010tsi.1_Silent_p.L486L|SYNE2_uc001xgs.2_Silent_p.L500L|SYNE2_uc001xgt.2_Silent_p.L373L	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6829	Cytoplasmic (Potential).|KASH.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GCTCCTTCCTCTCAAGGGTGG	0.478													13	5					0	0	0.001368	0	0
MTHFD1	4522	broad.mit.edu	37	14	64898264	64898264	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:64898264C>T	uc001xhb.2	+	14	1713	c.1326C>T	c.(1324-1326)CTC>CTT	p.L442L	MTHFD1_uc010aqe.2_Silent_p.L478L|MTHFD1_uc010aqf.2_Silent_p.L498L	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	442	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	ATCTCCACCTCACAGGTGACA	0.443													16	5					0	0	0.006122	0	0
RDH12	145226	broad.mit.edu	37	14	68191281	68191281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:68191281G>A	uc001xjz.3	+	4	484	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	54					photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	CATTGGCAAGGAGACGGCCAG	0.557													11	15					0	0	0.000673	0	0
ADAM21	8747	broad.mit.edu	37	14	70924528	70924528	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:70924528C>T	uc001xmd.2	+	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	104					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		ATCAGCTCTTCATCCCAGATG	0.478													5	33					0	0	0.001168	0	0
MAP3K9	4293	broad.mit.edu	37	14	71197228	71197228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:71197228G>A	uc001xmm.2	-	12	3184	c.3184C>T	c.(3184-3186)CCG>TCG	p.P1062S	MAP3K9_uc010ttk.1_Missense_Mutation_p.P790S|MAP3K9_uc001xmk.2_Missense_Mutation_p.P795S|MAP3K9_uc001xml.2_Missense_Mutation_p.P1076S	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	1062					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CGCTCAGTCGGGGGCAGCGGC	0.662													9	5					0	0	0.004482	0	0
PCNX	22990	broad.mit.edu	37	14	71543007	71543007	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:71543007C>T	uc001xmo.2	+	28	5654	c.5208C>T	c.(5206-5208)GTC>GTT	p.V1736V	PCNX_uc010are.1_Silent_p.V1625V|PCNX_uc010arf.1_Silent_p.V524V	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1736						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GCAATTATGTCGATGTGGACC	0.448													28	21					0	0	0.007291	0	0
PCNX	22990	broad.mit.edu	37	14	71543100	71543100	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:71543100C>T	uc001xmo.2	+	28	5747	c.5301C>T	c.(5299-5301)CTC>CTT	p.L1767L	PCNX_uc010are.1_Silent_p.L1656L|PCNX_uc010arf.1_Silent_p.L555L	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1767						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TGATTTACCTCAACTGGATAG	0.413													20	10					0	0	0.002780	0	0
RGS6	9628	broad.mit.edu	37	14	72985102	72985102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:72985102G>A	uc001xna.3	+	15	1658	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N	RGS6_uc010ttn.1_Missense_Mutation_p.D379N|RGS6_uc001xmx.3_Missense_Mutation_p.D379N|RGS6_uc010tto.1_RNA|RGS6_uc001xmy.3_Missense_Mutation_p.D379N|RGS6_uc010ttp.1_Missense_Mutation_p.D310N|RGS6_uc001xmz.1_Missense_Mutation_p.D240N	NM_004296	NP_004287	P49758	RGS6_HUMAN	regulator of G-protein signalling 6	379	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			upper_aerodigestive_tract(1)|lung(1)|skin(1)	3				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		ACCCCTACAGGATGTGGCCAA	0.517													27	12					0	0	0.005443	0	0
DPF3	8110	broad.mit.edu	37	14	73190401	73190401	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:73190401C>T	uc001xnc.2	-	5	478	c.465G>A	c.(463-465)GGG>GGA	p.G155G	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Silent_p.G155G|DPF3_uc010ttq.1_Silent_p.G165G	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	155					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		CTTCTTCATTCCCTTCTTCTA	0.403													55	23					0	0	0.003610	0	0
ACOT1	641371	broad.mit.edu	37	14	74008211	74008211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:74008211C>T	uc001xol.1	+	2	670	c.472C>T	c.(472-474)CCT>TCT	p.P158S	HEATR4_uc010tua.1_Intron|ACOT1_uc010tuc.1_Missense_Mutation_p.P158S	NM_001037161	NP_001032238	Q86TX2	ACOT1_HUMAN	acyl-CoA thioesterase 1	158					acyl-CoA metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process	cytosol	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				OV - Ovarian serous cystadenocarcinoma(108;1.37e-45)|BRCA - Breast invasive adenocarcinoma(234;0.0033)		TGGGCCCTTTCCTGGCATTGT	0.358													53	23					0	0	0.003610	0	0
ACOT4	122970	broad.mit.edu	37	14	74062026	74062026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:74062026G>A	uc001xoo.2	+	3	1188	c.934G>A	c.(934-936)GAG>AAG	p.E312K		NM_152331	NP_689544	Q8N9L9	ACOT4_HUMAN	acyl-CoA thioesterase 4	312					acyl-CoA metabolic process|dicarboxylic acid metabolic process|long-chain fatty acid metabolic process|saturated monocarboxylic acid metabolic process|short-chain fatty acid metabolic process|succinyl-CoA metabolic process|unsaturated monocarboxylic acid metabolic process|very long-chain fatty acid metabolic process	peroxisome	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		GATTCCAATAGAGAAGGCCCA	0.507													21	18					0	0	0.001216	0	0
ABCD4	5826	broad.mit.edu	37	14	74766262	74766262	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:74766262G>A	uc001xpr.2	-	3	426	c.274C>T	c.(274-276)CTG>TTG	p.L92L	ABCD4_uc001xps.2_Intron|ABCD4_uc001xpt.2_Intron|ABCD4_uc010tur.1_Silent_p.L5L|ABCD4_uc001xpu.2_5'UTR|ABCD4_uc001xpv.2_Intron	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	92	ABC transmembrane type-1.|Helical; (Potential).					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		GTGGAGTTCAGAACAATGAGC	0.512													18	14					0	0	0.006122	0	0
TMEM90A	646658	broad.mit.edu	37	14	74876401	74876401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:74876401G>A	uc001xpx.2	-	2	295	c.47C>T	c.(46-48)CCT>CTT	p.P16L		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	16					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		GAGATGGGCAGGGCTCCTGGG	0.657													19	11					0	0	0.001882	0	0
LTBP2	4053	broad.mit.edu	37	14	74978046	74978046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:74978046G>A	uc001xqa.2	-	19	3317	c.2930C>T	c.(2929-2931)CCC>CTC	p.P977L		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	977	EGF-like 7; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GCAGGTACCGGGGTGACGGCA	0.567													31	17					0	0	0.004289	0	0
MLH3	27030	broad.mit.edu	37	14	75514786	75514786	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:75514786G>A	uc001xrd.1	-	2	1789	c.1573C>T	c.(1573-1575)CTA>TTA	p.L525L	MLH3_uc001xre.1_Silent_p.L525L|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	525					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		CATATTTCTAGATCCTGCCCA	0.378								MMR					46	6					0	0	0.003610	0	0
C14orf166B	145497	broad.mit.edu	37	14	77318763	77318763	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:77318763G>A	uc001xsx.2	+	8	897	c.783G>A	c.(781-783)AGG>AGA	p.R261R	C14orf166B_uc010asn.1_Silent_p.R21R|C14orf166B_uc001xsw.2_RNA|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	261	LRR 5.										0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		TCCACACAAGGGGAGCTGTGG	0.582													10	1					0	0	0.006214	0	0
VIPAR	63894	broad.mit.edu	37	14	77904188	77904188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:77904188G>A	uc001xtt.1	-	13	1137	c.799C>T	c.(799-801)CCT>TCT	p.P267S	VIPAR_uc001xtu.1_Missense_Mutation_p.P267S|VIPAR_uc010tvj.1_Missense_Mutation_p.P218S|VIPAR_uc001xtv.1_Missense_Mutation_p.P267S	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	267					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CGTTTGTCAGGGTCCTGAATG	0.353													22	12					0	0	0.003954	0	0
NRXN3	9369	broad.mit.edu	37	14	78709968	78709968	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:78709968G>A	uc001xum.1	+	2		c.1325G>A						Q9Y4C0	NRX3A_HUMAN	Homo sapiens mRNA for KIAA0743 protein, partial cds.						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GTTAATTCTGGATCTCAAGTA	0.572													10	21					0	0	0.000673	0	0
EML5	161436	broad.mit.edu	37	14	89172638	89172638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:89172638C>T	uc001xxg.2	-	12	1976	c.1790G>A	c.(1789-1791)AGA>AAA	p.R597K	EML5_uc001xxh.1_5'UTR	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	597	WD 10.					cytoplasm|microtubule				ovary(3)	3						TTTCAGTTTTCTTTCAGGAAT	0.393													30	10					0	0	0.002836	0	0
TTC8	123016	broad.mit.edu	37	14	89338717	89338717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:89338717C>T	uc010ath.2	+	13	1450	c.1316C>T	c.(1315-1317)GCT>GTT	p.A439V	TTC8_uc001xxl.2_Missense_Mutation_p.A184V|TTC8_uc010ati.2_Missense_Mutation_p.A225V|TTC8_uc001xxm.2_Missense_Mutation_p.A383V|TTC8_uc010atj.2_Missense_Mutation_p.A158V|TTC8_uc001xxi.2_Missense_Mutation_p.A423V|TTC8_uc001xxj.2_Missense_Mutation_p.A413V|TTC8_uc001xxk.2_Missense_Mutation_p.A383V	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	449	TPR 7.				cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						TTCAGGCTGGCTCTGGTCAAC	0.532									Bardet-Biedl_syndrome				25	33					0	0	0.003330	0	0
TDP1	55775	broad.mit.edu	37	14	90446902	90446902	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:90446902C>T	uc001xxy.2	+	8	1109	c.810C>T	c.(808-810)CTC>CTT	p.L270L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.L270L|TDP1_uc010atn.2_Silent_p.L270L|TDP1_uc001xya.2_Silent_p.L31L|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.L270L	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	270					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		TGCTGCTGCTCTATGAAGAAG	0.418								Repair_of_DNA-protein_crosslinks					37	13					0	0	0.002222	0	0
TDP1	55775	broad.mit.edu	37	14	90458319	90458319	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:90458319C>A	uc001xxy.2	+	13	1724	c.1425C>A	c.(1423-1425)TCC>TCA	p.S475S	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.S475S|TDP1_uc010atn.2_Silent_p.S475S|TDP1_uc001xya.2_Silent_p.S236S|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.S475S|TDP1_uc001xyd.1_Silent_p.S90S	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	475					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		GGCTGCATTCCTATTTTCAGT	0.294								Repair_of_DNA-protein_crosslinks					43	14					6.18754e-15	9.00886e-15	0.003610	1	0
CATSPERB	79820	broad.mit.edu	37	14	92185775	92185775	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:92185775G>A	uc001xzs.1	-	5	497	c.357C>T	c.(355-357)ATC>ATT	p.I119I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	119					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TGCTTTGTGTGATGTTTTCTC	0.313													14	22					0	0	0.001216	0	0
CATSPERB	79820	broad.mit.edu	37	14	92189534	92189534	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:92189534C>T	uc001xzs.1	-	4	309	c.169_splice	c.e4-1	p.K57_splice		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta						cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				ACTGGATTTTCTTTAGGAAAG	0.353													15	5					0	0	0.002450	0	0
PRIMA1	145270	broad.mit.edu	37	14	94203637	94203637	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:94203637G>A	uc001ybw.1	-	4	351	c.309C>T	c.(307-309)TCC>TCT	p.S103S	PRIMA1_uc001ybx.1_RNA	NM_178013	NP_821092	Q86XR5	PRIMA_HUMAN	proline rich membrane anchor 1 precursor	103	Helical; (Potential).				neurotransmitter catabolic process	cell junction|integral to membrane|synapse				large_intestine(1)|skin(1)	2		all_cancers(154;0.127)		Epithelial(152;0.138)|COAD - Colon adenocarcinoma(157;0.229)		GAAACACCAGGGAGGCACAGC	0.537													26	4					0	0	0.001512	0	0
SERPINA10	51156	broad.mit.edu	37	14	94756232	94756232	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:94756232C>T	uc001yct.2	-	2	1165	c.699G>A	c.(697-699)GTG>GTA	p.V233V	SERPINA10_uc001ycu.3_Silent_p.V233V	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	233					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		AGATGTAATCCACAAGAATTA	0.413													25	10					0	0	0.003330	0	0
SERPINA4	5267	broad.mit.edu	37	14	95029956	95029956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:95029956C>T	uc001ydk.2	+	2	203	c.137C>T	c.(136-138)TCC>TTC	p.S46F	SERPINA4_uc010avd.2_Missense_Mutation_p.S83F|SERPINA4_uc001ydl.2_Missense_Mutation_p.S46F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	46					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GGTGAGGGCTCCCCCAGCCTC	0.567													18	32					0	0	0.007413	0	0
SERPINA5	5104	broad.mit.edu	37	14	95058553	95058553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:95058553C>T	uc001ydm.2	+	6	1408	c.1198C>T	c.(1198-1200)CTT>TTT	p.L400F	SERPINA3_uc001ydo.3_Intron	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	400					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	CATCCTCTTCCTTGGCAAAGT	0.532													162	54					0	0	0.003610	0	0
DICER1	23405	broad.mit.edu	37	14	95572535	95572535	+	Nonsense_Mutation	SNP	G	A	A	rs137852978		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:95572535G>A	uc001ydw.2	-	19	3012	c.2830C>T	c.(2830-2832)CGA>TGA	p.R944*	DICER1_uc010avh.1_5'UTR|DICER1_uc001ydv.2_Nonsense_Mutation_p.R934*|DICER1_uc001ydx.2_Nonsense_Mutation_p.R944*|DICER1_uc001ydy.1_5'Flank	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	944	PAZ.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		ACATAAAATCGATGAGGCTGA	0.303			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				15	24					0	0	0.003163	0	0
ATG2B	55102	broad.mit.edu	37	14	96790332	96790332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:96790332G>A	uc001yfi.2	-	16	2806	c.2441C>T	c.(2440-2442)TCG>TTG	p.S814L		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	814										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TTCCTGGAACGATCCTAAAAA	0.398													16	6					0	0	0.004990	0	0
BCL11B	64919	broad.mit.edu	37	14	99737530	99737530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:99737530G>A	uc001yga.2	-	1	293	c.26C>T	c.(25-27)CCG>CTG	p.P9L	BCL11B_uc001ygb.2_Missense_Mutation_p.P9L	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	9						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CAAGTGCTGCGGGTTGCCCTG	0.677			T	TLX3	T-ALL								3	7					0	0	0.000248	0	0
EML1	2009	broad.mit.edu	37	14	100344907	100344907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:100344907C>T	uc001ygs.2	+	4	538	c.469C>T	c.(469-471)CGC>TGC	p.R157C	EML1_uc010avt.1_Missense_Mutation_p.R144C|EML1_uc010tww.1_Missense_Mutation_p.R145C|EML1_uc001ygq.2_Missense_Mutation_p.R176C|EML1_uc001ygr.2_Missense_Mutation_p.R176C	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	157						cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				AAACCGGAATCGCACAGGCTC	0.507													62	15					0	0	0.003610	0	0
MIR376A2	664615	broad.mit.edu	37	14	101506457	101506457	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:101506457C>T	hsa-mir-376a-2|MI0003529	+			c.52C>T			MIR654_hsa-mir-654|MI0003676_5'Flank|MIR376B_hsa-mir-376b|MI0002466_5'Flank|uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						GATGGTTAATCATAGAGGAAA	0.453													36	14					0	0	0.003755	0	0
MIR409	574413	broad.mit.edu	37	14	101531703	101531703	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:101531703C>T	hsa-mir-409|MI0001735	+			c.67C>T			MIR412_hsa-mir-412|MI0002464_5'Flank|uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						CGGTGAACCCCTTTTCGGTAT	0.582													10	39					0	0	0.000673	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102468007	102468007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:102468007C>T	uc001yks.2	+	21	4695	c.4531C>T	c.(4531-4533)CCG>TCG	p.P1511S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1511	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GAAGCTCTCTCCGTATTACAA	0.502													21	10					0	0	0.001523	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102548767	102548767	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:102548767G>A	uc001yku.3	-	10	1960	c.1770C>T	c.(1768-1770)AAC>AAT	p.N590N	HSP90AA1_uc001ykv.3_Silent_p.N712N	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	590					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	TCACCAATCGGTTTGACACAA	0.388													21	3					0	0	0.001882	0	0
ZNF839	55778	broad.mit.edu	37	14	102792644	102792644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:102792644C>T	uc001ylo.2	+	2	613	c.263C>T	c.(262-264)TCC>TTC	p.S88F	ZNF839_uc010awk.1_Missense_Mutation_p.S204F|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Missense_Mutation_p.S88F|ZNF839_uc001ylr.2_Missense_Mutation_p.S88F	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	88						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						GAACAGGGCTCCATGTTGACC	0.532													5	4					0	0	0.001168	0	0
TECPR2	9895	broad.mit.edu	37	14	102891506	102891506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:102891506C>T	uc001ylw.1	+	6	977	c.829C>T	c.(829-831)CCC>TCC	p.P277S	TECPR2_uc010txw.1_3'UTR|TECPR2_uc010awl.2_Missense_Mutation_p.P277S|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	277							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						TCTGGAATCCCCCAACAGTGG	0.493													47	19					0	0	0.003610	0	0
TECPR2	9895	broad.mit.edu	37	14	102894633	102894633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:102894633C>T	uc001ylw.1	+	7	1146	c.998C>T	c.(997-999)TCG>TTG	p.S333L	TECPR2_uc010awl.2_Missense_Mutation_p.S333L|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	333							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GTGTCTGTTTCGTGCACAGAA	0.318													20	7					0	0	0.007413	0	0
EIF5	1983	broad.mit.edu	37	14	103805664	103805664	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:103805664C>T	uc001ymq.2	+	9	1422	c.900C>T	c.(898-900)TTC>TTT	p.F300F	EIF5_uc001ymr.2_Silent_p.F300F|EIF5_uc001yms.2_Silent_p.F300F|EIF5_uc001ymt.2_Silent_p.F300F|EIF5_uc001ymu.2_Silent_p.F300F	NM_001969	NP_001960	P55010	IF5_HUMAN	eukaryotic translation initiation factor 5	300	W2.				regulation of translational initiation|RNA metabolic process	cytosol	GTP binding|GTPase activity|translation initiation factor activity			pancreas(1)|breast(1)|skin(1)	3		Melanoma(154;0.155)	Epithelial(46;0.182)			GGCGCCATTTCCTACGAGTAA	0.398													47	16					0	0	0.003610	0	0
JAG2	3714	broad.mit.edu	37	14	105618331	105618332	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:105618331_105618332GG>AA	uc001yqg.2	-	7	1386_1387	c.982_983CC>TT	c.(982-984)CCT>TTT	p.P328F	JAG2_uc001yqf.2_5'Flank|JAG2_uc001yqh.2_Missense_Mutation_p.P328F	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	328	Extracellular (Potential).|EGF-like 3.				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GTACTGGTCAGGCTCGGCGTTG	0.653													10	24					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106406096	106406096	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:106406096C>T	uc010tyt.1	-	2356		c.42086_splice	c.e2356-1							Parts of antibodies, mostly variable regions.												0						AGCCAGAATTCAGCAGGCTCT	0.577													7	4					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106641520	106641520	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:106641520G>A	uc010tyt.1	-	1022		c.24448C>T								Parts of antibodies, mostly variable regions.												0						CCTCCTCCCTGGGGTTTCTGA	0.473													60	14					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106963108	106963108	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:106963108C>T	uc010tyt.1	-	207		c.9576G>A								Parts of antibodies, mostly variable regions.												0						GTCCGGGGGCCTGTCGCACCC	0.552													21	46					0	0	0.003330	0	0
ADAM6	8755	broad.mit.edu	37	14	107078526	107078526	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr14:107078526C>T	uc010tyt.1	-	117		c.5764G>A								Parts of antibodies, mostly variable regions.												0						TCCATCCTATCCACTCAAGGC	0.527													44	13					0	0	0.002852	0	0
OR4M2	390538	broad.mit.edu	37	15	22369378	22369378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:22369378C>T	uc010tzu.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GACTCGTTTTCCCTAGATAAA	0.423													38	89					0	0	0.004878	0	0
C15orf2	23742	broad.mit.edu	37	15	24921510	24921510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:24921510C>T	uc001ywo.2	+	1	970	c.496C>T	c.(496-498)CCG>TCG	p.P166S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	166					cell differentiation|multicellular organismal development|spermatogenesis			p.P166P(1)		ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGATGAGGATCCGGTGCAGAT	0.632													10	22					0	0	0.006214	0	0
C15orf2	23742	broad.mit.edu	37	15	24922582	24922582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:24922582C>T	uc001ywo.2	+	1	2042	c.1568C>T	c.(1567-1569)TCC>TTC	p.S523F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	523	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGTGTGGATTCCCCTCCTCCT	0.547													98	100					0	0	0.003610	0	0
SNORD115-26	100033802	broad.mit.edu	37	15	25472064	25472064	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:25472064G>A	uc001yzw.1	+	7		c.1107_splice	c.e7-1		SNORD115-20_uc001yzq.1_Intron|SNORD115-31_uc001yzz.1_5'Flank|SNORD115-32_uc001zaa.1_5'Flank					Homo sapiens clone Rt-15 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						TGTCTCCCCAGATGGTGACCC	0.607													4	3					0	0	0.000248	0	0
GABRB3	2562	broad.mit.edu	37	15	26793153	26793153	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:26793153C>T	uc001zaz.2	-	9	1351	c.1209G>A	c.(1207-1209)AGG>AGA	p.R403R	GABRB3_uc010uae.1_Silent_p.R318R|GABRB3_uc001zba.2_Silent_p.R403R|GABRB3_uc001zbb.2_Silent_p.R459R	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	403	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TGCTCTGTTTCCTGTACTGGA	0.512													33	32					0	0	0.003755	0	0
GABRB3	2562	broad.mit.edu	37	15	26825604	26825604	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:26825604C>T	uc001zaz.2	-	6	687	c.545_splice	c.e6-1	p.Y182_splice	GABRB3_uc010uae.1_Splice_Site_p.Y97_splice|GABRB3_uc001zba.2_Splice_Site_p.Y182_splice|GABRB3_uc001zbb.2_Splice_Site_p.Y238_splice	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta						synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTGTAGCCATCTGCCAAGAGA	0.493													12	48					0	0	0.004007	0	0
GABRA5	2558	broad.mit.edu	37	15	27193130	27193130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:27193130G>A	uc001zbd.1	+	12	1478	c.1139G>A	c.(1138-1140)GGG>GAG	p.G380E	GABRA5_uc001zbe.1_RNA	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	380	Cytoplasmic (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTACAACTGGGAAGATGTCT	0.438													8	4					0	0	0.003080	0	0
OTUD7A	161725	broad.mit.edu	37	15	31819474	31819474	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:31819474C>T	uc001zfq.2	-	5	783	c.690G>A	c.(688-690)CGG>CGA	p.R230R	OTUD7A_uc001zfr.2_Silent_p.R230R	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	230	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		AGAGAGCTTTCCGTAACACCA	0.567													80	80					0	0	0.003610	0	0
RYR3	6263	broad.mit.edu	37	15	33603265	33603265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:33603265G>A	uc001zhi.2	+	1	89	c.19G>A	c.(19-21)GGA>AGA	p.G7R	RYR3_uc010bar.2_Missense_Mutation_p.G7R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	7	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGGGGGAGAAGGAGGCGAGGA	0.741													8	18					0	0	0.006214	0	0
RYR3	6263	broad.mit.edu	37	15	34102837	34102837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:34102837C>T	uc001zhi.2	+	71	10254	c.10184C>T	c.(10183-10185)TCG>TTG	p.S3395L	RYR3_uc010bar.2_Missense_Mutation_p.S3390L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3395					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTCGCAAAATCGCGATACAGC	0.542													12	29					0	0	0.003163	0	0
AQR	9716	broad.mit.edu	37	15	35178780	35178780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:35178780G>A	uc001ziv.2	-	25	2945	c.2764C>T	c.(2764-2766)CCA>TCA	p.P922S		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	922						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		GCATCTCCTGGAACCCCTAGA	0.363													54	59					0	0	0.003610	0	0
CSNK1A1P	161635	broad.mit.edu	37	15	37110296	37110296	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:37110296C>T	uc001zjg.3	-	1		c.412G>A				NR_027320				Homo sapiens casein kinase 1, alpha 1 pseudogene, mRNA (cDNA clone IMAGE:5166482).												0						TTTATATTTCCTTCCGACAAT	0.537													3	5					0	0	0.004672	0	0
FAM98B	283742	broad.mit.edu	37	15	38757496	38757496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:38757496C>T	uc001zkb.1	+	3	279	c.244C>T	c.(244-246)CTT>TTT	p.L82F	FAM98B_uc001zkc.2_Missense_Mutation_p.L82F	NM_001042429	NP_001035894	Q52LJ0	FA98B_HUMAN	family with sequence similarity 98, member B	82						tRNA-splicing ligase complex	protein binding			ovary(1)	1		all_cancers(109;3.11e-17)|all_epithelial(112;2.64e-15)|Lung NSC(122;2.11e-11)|all_lung(180;5.61e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;9e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0209)		GAGCTTCCAGCTTGAGATAAG	0.308													12	23					0	0	0.001855	0	0
FAM98B	283742	broad.mit.edu	37	15	38773740	38773740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:38773740C>T	uc001zkb.1	+	7	1012	c.977C>T	c.(976-978)TCT>TTT	p.S326F	FAM98B_uc001zkc.2_Intron	NM_001042429	NP_001035894	Q52LJ0	FA98B_HUMAN	family with sequence similarity 98, member B	326						tRNA-splicing ligase complex	protein binding			ovary(1)	1		all_cancers(109;3.11e-17)|all_epithelial(112;2.64e-15)|Lung NSC(122;2.11e-11)|all_lung(180;5.61e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;9e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0209)		GTCTATTTTTCTTTCATGTCC	0.333													17	16					0	0	0.001882	0	0
RASGRP1	10125	broad.mit.edu	37	15	38782889	38782889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:38782889C>T	uc001zke.3	-	17	2438	c.2260G>A	c.(2260-2262)GAA>AAA	p.E754K	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Missense_Mutation_p.G452E|RASGRP1_uc010bbg.2_Missense_Mutation_p.G401E|RASGRP1_uc001zkd.3_Missense_Mutation_p.E719K	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	754	Potential.|PT region; mediates the BCR-dependent translocation to plasma membrane (By similarity).				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		GTATTTATTTCCTAAAGGGAA	0.343													10	56					0	0	0.000673	0	0
C15orf53	400359	broad.mit.edu	37	15	38990407	38990407	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:38990407G>A	uc001zkf.1	+	2	211	c.201G>A	c.(199-201)TGG>TGA	p.W67*		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	67											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		tcagggattggaatctgggAG	0.229													22	24					0	0	0.003954	0	0
GPR176	11245	broad.mit.edu	37	15	40093615	40093615	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:40093615G>A	uc001zkj.1	-	3	2132	c.1266C>T	c.(1264-1266)GCC>GCT	p.A422A	GPR176_uc010uck.1_Silent_p.A362A	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	422	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		TCAGGGGTGGGGCAGAGGGCG	0.572													43	93					0	0	0.001951	0	0
PLCB2	5330	broad.mit.edu	37	15	40589094	40589094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:40589094G>A	uc001zld.2	-	14	1640	c.1339C>T	c.(1339-1341)CCC>TCC	p.P447S	PLCB2_uc010bbo.2_Missense_Mutation_p.P447S|PLCB2_uc010ucm.1_Missense_Mutation_p.P447S	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	447	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CTGGGCAGGGGGACACCTGGT	0.552													27	30					0	0	0.001786	0	0
PLCB2	5330	broad.mit.edu	37	15	40589767	40589767	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:40589767C>T	uc001zld.2	-	13	1579	c.1278G>A	c.(1276-1278)ACG>ACA	p.T426T	PLCB2_uc010bbo.2_Silent_p.T426T|PLCB2_uc010ucm.1_Silent_p.T426T	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	426	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCCCAAAGATCGTCCGGCAAT	0.597													19	29					0	0	0.002780	0	0
DISP2	85455	broad.mit.edu	37	15	40659901	40659901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:40659901C>T	uc001zlk.1	+	8	1677	c.1588C>T	c.(1588-1590)CTT>TTT	p.L530F		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	530	Helical; (Potential).|SSD.				smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GGCCTTCTTCCTTTACCAGGT	0.607													19	44					0	0	0.001523	0	0
C15orf57	90416	broad.mit.edu	37	15	40855073	40855073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:40855073G>A	uc001zmc.1	-	2	232	c.142C>T	c.(142-144)CCT>TCT	p.P48S	C15orf57_uc001zly.2_Missense_Mutation_p.P46S|C15orf57_uc001zma.1_Missense_Mutation_p.P57S|C15orf57_uc001zmb.1_Missense_Mutation_p.P48S|C15orf57_uc010bbr.2_Missense_Mutation_p.P46S	NM_001080792	NP_001074261	Q9BV29	CO057_HUMAN	coiled-coil domain containing 32 isoform a	48										ovary(1)	1						TCACCTTCAGGGCAAGAATCC	0.502													57	91					0	0	0.003610	0	0
PLA2G4E	123745	broad.mit.edu	37	15	42279477	42279477	+	Missense_Mutation	SNP	C	T	T	rs146301749	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:42279477C>T	uc001zow.1	-	16	1841	c.1841G>A	c.(1840-1842)CGA>CAA	p.R614Q	PLA2G4E_uc010udc.1_Missense_Mutation_p.R86Q|PLA2G4E_uc001zov.1_Missense_Mutation_p.R267Q	NM_001080490	NP_001073959	Q3MJ16	PA24E_HUMAN	phospholipase A2, group 4E	631	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity				0		all_cancers(109;8.09e-13)|all_epithelial(112;2.03e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.0273)		OV - Ovarian serous cystadenocarcinoma(18;7.61e-18)|GBM - Glioblastoma multiforme(94;3.07e-06)		AAGGATTTCTCGGAAAGAATT	0.527													18	20					0	0	0.006122	0	0
CAPN3	825	broad.mit.edu	37	15	42684884	42684884	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:42684884C>T	uc001zpn.1	+	7	1299	c.993C>T	c.(991-993)GTC>GTT	p.V331V	CAPN3_uc001zpk.1_Silent_p.V104V|CAPN3_uc001zpl.1_Silent_p.V244V|CAPN3_uc010udf.1_Silent_p.V244V|CAPN3_uc010udg.1_Silent_p.V196V|CAPN3_uc001zpo.1_Silent_p.V331V|CAPN3_uc001zpp.1_Silent_p.V283V	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	331	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		GCGGGCTGGTCAGAGGTCACG	0.572													8	19					0	0	0.004482	0	0
ZFP106	64397	broad.mit.edu	37	15	42742955	42742955	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:42742955G>A	uc001zpw.2	-	2	1781	c.1446C>T	c.(1444-1446)TCC>TCT	p.S482S	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.S265S|ZFP106_uc001zpy.1_Silent_p.S505S	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	482						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		GTTCTCCAGGGGAAAAAAAAT	0.398													60	112					0	0	0.003610	0	0
ZFP106	64397	broad.mit.edu	37	15	42742972	42742972	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:42742972T>C	uc001zpw.2	-	2	1764	c.1429A>G	c.(1429-1431)AAA>GAA	p.K477E	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.K260E|ZFP106_uc001zpy.1_Missense_Mutation_p.K500E	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	477						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		AAATTTGTTTTGGTGTTTTTT	0.398													83	88					0	0	0.003610	0	0
ZSCAN29	146050	broad.mit.edu	37	15	43658673	43658673	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:43658673A>C	uc001zrk.1	-	3	1004	c.857T>G	c.(856-858)CTC>CGC	p.L286R	ZSCAN29_uc001zrj.1_Missense_Mutation_p.L166R|ZSCAN29_uc010bdf.1_Missense_Mutation_p.L285R|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_Intron|ZSCAN29_uc001zrm.2_Missense_Mutation_p.L285R	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	286					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		ATATTCCCTGAGCCGCTCAGC	0.547													19	51					0	0	0.001523	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43668773	43668773	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:43668773G>A	uc001zro.2	+	3	520	c.280G>A	c.(280-282)GAT>AAT	p.D94N	TUBGCP4_uc001zrn.2_Missense_Mutation_p.D94N|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	94					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		CACAGGGCTGGATTCTGTTTT	0.483											OREG0023088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	37					0	0	0.006122	0	0
TP53BP1	7158	broad.mit.edu	37	15	43784542	43784542	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:43784542G>A	uc001zrs.2	-	2	265	c.117C>T	c.(115-117)CAC>CAT	p.H39H	TP53BP1_uc010udp.1_Silent_p.H39H|TP53BP1_uc001zrq.3_Silent_p.H44H|TP53BP1_uc001zrr.3_Silent_p.H44H|TP53BP1_uc010udq.1_Silent_p.H44H	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	39					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GCATACTGAAGTGAGAACCAG	0.418								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					38	94					0	0	0.006230	0	0
CKMT1A	548596	broad.mit.edu	37	15	43991269	43991269	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:43991269C>T	uc001zsn.2	+	10	1628	c.1236C>T	c.(1234-1236)GTC>GTT	p.V412V	CKMT1A_uc010uea.1_Silent_p.V443V|CKMT1A_uc001zso.3_Silent_p.V412V	NM_001015001	NP_001015001	P12532	KCRU_HUMAN	creatine kinase, mitochondrial 1A precursor	412					creatine metabolic process	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)	Creatine(DB00148)	CCACACCTGTCATCCACACCA	0.502													46	67					0	0	0.003610	0	0
SERINC4	619189	broad.mit.edu	37	15	44087899	44087899	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:44087899C>T	uc010bds.1	-	7	912	c.444G>A	c.(442-444)GTG>GTA	p.V148V	ELL3_uc001zsx.1_5'UTR|C15orf63_uc001ztb.2_Intron|SERF2_uc001zsz.3_3'UTR|MIR1282_hsa-mir-1282|MI0006429_5'Flank|SERINC4_uc001ztc.1_RNA|SERINC4_uc001ztd.1_Nonsense_Mutation_p.W36*|SERINC4_uc001zte.1_Silent_p.V148V	NM_001033517	NP_001028689	A6NH21	SERC4_HUMAN	serine incorporator 4	392					phospholipid biosynthetic process	integral to membrane					0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		GBM - Glioblastoma multiforme(94;7.81e-07)		TGTCTGCCTCCACTGTTTCAG	0.463													14	72					0	0	0.003163	0	0
SPG11	80208	broad.mit.edu	37	15	44876092	44876092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:44876092G>A	uc001ztx.2	-	30	5817	c.5786C>T	c.(5785-5787)CCA>CTA	p.P1929L	SPG11_uc010bdw.2_Missense_Mutation_p.P218L|SPG11_uc010ueh.1_Missense_Mutation_p.P1929L|SPG11_uc010uei.1_Missense_Mutation_p.P1929L|SPG11_uc001zty.1_Missense_Mutation_p.P658L	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1929	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		ATGGATCTCTGGGTGCAGATC	0.493													20	38					0	0	0.001523	0	0
TRIM69	140691	broad.mit.edu	37	15	45047124	45047124	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:45047124C>T	uc001zuf.2	+	3	928	c.33C>T	c.(31-33)ATC>ATT	p.I11I	TRIM69_uc001zui.1_Intron|TRIM69_uc010bdy.1_Intron|TRIM69_uc001zug.1_Silent_p.I11I|TRIM69_uc001zuh.1_Intron	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	11	Necessary for nuclear localization (By similarity).				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		CCTCCAACATCGATCCAGGCG	0.433													39	67					0	0	0.007835	0	0
TRIM69	140691	broad.mit.edu	37	15	45050926	45050926	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:45050926G>A	uc001zuf.2	+	5	1582	c.687G>A	c.(685-687)GGG>GGA	p.G229G	TRIM69_uc001zui.1_Silent_p.G25G|TRIM69_uc010bdy.1_Silent_p.G25G|TRIM69_uc001zug.1_Silent_p.G229G|TRIM69_uc001zuh.1_Silent_p.G70G	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	229	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		GGGAAGAGGGGAAAGCCTTGA	0.473													14	29					0	0	0.004990	0	0
DUOX2	50506	broad.mit.edu	37	15	45398341	45398341	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:45398341G>A	uc010bea.2	-	17	2333	c.2130C>T	c.(2128-2130)ATC>ATT	p.I710I	DUOX2_uc001zun.2_Silent_p.I710I	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	710	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		ACTCCTTAGGGATCTTGAGCA	0.597													16	12					0	0	0.007413	0	0
DUOX2	50506	broad.mit.edu	37	15	45405245	45405245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:45405245C>T	uc010bea.2	-	3	303	c.100G>A	c.(100-102)GAA>AAA	p.E34K	DUOX2_uc001zun.2_Missense_Mutation_p.E34K|DUOXA2_uc001zuo.2_5'Flank|DUOXA2_uc010beb.2_5'Flank	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	34	Extracellular (Potential).|Peroxidase-like; mediates peroxidase activity (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CGCTGCACTTCCCAGGGCAGT	0.657													12	16					0	0	0.001855	0	0
SLC12A1	6557	broad.mit.edu	37	15	48518707	48518707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:48518707G>A	uc001zwn.3	+	5	879	c.663G>A	c.(661-663)ATG>ATA	p.M221I	SLC12A1_uc010uew.1_Missense_Mutation_p.M27I|SLC12A1_uc010bem.2_Intron|SLC12A1_uc010uex.1_Missense_Mutation_p.M221I|SLC12A1_uc001zwq.3_5'UTR|SLC12A1_uc001zwr.3_5'UTR	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	221	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TTTCCACCATGGTAACTTCTA	0.388													15	34					0	0	0.006122	0	0
FBN1	2200	broad.mit.edu	37	15	48704769	48704769	+	Silent	SNP	G	A	A	rs150065311		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:48704769G>A	uc001zwx.1	-	65	8551	c.8223C>T	c.(8221-8223)ATC>ATT	p.I2741I	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2741					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GACCCACCTCGATATTGGAGG	0.493													67	53					0	0	0.003610	0	0
FBN1	2200	broad.mit.edu	37	15	48718057	48718057	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:48718057G>A	uc001zwx.1	-	59	7537	c.7209C>T	c.(7207-7209)ATC>ATT	p.I2403I	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2403	EGF-like 41; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGCATTCATCGATATCTGTAA	0.313													17	40					0	0	0.006122	0	0
FBN1	2200	broad.mit.edu	37	15	48786449	48786449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:48786449G>A	uc001zwx.1	-	23	3008	c.2680C>T	c.(2680-2682)CCC>TCC	p.P894S		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	894	TB 4.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		CCACATATGGGATCTGTAATA	0.308													15	43					0	0	0.004007	0	0
FBN1	2200	broad.mit.edu	37	15	48812962	48812962	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:48812962G>T	uc001zwx.1	-	10	1369	c.1041C>A	c.(1039-1041)AAC>AAA	p.N347K		NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	347	TB 2.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GTGGCAGCTGGTTAGAGCAGC	0.532													13	34					1.15088e-07	1.66681e-07	0.004007	1	0
SHC4	399694	broad.mit.edu	37	15	49118249	49118249	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:49118249G>A	uc001zxb.1	-	12	2241	c.1812C>T	c.(1810-1812)ATC>ATT	p.I604I	SHC4_uc010uey.1_Silent_p.I361I|SHC4_uc010uez.1_Silent_p.I318I	NM_203349	NP_976224	Q6S5L8	SHC4_HUMAN	rai-like protein	604	SH2.				intracellular signal transduction	cell junction|postsynaptic membrane				ovary(3)|pancreas(2)	5		all_lung(180;0.00466)		all cancers(107;9.4e-08)|GBM - Glioblastoma multiforme(94;5.94e-07)		CAGAGGAGATGATTGGCAAAC	0.373													48	56					0	0	0.003610	0	0
ATP8B4	79895	broad.mit.edu	37	15	50152613	50152614	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:50152613_50152614CC>TT	uc001zxu.2	-	28	3498_3499	c.3356_3357GG>AA	c.(3355-3357)CGG>CAA	p.R1119Q	ATP8B4_uc010ber.2_Missense_Mutation_p.R992Q|ATP8B4_uc010ufd.1_Missense_Mutation_p.R929Q|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Missense_Mutation_p.R122Q	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1119	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		ACCTGCGGGTCCGAGGCCTTCG	0.5													24	48					0	0	0.004672	0	0
USP8	9101	broad.mit.edu	37	15	50782062	50782062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:50782062C>T	uc001zym.3	+	14	2455	c.1955C>T	c.(1954-1956)CCT>CTT	p.P652L	USP8_uc001zyl.3_Missense_Mutation_p.P652L|USP8_uc001zyn.3_Missense_Mutation_p.P652L|USP8_uc010ufh.1_Missense_Mutation_p.P546L	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	652					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		CCAGGACTGCCTTCAGGCTGG	0.343													18	53					0	0	0.005443	0	0
CYP19A1	1588	broad.mit.edu	37	15	51514559	51514559	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:51514559C>T	uc001zyz.3	-	6	866	c.615G>A	c.(613-615)AGG>AGA	p.R205R	CYP19A1_uc001zza.3_Silent_p.R205R|CYP19A1_uc001zzb.2_Silent_p.R205R|CYP19A1_uc001zzd.2_Silent_p.R205R|CYP19A1_uc010bey.1_Silent_p.R205R	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	205					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	CCAAAGGGATCCTCAAGAAGA	0.488													35	36					0	0	0.004289	0	0
DMXL2	23312	broad.mit.edu	37	15	51742477	51742477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:51742477G>A	uc002abf.2	-	42	8975	c.8750C>T	c.(8749-8751)TCG>TTG	p.S2917L	DMXL2_uc002abd.2_Missense_Mutation_p.S1009L|DMXL2_uc010ufy.1_Missense_Mutation_p.S2918L|DMXL2_uc010bfa.2_Missense_Mutation_p.S2281L|DMXL2_uc002abc.2_RNA	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2917	WD 14.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CCTACCCCCCGAGATTAGGAG	0.488													43	77					0	0	0.003610	0	0
MYO5A	4644	broad.mit.edu	37	15	52664505	52664505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:52664505G>A	uc002aby.2	-	21	2877	c.2633C>T	c.(2632-2634)GCC>GTC	p.A878V	MYO5A_uc002abx.3_Missense_Mutation_p.A878V|MYO5A_uc010uge.1_Missense_Mutation_p.A747V	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	878	IQ 5.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		GTGTGTGCGGGCCAGCCAGCC	0.527													14	32					0	0	0.001855	0	0
WDR72	256764	broad.mit.edu	37	15	53992010	53992010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:53992010C>T	uc002acj.2	-	13	1744	c.1702G>A	c.(1702-1704)GTT>ATT	p.V568I	WDR72_uc010bfi.1_Missense_Mutation_p.V568I	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	568	WD 8.									lung(1)|skin(1)	2				all cancers(107;0.0511)		AAATTCTCAACCGGGTGCCAT	0.418													114	145					0	0	0.003610	0	0
WDR72	256764	broad.mit.edu	37	15	54008826	54008826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:54008826G>A	uc002acj.2	-	4	359	c.317C>T	c.(316-318)CCT>CTT	p.P106L	WDR72_uc010bfi.1_Missense_Mutation_p.P106L	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	106										lung(1)|skin(1)	2				all cancers(107;0.0511)		GTGCCTGTAAGGAAGTGTAGC	0.418													25	52					0	0	0.002836	0	0
UNC13C	440279	broad.mit.edu	37	15	54305505	54305505	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:54305505G>A	uc002ack.2	+	1	405	c.405G>A	c.(403-405)AGG>AGA	p.R135R		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	135	Potential.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATGAACTAAGGAGTAGCACAG	0.438													26	38					0	0	0.004656	0	0
UNC13C	440279	broad.mit.edu	37	15	54307230	54307230	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:54307230G>A	uc002ack.2	+	1	2130	c.2130G>A	c.(2128-2130)GAG>GAA	p.E710E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	710					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATGACTCAGAGAGCTACGACT	0.413													17	20					0	0	0.004990	0	0
PRTG	283659	broad.mit.edu	37	15	55933389	55933389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:55933389G>A	uc002adg.2	-	12	2107	c.2059C>T	c.(2059-2061)CAT>TAT	p.H687Y		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	687	Fibronectin type-III 3.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		AGTCTCACATGATATTTTCTT	0.423													14	52					0	0	0.004990	0	0
RFX7	64864	broad.mit.edu	37	15	56385976	56385976	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:56385976A>G	uc010bfn.2	-	9	3950	c.3950T>C	c.(3949-3951)CTC>CCC	p.L1317P	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.L1131P	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	1220					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						ACTTTTGGTGAGGTAAGATGG	0.388													3	115					0	0	0.000248	0	0
ZNF280D	54816	broad.mit.edu	37	15	56993156	56993156	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:56993156A>T	uc002adu.2	-	6	573	c.356T>A	c.(355-357)GTT>GAT	p.V119D	ZNF280D_uc002adv.2_Missense_Mutation_p.V106D|ZNF280D_uc010bfq.2_Missense_Mutation_p.V119D|ZNF280D_uc002adw.1_Missense_Mutation_p.V147D|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc002ady.2_Missense_Mutation_p.V119D|ZNF280D_uc002adx.2_Missense_Mutation_p.V119D	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		CTGAACAATAACAGAACTATC	0.393													22	40					0	0	0.002299	0	0
GCOM1	145781	broad.mit.edu	37	15	57896505	57896505	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:57896505G>A	uc002aei.2	+	2	233	c.114G>A	c.(112-114)GAG>GAA	p.E38E	GCOM1_uc002aej.2_Silent_p.E38E|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Silent_p.E38E|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Silent_p.E38E|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	38					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						TACCTCCTGAGAGTCCAGTTC	0.493													128	152					0	0	0.003610	0	0
GCOM1	145781	broad.mit.edu	37	15	58006751	58006751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:58006751C>T	uc002aeo.2	+	13	1441	c.1322C>T	c.(1321-1323)TCG>TTG	p.S441L	GCOM1_uc002aem.2_Silent_p.L509L|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA|GRINL1A_uc002aes.2_Silent_p.L96L|GRINL1A_uc010ugu.1_RNA|GRINL1A_uc002aet.3_Silent_p.L327L|GRINL1A_uc002aeu.3_Silent_p.L170L	NM_001018091	NP_001018101	P0CAP1	GCOM1_HUMAN	GRINL1A combined protein isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						AAGCAAAGCTCGCAGCGCAAA	0.398													38	58					0	0	0.006230	0	0
LIPC	3990	broad.mit.edu	37	15	58840567	58840567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:58840567G>A	uc010bga.1	+	8	1455	c.847G>A	c.(847-849)GTG>ATG	p.V283M	LIPC_uc010bfz.1_Missense_Mutation_p.V283M|LIPC_uc002afa.1_Missense_Mutation_p.V283M|LIPC_uc010bgb.1_Missense_Mutation_p.V181M|LIPC_uc010ugy.1_Missense_Mutation_p.V222M	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	283					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		CGAGCGATCGGTGCACCTTTT	0.577													55	62					0	0	0.003610	0	0
SLTM	79811	broad.mit.edu	37	15	59179506	59179506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:59179506G>A	uc002afp.2	-	18	2697	c.2609C>T	c.(2608-2610)CCT>CTT	p.P870L	SLTM_uc002afn.2_Missense_Mutation_p.P412L|SLTM_uc002afo.2_Missense_Mutation_p.P852L|SLTM_uc002afq.2_Missense_Mutation_p.P439L|SLTM_uc010bgd.2_Missense_Mutation_p.P439L	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	870	Arg/Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						TGCCTCTCGAGGATGTCTAGG	0.498													25	171					0	0	0.003330	0	0
SLTM	79811	broad.mit.edu	37	15	59180621	59180621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:59180621G>A	uc002afp.2	-	17	2426	c.2338C>T	c.(2338-2340)CCT>TCT	p.P780S	SLTM_uc002afn.2_Missense_Mutation_p.P322S|SLTM_uc002afo.2_Missense_Mutation_p.P762S|SLTM_uc002afq.2_Missense_Mutation_p.P349S|SLTM_uc010bgd.2_Missense_Mutation_p.P349S	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	780	Arg/Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						GAACTCTCAGGAAACCTGCCC	0.403													15	124					0	0	0.006122	0	0
SLTM	79811	broad.mit.edu	37	15	59180640	59180640	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:59180640G>A	uc002afp.2	-	17	2407	c.2319C>T	c.(2317-2319)CAC>CAT	p.H773H	SLTM_uc002afn.2_Silent_p.H315H|SLTM_uc002afo.2_Silent_p.H755H|SLTM_uc002afq.2_Silent_p.H342H|SLTM_uc010bgd.2_Silent_p.H342H	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	773	Arg/Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						CCCTCTCTCGGTGATCAAAGT	0.403													22	108					0	0	0.004656	0	0
MYO1E	4643	broad.mit.edu	37	15	59470628	59470628	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:59470628C>T	uc002aga.2	-	19	2385	c.2013G>A	c.(2011-2013)CTG>CTA	p.L671L		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	671	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		TACTCCTCCCCAGCTGGAACT	0.577													7	28					0	0	0.001984	0	0
MYO1E	4643	broad.mit.edu	37	15	59497637	59497637	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:59497637A>G	uc002aga.2	-	15	1950	c.1578T>C	c.(1576-1578)CTT>CTC	p.L526L	LDHAL6B_uc002agb.2_5'Flank	NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	526	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		GATCCATAAAAAGCACATCCC	0.378													31	145					0	0	0.005524	0	0
VPS13C	54832	broad.mit.edu	37	15	62161787	62161787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:62161787C>T	uc002agz.2	-	80	10734	c.10660G>A	c.(10660-10662)GGA>AGA	p.G3554R	VPS13C_uc002aha.2_Missense_Mutation_p.G3511R|VPS13C_uc002ahb.1_Missense_Mutation_p.G3554R|VPS13C_uc002ahc.1_Missense_Mutation_p.G3511R	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3554					protein localization					ovary(2)	2						TTTCCAATTCCTTTAAAGAAT	0.423													34	88					0	0	0.006999	0	0
TLN2	83660	broad.mit.edu	37	15	63058592	63058592	+	Missense_Mutation	SNP	C	T	T	rs146711240		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:63058592C>T	uc002alb.3	+	38	5167	c.5167C>T	c.(5167-5169)CGG>TGG	p.R1723W	TLN2_uc002alc.3_Missense_Mutation_p.R116W|TLN2_uc002ald.2_Missense_Mutation_p.R116W	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1723					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CACAGCGGCTCGGGGAGAAGC	0.542													15	44					0	0	0.006122	0	0
CA12	771	broad.mit.edu	37	15	63638846	63638846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:63638846G>A	uc002amc.2	-	3	325	c.169C>T	c.(169-171)CCC>TCC	p.P57S	CA12_uc002amd.2_Missense_Mutation_p.P57S|CA12_uc002ame.2_Intron	NM_001218	NP_001209	O43570	CAH12_HUMAN	carbonic anhydrase XII isoform 1 precursor	57	Extracellular (Potential).				one-carbon metabolic process	integral to membrane	carbonate dehydratase activity|zinc ion binding			ovary(1)	1					Acetazolamide(DB00819)	AGGTCTATGGGGGACTGCAGC	0.547													41	60					0	0	0.001951	0	0
HERC1	8925	broad.mit.edu	37	15	64067531	64067531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:64067531G>A	uc002amp.2	-	2	440	c.292C>T	c.(292-294)CCA>TCA	p.P98S	HERC1_uc010uil.1_Missense_Mutation_p.P98S|HERC1_uc010bgt.1_Missense_Mutation_p.P98S|HERC1_uc002amq.1_Missense_Mutation_p.P98S	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	98					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCGGCAAATGGGGAATCTGAA	0.458													25	29					0	0	0.002780	0	0
ZNF609	23060	broad.mit.edu	37	15	64967899	64967899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:64967899C>T	uc002ann.2	+	4	2846	c.2846C>T	c.(2845-2847)CCC>CTC	p.P949L		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	949						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GAAAAGAAGCCCGAGCTGAGC	0.527													72	68					0	0	0.003610	0	0
PIF1	80119	broad.mit.edu	37	15	65113580	65113580	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65113580C>T	uc002ant.2	-	5	1023	c.957G>A	c.(955-957)CTG>CTA	p.L319L	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_Silent_p.L10L|PIF1_uc010uiq.1_Silent_p.L319L	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	319	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CCACGGCCTCCAGTTTGTCAA	0.607													59	95					0	0	0.003610	0	0
RASL12	51285	broad.mit.edu	37	15	65351754	65351754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65351754C>T	uc002aoi.1	-	3	378	c.163G>A	c.(163-165)GAC>AAC	p.D55N	RASL12_uc002aoj.1_Missense_Mutation_p.D36N|RASL12_uc010uir.1_Missense_Mutation_p.D44N	NM_016563	NP_057647	Q9NYN1	RASLC_HUMAN	RAS-like, family 12 protein	55					small GTPase mediated signal transduction	membrane	GTP binding|GTPase activity			skin(1)	1						CTGTAGGTGTCCTCTACAACA	0.552													17	70					0	0	0.001882	0	0
CILP	8483	broad.mit.edu	37	15	65489927	65489927	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65489927G>A	uc002aon.2	-	9	2878	c.2697C>T	c.(2695-2697)CTC>CTT	p.L899L		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	899					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CACATGCCCGGAGGTTCTCAA	0.532													29	44					0	0	0.007291	0	0
CILP	8483	broad.mit.edu	37	15	65490910	65490910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65490910G>A	uc002aon.2	-	9	1895	c.1714C>T	c.(1714-1716)CGT>TGT	p.R572C		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	572					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TTTTTCCGACGAAGCATCTTG	0.507													32	41					0	0	0.002836	0	0
CILP	8483	broad.mit.edu	37	15	65499260	65499260	+	Missense_Mutation	SNP	C	T	T	rs143925933	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65499260C>T	uc002aon.2	-	4	465	c.284G>A	c.(283-285)CGG>CAG	p.R95Q		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	95					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GTCAGTGGTCCGAGCCTCTAG	0.647													4	25					0	0	0.000602	0	0
IGDCC3	9543	broad.mit.edu	37	15	65621884	65621884	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65621884G>A	uc002aos.2	-	13	2301	c.2049C>T	c.(2047-2049)CCC>CCT	p.P683P	IGDCC3_uc002aor.1_5'UTR	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	683	Cytoplasmic (Potential).									ovary(3)	3						TCTGGCTCCGGGGACCCTGTG	0.597													18	81					0	0	0.007413	0	0
SLC24A1	9187	broad.mit.edu	37	15	65917379	65917379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:65917379G>A	uc010ujf.1	+	2	1248	c.961G>A	c.(961-963)GGG>AGG	p.G321R	SLC24A1_uc010ujd.1_Missense_Mutation_p.G321R|SLC24A1_uc010uje.1_Missense_Mutation_p.G321R|SLC24A1_uc010ujg.1_Missense_Mutation_p.G321R|SLC24A1_uc010ujh.1_Missense_Mutation_p.G321R	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	321	Extracellular (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						CACCTCTGAGGGGCAGGTGAC	0.567													42	45					0	0	0.006230	0	0
IQCH	64799	broad.mit.edu	37	15	67571772	67571772	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:67571772C>T	uc002aqo.1	+	4	356	c.309C>T	c.(307-309)TTC>TTT	p.F103F	IQCH_uc010ujv.1_5'UTR|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron|IQCH_uc002aqm.2_Silent_p.F103F	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	103										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CATTTATTTTCCCTCAGGAAT	0.323													9	48					0	0	0.000673	0	0
KIF23	9493	broad.mit.edu	37	15	69727868	69727868	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:69727868C>T	uc002asb.2	+	11	1236	c.1119C>T	c.(1117-1119)GTC>GTT	p.V373V	KIF23_uc002asc.2_Silent_p.V373V|KIF23_uc010bii.2_Silent_p.V263V|KIF23_uc010ukc.1_Silent_p.V190V|KIF23_uc010bih.1_RNA	NM_138555	NP_612565	Q02241	KIF23_HUMAN	kinesin family member 23 isoform 1	373					blood coagulation|cytokinesis|microtubule-based movement|mitosis|mitotic spindle elongation	cytosol|kinesin complex|microtubule|midbody|nucleoplasm|spindle	ATP binding|microtubule motor activity|protein binding				0						GTATGGATGTCCTAAGAGAGA	0.348													23	30					0	0	0.001512	0	0
NR2E3	10002	broad.mit.edu	37	15	72104678	72104678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:72104678G>A	uc002ati.2	+	5	764	c.574G>A	c.(574-576)GAT>AAT	p.D192N	NR2E3_uc002ath.1_Missense_Mutation_p.D192N	NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	192					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						TCCAACAGCTGATGAGAATAT	0.597													24	92					0	0	0.005443	0	0
MYO9A	4649	broad.mit.edu	37	15	72338351	72338351	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:72338351A>C	uc002atl.3	-	2	1027	c.554T>G	c.(553-555)GTT>GGT	p.V185G	MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Missense_Mutation_p.V185G|MYO9A_uc002atn.1_Missense_Mutation_p.V185G	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	185	Myosin head-like 1.|Helical; (Potential).				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TGGGTTAATAACTATTAGAAT	0.333													14	52					0	0	0.002450	0	0
PARP6	56965	broad.mit.edu	37	15	72552844	72552844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:72552844G>A	uc002auc.2	-	9	1190	c.731C>T	c.(730-732)CCT>CTT	p.P244L	PARP6_uc002aua.2_Intron|PARP6_uc002aub.2_Intron|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.P244L	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	244							NAD+ ADP-ribosyltransferase activity				0						TGCTGGGGGAGGGAGGCCCAC	0.587													107	96					0	0	0.003610	0	0
HEXA	3073	broad.mit.edu	37	15	72642919	72642920	+	Missense_Mutation	DNP	GG	AA	AA	rs138058578	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:72642919_72642920GG>AA	uc002aun.3	-	7	951_952	c.744_745CC>TT	c.(742-747)CTCCGG>CTTTGG	p.R249W	uc002aug.2_RNA|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Missense_Mutation_p.R260W|HEXA_uc002auo.3_Missense_Mutation_p.R112W|HEXA_uc010bix.2_Missense_Mutation_p.R249W|HEXA_uc010biy.2_Missense_Mutation_p.R112W|HEXA_uc010uko.1_Missense_Mutation_p.R75W|HEXA_uc010biz.1_RNA	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein	249			R -> W (in HEXA pseudodeficiency).		cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						CGGATACCCCGGAGCCGTGCGT	0.54													37	56					0	0	0.004672	0	0
TMEM202	338949	broad.mit.edu	37	15	72691003	72691003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:72691003C>T	uc002auq.2	+	2	91	c.91C>T	c.(91-93)CCT>TCT	p.P31S	TMEM202_uc002aur.2_Intron	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	31						integral to membrane				central_nervous_system(1)|skin(1)	2						GCCTACCGTCCCTGCCAAGAA	0.532													27	36					0	0	0.001512	0	0
HCN4	10021	broad.mit.edu	37	15	73615779	73615779	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:73615779C>T	uc002avp.2	-	8	3649	c.2655G>A	c.(2653-2655)GGG>GGA	p.G885G		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	885	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		AGCCACAGGCCCCGGGGGGTG	0.667													6	14					0	0	0.001168	0	0
TBC1D21	161514	broad.mit.edu	37	15	74180061	74180061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:74180061G>A	uc002avz.2	+	9	961	c.878G>A	c.(877-879)GGG>GAG	p.G293E	TBC1D21_uc010ulc.1_Missense_Mutation_p.G257E	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	293						intracellular	Rab GTPase activator activity			ovary(2)	2						AGCATGGGCGGGGATGACATC	0.647													25	30					0	0	0.003954	0	0
ISLR	3671	broad.mit.edu	37	15	74468300	74468300	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:74468300G>A	uc002axg.1	+	2	1383	c.1101G>A	c.(1099-1101)AAG>AAA	p.K367K	ISLR_uc002axh.1_Silent_p.K367K	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	367					cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TTGAGGGAAAGGGCTGCTATA	0.622													15	30					0	0	0.002450	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044490	75044490	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:75044490G>A	uc002ayr.1	+	5	1132	c.1068G>A	c.(1066-1068)CGG>CGA	p.R356R		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	356					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	GGGAGCGGCGGCCCCGGCTCT	0.547													73	73					0	0	0.003610	0	0
CYP1A2	1544	broad.mit.edu	37	15	75044547	75044547	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:75044547C>T	uc002ayr.1	+	5	1189	c.1125C>T	c.(1123-1125)ACC>ACT	p.T375T		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	375					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	TCCTGGAGACCTTCCGACACT	0.597													138	142					0	0	0.003610	0	0
LMAN1L	79748	broad.mit.edu	37	15	75114199	75114199	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:75114199C>T	uc002ayt.1	+	10	1091	c.1089C>T	c.(1087-1089)TCC>TCT	p.S363S	LMAN1L_uc010bke.1_Silent_p.S351S	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	363	Lumenal (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						AGATTCCATCCACCCCAGGGA	0.612													46	60					0	0	0.003610	0	0
ODF3L1	161753	broad.mit.edu	37	15	76019596	76019596	+	Silent	SNP	C	T	T	rs114593678	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:76019596C>T	uc002bax.1	+	4	762	c.540C>T	c.(538-540)TAC>TAT	p.Y180Y		NM_175881	NP_787077	Q8IXM7	OD3L1_HUMAN	outer dense fiber of sperm tails 3-like 1	180											0						CTCCCTGCTACAGTCTGGCCT	0.602													35	41					0	0	0.002445	0	0
C15orf27	123591	broad.mit.edu	37	15	76496495	76496495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:76496495G>A	uc002bbq.2	+	11	1590	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K	C15orf27_uc010bkp.2_Missense_Mutation_p.E295K|C15orf27_uc002bbr.2_Missense_Mutation_p.E295K|C15orf27_uc002bbs.2_Missense_Mutation_p.E157K	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	479						integral to membrane					0						CCCCGAGCTGGAACACAGGGT	0.642													19	132					0	0	0.001882	0	0
ETFA	2108	broad.mit.edu	37	15	76578774	76578774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:76578774G>A	uc002bbt.2	-	6	581	c.500C>T	c.(499-501)TCT>TTT	p.S167F	ETFA_uc010bkq.1_Missense_Mutation_p.S118F|ETFA_uc002bbu.1_Missense_Mutation_p.S167F	NM_000126	NP_000117	P13804	ETFA_HUMAN	electron transfer flavoprotein, alpha	167					respiratory electron transport chain|transport	mitochondrial matrix	electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity				0						TCCACGGACAGAAAACACTTT	0.383													13	39					0	0	0.003163	0	0
IDH3A	3419	broad.mit.edu	37	15	78458576	78458576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:78458576C>T	uc002bdd.2	+	10	976	c.949C>T	c.(949-951)CAC>TAC	p.H317Y	IDH3A_uc010umt.1_Missense_Mutation_p.H282Y|IDH3A_uc010umu.1_Missense_Mutation_p.H208Y|IDH3A_uc002bde.2_Missense_Mutation_p.H267Y|IDH3A_uc010umv.1_Missense_Mutation_p.H267Y|IDH3A_uc002bdf.2_Missense_Mutation_p.H168Y|IDH3A_uc002bdg.2_Missense_Mutation_p.H230Y	NM_005530	NP_005521	P50213	IDH3A_HUMAN	isocitrate dehydrogenase 3 (NAD+) alpha	317					carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	GATGCTGCGCCACATGGGACT	0.507													93	125					0	0	0.003610	0	0
ACSBG1	23205	broad.mit.edu	37	15	78486327	78486327	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:78486327G>A	uc002bdh.2	-	4	545	c.489C>T	c.(487-489)CTC>CTT	p.L163L	ACSBG1_uc010umw.1_Silent_p.L159L|ACSBG1_uc010umx.1_Intron|ACSBG1_uc010umy.1_Silent_p.L56L	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	163					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						AGTTGAAGCCGAGGATGGCCA	0.662													12	45					0	0	0.001855	0	0
CHRNA3	1136	broad.mit.edu	37	15	78894484	78894484	+	Missense_Mutation	SNP	G	T	T	rs72648887		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:78894484G>T	uc002bec.2	-	5	686	c.500C>A	c.(499-501)CCG>CAG	p.P167Q	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.P167Q	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	167	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						GTAATCAAACGGGAAGTAGGT	0.488													6	185					0.00307968	0.00441594	0.003080	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79058665	79058665	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:79058665G>A	uc002bej.3	-	19	3799	c.3588C>T	c.(3586-3588)TTC>TTT	p.F1196F	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1196					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						TGCCAACTGGGAAATCATTTT	0.612													8	34					0	0	0.003080	0	0
MORF4L1	10933	broad.mit.edu	37	15	79186534	79186534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:79186534C>T	uc002bel.2	+	11	1069	c.881C>T	c.(880-882)TCC>TTC	p.S294F	MORF4L1_uc002bem.2_Missense_Mutation_p.S255F|MORF4L1_uc010une.1_Missense_Mutation_p.S167F	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	294	Sufficient for interaction with PHF12.				double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						GCACCCATGTCCCAGGTGTAT	0.393													64	84					0	0	0.003610	0	0
ZFAND6	54469	broad.mit.edu	37	15	80429958	80429958	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:80429958C>T	uc002bfe.1	+	7	926	c.615C>T	c.(613-615)ATC>ATT	p.I205I	ZFAND6_uc002bff.1_Silent_p.I205I|ZFAND6_uc002bfg.1_Silent_p.I193I|ZFAND6_uc002bfh.1_Silent_p.I205I|ZFAND6_uc002bfi.1_Silent_p.I205I	NM_019006	NP_061879	Q6FIF0	ZFAN6_HUMAN	zinc finger, AN1-type domain 6	205							DNA binding|zinc ion binding				0						GTGAAAAGATCCAAAAGATTT	0.358													10	36					0	0	0.006214	0	0
ARNT2	9915	broad.mit.edu	37	15	80867401	80867401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:80867401C>T	uc002bfr.2	+	14	1629	c.1463C>T	c.(1462-1464)TCC>TTC	p.S488F	ARNT2_uc010unm.1_Missense_Mutation_p.S477F|ARNT2_uc002bfs.2_Missense_Mutation_p.S477F	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	488					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			GCAATCTTCTCCCAGGAAAGA	0.468													34	136					0	0	0.004289	0	0
BNC1	646	broad.mit.edu	37	15	83931723	83931723	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:83931723G>A	uc002bjt.1	-	4	2368	c.2280C>T	c.(2278-2280)CCC>CCT	p.P760P	BNC1_uc010uos.1_Silent_p.P748P	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	760	C2H2-type 4.				epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TCCTGCGGGAGGGAAAGGTAG	0.328													15	9					0	0	0.003163	0	0
BNC1	646	broad.mit.edu	37	15	83936884	83936884	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:83936884C>T	uc002bjt.1	-	2	287	c.199_splice	c.e2+1	p.A67_splice	BNC1_uc010uos.1_Splice_Site_p.A55_splice	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1						epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AATAAAGTTACCGTGGGCCAC	0.413													38	41					0	0	0.002852	0	0
SH3GL3	6457	broad.mit.edu	37	15	84245385	84245385	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:84245385G>A	uc002bjw.2	+	6	711	c.516G>A	c.(514-516)AAG>AAA	p.K172K	SH3GL3_uc010uot.1_Silent_p.K172K|SH3GL3_uc002bjx.2_Silent_p.K103K|SH3GL3_uc002bju.2_Silent_p.K180K|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	172	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						ATTATAAAAAGAAACGAGTAG	0.413													30	32					0	0	0.002445	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84694116	84694116	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:84694116C>T	uc002bjz.3	+	27	4808	c.4584C>T	c.(4582-4584)GCC>GCT	p.A1528A	ADAMTSL3_uc010bmt.1_Silent_p.A1528A|ADAMTSL3_uc010bmu.1_Silent_p.A1528A	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1528	TSP type-1 9.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GAGCATGTGCCCCTAAAGACC	0.527													11	43					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	15	84945563	84945563	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:84945563G>A	uc002bke.1	-	1		c.1655C>T								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		TTGGGGCCCTGAAGAAAGGGG	0.572													19	14					0	0	0.007413	0	0
ALPK3	57538	broad.mit.edu	37	15	85407727	85407727	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:85407727C>T	uc002ble.2	+	12	5327	c.5160C>T	c.(5158-5160)ACC>ACT	p.T1720T	ALPK3_uc010upc.1_Silent_p.T21T	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1720	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CATATGCTACCCTGGAGGAAG	0.542													24	94					0	0	0.003954	0	0
ALPK3	57538	broad.mit.edu	37	15	85410592	85410592	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:85410592C>T	uc002ble.2	+	13	5541	c.5374C>T	c.(5374-5376)CGA>TGA	p.R1792*	ALPK3_uc010upc.1_Nonsense_Mutation_p.R93*	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1792	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TACCAAACTCCGAGGGTGAGT	0.542													44	47					0	0	0.003610	0	0
SLC28A1	9154	broad.mit.edu	37	15	85467298	85467298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:85467298C>T	uc002blg.2	+	12	1242	c.1040C>T	c.(1039-1041)GCC>GTC	p.A347V	SLC28A1_uc010upd.1_Missense_Mutation_p.A269V|SLC28A1_uc010bnb.2_Missense_Mutation_p.A347V|SLC28A1_uc010upe.1_Missense_Mutation_p.A347V|SLC28A1_uc010upf.1_Missense_Mutation_p.A347V|SLC28A1_uc010upg.1_Missense_Mutation_p.A347V	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	347					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGAGGTTACGCCACCATTGCT	0.547													11	99					0	0	0.000978	0	0
SLC28A1	9154	broad.mit.edu	37	15	85478590	85478590	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:85478590G>A	uc002blg.2	+	15	1624	c.1422G>A	c.(1420-1422)TTG>TTA	p.L474L	SLC28A1_uc010bnb.2_Silent_p.L474L|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Silent_p.L474L|SLC28A1_uc010upg.1_Silent_p.L474L	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	474					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TAGCCTTCTTGATGGGTGTGG	0.592													25	40					0	0	0.003954	0	0
AGBL1	123624	broad.mit.edu	37	15	86687022	86687022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:86687022G>A	uc002blz.1	+	2	150	c.70G>A	c.(70-72)GAC>AAC	p.D24N		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	24					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						AGCTCCTCCAGACTATGACAT	0.542													17	63					0	0	0.006122	0	0
ACAN	176	broad.mit.edu	37	15	89386847	89386847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:89386847C>T	uc010upo.1	+	6	1393	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	ACAN_uc002bmx.2_Missense_Mutation_p.P340L|ACAN_uc010upp.1_Missense_Mutation_p.P340L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	340					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TACCCCGACCCCTCATCCCGC	0.642													37	74					0	0	0.002222	0	0
ACAN	176	broad.mit.edu	37	15	89400855	89400855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:89400855G>A	uc010upo.1	+	12	5413	c.5039G>A	c.(5038-5040)GGG>GAG	p.G1680E	ACAN_uc010upp.1_Missense_Mutation_p.G1680E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1680					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GAACTGGAAGGGAGGGGAACC	0.517													82	121					0	0	0.003610	0	0
C15orf58	390637	broad.mit.edu	37	15	90784215	90784215	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:90784215C>T	uc002bpc.2	+	4	254	c.75C>T	c.(73-75)ACC>ACT	p.T25T		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	25					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						GCAGGCAAACCATTCCTGACT	0.483													34	159					0	0	0.006230	0	0
TTLL13	440307	broad.mit.edu	37	15	90801445	90801445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:90801445G>A	uc002bpd.1	+	9	1399	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	TTLL13_uc002bpe.1_RNA	NM_001029964	NP_001025135	A6NNM8	TTL13_HUMAN	tubulin tyrosine ligase-like family, member 13	371	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity				0	Melanoma(11;0.00551)|Lung NSC(78;0.0178)|all_lung(78;0.0378)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|BRCA - Breast invasive adenocarcinoma(143;0.0323)|Kidney(142;0.0514)			TGCCTGTTTTGAAATCCTTGG	0.473													116	134					0	0	0.003610	0	0
MAN2A2	4122	broad.mit.edu	37	15	91461529	91461529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:91461529C>T	uc010bnz.2	+	21	3215	c.3100C>T	c.(3100-3102)CCA>TCA	p.P1034S	MAN2A2_uc002bqc.2_Missense_Mutation_p.P1034S|MAN2A2_uc010uql.1_Missense_Mutation_p.P696S|MAN2A2_uc010uqm.1_Missense_Mutation_p.P613S|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1034					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GATGCAGCTCCCAGGCCCTGG	0.612													344	451					0	0	0.003610	0	0
SV2B	9899	broad.mit.edu	37	15	91811704	91811704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:91811704G>A	uc002bqv.2	+	8	1633	c.1242G>A	c.(1240-1242)ATG>ATA	p.M414I	SV2B_uc002bqt.2_Missense_Mutation_p.M414I|SV2B_uc010uqv.1_Missense_Mutation_p.M263I|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	414	Extracellular (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TTCCTGATATGATCCGCTATT	0.413													254	325					0	0	0.003610	0	0
CHD2	1106	broad.mit.edu	37	15	93557971	93557971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:93557971C>T	uc002bsp.2	+	37	5313	c.4738C>T	c.(4738-4740)CGT>TGT	p.R1580C	CHD2_uc002bso.1_Missense_Mutation_p.R1580C	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1580					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GAAACCATTTCGTCCAGAGGC	0.507													34	75					0	0	0.005524	0	0
IGF1R	3480	broad.mit.edu	37	15	99500587	99500587	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:99500587C>T	uc002bul.2	+	21	4070	c.4020C>T	c.(4018-4020)TTC>TTT	p.F1340F	IGF1R_uc010bon.2_Silent_p.F1339F	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	1340	Cytoplasmic (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GCGCCAGCTTCGACGAGAGAC	0.667													22	30					0	0	0.002299	0	0
LINS1	55180	broad.mit.edu	37	15	101113902	101113902	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:101113902G>A	uc002bwe.2	-	6	1467	c.1176C>T	c.(1174-1176)TCC>TCT	p.S392S	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Silent_p.S392S|LINS1_uc002bwg.2_Silent_p.S392S|LINS1_uc002bwh.2_Silent_p.S392S|LINS1_uc010usa.1_Silent_p.S273S|LINS1_uc002bwi.2_Silent_p.S392S	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	392											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			TGATTTCTAAGGATTTCATTA	0.338													21	33					0	0	0.002780	0	0
LRRK1	79705	broad.mit.edu	37	15	101593217	101593217	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:101593217C>T	uc002bwr.2	+	25	4099	c.3780C>T	c.(3778-3780)GCC>GCT	p.A1260A	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_5'Flank	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1260	Protein kinase.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCTACCGGGCCCGGTACCAGG	0.617													18	38					0	0	0.001523	0	0
LRRK1	79705	broad.mit.edu	37	15	101595334	101595334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:101595334C>T	uc002bwr.2	+	27	4557	c.4238C>T	c.(4237-4239)TCG>TTG	p.S1413L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1413	Protein kinase.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.E1413D(1)		ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TACGGGATTTCGAGGCAGTCA	0.522													38	38					0	0	0.007835	0	0
PCSK6	5046	broad.mit.edu	37	15	101972284	101972284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr15:101972284C>T	uc002bwy.2	-	4	738	c.424G>A	c.(424-426)GAA>AAA	p.E142K	PCSK6_uc010bpd.2_Missense_Mutation_p.E12K|PCSK6_uc010bpe.2_Missense_Mutation_p.E142K|PCSK6_uc002bxa.2_Missense_Mutation_p.E142K|PCSK6_uc002bxb.2_Missense_Mutation_p.E142K|PCSK6_uc002bxc.1_Missense_Mutation_p.E142K|PCSK6_uc002bxd.1_Missense_Mutation_p.E142K|PCSK6_uc002bxe.2_Missense_Mutation_p.E142K|PCSK6_uc002bxg.1_Missense_Mutation_p.E142K	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	142					glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGTTTCACTTCCTGTTGCTGG	0.458													14	13					0	0	0.003163	0	0
NPRL3	8131	broad.mit.edu	37	16	167369	167370	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:167369_167370GG>AA	uc002cfr.2	-	5	422_423	c.323_324CC>TT	c.(322-324)TCC>TTT	p.S108F	NPRL3_uc010uua.1_Intron|NPRL3_uc002cfp.1_RNA|NPRL3_uc002cfq.2_Intron|NPRL3_uc010uub.1_Intron|NPRL3_uc010uuc.1_Missense_Mutation_p.S30F|NPRL3_uc002cfs.1_Intron	NM_001077350	NP_001070818	Q12980	NPRL3_HUMAN	conserved gene telomeric to alpha globin cluster	108							protein binding			ovary(1)	1						GATCTGTTTTGGAGATCTGTAA	0.386													4	9					0	0	0.004672	0	0
RGS11	8786	broad.mit.edu	37	16	321272	321272	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:321272G>A	uc002cgj.1	-	12	795	c.792C>T	c.(790-792)CTC>CTT	p.L264L	RGS11_uc002cgi.1_Silent_p.L243L|RGS11_uc010bqs.1_Silent_p.L253L|RGS11_uc002cgk.1_Silent_p.L80L	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	264	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				ACCCCGACACGAGGGGATCGT	0.667													7	20					0	0	0.004482	0	0
PDIA2	64714	broad.mit.edu	37	16	333322	333322	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:333322C>T	uc002cgn.1	+	6	1261	c.153C>T	c.(151-153)ACC>ACT	p.T51T	PDIA2_uc010bqt.1_5'UTR|PDIA2_uc002cgo.1_Silent_p.T51T	NM_006849	NP_006840	Q13087	PDIA2_HUMAN	protein disulfide isomerase A2 precursor	51	Thioredoxin 1.				apoptosis|cell redox homeostasis|glycerol ether metabolic process|protein folding|protein retention in ER lumen|response to hypoxia	endoplasmic reticulum lumen	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity|steroid binding			central_nervous_system(1)|skin(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				GCCGCCACACCCTGGGCCTGG	0.697													7	22					0	0	0.004482	0	0
TMEM8A	58986	broad.mit.edu	37	16	426736	426736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:426736G>A	uc002cgu.3	-	5	841	c.712C>T	c.(712-714)CCC>TCC	p.P238S	TMEM8A_uc002cgv.3_Missense_Mutation_p.P45S	NM_021259	NP_067082	Q9HCN3	TMM8A_HUMAN	transmembrane protein 8 (five membrane-spanning	238	Extracellular (Potential).				cell adhesion	integral to plasma membrane				central_nervous_system(2)|pancreas(1)	3						AGACGCACGGGGCAGCCCAGG	0.687													10	18					0	0	0.006214	0	0
SOLH	6650	broad.mit.edu	37	16	596994	596994	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:596994C>T	uc002chi.2	+	4	519	c.156C>T	c.(154-156)CGC>CGT	p.R52R	SOLH_uc002chh.1_Silent_p.R52R	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	52	RanBP2-type 2.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				CCTGCGCCCGCTGCACCTTCC	0.692													9	20					0	0	0.006214	0	0
PIGQ	9091	broad.mit.edu	37	16	624464	624464	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:624464C>T	uc002cho.2	+	2	492	c.390C>T	c.(388-390)TTC>TTT	p.F130F	PIGQ_uc010bqw.2_Silent_p.F130F|PIGQ_uc002chm.2_Silent_p.F130F|PIGQ_uc002chn.2_Silent_p.F130F|PIGQ_uc010uui.1_Silent_p.F144F	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	130					C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				TGCTCATCTTCTATGACCAGC	0.697													3	12					0	0	0.004672	0	0
RAB40C	57799	broad.mit.edu	37	16	675979	675979	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:675979C>T	uc002chr.2	+	5	539	c.423C>T	c.(421-423)GCC>GCT	p.A141A	RAB40C_uc002chq.2_Silent_p.A122A	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	141					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				CGGAGCAGGCCCGCGCGTACG	0.622													10	24					0	0	0.000673	0	0
WDR90	197335	broad.mit.edu	37	16	709106	709107	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:709106_709107CC>TT	uc002cii.1	+	25	3086_3087	c.3032_3033CC>TT	c.(3031-3033)GCC>GTT	p.A1011V	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Missense_Mutation_p.A538V|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Missense_Mutation_p.A185V|WDR90_uc002cin.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1011										ovary(1)	1		Hepatocellular(780;0.0218)				TTCCCCGGGGCCCCCCCAGCCT	0.658													13	54					0	0	0.004672	0	0
MSLN	10232	broad.mit.edu	37	16	814721	814721	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:814721C>T	uc002cjw.1	+	6	426	c.375C>T	c.(373-375)TTC>TTT	p.F125F	MSLN_uc002cjt.1_Silent_p.F125F|MSLN_uc002cju.1_Silent_p.F125F|MSLN_uc010brd.1_Silent_p.F124F|MSLN_uc002cjv.1_Silent_p.F125F|MSLN_uc002cjx.1_Silent_p.F125F|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	125					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				TGCTGCTATTCCTCAAGTAGG	0.692													24	71					0	0	0.003330	0	0
CACNA1H	8912	broad.mit.edu	37	16	1250394	1250394	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:1250394C>T	uc002cks.2	+	7	1190	c.942C>T	c.(940-942)CCC>CCT	p.P314P	CACNA1H_uc002ckt.2_Silent_p.P314P	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	314	Extracellular (Potential).|I.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGCGCATGCCCTGCACCCTGG	0.677													4	5					0	0	0.000602	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1815106	1815106	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:1815106C>T	uc002cmk.2	+	20	2490	c.2370C>T	c.(2368-2370)GCC>GCT	p.A790A	MAPK8IP3_uc002cml.2_Silent_p.A784A|MAPK8IP3_uc010uvl.1_Silent_p.A791A	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	790					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						TCATCGACGCCAACCAGCCGG	0.632													12	27					0	0	0.000978	0	0
TBL3	10607	broad.mit.edu	37	16	2025811	2025811	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:2025811C>T	uc002cnu.1	+	11	1092	c.990C>T	c.(988-990)TTC>TTT	p.F330F	TBL3_uc002cnv.1_Silent_p.F216F|TBL3_uc010bsb.1_Silent_p.F119F|TBL3_uc010bsc.1_Silent_p.F216F|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	330					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						CCCCGCAGTTCGCTGGCTACA	0.612													34	76					0	0	0.006999	0	0
NOXO1	124056	broad.mit.edu	37	16	2029903	2029903	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:2029903G>A	uc002cnx.2	-	6	607	c.603C>T	c.(601-603)GGC>GGT	p.G201G	NOXO1_uc002cnz.2_Silent_p.G195G|NOXO1_uc002coa.2_Silent_p.G200G|NOXO1_uc002cny.2_Silent_p.G196G	NM_172168	NP_751908	Q8NFA2	NOXO1_HUMAN	NADPH oxidase organizer 1 isoform c	201	SH3 1.				cell communication|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst	NADPH oxidase complex	enzyme binding|phosphatidylinositol binding|superoxide-generating NADPH oxidase activator activity				0						CCAGCCACCAGCCTGTGCGCA	0.687													6	1					0	0	0.001984	0	0
ZNF598	90850	broad.mit.edu	37	16	2049689	2049689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:2049689G>A	uc002cof.1	-	11	1876	c.1861C>T	c.(1861-1863)CCT>TCT	p.P621S	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	621	Pro-rich.					intracellular	zinc ion binding			lung(1)|breast(1)	2						CTGCTGGCAGGAGCTTCCGGG	0.677													6	21					0	0	0.003080	0	0
AMDHD2	51005	broad.mit.edu	37	16	2577965	2577965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:2577965C>T	uc002cqq.2	+	5	704	c.607C>T	c.(607-609)CGT>TGT	p.R203C	AMDHD2_uc002cqp.2_Missense_Mutation_p.R203C|AMDHD2_uc010uwc.1_Missense_Mutation_p.R203C|AMDHD2_uc010uwd.1_5'UTR	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	203					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						GCTGACGGCCCGTGGCATCTG	0.687													5	9					0	0	0.000602	0	0
IL32	9235	broad.mit.edu	37	16	3119012	3119012	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3119012A>T	uc002cto.2	+	6	572	c.361A>T	c.(361-363)AAA>TAA	p.K121*	IL32_uc002ctk.2_Nonsense_Mutation_p.K75*|IL32_uc010uwp.1_Nonsense_Mutation_p.K55*|IL32_uc010btb.2_Nonsense_Mutation_p.K65*|IL32_uc002ctl.2_Nonsense_Mutation_p.K75*|IL32_uc002ctm.2_Nonsense_Mutation_p.K75*|IL32_uc002ctn.2_Nonsense_Mutation_p.K75*|IL32_uc002cts.3_Nonsense_Mutation_p.K75*|IL32_uc002ctp.2_Nonsense_Mutation_p.K55*|IL32_uc002ctq.2_Nonsense_Mutation_p.K121*|IL32_uc002ctr.2_Nonsense_Mutation_p.K55*|IL32_uc002ctt.2_Nonsense_Mutation_p.K75*|IL32_uc010uwr.1_Nonsense_Mutation_p.K35*|IL32_uc002ctu.2_Nonsense_Mutation_p.K66*	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	121					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						TCTACTTGAAAAAGAAAGAGA	0.587													6	15					0	0	0.001855	0	0
ZNF213	7760	broad.mit.edu	37	16	3190720	3190720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3190720C>T	uc010uws.1	+	6	1199	c.752C>T	c.(751-753)TCC>TTC	p.S251F	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Missense_Mutation_p.S251F|ZNF213_uc010uwt.1_3'UTR	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	251	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGTGAGAAGTCCCTGCTGCAG	0.627													37	34					0	0	0.002222	0	0
ZNF200	7752	broad.mit.edu	37	16	3274538	3274538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3274538G>A	uc002cuj.2	-	5	1174	c.542C>T	c.(541-543)TCT>TTT	p.S181F	ZNF200_uc002cum.3_Missense_Mutation_p.S180F|ZNF200_uc010bti.2_Missense_Mutation_p.S180F|ZNF200_uc002cuk.2_Missense_Mutation_p.S181F|ZNF200_uc002cui.2_Missense_Mutation_p.S180F|ZNF200_uc002cul.3_Missense_Mutation_p.S180F	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	181					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						ATCATCTGAAGACTTTTCTCT	0.393													16	38					0	0	0.004007	0	0
MEFV	4210	broad.mit.edu	37	16	3293550	3293550	+	Missense_Mutation	SNP	G	A	A	rs104895107		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3293550G>A	uc002cun.1	-	10	1977	c.1937C>T	c.(1936-1938)CCG>CTG	p.P646L		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	646	B30.2/SPRY.		P -> L (in arFMF).		inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GAGGAAACTCGGAGAGCCCAG	0.522													40	115					0	0	0.006999	0	0
ZNF75A	7627	broad.mit.edu	37	16	3367324	3367324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3367324C>T	uc002cut.3	+	6	872	c.346C>T	c.(346-348)CAT>TAT	p.H116Y	ZNF75A_uc002cuv.3_RNA	NM_153028	NP_694573	Q96N20	ZN75A_HUMAN	zinc finger protein 75a	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						CAAAGAAAATCATTTTGATAT	0.398													17	29					0	0	0.004007	0	0
ZNF597	146434	broad.mit.edu	37	16	3487251	3487251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3487251C>T	uc002cvd.2	-	4	632	c.448G>A	c.(448-450)GAA>AAA	p.E150K		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	150					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTGGCTCCTTCCCAGGGAGAA	0.383													17	81					0	0	0.002299	0	0
BTBD12	84464	broad.mit.edu	37	16	3639858	3639858	+	Missense_Mutation	SNP	G	A	A	rs141860134		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:3639858G>A	uc002cvp.2	-	12	4408	c.3781C>T	c.(3781-3783)CCG>TCG	p.P1261S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1261	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTGGCCAGCGGGGTGGCGGGC	0.677								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				12	35					0	0	0.002450	0	0
ADCY9	115	broad.mit.edu	37	16	4027629	4027629	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:4027629G>A	uc002cvx.2	-	9	3221	c.2682C>T	c.(2680-2682)TTC>TTT	p.F894F		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	894	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGAACACTGGGAACTGCAAGA	0.607													10	13					0	0	0.000978	0	0
SRL	6345	broad.mit.edu	37	16	4242450	4242450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:4242450C>T	uc002cvz.3	-	6	1139	c.1126G>A	c.(1126-1128)GAT>AAT	p.D376N	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	835						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						TAGAATTTATCGGGATCTTCC	0.478													19	50					0	0	0.006122	0	0
SEPT12	124404	broad.mit.edu	37	16	4833664	4833664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:4833664C>T	uc002cxq.2	-	6	757	c.616G>A	c.(616-618)GCC>ACC	p.A206T	SEPT12_uc002cxr.2_Missense_Mutation_p.A160T|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	206					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						CGCCTGAAGGCCTCTCGCTCC	0.677													22	29					0	0	0.003954	0	0
C16orf89	146556	broad.mit.edu	37	16	5110325	5110325	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:5110325C>T	uc010bud.2	-	3	673	c.585G>A	c.(583-585)GAG>GAA	p.E195E	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Silent_p.E195E	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	157						extracellular region				ovary(1)|skin(1)	2						CGTCACTTCTCTCCTCTGAGA	0.602													15	22					0	0	0.006122	0	0
A2BP1	54715	broad.mit.edu	37	16	7759066	7759066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:7759066G>A	uc002cys.2	+	15	1992	c.1004G>A	c.(1003-1005)CGA>CAA	p.R335Q	A2BP1_uc002cyt.2_Missense_Mutation_p.R308Q|A2BP1_uc010uxz.1_Missense_Mutation_p.R378Q|A2BP1_uc010uya.1_Missense_Mutation_p.E310K|A2BP1_uc010uyb.1_Missense_Mutation_p.R335Q|A2BP1_uc002cyw.2_Missense_Mutation_p.E374K|A2BP1_uc002cyy.2_Missense_Mutation_p.R356Q|A2BP1_uc002cyx.2_Missense_Mutation_p.R356Q|A2BP1_uc010uyc.1_Missense_Mutation_p.R329Q	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	335					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGTTACGGACGAGTTTATGCT	0.453													32	40					0	0	0.003271	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858517	9858517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:9858517C>T	uc002czo.3	-	13	3432	c.2884G>A	c.(2884-2886)GAA>AAA	p.E962K	GRIN2A_uc010uym.1_Missense_Mutation_p.E962K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E805K|GRIN2A_uc002czr.3_Missense_Mutation_p.E962K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	962	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.E962K(1)		skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTTTGGAGTTCGTTCATGTTG	0.438													50	50					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858742	9858742	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:9858742G>A	uc002czo.3	-	13	3207	c.2659C>T	c.(2659-2661)CTG>TTG	p.L887L	GRIN2A_uc010uym.1_Silent_p.L887L|GRIN2A_uc010uyn.1_Silent_p.L730L|GRIN2A_uc002czr.3_Silent_p.L887L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	887	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GATCCCGTCAGATTGAAGTCT	0.473													32	103					0	0	0.002096	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923456	9923456	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:9923456G>A	uc002czo.3	-	9	2379	c.1831C>T	c.(1831-1833)CTG>TTG	p.L611L	GRIN2A_uc010uym.1_Silent_p.L611L|GRIN2A_uc010uyn.1_Silent_p.L454L|GRIN2A_uc002czr.3_Silent_p.L611L	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	611	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGAACACCAGGCCCCAAAGA	0.458													16	56					0	0	0.006122	0	0
GRIN2A	2903	broad.mit.edu	37	16	9927982	9927982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:9927982C>T	uc002czo.3	-	8	2305	c.1757G>A	c.(1756-1758)AGA>AAA	p.R586K	GRIN2A_uc010uym.1_Missense_Mutation_p.R586K|GRIN2A_uc010uyn.1_Missense_Mutation_p.R429K|GRIN2A_uc002czr.3_Missense_Mutation_p.R586K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	586	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGCTAAGTTTCTGTTGTATCC	0.388													72	71					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032313	10032313	+	Silent	SNP	G	A	A	rs113636131		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:10032313G>A	uc002czo.3	-	3	1058	c.510C>T	c.(508-510)TTC>TTT	p.F170F	GRIN2A_uc010uym.1_Silent_p.F170F|GRIN2A_uc010uyn.1_Silent_p.F13F|GRIN2A_uc002czr.3_Silent_p.F170F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	170	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCACCAGGGAGAAGACATGCC	0.527													13	47					0	0	0.001855	0	0
CLEC16A	23274	broad.mit.edu	37	16	11272495	11272495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:11272495C>T	uc002dao.2	+	24	3340	c.3110C>T	c.(3109-3111)CCC>CTC	p.P1037L	CLEC16A_uc002dap.2_Missense_Mutation_p.P124L	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	1037										ovary(1)|central_nervous_system(1)	2						TGCACAGAGCCCGTGGGCGAA	0.692													4	8					0	0	0.000248	0	0
RUNDC2A	84127	broad.mit.edu	37	16	12136845	12136845	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:12136845C>T	uc002dbw.1	+	5	401	c.339C>T	c.(337-339)GGC>GGT	p.G113G		NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	113	RUN.									ovary(1)	1						CAGACGTGGGCCGGGGTCGCG	0.652			T	CIITA	PMBL|Hodgkin Lymphona|								10	21					0	0	0.000978	0	0
ERCC4	2072	broad.mit.edu	37	16	14042072	14042072	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:14042072C>T	uc002dce.2	+	11	2628	c.2619C>T	c.(2617-2619)ATC>ATT	p.I873I	ERCC4_uc010uyz.1_Silent_p.I423I	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	873	Interaction with EME1 and ERCC1.				double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						TTAAGAACATCGCAGAATTAG	0.458			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				21	32					0	0	0.003954	0	0
MKL2	57496	broad.mit.edu	37	16	14345755	14345755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:14345755C>T	uc010uza.1	+	14	2595	c.2440C>T	c.(2440-2442)CCA>TCA	p.P814S	MKL2_uc002dcg.2_Missense_Mutation_p.P764S|MKL2_uc002dcj.2_Missense_Mutation_p.P59S	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	803					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						TACAGTTCTTCCATATCAGAG	0.398													57	48					0	0	0.003610	0	0
PARN	5073	broad.mit.edu	37	16	14698029	14698029	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:14698029C>G	uc010uzd.1	-	11	899	c.757G>C	c.(757-759)GAG>CAG	p.E253Q	PARN_uc010uzc.1_Missense_Mutation_p.E192Q|PARN_uc010uze.1_Missense_Mutation_p.E207Q|PARN_uc010uzf.1_Missense_Mutation_p.E78Q|PARN_uc010uzg.1_RNA	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	253					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						TTCTGCTGCTCTCTTCTTTTG	0.323													3	18					0	0	0.000602	0	0
NOMO1	23420	broad.mit.edu	37	16	14947412	14947412	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:14947412A>C	uc002dcv.2	+	8	890	c.824A>C	c.(823-825)GAA>GCA	p.E275A		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	275	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						GTCTCCAGAGAAGATGGCTCG	0.517													107	122					0	0	0.003610	0	0
NOMO1	23420	broad.mit.edu	37	16	14947435	14947435	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:14947435T>A	uc002dcv.2	+	8	913	c.847T>A	c.(847-849)TCC>ACC	p.S283T		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor	283	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						CTCTTTCTATTCCTTGCCAAG	0.493													158	151					0	0	0.003610	0	0
C16orf45	89927	broad.mit.edu	37	16	15661910	15661910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:15661910C>T	uc002ddo.2	+	3	487	c.301C>T	c.(301-303)CCA>TCA	p.P101S	C16orf45_uc002ddp.2_Missense_Mutation_p.P84S	NM_033201	NP_149978	Q96MC5	CP045_HUMAN	hypothetical protein LOC89927 isoform 1	101										ovary(1)	1						GGTCGCCATCCCAGGTAACCA	0.557													8	20					0	0	0.006214	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18597196	18597196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:18597196C>T	uc002dfg.2	+	7	760	c.560C>T	c.(559-561)TCC>TTC	p.S187F	ABCC6P1_uc010vam.1_Missense_Mutation_p.S130F	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						AGAGAAAACTCCTCAGAAGAA	0.557													33	21					0	0	0.001951	0	0
SMG1	23049	broad.mit.edu	37	16	18844455	18844455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:18844455G>A	uc002dfm.2	-	51	8962	c.8599C>T	c.(8599-8601)CCA>TCA	p.P2867S	SMG1_uc010bwb.2_Missense_Mutation_p.P2727S|SMG1_uc010bwa.2_Missense_Mutation_p.P1598S	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2867					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AGTGCTTCTGGAAATATGATT	0.368													14	23					0	0	0.003163	0	0
TMC7	79905	broad.mit.edu	37	16	19049269	19049269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:19049269C>T	uc002dfq.2	+	8	1209	c.1079C>T	c.(1078-1080)TCT>TTT	p.S360F	TMC7_uc010vao.1_Silent_p.L354L|TMC7_uc002dfp.2_Missense_Mutation_p.S360F|TMC7_uc010vap.1_Missense_Mutation_p.S250F	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	360	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						CGCATTTACTCTTTGAGACTG	0.393													18	60					0	0	0.001216	0	0
TMC7	79905	broad.mit.edu	37	16	19056754	19056754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:19056754C>T	uc002dfq.2	+	11	1677	c.1547C>T	c.(1546-1548)CCT>CTT	p.P516L	TMC7_uc002dfp.2_Missense_Mutation_p.P516L|TMC7_uc010vap.1_Missense_Mutation_p.P406L	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	516	Extracellular (Potential).					integral to membrane				skin(2)|ovary(1)	3						GTGGATTTTCCTAGAAAGTAA	0.413													17	45					0	0	0.006122	0	0
TMC5	79838	broad.mit.edu	37	16	19455470	19455470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:19455470C>T	uc002dgc.3	+	4	1605	c.856C>T	c.(856-858)CTT>TTT	p.L286F	TMC5_uc010vaq.1_Missense_Mutation_p.L286F|TMC5_uc002dgb.3_Missense_Mutation_p.L286F|TMC5_uc010var.1_Missense_Mutation_p.L286F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	286	Extracellular (Potential).					integral to membrane				skin(1)	1						CGTGGGCAGTCTTTGGGGAGA	0.498													46	47					0	0	0.003610	0	0
CP110	9738	broad.mit.edu	37	16	19554064	19554064	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:19554064C>T	uc002dgl.3	+	7	2596	c.2349C>T	c.(2347-2349)GCC>GCT	p.A783A	CP110_uc002dgk.3_Silent_p.A783A			O43303	CP110_HUMAN	RecName: Full=Centrosomal protein of 110 kDa;          Short=Cep110;	783	Calmodulin-binding.				centriole replication|G2/M transition of mitotic cell cycle|regulation of cytokinesis	centriole|cytosol	protein binding				0						TTGGAAGAGCCAAAACTAGAT	0.368													10	22					0	0	0.000978	0	0
C16orf88	400506	broad.mit.edu	37	16	19718265	19718265	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:19718265C>T	uc002dgq.2	-	5	1359	c.1344G>A	c.(1342-1344)AGG>AGA	p.R448R		NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	448	Interaction with ZFP106 (By similarity).					nucleolus					0						TGGAAGCGTTCCTGTCAATGT	0.473													54	172					0	0	0.003610	0	0
PDILT	204474	broad.mit.edu	37	16	20384349	20384349	+	Silent	SNP	G	A	A	rs145263436		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:20384349G>A	uc002dhc.1	-	6	1000	c.777C>T	c.(775-777)ATC>ATT	p.I259I		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	259					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TGTTGTATTCGATCACAAAAT	0.443													47	45					0	0	0.003610	0	0
ACSM1	116285	broad.mit.edu	37	16	20696537	20696537	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:20696537C>T	uc002dhm.1	-	2	449	c.381G>A	c.(379-381)GTG>GTA	p.V127V	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.V127V	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	127					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						AGCCCACAGCCACCAGCCACC	0.577													10	47					0	0	0.000673	0	0
DNAH3	55567	broad.mit.edu	37	16	20959854	20959854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:20959854G>A	uc010vbe.1	-	57	11294	c.11294C>T	c.(11293-11295)TCC>TTC	p.S3765F	DNAH3_uc010vbd.1_Missense_Mutation_p.S1200F	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3765					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGGAGCGAGGGAGTAATAGTC	0.537													4	34					0	0	0.000602	0	0
DNAH3	55567	broad.mit.edu	37	16	20959876	20959876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:20959876C>T	uc010vbe.1	-	57	11272	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K	DNAH3_uc010vbd.1_Missense_Mutation_p.E1193K	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3758					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCCTCAATTTCCTTACAGTAG	0.532													22	34					0	0	0.002780	0	0
DNAH3	55567	broad.mit.edu	37	16	20975658	20975658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:20975658G>A	uc010vbe.1	-	53	9548	c.9548C>T	c.(9547-9549)CCA>CTA	p.P3183L	DNAH3_uc010vbd.1_Missense_Mutation_p.P618L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3183	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGCAACTTCTGGGAGGTAATG	0.478													36	35					0	0	0.003755	0	0
IGSF6	10261	broad.mit.edu	37	16	21658603	21658603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:21658603C>T	uc002djg.1	-	2	331	c.278G>A	c.(277-279)AGG>AAG	p.R93K	uc002diq.3_Intron|METTL9_uc002dje.2_Intron|METTL9_uc002djf.2_Intron|IGSF6_uc010vbi.1_Missense_Mutation_p.R93K	NM_005849	NP_005840	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6 precursor	93	Extracellular (Potential).|Ig-like C2-type.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0				GBM - Glioblastoma multiforme(48;0.066)		GAGGGCCTCCCTCACTGTGAA	0.502													15	53					0	0	0.004007	0	0
OTOA	146183	broad.mit.edu	37	16	21698938	21698938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:21698938C>T	uc002djh.2	+	7	605	c.604C>T	c.(604-606)CGG>TGG	p.R202W	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.R123W	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	202					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GCGGCTCCCTCGGGACCTGCG	0.453													15	10					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	16	21854892	21854892	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:21854892G>A	uc002djr.3	-	6	542	c.360C>T	c.(358-360)TCC>TCT	p.S120S	uc002djs.3_RNA|uc002djq.3_Silent_p.S101S|uc010vbn.1_Silent_p.S120S	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		GCATACAAATGGACCTCAGCC	0.428													23	139					0	0	0.002780	0	0
SCNN1G	6340	broad.mit.edu	37	16	23208611	23208611	+	Missense_Mutation	SNP	G	A	A	rs147199706		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:23208611G>A	uc002dlm.1	+	6	1079	c.940G>A	c.(940-942)GAA>AAA	p.E314K		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	314	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	GTACATAAACGAAGAGGAATA	0.493													13	37					0	0	0.002450	0	0
ERN2	10595	broad.mit.edu	37	16	23706640	23706640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:23706640C>T	uc002dma.3	-	15	1994	c.1825G>A	c.(1825-1827)GAA>AAA	p.E609K	ERN2_uc010bxp.2_Missense_Mutation_p.E557K	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	561	Protein kinase.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		AGTTGAACTTCCCGCCGAACC	0.642													4	6					0	0	0.000602	0	0
PRKCB	5579	broad.mit.edu	37	16	24231384	24231384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:24231384G>A	uc002dmd.2	+	17	2163	c.1966G>A	c.(1966-1968)GAA>AAA	p.E656K	PRKCB_uc002dme.2_3'UTR	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	656	AGC-kinase C-terminal.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GGACCAAAATGAATTTGCTGG	0.448													36	25					0	0	0.006230	0	0
SLC5A11	115584	broad.mit.edu	37	16	24881266	24881266	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:24881266C>T	uc002dmu.2	+	4	484	c.252C>T	c.(250-252)TTC>TTT	p.F84F	SLC5A11_uc002dms.2_Silent_p.F20F|SLC5A11_uc010vcd.1_Silent_p.F84F|SLC5A11_uc002dmt.2_Silent_p.F20F|SLC5A11_uc010vce.1_Intron|SLC5A11_uc010bxt.2_Silent_p.F20F	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	84	Helical; (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		GTGGACATTTCATTGGCCTGG	0.488													22	39					0	0	0.004656	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147162	26147163	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:26147162_26147163GG>AA	uc002dof.2	+	2	1356_1357	c.964_965GG>AA	c.(964-966)GGG>AAG	p.G322K		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	322	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		CCGGACCCTCGGGCTGATCGAT	0.545													96	74					0	0	0.004672	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147239	26147239	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:26147239C>T	uc002dof.2	+	2	1433	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	347	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		TCCAGTATTTCCCCCTCTCCC	0.537													36	84					0	0	0.004878	0	0
GTF3C1	2975	broad.mit.edu	37	16	27473718	27473718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:27473718G>A	uc002dov.1	-	36	6054	c.6014C>T	c.(6013-6015)GCC>GTC	p.A2005V	GTF3C1_uc002dou.2_Missense_Mutation_p.A1980V	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	2005						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GTACAGCATGGCCTCCATCAT	0.632													11	5					0	0	0.000673	0	0
KIAA0556	23247	broad.mit.edu	37	16	27689173	27689173	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:27689173C>T	uc002dow.2	+	7	688	c.664C>T	c.(664-666)CTG>TTG	p.L222L	KIAA0556_uc002dox.1_Silent_p.L130L	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	222										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GGACCCGGCACTGGTGGGCCA	0.522													16	52					0	0	0.006122	0	0
XPO6	23214	broad.mit.edu	37	16	28181102	28181102	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:28181102G>A	uc002dpa.1	-	5	1035	c.534C>T	c.(532-534)GAC>GAT	p.D178D	XPO6_uc002dpb.1_Silent_p.D164D|XPO6_uc010vcp.1_Silent_p.D178D	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	178					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCTGCACCTGGTCCAGTAGCA	0.577													33	34					0	0	0.003271	0	0
CLN3	1201	broad.mit.edu	37	16	28498850	28498850	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:28498850G>A	uc002dpo.2	-	6	710	c.387C>T	c.(385-387)CTC>CTT	p.L129L	uc010vct.1_Intron|CLN3_uc002dpl.2_Silent_p.L51L|CLN3_uc010vcu.1_Silent_p.L29L|CLN3_uc002dpn.2_Missense_Mutation_p.R103C|CLN3_uc002dpm.2_Silent_p.L75L|CLN3_uc010vcv.1_Silent_p.L105L|CLN3_uc010byd.2_Silent_p.L129L|CLN3_uc002dpp.2_Silent_p.L129L|CLN3_uc002dpt.1_Silent_p.L29L|CLN3_uc002dpq.1_Silent_p.L129L|CLN3_uc010bye.1_Silent_p.L129L|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Missense_Mutation_p.R75C|CLN3_uc002dpu.1_Silent_p.L75L|CLN3_uc002dpw.1_Missense_Mutation_p.R49C|CLN3_uc010vcw.1_Silent_p.L75L|CLN3_uc002dqa.2_Silent_p.L180L|CLN3_uc010vcx.1_Silent_p.L29L|CLN3_uc002dpx.1_Missense_Mutation_p.R79C|CLN3_uc002dpy.1_Missense_Mutation_p.R46C|CLN3_uc002dpz.1_RNA	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	129	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						TCCCACTGACGAGAACCCGGG	0.587													11	34					0	0	0.000978	0	0
SULT1A1	6817	broad.mit.edu	37	16	28619681	28619681	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:28619681G>A	uc002dqi.2	-	3	776	c.303C>T	c.(301-303)GCC>GCT	p.A101A	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Silent_p.A101A|SULT1A1_uc002dqk.2_Silent_p.A101A|SULT1A1_uc002dql.2_Silent_p.A101A|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Silent_p.A192A|SULT1A1_uc002dqo.2_Silent_p.A101A|SULT1A1_uc002dqp.2_Silent_p.A101A	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	101					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GGAGTCGTGGGGCCGGTGTGT	0.527													33	76					0	0	0.004878	0	0
SPNS1	83985	broad.mit.edu	37	16	28993231	28993231	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:28993231C>T	uc010vdi.1	+	8	959	c.819C>T	c.(817-819)TTC>TTT	p.F273F	uc010vct.1_Intron|SPNS1_uc002drx.2_Silent_p.F200F|SPNS1_uc002dsa.2_Silent_p.F273F|SPNS1_uc002drz.2_Intron|SPNS1_uc010byp.2_Intron|SPNS1_uc010byq.1_Silent_p.F205F|LAT_uc010vdj.1_5'Flank	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	273					lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						GTCCTAGTTTCGTCCTGTCTT	0.597											OREG0023712	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	25					0	0	0.007835	0	0
ASPHD1	253982	broad.mit.edu	37	16	29913068	29913068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:29913068G>A	uc002dut.2	+	1	922	c.776G>A	c.(775-777)CGG>CAG	p.R259Q	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	259	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						CAAGCAGGCCGGTGCCAACCC	0.667													7	20					0	0	0.001984	0	0
TAOK2	9344	broad.mit.edu	37	16	29994970	29994971	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:29994970_29994971CC>AT	uc002dva.1	+	13	2190_2191	c.1407_1408CC>AT	c.(1405-1410)ATCCGA>ATATGA	p.R470*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Nonsense_Mutation_p.R470*|TAOK2_uc002dvc.1_Nonsense_Mutation_p.R470*|TAOK2_uc010bzm.1_Nonsense_Mutation_p.R477*|TAOK2_uc002dvd.1_Nonsense_Mutation_p.R297*	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	470					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TTGCCACCATCCGAACCGCCTC	0.589													58	156					0	0	0.004672	0	0
TAOK2	9344	broad.mit.edu	37	16	29999291	29999291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:29999291C>T	uc002dva.1	+	16	4481	c.3698C>T	c.(3697-3699)CCC>CTC	p.P1233L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.P1240L|TAOK2_uc002dvd.1_Missense_Mutation_p.P1060L	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1233					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GCCCTGCCCCCCTGGAGGTAG	0.652													7	6					0	0	0.004482	0	0
GDPD3	79153	broad.mit.edu	37	16	30122787	30122787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:30122787G>A	uc002dwp.2	-	7	708	c.629C>T	c.(628-630)TCC>TTC	p.S210F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|GDPD3_uc002dwq.2_Missense_Mutation_p.S148F|LOC100271831_uc010vei.1_5'Flank	NM_024307	NP_077283	Q7L5L3	GDPD3_HUMAN	glycerophosphodiester phosphodiesterase domain	210	Helical; (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0						CAGGTAGTAGGAAAGCAGCAC	0.567													22	93					0	0	0.003954	0	0
ITGAL	3683	broad.mit.edu	37	16	30522201	30522201	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:30522201G>A	uc002dyi.3	+	23	2796	c.2620_splice	c.e23-1	p.V874_splice	ITGAL_uc002dyj.3_Splice_Site_p.V790_splice|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor						blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TTTCCTGCCAGGTTGCTCTGC	0.527													31	22					0	0	0.004878	0	0
ZNF764	92595	broad.mit.edu	37	16	30569482	30569482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:30569482G>A	uc002dyq.2	-	1	103	c.22C>T	c.(22-24)CTC>TTC	p.L8F	ZNF764_uc002dyr.1_Missense_Mutation_p.L8F	NM_033410	NP_219363	Q96H86	ZN764_HUMAN	zinc finger protein 764	8					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CGGGGAGGGAGCGGGGCCAGA	0.726													13	11					0	0	0.004990	0	0
FBRS	64319	broad.mit.edu	37	16	30680858	30680858	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:30680858C>T	uc002dzd.3	+	12	1538	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L	FBRS_uc002dzc.3_Silent_p.L337L	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	425										ovary(1)	1			Colorectal(24;0.103)			CTCACCTTCTCAGCAAGACCC	0.706													97	96					0	0	0.003610	0	0
FUS	2521	broad.mit.edu	37	16	31201371	31201371	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31201371C>T	uc002ebf.2	+	11	1160	c.1077C>T	c.(1075-1077)TTC>TTT	p.F359F	FUS_uc002ebh.2_Silent_p.F358F|FUS_uc002ebg.2_Silent_p.F154F|FUS_uc002ebi.2_Silent_p.F360F|FUS_uc002ebj.2_Silent_p.F155F|FUS_uc010caj.1_Silent_p.F50F	NM_004960	NP_004951	P35637	FUS_HUMAN	fusion (involved in t(12;16) in malignant	359	RRM.				cell death|nuclear mRNA splicing, via spliceosome	nucleoplasm	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		FUS/DDIT3(623)|FUS/ERG(163)|FUS/CREB3L2(158)|FUS/CREB3L1(6)|FUS/ATF1(4)|FUS/FEV(2)	soft_tissue(791)|haematopoietic_and_lymphoid_tissue(153)|bone(12)|breast(2)	958		Renal(780;0.000219)|Breast(268;0.00957)|Hepatocellular(780;0.121)		GBM - Glioblastoma multiforme(240;2.31e-05)|Kidney(780;0.000209)		GTAAAGAATTCTCCGGAAATC	0.458			T	DDIT3|ERG|FEV|ATF1|CREB3L2|CREB3L1	liposarcoma|AML|Ewing sarcoma|angiomatoid fibrous histiocytoma|fibromyxoid sarcoma								3	8					0	0	0.004672	0	0
ITGAM	3684	broad.mit.edu	37	16	31308886	31308887	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31308886_31308887GG>AT	uc002ebq.2	+	13	1506_1507	c.1408_1409GG>AT	c.(1408-1410)GGC>ATC	p.G470I	ITGAM_uc002ebr.2_Missense_Mutation_p.G470I|ITGAM_uc010cam.1_Missense_Mutation_p.R73H|ITGAM_uc010can.2_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	470	FG-GAP 5.|Extracellular (Potential).|Potential.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						GGACAGCAACGGCAGCACCGAC	0.634													47	109					0	0	0.004672	0	0
ITGAX	3687	broad.mit.edu	37	16	31373212	31373212	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31373212C>T	uc002ebu.1	+	10	1135	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	ITGAX_uc002ebt.2_Silent_p.F356F|ITGAX_uc010vfk.1_Silent_p.F6F	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	356	FG-GAP 3.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGAGGGCTTCAGCGCTGTGT	0.627													27	69					0	0	0.006320	0	0
ITGAX	3687	broad.mit.edu	37	16	31382989	31382989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31382989G>A	uc002ebu.1	+	17	2111	c.2044G>A	c.(2044-2046)GAC>AAC	p.D682N	ITGAX_uc002ebt.2_Missense_Mutation_p.D682N	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	682	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCTGGCCCTCGACCCTGGCCG	0.607													15	45					0	0	0.001216	0	0
ITGAD	3681	broad.mit.edu	37	16	31435806	31435806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31435806G>A	uc002ebv.1	+	29	3329	c.3280G>A	c.(3280-3282)GAA>AAA	p.E1094K	ITGAD_uc010cap.1_Missense_Mutation_p.E1095K	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	1094	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGTGCTAGAAGAAGACGAGGT	0.542													10	39					0	0	0.000673	0	0
SLC5A2	6524	broad.mit.edu	37	16	31499425	31499425	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31499425G>T	uc002ecf.3	+	8	971	c.952G>T	c.(952-954)GGG>TGG	p.G318W	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	318	Helical; (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						CATCCTGTGTGGGTACCTGAA	0.632													6	122					8.12818e-05	0.00011719	0.001984	1	0
AHSP	51327	broad.mit.edu	37	16	31539877	31539877	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31539877G>A	uc002ecj.2	+	3	259	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	58					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						AGGTGACAGGGGAGCCCCAAG	0.532													37	22					0	0	0.005524	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163393	32163393	+	RNA	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:32163393A>G	uc002ecx.2	-	2		c.378T>C				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						GTGTAAAGCCAATTTCCCTTA	0.458													5	21					0	0	0.001168	0	0
LONP2	83752	broad.mit.edu	37	16	48381495	48381495	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:48381495G>A	uc002efi.1	+	13	2105	c.2016G>A	c.(2014-2016)GTG>GTA	p.V672V	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Silent_p.V628V	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	672					misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						TCATGTTCGTGGAGGCGAGTC	0.547													31	16					0	0	0.003755	0	0
NOD2	64127	broad.mit.edu	37	16	50753905	50753905	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:50753905C>T	uc002egm.1	+	7	2805	c.2700C>T	c.(2698-2700)TCC>TCT	p.S900S	NOD2_uc010cbl.1_Silent_p.S650S|NOD2_uc010cbm.1_Intron|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_Intron|NOD2_uc010cbp.1_Intron|NOD2_uc010cbq.1_Silent_p.S38S|NOD2_uc010cbr.1_RNA|NOD2_uc010vgq.1_5'UTR	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	900	LRR 5.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				GCAACACCTCCTTGCAGTTCC	0.587													17	18					0	0	0.007413	0	0
SALL1	6299	broad.mit.edu	37	16	51175758	51175758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:51175758C>T	uc010vgs.1	-	2	406	c.375G>A	c.(373-375)ATG>ATA	p.M125I	SALL1_uc010vgr.1_Missense_Mutation_p.M28I|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	125					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCTCCACCTCCATGGACTCTT	0.453													14	11					0	0	0.003163	0	0
CDH8	1006	broad.mit.edu	37	16	61855009	61855009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:61855009G>A	uc002eog.1	-	6	1096	c.844C>T	c.(844-846)CAC>TAC	p.H282Y	CDH8_uc002eoh.2_Missense_Mutation_p.H51Y	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	282	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		ACTGAGAAGTGATACAGGCCT	0.318													15	16					0	0	0.004007	0	0
CDH11	1009	broad.mit.edu	37	16	64984673	64984673	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:64984673G>A	uc002eoi.2	-	12	2325	c.1891C>T	c.(1891-1893)CTG>TTG	p.L631L	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Silent_p.L631L|CDH11_uc010vin.1_Silent_p.L505L	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	631	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CCCTTACCCAGGAGAATGACG	0.612			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			15	6					0	0	0.002450	0	0
CDH11	1009	broad.mit.edu	37	16	65006808	65006808	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:65006808G>A	uc002eoi.2	-	9	1823	c.1389C>T	c.(1387-1389)ATC>ATT	p.I463I	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.I463I|CDH11_uc010vin.1_Silent_p.I337I	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	463	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		AATACTTACGGATTTCTGCTG	0.358			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			17	33					0	0	0.006122	0	0
CMTM1	113540	broad.mit.edu	37	16	66603928	66603928	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:66603928C>T	uc002epi.3	+	2	294	c.171C>T	c.(169-171)GTC>GTT	p.V57V	CMTM1_uc002epb.3_RNA|CMTM1_uc002epc.3_RNA|CMTM1_uc002epd.3_Intron|CMTM1_uc002epe.3_Intron|CMTM1_uc002epf.3_Intron|CMTM1_uc002epg.3_Intron|CMTM1_uc002eph.3_Silent_p.V57V|CMTM1_uc002epl.3_Intron|CMTM1_uc002epj.3_Intron|CMTM1_uc002epk.3_Intron|CMTM1_uc002epa.3_Intron|CMTM1_uc002epn.3_Silent_p.V174V|CMTM1_uc002epo.3_RNA|CMTM1_uc002epp.3_RNA|CMTM1_uc002epq.3_RNA|CMTM1_uc010cds.2_RNA|CMTM1_uc002epr.3_Silent_p.V174V|CMTM1_uc002epm.3_RNA|CMTM1_uc002eps.2_RNA	NM_181269	NP_851786	Q8IZ96	CKLF1_HUMAN	chemokine-like factor superfamily 1 isoform 1	57	MARVEL.|Helical; (Potential).				chemotaxis	extracellular space|integral to membrane	cytokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0702)|Epithelial(162;0.222)		TCTGCATTGTCGTTTTTTTTA	0.343													47	105					0	0	0.003214	0	0
CMTM2	146225	broad.mit.edu	37	16	66620900	66620900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:66620900G>A	uc002ept.2	+	3	605	c.445G>A	c.(445-447)GAC>AAC	p.D149N	CMTM2_uc010cdu.2_Missense_Mutation_p.D96N	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	149	MARVEL.|Helical; (Potential).				chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		CCACCTTCAGGACCTCTTCAA	0.512													16	47					0	0	0.007413	0	0
RRAD	6236	broad.mit.edu	37	16	66957429	66957429	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:66957429G>A	uc002eqn.2	-	4	791	c.639C>T	c.(637-639)GTC>GTT	p.V213V	RRAD_uc002eqo.2_Silent_p.V213V	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	213					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		CATCCACCGAGACCTCACGAG	0.632													16	44					0	0	0.004007	0	0
CES8	283848	broad.mit.edu	37	16	67029684	67029684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:67029684C>T	uc002eqv.2	+	2	255	c.212C>T	c.(211-213)CCC>CTC	p.P71L	CES8_uc010vix.1_Missense_Mutation_p.P71L|CES8_uc002eqw.2_Missense_Mutation_p.P31L	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	71						extracellular region	carboxylesterase activity				0						CCTCCAGAACCCCCGGAGCCC	0.567													46	33					0	0	0.003610	0	0
CTCF	10664	broad.mit.edu	37	16	67670719	67670719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:67670719C>T	uc002etl.2	+	11	2254	c.1964C>T	c.(1963-1965)CCC>CTC	p.P655L	CTCF_uc010cek.2_Missense_Mutation_p.P327L|CTCF_uc002etm.1_Missense_Mutation_p.P144L	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	655					chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		AGAGGACGACCCCCTGGCAGA	0.602													39	123					0	0	0.003610	0	0
RLTPR	146206	broad.mit.edu	37	16	67682024	67682024	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:67682024C>T	uc002etn.2	+	14	1261	c.1141C>T	c.(1141-1143)CTG>TTG	p.L381L	RLTPR_uc010cel.1_Silent_p.L381L|RLTPR_uc010vjr.1_Silent_p.L381L	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	381										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		CGACACTGCCCTGGACACTGT	0.672													4	19					0	0	0.000602	0	0
CENPT	80152	broad.mit.edu	37	16	67866145	67866145	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:67866145T>C	uc002eun.3	-	6	824	c.275A>G	c.(274-276)AAC>AGC	p.N92S	CENPT_uc002eum.3_Missense_Mutation_p.N92S|CENPT_uc010vkc.1_5'UTR|CENPT_uc010vkd.1_5'UTR|CENPT_uc010vke.1_Intron	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	92					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		TAGTAGGATGTTCTTCAGCAG	0.537													41	23					0	0	0.003610	0	0
DPEP3	64180	broad.mit.edu	37	16	68014011	68014011	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:68014011G>A	uc002evc.3	-	1	442	c.348C>T	c.(346-348)TTC>TTT	p.F116F	DPEP3_uc010cex.2_Silent_p.F116F	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	91					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		CCACGAGTGGGAAACTCCGCA	0.607													11	38					0	0	0.000673	0	0
DPEP2	64174	broad.mit.edu	37	16	68025810	68025810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:68025810G>A	uc010cey.2	-	4	757	c.593C>T	c.(592-594)TCC>TTC	p.S198F	DPEP2_uc002evd.3_Missense_Mutation_p.S198F|DPEP2_uc002eve.2_Missense_Mutation_p.S198F|DPEP2_uc002evf.2_RNA|DPEP2_uc002evg.2_3'UTR	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	198					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		AGGTAAGATGGAGAGGCTATT	0.572													23	41					0	0	0.003330	0	0
PRMT7	54496	broad.mit.edu	37	16	68386189	68386189	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:68386189C>T	uc002evy.1	+	15	1728	c.1452C>T	c.(1450-1452)AGC>AGT	p.S484S	PRMT7_uc002evx.1_Silent_p.S410S|PRMT7_uc010vlg.1_Silent_p.S434S|PRMT7_uc002evz.1_Silent_p.S256S|PRMT7_uc010cfd.1_5'UTR	NM_019023	NP_061896	Q9NVM4	ANM7_HUMAN	protein arginine methyltransferase 7	484					cell differentiation|DNA methylation involved in gamete generation|regulation of gene expression by genetic imprinting|regulation of transcription, DNA-dependent|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	[myelin basic protein]-arginine N-methyltransferase activity|histone methyltransferase activity (H4-R3 specific)|protein-arginine omega-N monomethyltransferase activity|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0155)|Epithelial(162;0.0629)		TCACTACCAGCCTGCTGCCGT	0.637													15	44					0	0	0.007413	0	0
SMPD3	55512	broad.mit.edu	37	16	68404844	68404844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:68404844G>A	uc002ewa.2	-	3	1663	c.1241C>T	c.(1240-1242)CCC>CTC	p.P414L	SMPD3_uc010cfe.2_Missense_Mutation_p.P414L|SMPD3_uc010vlh.1_Missense_Mutation_p.P414L	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	414	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GTCCATGATGGGGTAGCGGCT	0.577													9	16					0	0	0.004482	0	0
TERF2	7014	broad.mit.edu	37	16	69404472	69404472	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:69404472G>A	uc002exd.2	-	5	753	c.628C>T	c.(628-630)CAG>TAG	p.Q210*	TERF2_uc002exe.2_Nonsense_Mutation_p.Q210*	NM_005652	NP_005643	Q15554	TERF2_HUMAN	telomeric repeat binding factor 2	210	TRFH dimerization.				age-dependent telomere shortening|cell cycle|cellular senescence|negative regulation of telomere maintenance via semi-conservative replication|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of transcription, DNA-dependent|telomeric loop formation	Golgi apparatus|nuclear telomere cap complex|nucleoplasm	double-stranded telomeric DNA binding|protein C-terminus binding|protein homodimerization activity			lung(1)	1		Ovarian(137;0.101)				GAAAAGTTCTGGATAACAGGA	0.488													18	40					0	0	0.002299	0	0
NFAT5	10725	broad.mit.edu	37	16	69727437	69727437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:69727437C>T	uc002exm.1	+	12	4863	c.3655C>T	c.(3655-3657)CCA>TCA	p.P1219S	NFAT5_uc002exi.2_Missense_Mutation_p.P1143S|NFAT5_uc002exj.1_Missense_Mutation_p.P1143S|NFAT5_uc002exk.1_Missense_Mutation_p.P1143S|NFAT5_uc002exl.1_Missense_Mutation_p.P1237S|NFAT5_uc002exn.1_Missense_Mutation_p.P1236S|NFAT5_uc002exo.1_RNA	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1219					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGCTCCCTTCCACCTAATCC	0.498													17	65					0	0	0.001523	0	0
WWP2	11060	broad.mit.edu	37	16	69965483	69965483	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:69965483G>A	uc002exu.1	+	16	1682	c.1593G>A	c.(1591-1593)CAG>CAA	p.Q531Q	WWP2_uc002exv.1_Silent_p.Q531Q|WWP2_uc010vlm.1_Silent_p.Q415Q|WWP2_uc010vln.1_Silent_p.Q149Q|WWP2_uc002exw.1_Silent_p.Q92Q|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	531					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						CCTTCCAACAGGTTAGATCAT	0.502													21	58					0	0	0.006320	0	0
ST3GAL2	6483	broad.mit.edu	37	16	70422341	70422341	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:70422341G>A	uc002eyw.2	-	3	2750	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ST3GAL2_uc002eyx.2_Silent_p.F214F	NM_006927	NP_008858	Q16842	SIA4B_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	214	Lumenal (Potential).				amino sugar metabolic process	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity			ovary(1)	1		Ovarian(137;0.0694)				GCACCAGCACGAAGCTGACGT	0.592													76	73					0	0	0.003610	0	0
HYDIN	54768	broad.mit.edu	37	16	70889126	70889126	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:70889126G>A	uc002ezr.2	-	73	12473	c.12345C>T	c.(12343-12345)TTC>TTT	p.F4115F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4116										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGAAAAATCGAACCCCTGCT	0.542													50	57					0	0	0.003610	0	0
HYDIN	54768	broad.mit.edu	37	16	70993685	70993685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:70993685C>T	uc002ezr.2	-	39	6132	c.6004G>A	c.(6004-6006)GAA>AAA	p.E2002K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2003										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCTCCAACTTCCTCCATGGAG	0.502													8	25					0	0	0.004990	0	0
HYDIN	54768	broad.mit.edu	37	16	71101260	71101260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:71101260C>T	uc002ezr.2	-	15	2136	c.2008G>A	c.(2008-2010)GAG>AAG	p.E670K	HYDIN_uc010cfz.1_Missense_Mutation_p.E415K|HYDIN_uc002ezv.2_Missense_Mutation_p.E670K|HYDIN_uc010vmc.1_Missense_Mutation_p.E687K|HYDIN_uc010vmd.1_Missense_Mutation_p.E697K|HYDIN_uc002ezw.3_Missense_Mutation_p.E687K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	670										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGTGCCAGCTCGTATTTCTGC	0.527													34	22					0	0	0.005524	0	0
FTSJD1	55783	broad.mit.edu	37	16	71319424	71319424	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:71319424G>A	uc010cga.2	-	3	806	c.400C>T	c.(400-402)CAG>TAG	p.Q134*	FTSJD1_uc002ezy.3_Nonsense_Mutation_p.Q134*|FTSJD1_uc002ezz.3_Nonsense_Mutation_p.Q134*	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	134						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						TTTCCATTCTGAAAAGCTTCC	0.393													17	35					0	0	0.004007	0	0
ZNF19	7567	broad.mit.edu	37	16	71509131	71509131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:71509131G>A	uc010cgc.1	-	6	1825	c.1319C>T	c.(1318-1320)CCT>CTT	p.P440L	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Missense_Mutation_p.P428L|ZNF19_uc002fal.1_Missense_Mutation_p.P428L|ZNF19_uc002fam.1_Missense_Mutation_p.P440L	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	440						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		gtccagcacaGGCTTCTCTCC	0.249													3	22					0	0	0.000248	0	0
PHLPP2	23035	broad.mit.edu	37	16	71715751	71715751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:71715751G>A	uc002fax.2	-	5	799	c.793C>T	c.(793-795)CCT>TCT	p.P265S	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Missense_Mutation_p.P265S|PHLPP2_uc002fay.1_Missense_Mutation_p.P265S	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	265	LRR 1.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						AGATGCTCAGGAACCTCCTCG	0.473													47	34					0	0	0.003610	0	0
PMFBP1	83449	broad.mit.edu	37	16	72163016	72163016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:72163016C>T	uc002fcc.3	-	13	2086	c.1914G>A	c.(1912-1914)ATG>ATA	p.M638I	PMFBP1_uc002fcd.2_Missense_Mutation_p.M633I|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.M488I|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	638	Potential.									ovary(2)	2		Ovarian(137;0.179)				GTTCTCCCTCCATCAGCTTCT	0.493													100	235					0	0	0.003610	0	0
CLEC18B	497190	broad.mit.edu	37	16	74455097	74455097	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:74455097G>A	uc002fct.2	-	1	272	c.72C>T	c.(70-72)ACC>ACT	p.T24T	CLEC18B_uc002fcu.2_Silent_p.T24T|CLEC18B_uc010vmu.1_Silent_p.T24T|CLEC18B_uc010vmw.1_Silent_p.T24T	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B	24						extracellular region	sugar binding				0						CCTCTGCCCAGGTGGTGCCAA	0.667													24	92					0	0	0.003954	0	0
MLKL	197259	broad.mit.edu	37	16	74719433	74719433	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:74719433G>A	uc002fdb.2	-	5	1212	c.771C>T	c.(769-771)TTC>TTT	p.F257F	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	257	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						TGGGAGATTCGAATTTCTTCA	0.333													11	27					0	0	0.002450	0	0
BCAR1	9564	broad.mit.edu	37	16	75268959	75268959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:75268959G>A	uc002fdv.2	-	5	1961	c.1838C>T	c.(1837-1839)CCG>CTG	p.P613L	BCAR1_uc002fdt.2_Missense_Mutation_p.P66L|BCAR1_uc002fdu.2_Missense_Mutation_p.P403L|BCAR1_uc010cgu.2_Missense_Mutation_p.P602L|BCAR1_uc010vna.1_Missense_Mutation_p.P611L|BCAR1_uc010vnb.1_Missense_Mutation_p.P659L|BCAR1_uc002fdw.2_Missense_Mutation_p.P613L|BCAR1_uc010vnc.1_Missense_Mutation_p.P465L|BCAR1_uc010vnd.1_Missense_Mutation_p.P631L|BCAR1_uc002fdx.2_Missense_Mutation_p.P631L	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	613	Ser-rich.				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		CTCAGGCCCCGGGGCAGTGGC	0.677													11	40					0	0	0.000673	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76572047	76572047	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:76572047G>A	uc002feu.1	+	21	3415	c.3030G>A	c.(3028-3030)GTG>GTA	p.V1010V	CNTNAP4_uc002fev.1_Silent_p.V874V|CNTNAP4_uc010chb.1_Silent_p.V937V|CNTNAP4_uc002fex.1_Silent_p.V1013V	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1010	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCTCATCCGTGATATACAATT	0.284													4	13					0	0	0.000248	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77398091	77398091	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:77398091C>T	uc002ffc.3	-	5	1385	c.966G>A	c.(964-966)ATG>ATA	p.M322I	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_Missense_Mutation_p.M18I|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	322	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TTACCATGTTCATTACTGTGA	0.433													51	66					0	0	0.003610	0	0
VAT1L	57687	broad.mit.edu	37	16	77910348	77910348	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:77910348C>T	uc002ffg.1	+	5	901	c.804C>T	c.(802-804)CCC>CCT	p.P268P		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	268							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						TTCTCAAACCCCTGGGAACCT	0.473													23	77					0	0	0.004656	0	0
CMIP	80790	broad.mit.edu	37	16	81725423	81725423	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:81725423C>T	uc002fgp.2	+	11	1504	c.1432C>T	c.(1432-1434)CAA>TAA	p.Q478*	CMIP_uc002fgq.1_Nonsense_Mutation_p.Q384*|CMIP_uc010vnq.1_Nonsense_Mutation_p.Q291*|CMIP_uc002fgr.1_Nonsense_Mutation_p.Q325*|CMIP_uc010vnr.1_5'Flank	NM_198390	NP_938204	Q8IY22	CMIP_HUMAN	c-Maf-inducing protein isoform C-mip	444						cytoplasm|nucleus					0						CAGTTTGCTTCAACCCATTCC	0.542													7	26					0	0	0.003080	0	0
LRRC50	123872	broad.mit.edu	37	16	84211377	84211377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84211377G>A	uc002fhl.3	+	12	2289	c.2108G>A	c.(2107-2109)GGA>GAA	p.G703E	LRRC50_uc010vnw.1_Missense_Mutation_p.G467E	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	703					axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						ACGTGTGTCGGAGTTGCCCAG	0.572									Kartagener_syndrome				30	65					0	0	0.002836	0	0
TAF1C	9013	broad.mit.edu	37	16	84215990	84215990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84215990G>A	uc002fhn.2	-	7	767	c.539C>T	c.(538-540)CCC>CTC	p.P180L	TAF1C_uc002fhm.2_Missense_Mutation_p.P113L|TAF1C_uc010vnx.1_Missense_Mutation_p.P180L|TAF1C_uc010vny.1_5'UTR|TAF1C_uc010vnz.1_5'UTR|TAF1C_uc002fho.2_5'UTR|TAF1C_uc010voa.1_5'UTR|TAF1C_uc002fhp.1_RNA|TAF1C_uc010vob.1_Missense_Mutation_p.P180L	NM_005679	NP_005670	Q15572	TAF1C_HUMAN	TBP-associated factor 1C isoform 1	180					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding			ovary(1)	1						GCCCAGGATGGGGCCCCCGAG	0.657													3	5					0	0	0.004672	0	0
KCNG4	93107	broad.mit.edu	37	16	84270818	84270818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84270818G>A	uc010voc.1	-	2	395	c.274C>T	c.(274-276)CGG>TGG	p.R92W	KCNG4_uc002fhu.1_Missense_Mutation_p.R92W	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	92	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TCGTAGCTCCGACAGAGCCTG	0.612													16	49					0	0	0.004990	0	0
KCNG4	93107	broad.mit.edu	37	16	84270909	84270909	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84270909G>A	uc010voc.1	-	2	304	c.183C>T	c.(181-183)ATC>ATT	p.I61I	KCNG4_uc002fhu.1_Silent_p.I61I	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	61	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						CGTTGATCAGGATCTCCTTCT	0.642													22	18					0	0	0.002299	0	0
ATP2C2	9914	broad.mit.edu	37	16	84444353	84444353	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84444353T>C	uc002fhx.2	+	6	586	c.497T>C	c.(496-498)GTT>GCT	p.V166A	ATP2C2_uc010chj.2_Missense_Mutation_p.V166A|ATP2C2_uc002fhy.2_Missense_Mutation_p.V183A|ATP2C2_uc002fhz.2_Intron	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	166	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ACCAAGATGGTTCCTCCAGAA	0.507													14	38					0	0	0.006122	0	0
ATP2C2	9914	broad.mit.edu	37	16	84488527	84488527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:84488527G>A	uc002fhx.2	+	21	2173	c.2084G>A	c.(2083-2085)GGG>GAG	p.G695E	ATP2C2_uc010chj.2_Missense_Mutation_p.G695E|ATP2C2_uc002fhy.2_Missense_Mutation_p.G712E|ATP2C2_uc002fhz.2_Missense_Mutation_p.G544E	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	695	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GGGCAGACAGGGACGGACGTC	0.562													12	46					0	0	0.001855	0	0
GINS2	51659	broad.mit.edu	37	16	85721087	85721087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:85721087G>A	uc002fja.2	-	2	268	c.184C>T	c.(184-186)CCT>TCT	p.P62S	GINS2_uc002fjb.2_Missense_Mutation_p.P62S	NM_016095	NP_057179	Q9Y248	PSF2_HUMAN	DNA replication complex GINS protein PSF2	62					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	nucleoplasm	protein binding				0						CACTCTGGAGGGAGCAGGCGA	0.597													17	63					0	0	0.001523	0	0
CBFA2T3	863	broad.mit.edu	37	16	88958295	88958295	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:88958295G>A	uc002fmm.1	-	5	892	c.706C>T	c.(706-708)CTG>TTG	p.L236L	CBFA2T3_uc002fml.1_Silent_p.L150L|CBFA2T3_uc010cif.1_Silent_p.L175L|CBFA2T3_uc002fmn.1_Silent_p.L211L	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	236	TAFH.|Mediates localization to the nucleus (By similarity).|Mediates interaction with PDE7A (in isoform 2).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		ATTACCTTCAGGAAGGGAATG	0.587			T	RUNX1	AML								5	22					0	0	0.001168	0	0
ANKRD11	29123	broad.mit.edu	37	16	89346472	89346472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:89346472G>A	uc002fmx.1	-	9	6939	c.6478C>T	c.(6478-6480)CTT>TTT	p.L2160F	ANKRD11_uc002fmy.1_Missense_Mutation_p.L2160F|ANKRD11_uc002fnc.1_Missense_Mutation_p.L2160F|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Missense_Mutation_p.L2117F	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2160	Pro-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GGAGGAGCAAGACTTTCTTCC	0.637													8	27					0	0	0.004482	0	0
SPG7	6687	broad.mit.edu	37	16	89619491	89619491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:89619491G>A	uc002fnj.2	+	14	1905	c.1884G>A	c.(1882-1884)ATG>ATA	p.M628I	SPG7_uc002fnk.1_RNA|SPG7_uc002fnl.2_Missense_Mutation_p.M37I	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	628	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GGATGTGCATGGCCCTGGGAG	0.622													10	13					0	0	0.000978	0	0
CPNE7	27132	broad.mit.edu	37	16	89661997	89661997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:89661997C>T	uc002fnp.2	+	16	1880	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W	CPNE7_uc002fnq.2_Missense_Mutation_p.R509W	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	584					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		CGTGCCCTTCCGGGAGCTCAA	0.667													16	34					0	0	0.004007	0	0
RPH3AL	9501	broad.mit.edu	37	17	63695	63695	+	Missense_Mutation	SNP	C	T	T	rs142240545		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:63695C>T	uc002frd.1	-	8	940	c.896G>A	c.(895-897)CGA>CAA	p.R299Q	RPH3AL_uc010vpy.1_Silent_p.T249T|RPH3AL_uc002fre.1_Missense_Mutation_p.R299Q|RPH3AL_uc002frf.1_Missense_Mutation_p.R270Q|RPH3AL_uc010cjl.1_Missense_Mutation_p.R270Q	NM_006987	NP_008918	Q9UNE2	RPH3L_HUMAN	rabphilin 3A-like (without C2 domains)	299					exocytosis|intracellular protein transport	transport vesicle membrane	cytoskeletal protein binding|Rab GTPase binding|zinc ion binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.023)|all cancers(1;4.96e-06)|Epithelial(1;2.86e-05)|BRCA - Breast invasive adenocarcinoma(1;0.00453)|OV - Ovarian serous cystadenocarcinoma(1;0.0716)|LUAD - Lung adenocarcinoma(1115;0.102)|COAD - Colon adenocarcinoma(4;0.107)		AGCGGGGGCTCGTCCAGGTGT	0.622													8	22					0	0	0.003080	0	0
GLOD4	51031	broad.mit.edu	37	17	663430	663430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:663430G>A	uc002frv.2	-	10	1001	c.925C>T	c.(925-927)CCC>TCC	p.P309S	GLOD4_uc002frt.2_Missense_Mutation_p.P238S|GLOD4_uc002fru.2_Missense_Mutation_p.P294S|GLOD4_uc010vqc.1_Missense_Mutation_p.P285S	NM_016080	NP_057164	Q9HC38	GLOD4_HUMAN	glyoxalase domain containing 4	309						mitochondrion					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		GAAGCTTTGGGTTTATTGTGT	0.443													9	48					0	0	0.000978	0	0
OR1D2	4991	broad.mit.edu	37	17	2995520	2995520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:2995520C>T	uc010vrb.1	-	1	771	c.771G>A	c.(769-771)ATG>ATA	p.M257I		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	257	Helical; Name=6; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TTAGGTATACCATACAAAGTG	0.488													14	54					0	0	0.003163	0	0
ITGAE	3682	broad.mit.edu	37	17	3661105	3661105	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:3661105C>T	uc002fwo.3	-	9	1014	c.915G>A	c.(913-915)AAG>AAA	p.K305K		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	305	VWFA.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CCACCATGACCTTGGATGCCT	0.532													41	88					0	0	0.003214	0	0
ZZEF1	23140	broad.mit.edu	37	17	3924426	3924426	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:3924426G>A	uc002fxe.2	-	45	7465	c.7401C>T	c.(7399-7401)TTC>TTT	p.F2467F		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2467							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AACACACCAAGAAACATATTC	0.542													36	102					0	0	0.002222	0	0
CAMTA2	23125	broad.mit.edu	37	17	4883402	4883402	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:4883402G>A	uc002gah.1	-	9	1323	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A	CAMTA2_uc010cku.1_Silent_p.A428A|CAMTA2_uc002gag.1_Silent_p.A404A|CAMTA2_uc002gai.1_Silent_p.A407A|CAMTA2_uc010ckv.1_Silent_p.A52A|CAMTA2_uc010vsu.1_Silent_p.A218A	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	405					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						GGGTATGAGCGGCCTCTGCCT	0.642													28	31					0	0	0.007291	0	0
USP6	9098	broad.mit.edu	37	17	5076112	5076112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:5076112G>A	uc002gau.1	+	38	6290	c.4060G>A	c.(4060-4062)GAT>AAT	p.D1354N	USP6_uc002gav.1_Missense_Mutation_p.D1354N|USP6_uc010ckz.1_Missense_Mutation_p.D1037N	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1354					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						ACTTCACCCTGATGAAATTGA	0.428			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								24	93					0	0	0.005443	0	0
ZNF594	84622	broad.mit.edu	37	17	5085852	5085852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:5085852G>A	uc010cla.1	-	2	1856	c.1700C>T	c.(1699-1701)GCT>GTT	p.A567V		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	567					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						ACACCAATAAGCTTTCGCTTC	0.458													75	52					0	0	0.003610	0	0
ZNF594	84622	broad.mit.edu	37	17	5086309	5086309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:5086309G>A	uc010cla.1	-	2	1399	c.1243C>T	c.(1243-1245)CAG>TAG	p.Q415*		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	415	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TCTGAGCTCTGATTGAAAGTT	0.413													26	128					0	0	0.005443	0	0
NUP88	4927	broad.mit.edu	37	17	5312176	5312176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:5312176G>A	uc002gbo.1	-	5	760	c.734C>T	c.(733-735)CCA>CTA	p.P245L	NUP88_uc010vsx.1_Missense_Mutation_p.P245L|NUP88_uc010cle.1_Missense_Mutation_p.P244L|NUP88_uc010vsy.1_Missense_Mutation_p.P245L	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa	245					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						TGCTGCCAATGGCCCAAAGTC	0.398													29	23					0	0	0.002445	0	0
CLEC10A	10462	broad.mit.edu	37	17	6978411	6978411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:6978411C>T	uc002gek.2	-	9	1216	c.913G>A	c.(913-915)GAG>AAG	p.E305K	CLEC10A_uc002gej.2_Missense_Mutation_p.E281K|CLEC10A_uc002gel.2_Missense_Mutation_p.E278K|CLEC10A_uc010clv.1_3'UTR	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	305	C-type lectin.|Extracellular (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						AGGCCAGCCTCGCAGACCCAG	0.647													17	62					0	0	0.006122	0	0
CLEC10A	10462	broad.mit.edu	37	17	6980215	6980215	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:6980215G>A	uc002gek.2	-	4	579	c.276C>T	c.(274-276)TCC>TCT	p.S92S	CLEC10A_uc002gej.2_Silent_p.S92S|CLEC10A_uc002gel.2_Silent_p.S92S|CLEC10A_uc010clv.1_Silent_p.S92S	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	92	Extracellular (Potential).|Potential.				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						ACTCACCCTGGGAAGTCAGTG	0.562													39	53					0	0	0.001951	0	0
DLG4	1742	broad.mit.edu	37	17	7107049	7107049	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7107049G>A	uc002get.3	-	7	1627	c.426C>T	c.(424-426)ATC>ATT	p.I142I	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Silent_p.I39I|DLG4_uc010cly.2_Silent_p.I96I|DLG4_uc010vto.1_Silent_p.I139I|DLG4_uc002geu.2_Silent_p.I96I	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	99	PDZ 1.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						CACCAGGAATGATCTTGGTGA	0.617													16	51					0	0	0.007413	0	0
NEURL4	84461	broad.mit.edu	37	17	7230825	7230825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7230825G>A	uc002gga.1	-	2	668	c.661C>T	c.(661-663)CCC>TCC	p.P221S	NEURL4_uc002ggb.1_Missense_Mutation_p.P221S|NEURL4_uc002ggc.1_5'Flank	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	221							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCTCGAGGGGAGGTGTGGGG	0.627													13	44					0	0	0.001855	0	0
ACAP1	9744	broad.mit.edu	37	17	7247255	7247255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7247255C>T	uc002ggd.2	+	8	855	c.649C>T	c.(649-651)CGA>TGA	p.R217*		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	217	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						GTCCCAGTATCGAAAGGAGCT	0.652													7	3					0	0	0.001984	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365321	7365321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7365321G>A	uc002ghc.3	-	4	3230	c.2980C>T	c.(2980-2982)CCC>TCC	p.P994S	ZBTB4_uc002ghd.3_Missense_Mutation_p.P994S	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	994					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		CCCTTAGGGGGAATTGGTGGA	0.607													5	67					0	0	0.001168	0	0
POLR2A	5430	broad.mit.edu	37	17	7405248	7405248	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7405248C>T	uc002ghf.3	+	15	2613	c.2379C>T	c.(2377-2379)GTC>GTT	p.V793V		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	793					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				AGCAGAACGTCGAGGGCAAGC	0.512													30	25					0	0	0.004289	0	0
WRAP53	55135	broad.mit.edu	37	17	7604071	7604071	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7604071C>T	uc010vuh.1	+	5	810	c.655C>T	c.(655-657)CGA>TGA	p.R219*	WRAP53_uc010vui.1_Nonsense_Mutation_p.R219*|WRAP53_uc002gip.2_Nonsense_Mutation_p.R219*|WRAP53_uc002gir.2_Nonsense_Mutation_p.R219*|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Nonsense_Mutation_p.R186*|WRAP53_uc010vuj.1_5'UTR	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	219					positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						CCCTGTCCTTCGAATGGTGGA	0.532													30	101					0	0	0.002836	0	0
DNAH2	146754	broad.mit.edu	37	17	7644283	7644283	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7644283C>T	uc002giu.1	+	10	1676	c.1662C>T	c.(1660-1662)CTC>CTT	p.L554L	DNAH2_uc002git.2_Silent_p.L636L|DNAH2_uc010vuk.1_Silent_p.L554L	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	554	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGCACATCCTCCGGCGTCGCA	0.612													40	33					0	0	0.007835	0	0
DNAH2	146754	broad.mit.edu	37	17	7682739	7682739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7682739C>T	uc002giu.1	+	35	5734	c.5720C>T	c.(5719-5721)CCT>CTT	p.P1907L		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1907	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				ACCATGAATCCTGGTAGGTGG	0.537													12	17					0	0	0.001855	0	0
DNAH2	146754	broad.mit.edu	37	17	7701533	7701533	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7701533C>T	uc002giu.1	+	53	8303	c.8289C>T	c.(8287-8289)ATC>ATT	p.I2763I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2763	ATP (Potential).|AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGGTGGGTATCGGGGGCAGCG	0.607													19	57					0	0	0.001216	0	0
CHD3	1107	broad.mit.edu	37	17	7798840	7798840	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7798840T>C	uc002gje.2	+	10	1837	c.1687T>C	c.(1687-1689)TCC>CCC	p.S563P	CHD3_uc002gjd.2_Missense_Mutation_p.S622P|CHD3_uc002gjf.2_Missense_Mutation_p.S563P|CHD3_uc002gjg.1_Missense_Mutation_p.S391P	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	563	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CTGGCACTGCTCCTGGGCCAA	0.537													15	69					0	0	0.004007	0	0
CHD3	1107	broad.mit.edu	37	17	7806292	7806292	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7806292C>T	uc002gje.2	+	22	3558	c.3408C>T	c.(3406-3408)ACC>ACT	p.T1136T	CHD3_uc002gjd.2_Silent_p.T1195T|CHD3_uc002gjf.2_Silent_p.T1136T|CHD3_uc002gjh.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1136	Helicase C-terminal.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				TCCTGTCCACCCGAGCTGGGG	0.547													13	48					0	0	0.001855	0	0
KCNAB3	9196	broad.mit.edu	37	17	7827787	7827787	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7827787G>A	uc002gjm.1	-	9	657	c.657C>T	c.(655-657)AAC>AAT	p.N219N	KCNAB3_uc010vul.1_RNA	NM_004732	NP_004723	O43448	KCAB3_HUMAN	potassium voltage-gated channel, shaker-related	219						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(1)	1		Prostate(122;0.157)				CCAGGCCCTGGTTGATGACAT	0.557													11	37					0	0	0.001368	0	0
GUCY2D	3000	broad.mit.edu	37	17	7909860	7909860	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:7909860C>T	uc002gjt.2	+	4	1280	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	402	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				AGCCCCCATTCGTGCTGCTAG	0.667													8	32					0	0	0.003080	0	0
PIK3R5	23533	broad.mit.edu	37	17	8808219	8808219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:8808219G>A	uc002glt.2	-	5	354	c.287C>T	c.(286-288)CCA>CTA	p.P96L	PIK3R5_uc010vuz.1_Missense_Mutation_p.P96L|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.P96L|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	96	Heterodimerization (By similarity).				platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						CGAGTCTGGTGGGAAGTGTGG	0.547													37	32					0	0	0.002222	0	0
USP43	124739	broad.mit.edu	37	17	9631925	9631925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:9631925C>T	uc010cod.2	+	15	2990	c.2990C>T	c.(2989-2991)ACC>ATC	p.T997I	USP43_uc002gma.3_Missense_Mutation_p.T686I|USP43_uc010vva.1_Missense_Mutation_p.T992I|USP43_uc010coe.2_Missense_Mutation_p.T794I|USP43_uc002gmc.3_Missense_Mutation_p.T509I	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	997					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGGACACTCACCCTTCTGAGG	0.597													9	26					0	0	0.004482	0	0
DHRS7C	201140	broad.mit.edu	37	17	9674859	9674859	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:9674859G>A	uc010vvb.1	-	6	885	c.885C>T	c.(883-885)TTC>TTT	p.F295F	DHRS7C_uc010cof.2_Silent_p.F294F	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	295						extracellular region	binding|oxidoreductase activity				0						CCACCACGGCGAAAAAGAACT	0.577													11	5					0	0	0.001855	0	0
GLP2R	9340	broad.mit.edu	37	17	9765355	9765355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:9765355G>A	uc002gmd.1	+	9	1004	c.1004G>A	c.(1003-1005)GGG>GAG	p.G335E		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	335	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	ACAACAAATGGGAATAAGAAA	0.473													78	58					0	0	0.003610	0	0
MYH13	8735	broad.mit.edu	37	17	10247364	10247364	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10247364G>A	uc002gmk.1	-	16	1737	c.1647C>T	c.(1645-1647)TCC>TCT	p.S549S	MYH13_uc010vvf.1_Silent_p.S224S	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	549	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TGTTCTTGAAGGAGGTGTCTG	0.498													61	45					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10299737	10299737	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10299737C>T	uc002gmm.2	-	33	4658	c.4563G>A	c.(4561-4563)GAG>GAA	p.E1521E	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1521	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCTTTCCTCCCTCTGCAATCT	0.428									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				20	9					0	0	0.001882	0	0
MYH8	4626	broad.mit.edu	37	17	10304883	10304883	+	Missense_Mutation	SNP	C	T	T	rs1140933		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10304883C>T	uc002gmm.2	-	23	3003	c.2908G>A	c.(2908-2910)GAG>AAG	p.E970K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	970	Potential.			E -> Q (in Ref. 1 and 4).	muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCATGTTTCTCCTTCTCAACC	0.408									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				121	83					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10305102	10305102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10305102C>T	uc002gmm.2	-	23	2784	c.2689G>A	c.(2689-2691)GAA>AAA	p.E897K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	897	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTATCTGCTTCCTATGGAGAG	0.358									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				88	49					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10323373	10323373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10323373C>T	uc002gmm.2	-	3	267	c.172G>A	c.(172-174)GAA>AAA	p.E58K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	58	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTCCCTCCTTCTTTGCTTTGT	0.438									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				88	217					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10354126	10354127	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10354126_10354127CT>TA	uc002gmn.2	-	29	4062_4063	c.3951_3952AG>TA	c.(3949-3954)GAAGAA>GATAAA	p.1317_1318EE>DK	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1317_1318	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTCTTTAATTCTTCAATCTGTT	0.406													25	60					0	0	0.004672	0	0
MYH4	4622	broad.mit.edu	37	17	10363547	10363547	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10363547G>A	uc002gmn.2	-	13	1350	c.1239C>T	c.(1237-1239)TTC>TTT	p.F413F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	413	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTTGGTTACGAACTCATTGC	0.433													31	48					0	0	0.002836	0	0
MYH4	4622	broad.mit.edu	37	17	10364338	10364338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10364338C>T	uc002gmn.2	-	12	1153	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	348	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCCACCTTTTCATCAGCAGTG	0.488													25	65					0	0	0.006320	0	0
MYH1	4619	broad.mit.edu	37	17	10398382	10398382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10398382C>T	uc002gmo.2	-	37	5426	c.5332G>A	c.(5332-5334)GAC>AAC	p.D1778N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1778	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCGCTGGTGTCCTGTTCCTTC	0.507													29	136					0	0	0.003271	0	0
MYH1	4619	broad.mit.edu	37	17	10400511	10400511	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10400511C>T	uc002gmo.2	-	33	4626	c.4532_splice	c.e33-1	p.Q1511_splice	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult							muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GAAATCTCCTCTGTTGGTGAA	0.328													7	28					0	0	0.003080	0	0
MYH1	4619	broad.mit.edu	37	17	10411710	10411710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10411710G>A	uc002gmo.2	-	16	1961	c.1867C>T	c.(1867-1869)CTC>TTC	p.L623F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	623	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCAACAAAGAGGAGAGCCAGA	0.408													47	36					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10415456	10415456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10415456C>T	uc002gmo.2	-	13	1295	c.1201G>A	c.(1201-1203)GCC>ACC	p.A401T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	401	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TAGCAGAGGGCTTTGAGCAGA	0.473													56	129					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10415820	10415820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10415820G>A	uc002gmo.2	-	12	1146	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	351	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTATAGATGGACACTCTTTC	0.438													17	65					0	0	0.004990	0	0
MYH1	4619	broad.mit.edu	37	17	10416027	10416027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10416027C>T	uc002gmo.2	-	11	1073	c.979G>A	c.(979-981)GAT>AAT	p.D327N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	327	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCTTGGTCATCAATGCTGGGC	0.418													26	111					0	0	0.002096	0	0
MYH2	4620	broad.mit.edu	37	17	10435093	10435093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10435093C>T	uc010coi.2	-	22	2682	c.2554G>A	c.(2554-2556)GAG>AAG	p.E852K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E852K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	852	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ATCTCCTTCTCAGTTTCTGCA	0.428													39	45					0	0	0.001951	0	0
MYH3	4621	broad.mit.edu	37	17	10533018	10533018	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:10533018G>A	uc002gmq.1	-	39	5769	c.5692C>T	c.(5692-5694)CGA>TGA	p.R1898*		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1898	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGAGCCTTTCGGAATTTGGTG	0.527													12	35					0	0	0.001368	0	0
DNAH9	1770	broad.mit.edu	37	17	11584062	11584062	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:11584062A>G	uc002gne.2	+	19	3667	c.3599A>G	c.(3598-3600)AAC>AGC	p.N1200S	DNAH9_uc010coo.2_Missense_Mutation_p.N494S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1200	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAATGGAACAACATAAAAAAG	0.532													14	25					0	0	0.004990	0	0
DNAH9	1770	broad.mit.edu	37	17	11597185	11597185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:11597185G>A	uc002gne.2	+	21	4683	c.4615G>A	c.(4615-4617)GAT>AAT	p.D1539N	DNAH9_uc010coo.2_Missense_Mutation_p.D833N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1539	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTATTTGCAGGATTCTAAAAG	0.438													12	52					0	0	0.001368	0	0
DNAH9	1770	broad.mit.edu	37	17	11666756	11666756	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:11666756G>A	uc002gne.2	+	36	7064	c.6996_splice	c.e36-1	p.R2332_splice	DNAH9_uc010coo.2_Splice_Site_p.R1626_splice	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2						cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCTCTTTGCAGGTTTAAGAAG	0.512													25	87					0	0	0.003330	0	0
DNAH9	1770	broad.mit.edu	37	17	11687804	11687804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:11687804G>A	uc002gne.2	+	41	8077	c.8009G>A	c.(8008-8010)GGA>GAA	p.G2670E	DNAH9_uc010coo.2_Missense_Mutation_p.G1964E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2670	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTACCCACAGGAATCAAATTC	0.517													66	56					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11786988	11786988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:11786988C>T	uc002gne.2	+	56	10960	c.10892C>T	c.(10891-10893)TCT>TTT	p.S3631F	DNAH9_uc010coo.2_Missense_Mutation_p.S2925F|DNAH9_uc002gnf.2_5'UTR|DNAH9_uc010vvh.1_5'Flank	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3631	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCCTCCGCCTCTGGGAACTTC	0.483													44	46					0	0	0.002852	0	0
MYOCD	93649	broad.mit.edu	37	17	12655976	12655976	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:12655976G>A	uc002gnn.2	+	10	1670	c.1371G>A	c.(1369-1371)CCG>CCA	p.P457P	MYOCD_uc002gno.2_Silent_p.P457P|MYOCD_uc002gnp.1_Silent_p.P361P|MYOCD_uc002gnq.2_Silent_p.P176P	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	457	Ser-rich.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CCAGCCCCCCGATCTCCCCAG	0.627													13	54					0	0	0.003163	0	0
MYOCD	93649	broad.mit.edu	37	17	12656151	12656151	+	Missense_Mutation	SNP	G	A	A	rs146033223		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:12656151G>A	uc002gnn.2	+	10	1845	c.1546G>A	c.(1546-1548)GAG>AAG	p.E516K	MYOCD_uc002gno.2_Missense_Mutation_p.E516K|MYOCD_uc002gnp.1_Missense_Mutation_p.E420K|MYOCD_uc002gnq.2_Missense_Mutation_p.E235K	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	516	Potential.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GCTGGACTCCGAGAAGGACAA	0.582													14	14					0	0	0.002450	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13400018	13400018	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:13400018G>A	uc002gob.1	-	2	1515	c.717C>T	c.(715-717)ATC>ATT	p.I239I		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	239	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GCACCACCACGATGAGCTTGG	0.637													14	96					0	0	0.001523	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13400099	13400099	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:13400099G>A	uc002gob.1	-	2	1434	c.636C>T	c.(634-636)ACC>ACT	p.T212T		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	212	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TCTTCTCCATGGTGATCTGCC	0.602													7	57					0	0	0.001984	0	0
CDRT15P	94158	broad.mit.edu	37	17	13927893	13927894	+	RNA	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:13927893_13927894CC>TT	uc002god.1	+	1		c.79_80CC>TT				NR_003261				Homo sapiens CMT1A duplicated region transcript 15 pseudogene (CDRT15P), non-coding RNA.												0						GGAGTGAGAGCCTTTTCTGACG	0.564													6	17					0	0	0.004672	0	0
HS3ST3B1	9953	broad.mit.edu	37	17	14248381	14248381	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:14248381C>T	uc002goh.1	+	2	921	c.591C>T	c.(589-591)ACC>ACT	p.T197T		NM_006041	NP_006032	Q9Y662	HS3SB_HUMAN	heparan sulfate D-glucosaminyl	197	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Golgi membrane|integral to plasma membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		GGCAGATCACCATGGAGAAGA	0.612													7	5					0	0	0.004482	0	0
NCOR1	9611	broad.mit.edu	37	17	15968285	15968285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:15968285G>A	uc002gpo.2	-	34	5240	c.5000C>T	c.(4999-5001)CCA>CTA	p.P1667L	NCOR1_uc002gpn.2_Missense_Mutation_p.P1683L|NCOR1_uc002gpm.2_Missense_Mutation_p.P187L|NCOR1_uc010vwb.1_Missense_Mutation_p.P251L|NCOR1_uc010coy.2_Missense_Mutation_p.P575L|NCOR1_uc010vwc.1_Missense_Mutation_p.P477L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1667	Interaction with ETO.|Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGTTCCCCCTGGATGAGGCAC	0.423													12	55					0	0	0.000978	0	0
PIGL	9487	broad.mit.edu	37	17	16221109	16221109	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:16221109C>T	uc002gpv.2	+	6	579	c.547C>T	c.(547-549)CAG>TAG	p.Q183*		NM_004278	NP_004269	Q9Y2B2	PIGL_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	183	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	N-acetylglucosaminylphosphatidylinositol deacetylase activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0934)		GCTCACGCTTCAGTCTGTGAA	0.537													26	55					0	0	0.007291	0	0
RAI1	10743	broad.mit.edu	37	17	17699616	17699616	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:17699616C>T	uc002grm.2	+	3	3823	c.3354C>T	c.(3352-3354)GCC>GCT	p.A1118A	RAI1_uc002grn.1_Silent_p.A1118A	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1118						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		TGCCTGTGGCCTCCGACAGCA	0.672													22	14					0	0	0.001523	0	0
SREBF1	6720	broad.mit.edu	37	17	17721617	17721617	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:17721617G>A	uc002gru.1	-	6	1334	c.1140C>T	c.(1138-1140)CTC>CTT	p.L380L	SREBF1_uc002grp.1_5'UTR|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_Silent_p.L126L|SREBF1_uc002grs.1_Silent_p.L356L|SREBF1_uc002grt.1_Silent_p.L410L|SREBF1_uc010cpp.1_Silent_p.L356L|SREBF1_uc010cpq.1_Silent_p.L380L	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	380	Interaction with LMNA (By similarity).|Cytoplasmic (Potential).|Leucine-zipper.				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						TCTCCTGCTTGAGTTTCTGGT	0.433													35	21					0	0	0.001951	0	0
MYO15A	51168	broad.mit.edu	37	17	18040975	18040975	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:18040975C>T	uc010vxh.1	+	15	5195	c.4857C>T	c.(4855-4857)ATC>ATT	p.I1619I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1619	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TCAACAAGATCGTCTTCCAGG	0.517													8	37					0	0	0.000673	0	0
TOP3A	7156	broad.mit.edu	37	17	18196150	18196150	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:18196150G>A	uc002gsx.1	-	11	1319	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*	TOP3A_uc010cpz.1_5'Flank|TOP3A_uc010vxr.1_Intron|TOP3A_uc002gsw.1_Intron|TOP3A_uc010vxs.1_Nonsense_Mutation_p.R262*	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	364					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						GTTTCTGTTCGGGGATAGCTG	0.468													18	42					0	0	0.007413	0	0
SMCR8	140775	broad.mit.edu	37	17	18220690	18220690	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:18220690C>T	uc002gsy.3	+	1	2097	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I		NM_144775	NP_658988	Q8TEV9	SMCR8_HUMAN	Smith-Magenis syndrome chromosome region,	529										central_nervous_system(1)	1						AGGCCCTCATCCCTGATGACT	0.537													63	49					0	0	0.003610	0	0
FAM18B	51030	broad.mit.edu	37	17	18708852	18708852	+	Splice_Site	SNP	A	G	G	rs2589696		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:18708852A>G	uc002gum.2	+	7	617	c.592_splice	c.e7-2	p.N198_splice	FAM18B_uc002gun.2_Splice_Site_p.N134_splice	NM_016078	NP_057162	Q9NYZ1	F18B1_HUMAN	hypothetical protein LOC51030							integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (53;0.0872)|READ - Rectum adenocarcinoma(1115;0.0967)		TGTCTTTTGCAGAACACTGGA	0.368													3	54					0	0	0.000248	0	0
ALDH3A1	218	broad.mit.edu	37	17	19646600	19646600	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:19646600G>A	uc010cqu.2	-	2	669	c.339C>T	c.(337-339)ACC>ACT	p.T113T	ALDH3A1_uc010vzd.1_Silent_p.T113T|ALDH3A1_uc002gwj.2_Silent_p.T113T|ALDH3A1_uc010cqv.2_Silent_p.T113T|ALDH3A1_uc002gwk.2_Missense_Mutation_p.P30L|ALDH3A1_uc002gwl.1_Silent_p.T40T	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	113					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	GGTAGTTCCAGGTGCCAATGA	0.657													18	20					0	0	0.007413	0	0
ULK2	9706	broad.mit.edu	37	17	19699438	19699438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:19699438G>A	uc002gwm.3	-	19	2476	c.1967C>T	c.(1966-1968)GCC>GTC	p.A656V	ULK2_uc002gwn.2_Missense_Mutation_p.A656V	NM_001142610	NP_001136082	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	656					signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)					CTGCTGCTCGGCCCGCTGCCT	0.458													15	58					0	0	0.007413	0	0
KCNJ12	3768	broad.mit.edu	37	17	21318927	21318927	+	Silent	SNP	C	T	T	rs142326096		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:21318927C>T	uc002gyv.1	+	3	978	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	91	Helical; Name=M1; (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGCTGGCCTTCCTTGCCTCCT	0.622										Prostate(3;0.18)			6	22					0	0	0.003080	0	0
FAM27L	284123	broad.mit.edu	37	17	21825560	21825560	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:21825560C>T	uc002gyz.2	+	1		c.191C>T				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		tcaggcctgcccggagggtgt	0													11	41					0	0	0.001855	0	0
FOXN1	8456	broad.mit.edu	37	17	26856124	26856124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:26856124G>A	uc010crm.2	+	5	910	c.712G>A	c.(712-714)GGT>AGT	p.G238S	FOXN1_uc002hbj.2_Missense_Mutation_p.G238S	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	238					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					CTCGCCAGGTGGTGGCAGCTA	0.577													10	56					0	0	0.000673	0	0
FOXN1	8456	broad.mit.edu	37	17	26856199	26856199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:26856199G>A	uc010crm.2	+	5	985	c.787G>A	c.(787-789)GAT>AAT	p.D263N	FOXN1_uc002hbj.2_Missense_Mutation_p.D263N	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	263					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					GGCCAGCACCGATGGGCACCA	0.597													22	57					0	0	0.006320	0	0
FOXN1	8456	broad.mit.edu	37	17	26861910	26861910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:26861910G>A	uc010crm.2	+	8	1519	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N	FOXN1_uc002hbj.2_Missense_Mutation_p.D441N	NM_003593	NP_003584	O15353	FOXN1_HUMAN	forkhead box N1	441					defense response|embryo development|epithelial cell proliferation|keratinocyte differentiation|organ morphogenesis|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|thymus development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	Lung NSC(42;0.00431)					CCCCCTGCAGGACCTACTTAT	0.657													20	12					0	0	0.002299	0	0
SUPT6H	6830	broad.mit.edu	37	17	27026844	27026845	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27026844_27026845CC>AT	uc002hby.2	+	33	4584_4585	c.4494_4495CC>AT	c.(4492-4497)GGCCAG>GGATAG	p.Q1499*	SUPT6H_uc010crt.2_Nonsense_Mutation_p.Q1499*	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1499					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GGTACCGGGGCCAGATCTTCCC	0.495													24	142					0	0	0.004672	0	0
TRAF4	9618	broad.mit.edu	37	17	27071154	27071154	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27071154C>T	uc002hcs.2	+	1	132	c.24C>T	c.(22-24)TTC>TTT	p.F8F	TRAF4_uc002hcq.1_Silent_p.F8F	NM_004295	NP_004286	Q9BUZ4	TRAF4_HUMAN	TNF receptor-associated factor 4	8					apoptosis|positive regulation of JNK cascade|positive regulation of protein homodimerization activity|positive regulation of protein kinase activity|regulation of apoptosis|signal transduction	cytoskeleton|nucleus|perinuclear region of cytoplasm|tight junction	DNA binding|ubiquitin-protein ligase activity|WW domain binding|zinc ion binding			upper_aerodigestive_tract(1)|lung(1)	2	Lung NSC(42;0.01)		Epithelial(11;3.26e-05)|all cancers(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.235)			ACTACAAGTTCCTGGAGAAGC	0.716													10	16					0	0	0.000673	0	0
PHF12	57649	broad.mit.edu	37	17	27233293	27233293	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27233293C>A	uc002hdg.1	-	15	3453	c.2923G>T	c.(2923-2925)GAT>TAT	p.D975Y	PHF12_uc010wbb.1_Missense_Mutation_p.D957Y	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	975					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			AGGCTGGCATCGCCTTTGGGC	0.597													20	15					3.5997e-14	5.23576e-14	0.002299	1	0
PHF12	57649	broad.mit.edu	37	17	27240101	27240101	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27240101G>A	uc002hdg.1	-	9	2018	c.1488C>T	c.(1486-1488)TGC>TGT	p.C496C	PHF12_uc010wbb.1_Silent_p.C478C|PHF12_uc002hdi.1_Silent_p.C492C|PHF12_uc002hdj.1_Silent_p.C496C|PHF12_uc010crw.1_Silent_p.C199C|PHF12_uc002hdh.1_Silent_p.C279C	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	496	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			TCCCTGAGGGGCAGGACAAGG	0.547													21	64					0	0	0.001882	0	0
MYO18A	399687	broad.mit.edu	37	17	27419908	27419908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27419908G>A	uc002hdt.1	-	33	5196	c.5038C>T	c.(5038-5040)CCC>TCC	p.P1680S	MYO18A_uc010wbc.1_Missense_Mutation_p.P1213S|MYO18A_uc002hds.2_Missense_Mutation_p.P1222S|MYO18A_uc010csa.1_Missense_Mutation_p.P1643S|MYO18A_uc002hdu.1_Missense_Mutation_p.P1680S	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1680	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CGCTTGCTGGGAGCACTGTTC	0.562													27	103					0	0	0.001512	0	0
TAOK1	57551	broad.mit.edu	37	17	27844552	27844552	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27844552C>T	uc002hdz.1	+	16	1980	c.1786C>T	c.(1786-1788)CAA>TAA	p.Q596*	TAOK1_uc010wbe.1_Intron|TAOK1_uc010wbf.1_Nonsense_Mutation_p.Q596*	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	596	Potential.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			ACAGCATTTCCAAGCAGAAGA	0.413													32	116					0	0	0.004289	0	0
SSH2	85464	broad.mit.edu	37	17	27963649	27963649	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:27963649G>A	uc002heo.1	-	14	1518	c.1518C>T	c.(1516-1518)GTC>GTT	p.V506V	SSH2_uc010wbh.1_Silent_p.V533V	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	506					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						GTTCCACAAAGACAGGAGGTA	0.468													35	63					0	0	0.007835	0	0
SLC6A4	6532	broad.mit.edu	37	17	28545857	28545857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:28545857C>T	uc002hey.3	-	4	980	c.436G>A	c.(436-438)GGA>AGA	p.G146R		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	146					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	GAAATGCATCCATTTCGGTGG	0.522													75	52					0	0	0.003610	0	0
CPD	1362	broad.mit.edu	37	17	28712108	28712108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:28712108C>T	uc002hfb.1	+	2	863	c.848C>T	c.(847-849)TCA>TTA	p.S283L	CPD_uc010wbo.1_Missense_Mutation_p.S36L|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	283	Extracellular (Potential).|Carboxypeptidase-like 1.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						AGCAAAACCTCAGATGATGAA	0.418													23	68					0	0	0.002299	0	0
CPD	1362	broad.mit.edu	37	17	28750597	28750597	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:28750597C>T	uc002hfb.1	+	6	1746	c.1731C>T	c.(1729-1731)CTC>CTT	p.L577L	CPD_uc010wbo.1_Silent_p.L330L|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	577	Extracellular (Potential).|Carboxypeptidase-like 2.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						TGTTGAACCTCATAGAATACC	0.378													11	30					0	0	0.000978	0	0
NF1	4763	broad.mit.edu	37	17	29548867	29548867	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:29548867G>A	uc002hgg.2	+	15	1975	c.1642_splice	c.e15-1	p.A548_splice	NF1_uc002hgf.1_Splice_Site_p.A548_splice|NF1_uc002hgh.2_Splice_Site_p.A548_splice|NF1_uc010csn.1_Splice_Site_p.A408_splice	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(3)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AAAAAATTCAGGCTCTGCTGG	0.313			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			7	35					0	0	0.003080	0	0
NF1	4763	broad.mit.edu	37	17	29556419	29556419	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:29556419T>C	uc002hgg.2	+	21	3119	c.2786T>C	c.(2785-2787)CTG>CCG	p.L929P	NF1_uc002hgh.2_Missense_Mutation_p.L929P|NF1_uc010csn.1_Missense_Mutation_p.L789P|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	929					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGTCCTGCTCTGTATCCAATG	0.398			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			57	41					0	0	0.003610	0	0
C17orf75	64149	broad.mit.edu	37	17	30658842	30658842	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:30658842G>A	uc002hhg.2	-	10	1162	c.1131C>T	c.(1129-1131)GCC>GCT	p.A377A		NM_022344	NP_071739	Q9HAS0	NJMU_HUMAN	hypothetical protein LOC64149	377					spermatogenesis					ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			TCACATTTTTGGCTTCAGGCA	0.313													15	57					0	0	0.004007	0	0
TMEM132E	124842	broad.mit.edu	37	17	32956109	32956109	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:32956109G>A	uc002hif.2	+	5	1282	c.954G>A	c.(952-954)AGG>AGA	p.R318R		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	318	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		TCAAGCGGAGGATCATGTGGC	0.612													57	93					0	0	0.003610	0	0
AMAC1	146861	broad.mit.edu	37	17	33520449	33520449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:33520449G>A	uc002hjd.2	-	1	964	c.878C>T	c.(877-879)GCC>GTC	p.A293V		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	293	DUF6 2.|Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CAGTATAAGGGCCACAACCAC	0.577													83	109					0	0	0.003610	0	0
GAS2L2	246176	broad.mit.edu	37	17	34072135	34072135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:34072135C>T	uc002hjv.1	-	6	2409	c.2381G>A	c.(2380-2382)CGA>CAA	p.R794Q		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	794					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCTGGGGATTCGTGAAGGCTG	0.632													43	76					0	0	0.003610	0	0
ACACA	31	broad.mit.edu	37	17	35620782	35620782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:35620782G>A	uc002hnm.2	-	11	1215	c.1024C>T	c.(1024-1026)CCT>TCT	p.P342S	ACACA_uc002hnk.2_Missense_Mutation_p.P264S|ACACA_uc002hnl.2_Missense_Mutation_p.P284S|ACACA_uc002hnn.2_Missense_Mutation_p.P342S|ACACA_uc002hno.2_Missense_Mutation_p.P379S|ACACA_uc010cuz.2_Missense_Mutation_p.P342S	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	342	Biotin carboxylation.|ATP-grasp.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	GGAGATCCAGGAACTTCAGCT	0.363													21	80					0	0	0.001523	0	0
HNF1B	6928	broad.mit.edu	37	17	36093787	36093787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:36093787C>T	uc002hok.3	-	3	793	c.572G>A	c.(571-573)GGA>GAA	p.G191E	HNF1B_uc010wdi.1_Intron|HNF1B_uc010cve.1_5'UTR	NM_000458	NP_000449	P35680	HNF1B_HUMAN	hepatocyte nuclear factor 1-beta isoform 1	191					endocrine pancreas development|genitalia development|kidney development|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric nephron tubule development|regulation of pronephros size	nucleus	DNA binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(25;0.00765)|Ovarian(249;0.15)	STAD - Stomach adenocarcinoma(1;0.0142)			TGTCATATTTCCAGAACTCTG	0.423									Hereditary_Prostate_Cancer				199	254					0	0	0.003610	0	0
CWC25	54883	broad.mit.edu	37	17	36962603	36962603	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:36962603G>A	uc002hqu.2	-	8	1101	c.948C>T	c.(946-948)AGC>AGT	p.S316S	CWC25_uc010wdv.1_Silent_p.S253S|CWC25_uc010wdw.1_RNA	NM_017748	NP_060218	Q9NXE8	CWC25_HUMAN	coiled-coil domain containing 49	316											0						TAGGTGATGGGCTCCTAGTTT	0.502													24	22					0	0	0.006320	0	0
PLXDC1	57125	broad.mit.edu	37	17	37265577	37265577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:37265577C>T	uc002hrg.2	-	3	535	c.323G>A	c.(322-324)TGG>TAG	p.W108*	PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	108	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						CACATCTACCCACAGTTCCCG	0.607													8	25					0	0	0.000673	0	0
MED1	5469	broad.mit.edu	37	17	37583963	37583963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:37583963C>T	uc002hrv.3	-	10	942	c.730G>A	c.(730-732)GAG>AAG	p.E244K	MED1_uc010wee.1_Missense_Mutation_p.E72K|MED1_uc002hru.2_Missense_Mutation_p.E244K	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	244	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		CCATTATTCTCATGCAAAATG	0.353										HNSCC(31;0.082)			18	25					0	0	0.002780	0	0
STARD3	10948	broad.mit.edu	37	17	37817088	37817088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:37817088C>T	uc002hsd.2	+	12	1104	c.980C>T	c.(979-981)ACC>ATC	p.T327I	STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_Missense_Mutation_p.T309I|STARD3_uc010wei.1_Missense_Mutation_p.T327I|STARD3_uc002hsf.2_Missense_Mutation_p.T193I|STARD3_uc002hsg.2_Missense_Mutation_p.T160I	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	327	START.|Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GAAGACAACACCCTCATCTCC	0.617													41	131					0	0	0.003214	0	0
GSDMB	55876	broad.mit.edu	37	17	38073467	38073467	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38073467G>T	uc010cwj.2	-	1	108	c.103C>A	c.(103-105)CGC>AGC	p.R35S	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.R35S|GSDMB_uc002hth.2_Missense_Mutation_p.R35S|GSDMB_uc010wem.1_Missense_Mutation_p.R35S	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	35						cytoplasm				breast(1)|pancreas(1)	2						TGGAAGCAGCGGAATCTATCA	0.483													6	190					0.00307968	0.00441594	0.003080	1	0
GSDMA	284110	broad.mit.edu	37	17	38122606	38122606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38122606G>A	uc002htl.1	+	3	426	c.308G>A	c.(307-309)GGA>GAA	p.G103E	GSDMA_uc002htm.1_Missense_Mutation_p.G103E	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	103					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						AAGGTGAAGGGAACGGCAGGG	0.577													53	62					0	0	0.003610	0	0
GSDMA	284110	broad.mit.edu	37	17	38130526	38130526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38130526G>A	uc002htl.1	+	9	870	c.752G>A	c.(751-753)GGG>GAG	p.G251E	GSDMA_uc002htm.1_Missense_Mutation_p.G251E	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	251					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						GTCCCCATAGGGGACGTACAC	0.557													4	15					0	0	0.003080	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38349645	38349645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38349645C>T	uc010cwu.1	+	14	1712	c.1222C>T	c.(1222-1224)CGC>TGC	p.R408C	RAPGEFL1_uc010wfd.1_Missense_Mutation_p.R344C	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	614	Ras-GEF.				G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAGGACAATCCGCAAATACCG	0.552													31	104					0	0	0.002445	0	0
TNS4	84951	broad.mit.edu	37	17	38652456	38652456	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38652456G>A	uc010cxb.2	-	2	386	c.222C>T	c.(220-222)GCC>GCT	p.A74A		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	74					apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			AGGTGGCTTTGGCCTCCACCT	0.642													14	39					0	0	0.003163	0	0
KRT28	162605	broad.mit.edu	37	17	38953483	38953483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:38953483C>T	uc002hvh.1	-	4	807	c.741G>A	c.(739-741)ATG>ATA	p.M247I		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	247	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GGGCCGCGTTCATCTCCACGT	0.602													40	52					0	0	0.003610	0	0
KRT12	3859	broad.mit.edu	37	17	39019775	39019775	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39019775G>A	uc002hvk.2	-	5	1081	c.1057C>T	c.(1057-1059)CAG>TAG	p.Q353*		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	353	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				TCCAGGTTCTGAAAGGCGCGA	0.557													11	61					0	0	0.000673	0	0
KRT40	125115	broad.mit.edu	37	17	39137388	39137388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39137388G>A	uc010cxh.1	-	6	864	c.703C>T	c.(703-705)CGT>TGT	p.R235C	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	235	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				AGCTGTTCACGAAGCAAGTTG	0.498													64	87					0	0	0.003610	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39253953	39253953	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39253953G>T	uc010wfo.1	-	1	423	c.384C>A	c.(382-384)AGC>AGA	p.S128R		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	128	21.|25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].					keratin filament					0						agatgctgcagctggggcggc	0.109													4	16					1.12685e-05	1.62874e-05	0.004482	1	0
Unknown	0	broad.mit.edu	37	17	39296553	39296553	+	RNA	SNP	G	A	A	rs73983172	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39296553G>A	uc010cxk.1	-	1		c.151C>T								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		cagcagctgggacggcagcAG	0.552													32	50					0	0	0.003755	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316651	39316651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39316651G>A	uc002hwc.2	-	1	333	c.293C>T	c.(292-294)ACC>ATC	p.T98I		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	98	16.|26 X 5 AA repeats of C-C-[GRQVCH]-[SPT]- [VSTQR].		Missing (in allele KAP4.13).|Missing (in allele KAP4.4-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GCAGCAGGTGGTCCTACAGCA	0.657													16	40					0	0	0.006122	0	0
KRT33A	3883	broad.mit.edu	37	17	39506774	39506774	+	Silent	SNP	C	T	T	rs61736449	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39506774C>T	uc002hwk.1	-	1	283	c.246G>A	c.(244-246)GCG>GCA	p.A82A		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	82	Coil 1A.|Rod.			A -> T (in Ref. 3; BAG36784).		intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				TCTCCAGCTCCGCGTTGTCCC	0.602													47	47					0	0	0.003610	0	0
KRT37	8688	broad.mit.edu	37	17	39578669	39578669	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39578669C>T	uc002hwp.1	-	4	797	c.750G>A	c.(748-750)AGG>AGA	p.R250R	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	250	Rod.|Coil 1B.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				CCAGCTGACTCCTCAGAATCT	0.567													45	132					0	0	0.003610	0	0
KRT14	3861	broad.mit.edu	37	17	39740105	39740105	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39740105C>T	uc002hxf.1	-	4	895	c.834G>A	c.(832-834)GTG>GTA	p.V278V	JUP_uc010wfs.1_Intron|KRT14_uc010cxp.1_Silent_p.V278V	NM_000526	NP_000517	P02533	K1C14_HUMAN	keratin 14	278	Rod.|Linker 12.				epidermis development|hemidesmosome assembly|intermediate filament bundle assembly	cytosol|keratin filament|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(1)	1		Breast(137;0.000307)				GGCTCAGGTCCACGCCAGGTG	0.572													58	86					0	0	0.003610	0	0
SC65	10609	broad.mit.edu	37	17	39966001	39966001	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:39966001G>A	uc002hxt.2	-	4	1157	c.873C>T	c.(871-873)TTC>TTT	p.F291F	FKBP10_uc002hxv.2_5'Flank|SC65_uc002hxu.2_Silent_p.F382F	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	291					synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		TGGTGGCCACGAACTTGTCCA	0.577													45	40					0	0	0.003214	0	0
ACLY	47	broad.mit.edu	37	17	40042510	40042510	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40042510G>A	uc002hyg.2	-	18	2090	c.1927C>T	c.(1927-1929)CTG>TTG	p.L643L	ACLY_uc002hyh.2_Silent_p.L633L|ACLY_uc002hyi.2_Silent_p.L697L|ACLY_uc010wfx.1_Silent_p.L687L|ACLY_uc010wfy.1_Silent_p.L372L	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	643					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				ATGTTGTCCAGCATCCCACCT	0.547													7	31					0	0	0.001984	0	0
TTC25	83538	broad.mit.edu	37	17	40094955	40094955	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40094955G>A	uc002hyj.3	+	6	860	c.771G>A	c.(769-771)GAG>GAA	p.E257E	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Intron	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	257						cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				TGATGCAAGAGAAATGGCTGC	0.547													51	104					0	0	0.003610	0	0
KAT2A	2648	broad.mit.edu	37	17	40266928	40266928	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40266928G>A	uc002hyx.2	-	13	2061	c.2001C>T	c.(1999-2001)ATC>ATT	p.I667I	DHX58_uc002hyv.3_5'Flank|DHX58_uc002hyw.3_5'Flank|DHX58_uc010wgf.1_5'Flank	NM_021078	NP_066564	Q92830	KAT2A_HUMAN	general control of amino acid synthesis 5-like	667					chromatin remodeling|histone deubiquitination|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	H3 histone acetyltransferase activity|histone deacetylase binding|protein binding|transcription coactivator activity			upper_aerodigestive_tract(1)|lung(1)	2						GCTTCTTGATGATGTGGGACA	0.552													56	90					0	0	0.003610	0	0
RAB5C	5878	broad.mit.edu	37	17	40278855	40278855	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40278855G>A	uc002hyz.2	-	6	770	c.453C>T	c.(451-453)GCC>GCT	p.A151A	RAB5C_uc002hza.2_Silent_p.A151A|RAB5C_uc010cxx.2_Silent_p.A184A|RAB5C_uc010cxy.2_Silent_p.A63A	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	151					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		CGTCTGCATAGGCTTGTGCTT	0.512													62	114					0	0	0.003610	0	0
STAT3	6774	broad.mit.edu	37	17	40474506	40474506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40474506G>A	uc002hzl.1	-	21	2135	c.1895C>T	c.(1894-1896)ACC>ATC	p.T632I	STAT3_uc002hzk.1_Missense_Mutation_p.T632I|STAT3_uc002hzm.1_Missense_Mutation_p.T632I|STAT3_uc010wgh.1_Missense_Mutation_p.T534I|STAT3_uc002hzn.1_Missense_Mutation_p.T632I	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	632	SH2.				cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		CTGGATCTGGGTCTTACCTGT	0.448									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				30	145					0	0	0.002445	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40620102	40620102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40620102C>T	uc002hzr.2	+	4	438	c.271C>T	c.(271-273)CCC>TCC	p.P91S	ATP6V0A1_uc002hzq.2_Missense_Mutation_p.P91S|ATP6V0A1_uc002hzs.2_Missense_Mutation_p.P91S|ATP6V0A1_uc010wgj.1_Missense_Mutation_p.P91S|ATP6V0A1_uc010wgk.1_Missense_Mutation_p.P91S|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc010wgl.1_5'Flank|ATP6V0A1_uc002hzp.1_Missense_Mutation_p.P91S	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	91	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		GGTTCCCTTCCCCCGGGACAT	0.398													10	30					0	0	0.001855	0	0
NAGLU	4669	broad.mit.edu	37	17	40693186	40693186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40693186C>T	uc002hzv.2	+	5	1323	c.983C>T	c.(982-984)GCC>GTC	p.A328V		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	328						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	TCCTACCTTGCCGCAGCCACC	0.572													34	52					0	0	0.003755	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40843839	40843839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40843839C>T	uc002iay.2	+	16	2576	c.2360C>T	c.(2359-2361)ACC>ATC	p.T787I	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	787	Extracellular (Potential).|Fibrinogen C-terminal.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		TCCTGGAACACCATTTCCTTC	0.577													190	240					0	0	0.003610	0	0
WNK4	65266	broad.mit.edu	37	17	40946635	40946635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:40946635G>A	uc002ibj.2	+	13	2320	c.2299G>A	c.(2299-2301)GAG>AAG	p.E767K	WNK4_uc010wgx.1_Missense_Mutation_p.E431K|WNK4_uc002ibk.1_Missense_Mutation_p.E539K	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	767					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GCCTCAGGAGGAGCCAGCACC	0.577													10	16					0	0	0.000673	0	0
BRCA1	672	broad.mit.edu	37	17	41223166	41223166	+	Missense_Mutation	SNP	G	A	A	rs80357795		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:41223166G>A	uc002icq.2	-	15	4997	c.4765C>T	c.(4765-4767)CGT>TGT	p.R1589C	BRCA1_uc010whp.1_Missense_Mutation_p.R438C|BRCA1_uc010whl.1_Missense_Mutation_p.R485C|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.R1518C|BRCA1_uc002icu.2_Missense_Mutation_p.R485C|BRCA1_uc010cyx.2_Missense_Mutation_p.R1542C|BRCA1_uc002ict.2_Missense_Mutation_p.R1610C|BRCA1_uc010whn.1_Missense_Mutation_p.R80C|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Missense_Mutation_p.R318C|BRCA1_uc002idc.1_Missense_Mutation_p.R485C|BRCA1_uc010whr.1_Missense_Mutation_p.R439C	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1589					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TTGCCAACACGAGCTGACTCT	0.483			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			49	152					0	0	0.003610	0	0
MPP2	4355	broad.mit.edu	37	17	41956706	41956706	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:41956706G>A	uc010wip.1	-	12	1611	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	MPP2_uc002ien.1_Silent_p.F490F|MPP2_uc010wim.1_Silent_p.F462F|MPP2_uc002ieo.1_Silent_p.F473F|MPP2_uc010win.1_Silent_p.F334F|MPP2_uc010wio.1_Silent_p.F462F	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	497	Guanylate kinase-like.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		GCAGGGTCTCGAAGTCTGGGG	0.597													24	57					0	0	0.002780	0	0
HDAC5	10014	broad.mit.edu	37	17	42155754	42155754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42155754G>A	uc002ifd.1	-	27	3570	c.3359C>T	c.(3358-3360)CCT>CTT	p.P1120L	HDAC5_uc002ife.1_Missense_Mutation_p.P1120L|HDAC5_uc002iff.1_Missense_Mutation_p.P1121L|HDAC5_uc010czp.1_Missense_Mutation_p.P1035L	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	1120	Nuclear export signal.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		TCACAGGGCAGGCTCCTGCTC	0.567													15	18					0	0	0.004990	0	0
HDAC5	10014	broad.mit.edu	37	17	42188139	42188140	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42188139_42188140CC>GT	uc002ifd.1	-	3	262_263	c.51_52GG>AC	c.(49-54)TTGGAA>TTACAA	p.E18Q	HDAC5_uc002ife.1_Missense_Mutation_p.E18Q|HDAC5_uc002iff.1_Missense_Mutation_p.E19Q|HDAC5_uc010czp.1_Missense_Mutation_p.E18Q|HDAC5_uc002ifh.2_Missense_Mutation_p.E18Q	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	18					B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		GGCAGGATTTCCAAGGATGGTT	0.569													7	32					0	0	0.004672	0	0
SLC4A1	6521	broad.mit.edu	37	17	42330638	42330638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42330638C>T	uc002igf.3	-	17	2308	c.2159G>A	c.(2158-2160)GGG>GAG	p.G720E		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	720	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCAGGGCATCCCAAAGAGGGC	0.637													22	29					0	0	0.001523	0	0
ITGA2B	3674	broad.mit.edu	37	17	42449737	42449737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42449737C>T	uc002igt.1	-	30	3147	c.3115G>A	c.(3115-3117)GAG>AAG	p.E1039K		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	1039	Cytoplasmic (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CACCATCACTCCCCCTCTTCA	0.577													14	32					0	0	0.006122	0	0
GPATCH8	23131	broad.mit.edu	37	17	42478219	42478220	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42478219_42478220GG>AA	uc002igw.1	-	8	1289_1290	c.1225_1226CC>TT	c.(1225-1227)CCC>TTC	p.P409F	GPATCH8_uc002igv.1_Missense_Mutation_p.P331F|GPATCH8_uc010wiz.1_Missense_Mutation_p.P331F	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	409						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		AAGTAGAAAGGGAAAATTAGGT	0.431											OREG0024461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	98					0	0	0.004672	0	0
FZD2	2535	broad.mit.edu	37	17	42636334	42636334	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42636334C>T	uc002igx.1	+	1	1410	c.1278C>T	c.(1276-1278)ATC>ATT	p.I426I		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	426	Helical; Name=5; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		ACCTGTTCATCGGCACGTCCT	0.642													26	78					0	0	0.005443	0	0
GFAP	2670	broad.mit.edu	37	17	42990641	42990641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:42990641G>A	uc002ihq.2	-	4	836	c.776C>T	c.(775-777)TCC>TTC	p.S259F	GFAP_uc002ihr.2_Missense_Mutation_p.S259F|GFAP_uc010wjg.1_RNA	NM_002055	NP_002046	P14136	GFAP_HUMAN	glial fibrillary acidic protein isoform 1	259	Coil 2B.|Rod.					cytoplasm|intermediate filament	structural constituent of cytoskeleton			ovary(1)|pancreas(1)	2		Prostate(33;0.0959)				GGCTACCTTGGAGCGGTACCA	0.602													60	132					0	0	0.003610	0	0
MAPT	4137	broad.mit.edu	37	17	44067303	44067303	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:44067303C>T	uc002ijr.3	+	8	1562	c.1242C>T	c.(1240-1242)CAC>CAT	p.H414H	MAPT_uc010dau.2_Silent_p.H414H|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	414				H -> L (in Ref. 5; AAC04277).	cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GCCCCAAACACCCCACTCCTG	0.468													127	182					0	0	0.003610	0	0
CDC27	996	broad.mit.edu	37	17	45219350	45219350	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:45219350A>C	uc002ild.3	-	12	1547	c.1420T>G	c.(1420-1422)TTA>GTA	p.L474V	CDC27_uc002ile.3_Missense_Mutation_p.L480V|CDC27_uc002ilf.3_Missense_Mutation_p.L473V|CDC27_uc010wkp.1_Missense_Mutation_p.L413V|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	474					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						CACAAAGCTAAATAACCTTTC	0.378													72	101					0	0	0.003610	0	0
NPEPPS	9520	broad.mit.edu	37	17	45669422	45669422	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:45669422A>T	uc002ilr.3	+	11	1584	c.1361A>T	c.(1360-1362)GAT>GTT	p.D454V	NPEPPS_uc010wkt.1_Missense_Mutation_p.D450V|NPEPPS_uc010wku.1_Missense_Mutation_p.D418V|NPEPPS_uc010wkv.1_Missense_Mutation_p.D8V	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	454					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						TACATTGGGGATAAGGTAAAA	0.343													15	28					0	0	0.006122	0	0
KPNB1	3837	broad.mit.edu	37	17	45753818	45753818	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:45753818C>T	uc002ilt.1	+	16	2292	c.1956C>T	c.(1954-1956)CCC>CCT	p.P652P	KPNB1_uc010wkw.1_Silent_p.P507P|KPNB1_uc010wkx.1_Silent_p.P436P	NM_002265	NP_002256	Q14974	IMB1_HUMAN	karyopherin beta 1	652					DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|protein import into nucleus, translocation|ribosomal protein import into nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein domain specific binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCTTTAAACCCTTCCTGGGCA	0.418													21	36					0	0	0.003330	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46056265	46056266	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46056265_46056266CC>GT	uc002imr.2	+	11	1143_1144	c.1059_1060CC>GT	c.(1057-1062)TTCCTT>TTGTTT	p.353_354FL>LF	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.373_374FL>LF|CDK5RAP3_uc002imq.1_Missense_Mutation_p.128_129FL>LF|CDK5RAP3_uc002imu.2_Missense_Mutation_p.197_198FL>LF|CDK5RAP3_uc002ims.2_Missense_Mutation_p.266_267FL>LF|CDK5RAP3_uc002imv.2_Missense_Mutation_p.197_198FL>LF|CDK5RAP3_uc002imw.2_Missense_Mutation_p.195_196FL>LF|CDK5RAP3_uc002imx.2_Missense_Mutation_p.128_129FL>LF	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	353_354					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						GGAATCAGTTCCTTGATGAGCT	0.559											OREG0024508	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	54					0	0	0.004672	0	0
NFE2L1	4779	broad.mit.edu	37	17	46134780	46134780	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46134780C>T	uc002imz.3	+	5	1539	c.888C>T	c.(886-888)CTC>CTT	p.L296L	NFE2L1_uc002ina.3_Silent_p.L266L|NFE2L1_uc002inb.3_Silent_p.L266L|NFE2L1_uc010wle.1_Silent_p.L108L|NFE2L1_uc010wlf.1_Silent_p.L140L	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	296					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						AAAACAACCTCTTGTCTCCTC	0.483													22	93					0	0	0.002780	0	0
SKAP1	8631	broad.mit.edu	37	17	46262156	46262156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46262156G>A	uc002ini.1	-	7	608	c.496C>T	c.(496-498)CCC>TCC	p.P166S	SKAP1_uc002inj.1_Missense_Mutation_p.P166S|SKAP1_uc010dbd.1_Missense_Mutation_p.P72S|SKAP1_uc010dbe.1_Missense_Mutation_p.P166S	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	166	PH.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						CGCAGGTGGGGGGCCATCCGT	0.542													30	126					0	0	0.001512	0	0
SKAP1	8631	broad.mit.edu	37	17	46265269	46265269	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46265269C>T	uc002ini.1	-	6	490	c.378G>A	c.(376-378)TCG>TCA	p.S126S	SKAP1_uc002inj.1_Silent_p.S126S|SKAP1_uc010dbd.1_Silent_p.S32S|SKAP1_uc010dbe.1_Silent_p.S126S	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	126	PH.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TCTGCCACTCCGATCCAAAGA	0.413													17	26					0	0	0.007413	0	0
HOXB3	3213	broad.mit.edu	37	17	46628188	46628188	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46628188G>A	uc002inn.2	-	2	1204	c.804C>T	c.(802-804)CCC>CCT	p.P268P	HOXB3_uc010wlm.1_Silent_p.P195P|HOXB3_uc010dbf.2_Silent_p.P268P|HOXB3_uc010dbg.2_Silent_p.P268P|HOXB3_uc002ino.2_Silent_p.P268P|HOXB3_uc010wlk.1_Silent_p.P136P|HOXB3_uc010wll.1_Silent_p.P195P	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	268					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGACTGCATGGGCTGCGGGG	0.647											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	70					0	0	0.003610	0	0
HOXB6	3216	broad.mit.edu	37	17	46673838	46673838	+	Silent	SNP	C	T	T	rs141275290	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:46673838C>T	uc002ins.1	-	4	937	c.612G>A	c.(610-612)GAG>GAA	p.E204E	HOXB5_uc002inr.2_5'Flank|HOXB6_uc010dbh.1_Silent_p.E204E|HOXB6_uc002int.1_3'UTR	NM_018952	NP_061825	P17509	HXB6_HUMAN	homeobox B6	204	Homeobox.				anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCAGTTTGCTCTCCTTTTTCC	0.602													89	115					0	0	0.003610	0	0
ABI3	51225	broad.mit.edu	37	17	47295266	47295266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:47295266C>T	uc002iop.1	+	3	949	c.451C>T	c.(451-453)CAT>TAT	p.H151Y	ABI3_uc002ioq.1_Missense_Mutation_p.H145Y	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	151					cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CGACATTGGCCATGGGATCAA	0.617										HNSCC(55;0.14)			40	52					0	0	0.003610	0	0
NGFR	4804	broad.mit.edu	37	17	47583706	47583706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:47583706C>T	uc002ioz.3	+	3	379	c.254C>T	c.(253-255)CCG>CTG	p.P85L		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	85	Extracellular (Potential).|TNFR-Cys 2.				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					CCGTGCAAGCCGTGCACCGAG	0.677													17	26					0	0	0.006122	0	0
DLX3	1747	broad.mit.edu	37	17	48072125	48072125	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:48072125A>T	uc002ipy.2	-	1	464	c.238T>A	c.(238-240)TAC>AAC	p.Y80N		NM_005220	NP_005211	O60479	DLX3_HUMAN	distal-less homeobox 3	80						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTGGGCGAGTAAGCGCCCGTG	0.622													40	50					0	0	0.006230	0	0
RSAD1	55316	broad.mit.edu	37	17	48559688	48559688	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:48559688C>T	uc002iqw.1	+	4	767	c.711C>T	c.(709-711)TTC>TTT	p.F237F	RSAD1_uc010wmq.1_RNA	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	237					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CCGCACTCTTCGCCCAGGTGC	0.682											OREG0024567	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	86					0	0	0.004289	0	0
RSAD1	55316	broad.mit.edu	37	17	48559767	48559767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:48559767C>T	uc002iqw.1	+	4	846	c.790C>T	c.(790-792)CTT>TTT	p.L264F	RSAD1_uc010wmq.1_RNA	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	264					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			CCGGGCTGTCCTTCGGGAGGC	0.652											OREG0024567	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	22					0	0	0.002299	0	0
TOB1	10140	broad.mit.edu	37	17	48940550	48940550	+	Missense_Mutation	SNP	G	A	A	rs150689356		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:48940550G>A	uc002isw.2	-	1	864	c.829C>T	c.(829-831)CCT>TCT	p.P277S	TOB1_uc010wmy.1_Missense_Mutation_p.P277S|TOB1_uc010wmz.1_Missense_Mutation_p.P277S	NM_005749	NP_005740	P50616	TOB1_HUMAN	transducer of ERBB2, 1	277					negative regulation of cell proliferation		SH3/SH2 adaptor activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			TGCATATTAGGAAAAATAAAT	0.308													24	32					0	0	0.002780	0	0
SPAG9	9043	broad.mit.edu	37	17	49197823	49197823	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:49197823G>A	uc002itc.2	-	1	404	c.195C>T	c.(193-195)TTC>TTT	p.F65F	SPAG9_uc002itb.2_Silent_p.F65F|SPAG9_uc002itd.2_Silent_p.F65F	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	65					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			GGTCCTGCGCGAACACCGAGT	0.642													4	18					0	0	0.000602	0	0
STXBP4	252983	broad.mit.edu	37	17	53078208	53078208	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:53078208A>T	uc002iuf.1	+	7	745	c.538A>T	c.(538-540)ACT>TCT	p.T180S	STXBP4_uc010dcc.1_Missense_Mutation_p.T105S|STXBP4_uc010dcd.1_Missense_Mutation_p.T180S	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	180						cytoplasm	calcium ion binding			ovary(1)	1						GATTCCAATTACTTCAGAAAA	0.328													50	52					0	0	0.003610	0	0
C17orf67	339210	broad.mit.edu	37	17	54892321	54892321	+	Missense_Mutation	SNP	G	A	A	rs143175206	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:54892321G>A	uc010dci.2	-	2	144	c.137C>T	c.(136-138)CCG>CTG	p.P46L	C17orf67_uc002iuq.2_RNA	NM_001085430	NP_001078899	Q0P5P2	CQ067_HUMAN	hypothetical protein LOC339210 precursor	46						extracellular region					0	Breast(9;2.49e-06)					TGTCAAAATCGGGGAGGTCTC	0.522													64	246					0	0	0.003610	0	0
OR4D2	124538	broad.mit.edu	37	17	56247806	56247806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:56247806C>T	uc010wnp.1	+	1	790	c.790C>T	c.(790-792)CCA>TCA	p.P264S		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GCCCTTCACTCCATTCCCTAT	0.547													45	86					0	0	0.003610	0	0
LPO	4025	broad.mit.edu	37	17	56329578	56329578	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:56329578G>A	uc002ivt.2	+	8	1132	c.816G>A	c.(814-816)GGG>GGA	p.G272G	LPO_uc010wns.1_Silent_p.G213G|LPO_uc010dcp.2_Silent_p.G189G|LPO_uc010dcq.2_Intron|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	272					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GGACTCAAGGGAAATGCATGC	0.602													18	48					0	0	0.007413	0	0
TEX14	56155	broad.mit.edu	37	17	56643154	56643154	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:56643154C>T	uc010dcz.1	-	28	4174	c.4056G>A	c.(4054-4056)ACG>ACA	p.T1352T	TEX14_uc002iwr.1_Silent_p.T1346T|TEX14_uc002iws.1_Silent_p.T1306T|TEX14_uc010dda.1_Silent_p.T1086T	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	1352						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CATGCAACACCGTGGATGAGC	0.453													13	9					0	0	0.003163	0	0
TEX14	56155	broad.mit.edu	37	17	56692659	56692659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:56692659G>A	uc010dcz.1	-	8	951	c.833C>T	c.(832-834)CCC>CTC	p.P278L	TEX14_uc002iwr.1_Missense_Mutation_p.P272L|TEX14_uc002iws.1_Missense_Mutation_p.P272L|TEX14_uc010dda.1_Missense_Mutation_p.P52L	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	278	Protein kinase.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGGTGGGTGGGGAGATTCAG	0.557													19	74					0	0	0.001523	0	0
RAD51C	5889	broad.mit.edu	37	17	56774133	56774133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:56774133G>A	uc002iwu.2	+	3	526	c.484G>A	c.(484-486)GGA>AGA	p.G162R	RAD51C_uc010woa.1_Missense_Mutation_p.G162R|RAD51C_uc010ddc.2_RNA|RAD51C_uc002iwv.2_Intron|RAD51C_uc002iww.2_Intron|RAD51C_uc010wob.1_RNA	NM_058216	NP_478123	O43502	RA51C_HUMAN	RAD51 homolog C isoform 1	162					blood coagulation|DNA repair	mitochondrion|nucleoplasm|perinuclear region of cytoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGATACAGAGGGAAGTTTTAT	0.423								Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2				18	63					0	0	0.001216	0	0
C17orf71	55181	broad.mit.edu	37	17	57288906	57288906	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:57288906C>T	uc002ixi.2	+	1	1536	c.1494C>T	c.(1492-1494)AAC>AAT	p.N498N		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	498					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TCTCAGAAAACCGATGCCAAA	0.423													8	37					0	0	0.003080	0	0
CLTC	1213	broad.mit.edu	37	17	57738836	57738836	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:57738836G>A	uc002ixq.1	+	8	1643	c.1200G>A	c.(1198-1200)CGG>CGA	p.R400R	CLTC_uc002ixp.2_Silent_p.R400R|CLTC_uc002ixr.1_Silent_p.R404R	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	400	Globular terminal domain.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CTATCCGTCGGTTCCAGAGTG	0.448			T	ALK|TFE3	ALCL|renal 								48	92					0	0	0.003610	0	0
BRIP1	83990	broad.mit.edu	37	17	59760695	59760695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:59760695G>A	uc002izk.1	-	20	3853	c.3712C>T	c.(3712-3714)CCT>TCT	p.P1238S		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	1238					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						TTTTTGGAAGGAGATGGTTTA	0.289			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				39	54					0	0	0.007835	0	0
MED13	9969	broad.mit.edu	37	17	60106997	60106997	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:60106997A>G	uc002izo.2	-	8	1265	c.1188T>C	c.(1186-1188)GCT>GCC	p.A396A	MED13_uc002izp.2_Silent_p.A12A	NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	396					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CACCTGATGAAGCAGAATACT	0.338													19	41					0	0	0.001523	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60348281	60348281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:60348281G>A	uc002izq.2	-	7	606	c.494C>T	c.(493-495)ACC>ATC	p.T165I	TBC1D3P2_uc010woz.1_Intron|uc010wpa.1_5'Flank					SubName: Full=Putative uncharacterized protein TBC1D3E;												0						GGCTTACTTGGTTCCGTATCG	0.557													6	229					0	0	0.003954	0	0
MRC2	9902	broad.mit.edu	37	17	60754805	60754805	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:60754805C>T	uc002jad.2	+	12	2412	c.2010C>T	c.(2008-2010)CCC>CCT	p.P670P	MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	670	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTCCTGTCCCCAGGGCTGGG	0.672													17	15					0	0	0.001216	0	0
MRC2	9902	broad.mit.edu	37	17	60768038	60768038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:60768038G>A	uc002jad.2	+	27	4330	c.3928G>A	c.(3928-3930)GAG>AAG	p.E1310K	MRC2_uc002jae.2_Missense_Mutation_p.E381K|MRC2_uc002jaf.2_Missense_Mutation_p.E176K	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1310	Extracellular (Potential).|C-type lectin 8.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGATGAGATGGAGAATGTGTT	0.637													18	53					0	0	0.001523	0	0
MARCH10	162333	broad.mit.edu	37	17	60814508	60814508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:60814508C>T	uc010ddr.2	-	6	959	c.721G>A	c.(721-723)GGA>AGA	p.G241R	MARCH10_uc002jag.3_Missense_Mutation_p.G241R|MARCH10_uc010dds.2_Missense_Mutation_p.G279R|MARCH10_uc002jah.2_Missense_Mutation_p.G240R|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	241							ligase activity|zinc ion binding				0						CTATTTTTTCCTTGGAAGGCC	0.532													56	72					0	0	0.003610	0	0
TANC2	26115	broad.mit.edu	37	17	61497945	61497945	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:61497945C>T	uc002jal.3	+	25	4625	c.4602C>T	c.(4600-4602)TCC>TCT	p.S1534S	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Silent_p.S645S	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1534							binding			ovary(2)	2						CTCCCCCTTCCCCTCTCCGGA	0.597													8	19					0	0	0.003080	0	0
ACE	1636	broad.mit.edu	37	17	61566478	61566478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:61566478C>T	uc002jau.1	+	17	2648	c.2626C>T	c.(2626-2628)CCT>TCT	p.P876S	ACE_uc002jav.1_Missense_Mutation_p.P302S|ACE_uc010ddv.1_Missense_Mutation_p.P103S|ACE_uc010wpj.1_Missense_Mutation_p.P302S|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Intron	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	876	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GGGGCCCATTCCTGCTCACCT	0.632													10	22					0	0	0.000673	0	0
ACE	1636	broad.mit.edu	37	17	61571337	61571337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:61571337C>T	uc002jau.1	+	21	3213	c.3191C>T	c.(3190-3192)CCC>CTC	p.P1064L	ACE_uc002jav.1_Missense_Mutation_p.P490L|ACE_uc010ddv.1_Missense_Mutation_p.P291L|ACE_uc010wpj.1_Missense_Mutation_p.P490L|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.P310L	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1064	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GCCTTTATCCCCTTCAGCTAC	0.542													11	61					0	0	0.001368	0	0
ACE	1636	broad.mit.edu	37	17	61571734	61571734	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:61571734C>T	uc002jau.1	+	22	3305	c.3283C>T	c.(3283-3285)CTG>TTG	p.L1095L	ACE_uc002jav.1_Silent_p.L521L|ACE_uc010ddv.1_Silent_p.L322L|ACE_uc010wpj.1_Silent_p.L521L|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.L341L	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1095	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ACTCGACAGGCTGAAGTACCA	0.552													9	20					0	0	0.000673	0	0
SCN4A	6329	broad.mit.edu	37	17	62034588	62034588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:62034588C>T	uc002jds.1	-	13	2387	c.2310G>A	c.(2308-2310)ATG>ATA	p.M770I		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	770	II.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CGGCCACCTCCATGCAGTCCC	0.607													27	26					0	0	0.001786	0	0
DDX5	1655	broad.mit.edu	37	17	62496442	62496442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:62496442G>A	uc002jek.2	-	13	1691	c.1444C>T	c.(1444-1446)CGT>TGT	p.R482C	DDX5_uc010deh.2_Missense_Mutation_p.R482C|DDX5_uc002jej.2_Missense_Mutation_p.R377C|DDX5_uc010wqa.1_Missense_Mutation_p.R403C	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	482					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			CCCCTGGAACGACCTGTCAAG	0.418			T	ETV4	prostate								42	46					0	0	0.002522	0	0
RGS9	8787	broad.mit.edu	37	17	63223473	63223473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:63223473C>T	uc002jfe.2	+	19	2083	c.1973C>T	c.(1972-1974)TCG>TTG	p.S658L	RGS9_uc002jfd.2_Missense_Mutation_p.S655L|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.S429L	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	658					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						ACAGGAGAGTCGGGTGACCGG	0.582													17	35					0	0	0.006122	0	0
HELZ	9931	broad.mit.edu	37	17	65156472	65156472	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:65156472G>A	uc010wqk.1	-	17	2272	c.2085C>T	c.(2083-2085)CTC>CTT	p.L695L	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Silent_p.L694L	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					GGGTGCAAATGAGAATCCTGC	0.358													13	29					0	0	0.001855	0	0
WIPI1	55062	broad.mit.edu	37	17	66431803	66431803	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:66431803G>A	uc010dey.2	-	6	670	c.579C>T	c.(577-579)ACC>ACT	p.T193T	WIPI1_uc002jhd.3_RNA|WIPI1_uc010wqo.1_Silent_p.T111T|WIPI1_uc002jhe.3_RNA	NM_017983	NP_060453	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting	193	WD 1.				macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding				0						AGGCATTGAAGGTGATGGCAG	0.517											OREG0024688	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	83					0	0	0.007291	0	0
ABCA8	10351	broad.mit.edu	37	17	66871789	66871789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:66871789C>T	uc002jhp.2	-	34	4515	c.4336G>A	c.(4336-4338)GAC>AAC	p.D1446N	ABCA8_uc002jhq.2_Missense_Mutation_p.D1486N|ABCA8_uc010wqq.1_Missense_Mutation_p.D1481N	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1446	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GCCACTCGGTCACACACGGCC	0.557													27	39					0	0	0.002096	0	0
ABCA8	10351	broad.mit.edu	37	17	66928584	66928584	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:66928584G>A	uc002jhp.2	-	6	821	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ABCA8_uc002jhq.2_Silent_p.F214F|ABCA8_uc010wqq.1_Silent_p.F214F|ABCA8_uc010wqr.1_Silent_p.F153F|ABCA8_uc002jhr.2_Silent_p.F214F|ABCA8_uc002jhs.2_Silent_p.F214F|ABCA8_uc002jht.2_Silent_p.F214F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	214						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ATTGACCAATGAAGGAATGCA	0.338													18	88					0	0	0.001523	0	0
ABCA9	10350	broad.mit.edu	37	17	66982341	66982341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:66982341C>T	uc002jhu.2	-	32	4315	c.4172G>A	c.(4171-4173)GGT>GAT	p.G1391D	ABCA9_uc010dez.2_Missense_Mutation_p.G1353D	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1391	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TTTCCTGAGACCTTTCACGGC	0.587													18	81					0	0	0.007413	0	0
ABCA9	10350	broad.mit.edu	37	17	67012496	67012496	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:67012496C>T	uc002jhu.2	-	22	3080	c.2937G>A	c.(2935-2937)CGG>CGA	p.R979R	ABCA9_uc010dez.2_Silent_p.R979R	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	979					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					AGCAATTCAGCCGTTTTGTAT	0.353													49	55					0	0	0.003610	0	0
KCNJ16	3773	broad.mit.edu	37	17	68129217	68129217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:68129217G>A	uc002jin.2	+	5	1475	c.989G>A	c.(988-990)GGA>GAA	p.G330E	KCNJ16_uc002jio.2_Missense_Mutation_p.G330E|KCNJ16_uc002jip.2_Missense_Mutation_p.G330E|KCNJ16_uc002jiq.2_Missense_Mutation_p.G362E	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	330	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					CAGTTTGAAGGAAGTGTGGAA	0.453													13	56					0	0	0.003163	0	0
COG1	9382	broad.mit.edu	37	17	71197773	71197773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:71197773C>T	uc002jjg.2	+	7	1843	c.1807C>T	c.(1807-1809)CTC>TTC	p.L603F	COG1_uc002jjh.2_Missense_Mutation_p.L603F|COG1_uc002jjf.1_Missense_Mutation_p.L603F	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	603					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			ACAGGATGCCCTCAACAGTGC	0.572													4	23					0	0	0.000248	0	0
SDK2	54549	broad.mit.edu	37	17	71427751	71427751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:71427751G>A	uc010dfm.2	-	11	1370	c.1370C>T	c.(1369-1371)TCG>TTG	p.S457L	SDK2_uc010dfn.2_Missense_Mutation_p.S136L	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	457	Ig-like C2-type 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GAGGCTGCCCGACTCCAGGGG	0.652													20	60					0	0	0.001216	0	0
DNAI2	64446	broad.mit.edu	37	17	72278110	72278110	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72278110C>T	uc002jkf.2	+	2	253	c.154C>T	c.(154-156)CAG>TAG	p.Q52*	DNAI2_uc002jkg.2_RNA|DNAI2_uc010dfp.2_RNA	NM_023036	NP_075462	Q9GZS0	DNAI2_HUMAN	dynein, axonemal, intermediate polypeptide 2	52					cilium assembly	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	microtubule motor activity			ovary(2)|central_nervous_system(1)	3						CACGGGCATCCAGTGCTCGAT	0.662									Kartagener_syndrome				42	49					0	0	0.003214	0	0
KIF19	124602	broad.mit.edu	37	17	72338102	72338102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72338102G>A	uc002jkm.3	+	3	346	c.208G>A	c.(208-210)GCC>ACC	p.A70T	KIF19_uc002jkj.2_Missense_Mutation_p.A70T|KIF19_uc002jkk.2_Missense_Mutation_p.A70T|KIF19_uc002jkl.2_Missense_Mutation_p.A70T	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	70	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GTTCGACGTGGCCTTTGACTT	0.662													56	82					0	0	0.003610	0	0
CD300A	11314	broad.mit.edu	37	17	72469699	72469699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72469699G>A	uc002jkv.2	+	2	386	c.65G>A	c.(64-66)AGG>AAG	p.R22K	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	22	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGCAAATGCAGGACCGTGGCG	0.587													35	56					0	0	0.003214	0	0
FDXR	2232	broad.mit.edu	37	17	72862330	72862330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72862330G>A	uc002jly.2	-	5	517	c.430C>T	c.(430-432)CCT>TCT	p.P144S	FDXR_uc010wri.1_Missense_Mutation_p.P92S|FDXR_uc010wrj.1_Missense_Mutation_p.P142S|FDXR_uc002jlw.2_5'UTR|FDXR_uc002jlx.2_Missense_Mutation_p.P144S|FDXR_uc002jmc.2_Missense_Mutation_p.P145S|FDXR_uc010wrk.1_Missense_Mutation_p.P175S|FDXR_uc010wrl.1_Missense_Mutation_p.P187S|FDXR_uc002jma.2_Missense_Mutation_p.P145S|FDXR_uc010wrm.1_Missense_Mutation_p.P104S|FDXR_uc002jlz.2_Missense_Mutation_p.P136S|FDXR_uc002jmb.2_RNA	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	144					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TCCTCACCAGGAATTTCCAGG	0.647													28	37					0	0	0.002096	0	0
OTOP2	92736	broad.mit.edu	37	17	72926903	72926903	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72926903G>A	uc010wrp.1	+	7	1262	c.1173G>A	c.(1171-1173)GTG>GTA	p.V391V		NM_178160	NP_835454	Q7RTS6	OTOP2_HUMAN	otopetrin 2	391	Helical; (Potential).					integral to membrane				ovary(3)|large_intestine(1)	4	all_lung(278;0.172)|Lung NSC(278;0.207)					TGGCTGTGGTGGCGGGCACAC	0.607													25	32					0	0	0.003954	0	0
OTOP3	347741	broad.mit.edu	37	17	72945387	72945387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72945387G>A	uc010wrr.1	+	7	1667	c.1667G>A	c.(1666-1668)GGG>GAG	p.G556E	OTOP3_uc010wrq.1_Missense_Mutation_p.G538E	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	556						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					TTTGAGAACGGGCTAGAAAAG	0.567													25	90					0	0	0.001512	0	0
C17orf28	283987	broad.mit.edu	37	17	72954853	72954853	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:72954853G>A	uc002jmj.3	-	10	1304	c.1155C>T	c.(1153-1155)TTC>TTT	p.F385F	C17orf28_uc010wrs.1_Silent_p.F184F	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	385	Helical; (Potential).					integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					CGAAGAAGAGGAATTTCTAGG	0.617											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	11					0	0	0.002450	0	0
NUP85	79902	broad.mit.edu	37	17	73214293	73214293	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:73214293C>T	uc002jng.1	+	7	749	c.489C>T	c.(487-489)CTC>CTT	p.L163L	NUP85_uc010dgd.1_Silent_p.L163L|NUP85_uc010wrv.1_Silent_p.L117L	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	163					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			GCCCTCTCCTCCTCCATCTCC	0.522													16	57					0	0	0.004007	0	0
GALK1	2584	broad.mit.edu	37	17	73758813	73758813	+	Silent	SNP	G	A	A	rs146095595		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:73758813G>A	uc010wsi.1	-	5	828	c.765C>T	c.(763-765)CTC>CTT	p.L255L	GALK1_uc002jpk.2_Silent_p.L255L|GALK1_uc010wsj.1_3'UTR	NM_000154	NP_000145	P51570	GALK1_HUMAN	galactokinase 1	255					galactose catabolic process	cytosol	ATP binding|galactokinase activity|galactose binding				0	all_cancers(13;1.5e-07)		all cancers(21;1.03e-06)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GTACCTCCCGGAGGCTTTCCT	0.637													26	34					0	0	0.001512	0	0
EVPL	2125	broad.mit.edu	37	17	74004206	74004206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:74004206C>T	uc002jqi.2	-	22	5308	c.5080G>A	c.(5080-5082)GGG>AGG	p.G1694R	EVPL_uc010wss.1_Missense_Mutation_p.G1716R|EVPL_uc010wst.1_Missense_Mutation_p.G1164R	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1694	Globular 2.|Plectin 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						ATGTCCTTCCCCGTCTCGGGT	0.617													21	68					0	0	0.001882	0	0
EVPL	2125	broad.mit.edu	37	17	74014603	74014603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:74014603C>T	uc002jqi.2	-	12	1591	c.1363G>A	c.(1363-1365)GGG>AGG	p.G455R	EVPL_uc010wss.1_Missense_Mutation_p.G455R|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	455	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TTGGTCTCCCCGCCAGGGCCC	0.647													19	14					0	0	0.002299	0	0
EVPL	2125	broad.mit.edu	37	17	74015058	74015058	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:74015058C>T	uc002jqi.2	-	11	1449	c.1221G>A	c.(1219-1221)CAG>CAA	p.Q407Q	EVPL_uc010wss.1_Silent_p.Q407Q|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	407	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGTTTCTTCGCTGTGGCAGAG	0.682													7	15					0	0	0.004482	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74623646	74623646	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:74623646T>G	uc002jsh.2	-	3	1025	c.851A>C	c.(850-852)AAG>ACG	p.K284T	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.K152T|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	284	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						GGCTTTGATCTTCACAGAGTC	0.562													50	52					0	0	0.003610	0	0
TNRC6C	57690	broad.mit.edu	37	17	76094559	76094559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:76094559C>T	uc002jud.2	+	18	5042	c.4442C>T	c.(4441-4443)CCC>CTC	p.P1481L	TNRC6C_uc002juf.2_Missense_Mutation_p.P1517L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1481	Sufficient for translational repression when tethered to a target mRNA.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			TTAACCAATCCCAAGCCCTCC	0.622													21	71					0	0	0.001216	0	0
PGS1	9489	broad.mit.edu	37	17	76400049	76400049	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:76400049C>T	uc002jvm.2	+	7	1293	c.1281C>T	c.(1279-1281)GCC>GCT	p.A427A	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_Silent_p.A140A|PGS1_uc002jvo.2_RNA|PGS1_uc002jvp.1_Silent_p.A140A	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	427					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			TGGCCGGCGCCATCCCAGCGG	0.632													17	40					0	0	0.001216	0	0
DNAH17	8632	broad.mit.edu	37	17	76498986	76498986	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:76498986G>A	uc010wtu.1	-	6	1116	c.939C>T	c.(937-939)ATC>ATT	p.I313I	uc002jvt.1_RNA					full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GGTAGTCCAGGATCCACTGCT	0.622													15	45					0	0	0.004990	0	0
LGALS3BP	3959	broad.mit.edu	37	17	76972097	76972097	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:76972097A>C	uc002jwh.2	-	3	373	c.194T>G	c.(193-195)CTG>CGG	p.L65R	LGALS3BP_uc002jwi.2_Intron|LGALS3BP_uc010dhr.2_Intron	NM_005567	NP_005558	Q08380	LG3BP_HUMAN	galectin 3 binding protein	65	SRCR.				cell adhesion|cellular defense response	extracellular space|membrane|proteinaceous extracellular matrix	protein binding|scavenger receptor activity			central_nervous_system(3)|ovary(1)	4			BRCA - Breast invasive adenocarcinoma(99;0.0677)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CTCGAAGCCCAGGGCCCGGCA	0.647													15	16					0	0	0.004990	0	0
CANT1	124583	broad.mit.edu	37	17	76993104	76993104	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:76993104G>A	uc002jwn.2	-	4	1040	c.601C>T	c.(601-603)CTG>TTG	p.L201L	CANT1_uc002jwk.2_Silent_p.L201L|CANT1_uc002jwj.2_Silent_p.L201L|CANT1_uc002jwl.2_RNA|CANT1_uc002jwm.1_5'Flank	NM_001159772	NP_001153244	Q8WVQ1	CANT1_HUMAN	calcium activated nucleotidase 1	201	Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	endoplasmic reticulum membrane|Golgi cisterna membrane|integral to membrane	calcium ion binding|nucleoside-diphosphatase activity|signal transducer activity				0			BRCA - Breast invasive adenocarcinoma(99;0.0362)|OV - Ovarian serous cystadenocarcinoma(97;0.139)			CCGTCGGACAGAATCACCCAG	0.587			T	ETV4	prostate								63	207					0	0	0.003610	0	0
TBC1D16	125058	broad.mit.edu	37	17	77984358	77984358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:77984358G>A	uc002jxj.2	-	3	496	c.380C>T	c.(379-381)CCG>CTG	p.P127L		NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	127						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			CAGCTCCGTCGGGGAGGGCTG	0.701													7	22					0	0	0.003080	0	0
GAA	2548	broad.mit.edu	37	17	78084763	78084763	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:78084763C>T	uc002jxo.2	+	12	1757	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	GAA_uc002jxp.2_Silent_p.F525F|GAA_uc002jxq.2_Silent_p.F525F	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	525					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	CTTCCAACTTCATCAGGGGCT	0.602													22	39					0	0	0.003330	0	0
GAA	2548	broad.mit.edu	37	17	78086482	78086482	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:78086482C>T	uc002jxo.2	+	14	2042	c.1860C>T	c.(1858-1860)TCC>TCT	p.S620S	GAA_uc002jxp.2_Silent_p.S620S|GAA_uc002jxq.2_Silent_p.S620S	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	620					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	TGTGGAGCTCCTGGGAGCAGC	0.687													13	11					0	0	0.002450	0	0
CARD14	79092	broad.mit.edu	37	17	78162266	78162266	+	Missense_Mutation	SNP	G	A	A	rs144570537		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:78162266G>A	uc002jxw.1	+	5	961	c.766G>A	c.(766-768)GAC>AAC	p.D256N	CARD14_uc002jxt.1_RNA|CARD14_uc002jxv.2_Missense_Mutation_p.D256N|CARD14_uc010wud.1_RNA|CARD14_uc002jxx.2_Missense_Mutation_p.D19N|CARD14_uc010dhu.1_Missense_Mutation_p.D54N	NM_024110	NP_077015	Q9BXL6	CAR14_HUMAN	caspase recruitment domain protein 14 isoform 1	256	Potential.				activation of NF-kappaB-inducing kinase activity|positive regulation of protein phosphorylation|regulation of apoptosis	aggresome|cytoplasm|plasma membrane	CARD domain binding			ovary(4)|skin(1)	5	all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.017)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			GACAGCCAGCGACCAGGAGTC	0.592													19	37					0	0	0.001882	0	0
RPTOR	57521	broad.mit.edu	37	17	78866666	78866666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:78866666G>A	uc002jyt.1	+	19	3044	c.2239G>A	c.(2239-2241)GAA>AAA	p.E747K	RPTOR_uc010wug.1_Missense_Mutation_p.E589K	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	747					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						TTTGACAGAGGAATGTAAGAT	0.498													57	78					0	0	0.003610	0	0
AZI1	22994	broad.mit.edu	37	17	79177299	79177299	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79177299G>A	uc002jzp.1	-	6	824	c.624C>T	c.(622-624)TCC>TCT	p.S208S	AZI1_uc002jzn.1_Silent_p.S208S|AZI1_uc002jzo.1_Silent_p.S208S|AZI1_uc010wum.1_Silent_p.S208S	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	208					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTTACTTGAGGGAGGGGGCAG	0.662													6	8					0	0	0.001168	0	0
AZI1	22994	broad.mit.edu	37	17	79193716	79193716	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79193716G>A	uc002jzp.1	-	2	341	c.141C>T	c.(139-141)TCC>TCT	p.S47S	AZI1_uc002jzn.1_Silent_p.S47S|AZI1_uc002jzo.1_Silent_p.S47S|AZI1_uc010wum.1_Silent_p.S47S	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	47					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTGTGACCACGGAGACAGAGC	0.652													83	67					0	0	0.003610	0	0
BAHCC1	57597	broad.mit.edu	37	17	79408918	79408918	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79408918C>T	uc002kaf.2	+	3	543	c.543C>T	c.(541-543)TTC>TTT	p.F181F	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	181							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			ACCACAACTTCCCCAGCGTGG	0.677													24	92					0	0	0.006320	0	0
BAHCC1	57597	broad.mit.edu	37	17	79410252	79410252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79410252C>T	uc002kaf.2	+	3	1877	c.1877C>T	c.(1876-1878)CCG>CTG	p.P626L	BAHCC1_uc002kae.2_5'Flank	NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	626							DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CTGCCTGCGCCGCCGGACGAG	0.662													4	27					0	0	0.000248	0	0
ARL16	339231	broad.mit.edu	37	17	79650601	79650601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79650601C>T	uc002kbf.2	-	2	256	c.157G>A	c.(157-159)GGC>AGC	p.G53S	ARL16_uc002kbe.2_5'UTR|HGS_uc010wus.1_5'Flank|HGS_uc002kbg.2_5'Flank	NM_001040025	NP_001035114	Q0P5N6	ARL16_HUMAN	ADP-ribosylation factor-like 16	53							GTP binding				0	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CCCAGGTCGCCTTTCCCATCC	0.731													4	9					0	0	0.000248	0	0
ARHGDIA	396	broad.mit.edu	37	17	79827093	79827093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79827093G>A	uc002kbp.2	-	4	410	c.371C>T	c.(370-372)TCC>TTC	p.S124F	ARHGDIA_uc002kjk.1_5'UTR|ARHGDIA_uc002kbq.2_Missense_Mutation_p.S124F|ARHGDIA_uc002kbr.2_Missense_Mutation_p.S124F|ARHGDIA_uc002kbs.1_Intron|ARHGDIA_uc002kbt.1_Missense_Mutation_p.S124F|ARHGDIA_uc010dig.1_RNA	NM_004309	NP_004300	P52565	GDIR1_HUMAN	Rho GDP dissociation inhibitor (GDI) alpha	124					anti-apoptosis|cellular component movement|negative regulation of axonogenesis|negative regulation of cell adhesion|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoskeleton|cytosol	GTPase activator activity|identical protein binding|Rho GDP-dissociation inhibitor activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CTTCATGCCGGACACTATCTC	0.657													30	28					0	0	0.002096	0	0
NOTUM	147111	broad.mit.edu	37	17	79913410	79913410	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79913410G>A	uc010wvg.1	-	9	1271	c.999C>T	c.(997-999)TTC>TTT	p.F333F		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	333						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			ACTGCACCACGAACACAGGGC	0.701													13	19					0	0	0.004990	0	0
NOTUM	147111	broad.mit.edu	37	17	79916234	79916235	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:79916234_79916235CC>TT	uc010wvg.1	-	5	840_841	c.568_569GG>AA	c.(568-570)GGG>AAG	p.G190K		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	190						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			GGATGAAGCCCCGCTCCAAACA	0.421													7	47					0	0	0.004672	0	0
CD7	924	broad.mit.edu	37	17	80274552	80274552	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:80274552G>A	uc002kel.1	-	2	497	c.388C>T	c.(388-390)CTG>TTG	p.L130L	CD7_uc010din.2_Silent_p.L130L|CD7_uc002kem.2_Missense_Mutation_p.P111L|CD7_uc010wvk.1_Silent_p.L130L	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	130	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			CCTGTCACCAGGACCAGGGTG	0.657													47	66					0	0	0.003610	0	0
TEX19	400629	broad.mit.edu	37	17	80320274	80320274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:80320274G>A	uc002keq.2	+	2	557	c.248G>A	c.(247-249)TGG>TAG	p.W83*		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	83						nucleus					0						GAGCTGAGCTGGGGGCAGAGC	0.642													11	44					0	0	0.000673	0	0
UTS2R	2837	broad.mit.edu	37	17	80332317	80332317	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:80332317G>A	uc010wvl.1	+	1	117	c.117G>A	c.(115-117)CCG>CCA	p.P39P		NM_018949	NP_061822	Q9UKP6	UR2R_HUMAN	urotensin 2 receptor	39	Extracellular (Potential).					integral to membrane|plasma membrane				breast(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			GGGCCAGCCCGACCGAGCCCA	0.716													8	8					0	0	0.000673	0	0
NARF	26502	broad.mit.edu	37	17	80442739	80442739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr17:80442739C>T	uc002kfg.3	+	9	1024	c.884C>T	c.(883-885)TCA>TTA	p.S295L	NARF_uc002kff.3_Missense_Mutation_p.S236L|NARF_uc010wvp.1_3'UTR|NARF_uc010dit.2_Missense_Mutation_p.S341L|NARF_uc002kfj.3_Missense_Mutation_p.S247L|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.S341L|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	295						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GGAGCCAGCTCAGACGGGCAC	0.537													31	51					0	0	0.003271	0	0
COLEC12	81035	broad.mit.edu	37	18	335150	335150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:335150C>T	uc002kkm.2	-	6	1623	c.1408G>A	c.(1408-1410)GGA>AGA	p.G470R		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	470	Collagen-like 1.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CCCTTCTCTCCTTTCTGTCCC	0.617													28	6					0	0	0.006320	0	0
NDC80	10403	broad.mit.edu	37	18	2590052	2590052	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:2590052C>T	uc002kli.2	+	10	1088	c.906C>T	c.(904-906)TCC>TCT	p.S302S		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	302	Interaction with the N-terminus of CDCA1.|Potential.|Interaction with NEK2 and ZWINT.|Interaction with SMC1A.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						TGAAGGCTTCCTTACAAGGAG	0.318													9	17					0	0	0.006214	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6263963	6263964	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:6263963_6263964CA>AG	uc002kmz.3	-	5	361_362	c.201_202TG>CT	c.(199-204)CCTGTT>CCCTTT	p.V68F	L3MBTL4_uc010dkt.2_Missense_Mutation_p.V68F	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	68	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				AACAGCTCAACAGGTGCTGCGA	0.446													54	12					0	0	0.004672	0	0
LAMA1	284217	broad.mit.edu	37	18	6973112	6973112	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:6973112G>A	uc002knm.2	-	47	6812	c.6718C>T	c.(6718-6720)CTG>TTG	p.L2240L	LAMA1_uc010wzj.1_Silent_p.L1716L	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2240	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTACATCCAGAACATTAGCT	0.383													66	19					0	0	0.003610	0	0
LAMA1	284217	broad.mit.edu	37	18	6983119	6983119	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:6983119C>T	uc002knm.2	-	40	5869	c.5775G>A	c.(5773-5775)AGG>AGA	p.R1925R	LAMA1_uc010wzj.1_Silent_p.R1401R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1925	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAGTCACAGTCCTGTGAGCAT	0.512													36	9					0	0	0.001951	0	0
LAMA1	284217	broad.mit.edu	37	18	6997782	6997782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:6997782C>T	uc002knm.2	-	33	4859	c.4765G>A	c.(4765-4767)GGA>AGA	p.G1589R	LAMA1_uc010wzj.1_Missense_Mutation_p.G1065R	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1589	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GACAAAATTCCATATGGGACA	0.408													39	9					0	0	0.002222	0	0
KIAA0802	23255	broad.mit.edu	37	18	8819049	8819049	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:8819049G>T	uc002knr.2	+	13	3090	c.2948G>T	c.(2947-2949)AGC>ATC	p.S983I	KIAA0802_uc002knq.2_Missense_Mutation_p.S942I|KIAA0802_uc002kns.2_Missense_Mutation_p.S323I	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	1293											0						CACCAGGGAAGCCTCCGCATG	0.572													40	5					2.26627e-22	3.30546e-22	0.007835	1	0
ANKRD12	23253	broad.mit.edu	37	18	9208710	9208710	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:9208710C>T	uc002knv.2	+	5	617	c.360C>T	c.(358-360)TCC>TCT	p.S120S	ANKRD12_uc010wzn.1_Silent_p.S120S|ANKRD12_uc002knw.2_Silent_p.S97S|ANKRD12_uc002knx.2_Silent_p.S97S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	120						nucleus				ovary(2)|central_nervous_system(1)	3						ATAAGAAATCCACACCAGTTA	0.373													29	8					0	0	0.006320	0	0
RNMT	8731	broad.mit.edu	37	18	13740181	13740181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:13740181C>T	uc002ksk.1	+	5	762	c.695C>T	c.(694-696)TCT>TTT	p.S232F	RNMT_uc002ksl.1_Missense_Mutation_p.S232F|RNMT_uc002ksm.1_Missense_Mutation_p.S232F|RNMT_uc010dlk.2_Missense_Mutation_p.S232F|RNMT_uc010xae.1_RNA	NM_003799	NP_003790	O43148	MCES_HUMAN	RNA (guanine-7-) methyltransferase	232					mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	mRNA (guanine-N7-)-methyltransferase activity|RNA binding				0						GCCGATGTTTCTGTCAAACAG	0.393													7	8					0	0	0.004482	0	0
POTEC	388468	broad.mit.edu	37	18	14542672	14542672	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:14542672G>A	uc010dln.2	-	1	928	c.474C>T	c.(472-474)ATC>ATT	p.I158I	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	158	ANK 1.									skin(3)	3						TGAGCATGACGATGAGATCCT	0.582													37	74					0	0	0.007835	0	0
MIB1	57534	broad.mit.edu	37	18	19429261	19429261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:19429261C>T	uc002ktq.2	+	17	2498	c.2498C>T	c.(2497-2499)CCA>CTA	p.P833L	MIB1_uc002ktp.2_Missense_Mutation_p.P472L	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	833	RING-type 1.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			CTTTTTGGTCCATGTGGACAT	0.393													45	105					0	0	0.003610	0	0
LAMA3	3909	broad.mit.edu	37	18	21395432	21395432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:21395432G>A	uc002kuq.2	+	17	2028	c.1942G>A	c.(1942-1944)GGA>AGA	p.G648R	LAMA3_uc002kur.2_Missense_Mutation_p.G648R	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	648	Domain V.|Laminin EGF-like 7.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTTCTGCAGGGAGATGGTGA	0.423													21	47					0	0	0.002299	0	0
LAMA3	3909	broad.mit.edu	37	18	21441693	21441693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:21441693G>A	uc002kuq.2	+	35	4592	c.4506G>A	c.(4504-4506)ATG>ATA	p.M1502I	LAMA3_uc002kur.2_Missense_Mutation_p.M1502I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1502	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCAACAGTATGGTGGCGGATC	0.577													18	14					0	0	0.006122	0	0
LAMA3	3909	broad.mit.edu	37	18	21534610	21534610	+	Nonstop_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:21534610T>C	uc002kuq.2	+	75	10086	c.10000T>C	c.(10000-10002)TAA>CAA	p.*3334Q	LAMA3_uc002kur.2_Nonstop_Mutation_p.*3278Q|LAMA3_uc002kus.3_Nonstop_Mutation_p.*1725Q|LAMA3_uc002kut.3_Nonstop_Mutation_p.*1669Q	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3334					cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCCTGACCAGTAACCCAAGCC	0.498													58	41					0	0	0.003610	0	0
HRH4	59340	broad.mit.edu	37	18	22056938	22056938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:22056938G>A	uc002kvi.2	+	3	685	c.585G>A	c.(583-585)ATG>ATA	p.M195I	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Missense_Mutation_p.M107I	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	195	Cytoplasmic (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	ATTTCAACATGAATATTTATT	0.438													30	89					0	0	0.001786	0	0
DSC3	1825	broad.mit.edu	37	18	28574254	28574254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:28574254G>A	uc002kwj.3	-	16	2733	c.2578C>T	c.(2578-2580)CCA>TCA	p.P860S	DSC3_uc002kwi.3_3'UTR	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	860	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GAACCAGCTGGAGATCCTCTT	0.388													16	38					0	0	0.007413	0	0
DSG1	1828	broad.mit.edu	37	18	28918289	28918289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:28918289G>A	uc002kwp.2	+	10	1489	c.1277G>A	c.(1276-1278)GGA>GAA	p.G426E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	426	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TATGTAATGGGAAATAATCCA	0.303													26	16					0	0	0.007291	0	0
DSG1	1828	broad.mit.edu	37	18	28934722	28934722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:28934722G>A	uc002kwp.2	+	15	2775	c.2563G>A	c.(2563-2565)GAT>AAT	p.D855N	DSG1_uc010xbp.1_Missense_Mutation_p.D214N	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	855	Desmoglein repeat 2.|Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GCACGTTCACGATAACCGACC	0.517													66	64					0	0	0.003610	0	0
DSG4	147409	broad.mit.edu	37	18	28968840	28968840	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:28968840T>A	uc002kwq.2	+	5	511	c.376T>A	c.(376-378)TAT>AAT	p.Y126N	DSG4_uc002kwr.2_Missense_Mutation_p.Y126N	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	126	Cadherin 1.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCCACAGATCTATTGCCGGGC	0.363													44	102					0	0	0.003610	0	0
DSG2	1829	broad.mit.edu	37	18	29121276	29121276	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:29121276A>G	uc002kwu.3	+	13	2188	c.2000A>G	c.(1999-2001)AAG>AGG	p.K667R		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	667	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CCTGAAGACAAGGTCAGTGGA	0.463													7	22					0	0	0.004482	0	0
B4GALT6	9331	broad.mit.edu	37	18	29206973	29206973	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:29206973G>A	uc002kwz.3	-	7	1185	c.888C>T	c.(886-888)GAC>GAT	p.D296D	B4GALT6_uc010dma.2_Silent_p.D257D|B4GALT6_uc010dmb.2_Silent_p.D257D|B4GALT6_uc002kwy.3_5'Flank	NM_004775	NP_004766	Q9UBX8	B4GT6_HUMAN	beta-1,4-galactosyltransferase 6	296	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding				0			OV - Ovarian serous cystadenocarcinoma(10;0.00791)			TGTTCCAAAGGTCATCATCTT	0.348													12	51					0	0	0.002450	0	0
FAM59A	64762	broad.mit.edu	37	18	29867085	29867085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:29867085G>A	uc002kxl.2	-	4	1531	c.1475C>T	c.(1474-1476)TCT>TTT	p.S492F	FAM59A_uc002kxk.1_Missense_Mutation_p.S492F	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	492										ovary(1)|skin(1)	2						GGGAAGAGGAGAAGTCGCACA	0.537													32	80					0	0	0.002096	0	0
ASXL3	80816	broad.mit.edu	37	18	31324044	31324044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:31324044C>T	uc010dmg.1	+	12	4287	c.4232C>T	c.(4231-4233)CCG>CTG	p.P1411L	ASXL3_uc002kxq.2_Missense_Mutation_p.P1118L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1411					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GTTGCACACCCGACCGTCGCA	0.498											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	67	59					0	0	0.003610	0	0
NOL4	8715	broad.mit.edu	37	18	31432826	31432826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:31432826G>A	uc010dmi.2	-	11	2126	c.1897C>T	c.(1897-1899)CTC>TTC	p.L633F	NOL4_uc010xbs.1_Missense_Mutation_p.L348F|NOL4_uc002kxr.3_Missense_Mutation_p.L405F|NOL4_uc010xbt.1_Missense_Mutation_p.L559F|NOL4_uc010dmh.2_Missense_Mutation_p.L495F|NOL4_uc010xbu.1_Missense_Mutation_p.L569F|NOL4_uc002kxt.3_Missense_Mutation_p.L531F	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	633						nucleolus	RNA binding			ovary(3)	3						TGTAAAATGAGATTTTCCAGT	0.408													6	28					0	0	0.003080	0	0
SETBP1	26040	broad.mit.edu	37	18	42281537	42281537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:42281537G>A	uc010dni.2	+	2	522	c.226G>A	c.(226-228)GAC>AAC	p.D76N	SETBP1_uc002lay.2_Missense_Mutation_p.D76N	NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	76						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CTCCAACGCGGACAGTGAGAA	0.547									Schinzel-Giedion_syndrome				39	34					0	0	0.001951	0	0
SETBP1	26040	broad.mit.edu	37	18	42530992	42530992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:42530992C>T	uc010dni.2	+	4	1983	c.1687C>T	c.(1687-1689)CCC>TCC	p.P563S		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	563						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GTCTGCATATCCCATCACCCC	0.522									Schinzel-Giedion_syndrome				48	131					0	0	0.003610	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224001	43224001	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:43224001C>T	uc010dnj.2	+	11	1548	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	SLC14A2_uc002lbb.2_Silent_p.F409F|SLC14A2_uc002lbe.2_Silent_p.F409F	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	409	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCATCATCTTCCTGCTCCTGA	0.542													33	94					0	0	0.003755	0	0
C18orf25	147339	broad.mit.edu	37	18	43820095	43820095	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:43820095G>A	uc002lbw.2	+	3	1219	c.840G>A	c.(838-840)CAG>CAA	p.Q280Q	C18orf25_uc002lbx.2_Intron	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	280										central_nervous_system(2)	2						TAGGCGGCCAGGACACAGGAG	0.512													17	50					0	0	0.007413	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555120	44555120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:44555120G>A	uc010xdb.1	-	1	1330	c.1094C>T	c.(1093-1095)CCC>CTC	p.P365L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	365	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTCCAGAACGGGTTCAAGAAC	0.607													14	617					0	0	0.003954	0	0
DYM	54808	broad.mit.edu	37	18	46645263	46645263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:46645263G>A	uc002ldi.1	-	15	1962	c.1597C>T	c.(1597-1599)CGA>TGA	p.R533*	DYM_uc010xdf.1_Nonsense_Mutation_p.R343*|DYM_uc002ldj.3_Nonsense_Mutation_p.R355*	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	533						Golgi apparatus					0						AACATCATTCGAATCACTTCT	0.403													8	27					0	0	0.004482	0	0
MYO5B	4645	broad.mit.edu	37	18	47566544	47566544	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:47566544G>A	uc002leb.2	-	3	567	c.279C>T	c.(277-279)TTC>TTT	p.F93F	MYO5B_uc002lec.1_Silent_p.F92F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	93	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGGACTCCAGGAAACGGACCT	0.468													77	64					0	0	0.003610	0	0
ELAC1	55520	broad.mit.edu	37	18	48510681	48510681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:48510681C>T	uc002lez.2	+	3	479	c.373C>T	c.(373-375)CCT>TCT	p.P125S	ELAC1_uc010dpe.2_Missense_Mutation_p.P125S|SMAD4_uc010xdo.1_Intron	NM_018696	NP_061166	Q9H777	RNZ1_HUMAN	elaC homolog 1	125					tRNA 3'-trailer cleavage	nucleus	endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0		Colorectal(6;0.0269)|all_epithelial(6;0.0729)		Colorectal(21;0.000943)|COAD - Colon adenocarcinoma(17;0.0398)|READ - Rectum adenocarcinoma(32;0.0894)|STAD - Stomach adenocarcinoma(97;0.18)		TGAACTGGTTCCTACAGCAGA	0.463													17	52					0	0	0.004007	0	0
DCC	1630	broad.mit.edu	37	18	50866258	50866258	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:50866258T>A	uc002lfe.1	+	15	2927	c.2340T>A	c.(2338-2340)TAT>TAA	p.Y780*	DCC_uc010xdr.1_Nonsense_Mutation_p.Y628*|DCC_uc010dpf.1_Nonsense_Mutation_p.Y435*	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	780	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCAGCGATATTATTCCATTG	0.393													10	25					0	0	0.000978	0	0
DCC	1630	broad.mit.edu	37	18	50929217	50929217	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:50929217C>T	uc002lfe.1	+	19	3476	c.2889C>T	c.(2887-2889)GTC>GTT	p.V963V	DCC_uc010xdr.1_Silent_p.V791V|DCC_uc010dpf.1_Silent_p.V598V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	963	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCGTGCCGTCATTGTGAGTT	0.512													51	130					0	0	0.003610	0	0
DCC	1630	broad.mit.edu	37	18	50961561	50961561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:50961561G>A	uc002lfe.1	+	22	3798	c.3211G>A	c.(3211-3213)GAT>AAT	p.D1071N	DCC_uc010dpf.1_Missense_Mutation_p.D706N	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1071	Extracellular (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TAATTTGATTGATAGAAGCAC	0.328													69	165					0	0	0.003610	0	0
C18orf54	162681	broad.mit.edu	37	18	51888159	51888159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:51888159C>T	uc002lfn.3	+	3	546	c.430C>T	c.(430-432)CCG>TCG	p.P144S	C18orf54_uc002lfo.3_Missense_Mutation_p.P144S	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	144						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		TTATGTTGGACCGAGTCACCG	0.418													6	29					0	0	0.003080	0	0
CCDC68	80323	broad.mit.edu	37	18	52608269	52608269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:52608269C>T	uc002lfs.2	-	4	335	c.163G>A	c.(163-165)GAA>AAA	p.E55K	CCDC68_uc002lft.2_Missense_Mutation_p.E55K	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	55										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		TGTCTTATTTCATCTTTAAAC	0.323													10	40					0	0	0.000673	0	0
TCF4	6925	broad.mit.edu	37	18	52921919	52921919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:52921919C>T	uc002lfz.2	-	15	1771	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K	TCF4_uc002lfw.3_Missense_Mutation_p.E227K|TCF4_uc010xdu.1_Missense_Mutation_p.E257K|TCF4_uc010xdv.1_Missense_Mutation_p.E257K|TCF4_uc002lfx.2_Missense_Mutation_p.E316K|TCF4_uc010xdw.1_Missense_Mutation_p.E257K|TCF4_uc002lfy.2_Missense_Mutation_p.E345K|TCF4_uc010xdx.1_Missense_Mutation_p.E363K|TCF4_uc010dph.1_Missense_Mutation_p.E387K|TCF4_uc010xdy.1_Missense_Mutation_p.E363K|TCF4_uc002lga.2_Missense_Mutation_p.E489K|TCF4_uc002lgb.1_Missense_Mutation_p.E227K|TCF4_uc010dpi.2_Missense_Mutation_p.E393K|TCF4_uc002lfv.2_Missense_Mutation_p.E170K	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	387	Leucine-zipper.				positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		AAACGATCTTCAATTCGGCTT	0.408													6	10					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	18	54814880	54814880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:54814880G>A	uc002lgm.2	+	1	545	c.337G>A	c.(337-339)GAA>AAA	p.E113K						RecName: Full=Protein FAM44C;																		AGGGAGGTCAGAAGCTGGAGT	0.483													11	33					0	0	0.001368	0	0
ALPK2	115701	broad.mit.edu	37	18	56203321	56203321	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:56203321C>T	uc002lhj.3	-	5	4312	c.4098G>A	c.(4096-4098)AAG>AAA	p.K1366K	ALPK2_uc002lhk.1_Silent_p.K697K	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1366							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TAACATTTTCCTTCCCTCCAG	0.453													62	42					0	0	0.003610	0	0
ZNF532	55205	broad.mit.edu	37	18	56587472	56587472	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:56587472G>A	uc002lho.2	+	4	2500	c.1953G>A	c.(1951-1953)AAG>AAA	p.K651K	ZNF532_uc002lhp.2_Silent_p.K649K|ZNF532_uc010xeg.1_Silent_p.K649K|ZNF532_uc002lhr.2_Silent_p.K649K|ZNF532_uc002lhs.2_Silent_p.K649K	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	651					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						ATTGTACAAAGAACCTCGTTT	0.493													12	47					0	0	0.001855	0	0
LMAN1	3998	broad.mit.edu	37	18	57021803	57021803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:57021803G>A	uc002lhz.2	-	4	519	c.487C>T	c.(487-489)CCT>TCT	p.P163S	LMAN1_uc010xek.1_Missense_Mutation_p.P163S	NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	163	Lumenal (Potential).|L-type lectin-like.				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	ACTATAGCAGGATTATTTTTC	0.284													8	50					0	0	0.003080	0	0
KIAA1468	57614	broad.mit.edu	37	18	59855179	59855179	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:59855179G>T	uc002lil.2	+	1	656	c.441G>T	c.(439-441)ATG>ATT	p.M147I	PIGN_uc002lii.3_5'Flank|PIGN_uc002lij.3_5'Flank|KIAA1468_uc002lik.1_Missense_Mutation_p.M147I|KIAA1468_uc010xel.1_Missense_Mutation_p.M147I	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	147							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CGCCGGGGATGGGGGCGCCAG	0.672											OREG0025032	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	9					0.00116845	0.00167919	0.001168	1	0
PHLPP1	23239	broad.mit.edu	37	18	60646130	60646130	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:60646130C>T	uc002lis.2	+	18	3262	c.3084C>T	c.(3082-3084)TTC>TTT	p.F1028F		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	1540					apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						CTAGCGCCTTCTCCGACAACG	0.642													3	8					0	0	0.000248	0	0
SERPINB5	5268	broad.mit.edu	37	18	61170800	61170800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:61170800G>A	uc002liz.3	+	7	1115	c.973G>A	c.(973-975)GAA>AAA	p.E325K		NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	325					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						AGTGTGCTTAGAAATAACTGA	0.443													14	32					0	0	0.001855	0	0
SERPINB4	6318	broad.mit.edu	37	18	61306491	61306491	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:61306491C>T	uc002ljf.2	-	7	782	c.696G>A	c.(694-696)CTG>CTA	p.L232L	SERPINB4_uc002lje.2_Silent_p.L211L|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	232					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATGGTATTTCCAGGACCTTGG	0.398													21	51					0	0	0.001523	0	0
SERPINB3	6317	broad.mit.edu	37	18	61323108	61323108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:61323108C>T	uc002lji.2	-	8	1100	c.956G>A	c.(955-957)GGG>GAG	p.G319E	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.G267E	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	319					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						ACCGCGGCTCCCGGTCATGCC	0.547													22	78					0	0	0.002299	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324626	61324626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:61324626G>A	uc002ljg.2	-	5	516	c.490C>T	c.(490-492)CCT>TCT	p.P164S	SERPINB3_uc002lji.2_Missense_Mutation_p.P164S|SERPINB3_uc010dqa.2_Missense_Mutation_p.P164S			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	164					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TTACCTTCAGGAATTAGGTTT	0.353													24	79					0	0	0.006320	0	0
SERPINB10	5273	broad.mit.edu	37	18	61582839	61582839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:61582839C>T	uc010xev.1	+	2	185	c.95C>T	c.(94-96)TCC>TTC	p.S32F	SERPINB2_uc002ljp.1_Missense_Mutation_p.S173F|SERPINB2_uc002ljq.1_Missense_Mutation_p.S146F|SERPINB10_uc010xew.1_Missense_Mutation_p.S32F	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	32						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				TTCTTTTCTTCCTGGAGCATC	0.458													18	64					0	0	0.007413	0	0
NETO1	81832	broad.mit.edu	37	18	70417313	70417313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:70417313C>T	uc002lkw.2	-	9	1809	c.1525G>A	c.(1525-1527)GAT>AAT	p.D509N	NETO1_uc002lkx.1_Missense_Mutation_p.D508N|NETO1_uc002lky.1_Missense_Mutation_p.D509N	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	509	Cytoplasmic (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		ACGGCTTTATCGTGTCTGGAC	0.438													26	16					0	0	0.002096	0	0
NETO1	81832	broad.mit.edu	37	18	70423345	70423345	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:70423345G>T	uc002lkw.2	-	8	1190	c.906C>A	c.(904-906)AAC>AAA	p.N302K	NETO1_uc002lkx.1_Missense_Mutation_p.N301K|NETO1_uc002lky.1_Missense_Mutation_p.N302K	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	302	LDL-receptor class A.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TAATACACATGTTACTATGGC	0.363													16	51					9.16793e-09	1.32912e-08	0.004990	1	0
NETO1	81832	broad.mit.edu	37	18	70526247	70526248	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:70526247_70526248CC>TT	uc002lkw.2	-	4	566_567	c.282_283GG>AA	c.(280-285)TGGGAG>TGAAAG	p.94_95WE>*K	NETO1_uc002lkx.1_Nonsense_Mutation_p.93_94WE>*K|NETO1_uc002lky.1_Nonsense_Mutation_p.94_95WE>*K|NETO1_uc002lkz.2_Nonsense_Mutation_p.93_94WE>*K	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	94_95	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		AATTTGCACTCCCAAGACGGTT	0.386													15	44					0	0	0.004672	0	0
SALL3	27164	broad.mit.edu	37	18	76754300	76754300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:76754300C>T	uc002lmt.2	+	2	2309	c.2309C>T	c.(2308-2310)CCG>CTG	p.P770L	SALL3_uc010dra.2_Missense_Mutation_p.P377L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	770					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CCCAACACGCCGCTGCCGGAG	0.627													6	27					0	0	0.001984	0	0
KCNG2	26251	broad.mit.edu	37	18	77624193	77624193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr18:77624193G>A	uc010xfl.1	+	1	526	c.526G>A	c.(526-528)GGC>AGC	p.G176S		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	176	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		GGGGCTGGCGGGCAAGCTCTT	0.458													9	19					0	0	0.006214	0	0
PRSSL1	400668	broad.mit.edu	37	19	686997	686997	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:686997G>A	uc002lpl.1	-	4	604	c.573C>T	c.(571-573)TCC>TCT	p.S191S	PRSSL1_uc010xfs.1_Silent_p.S190S	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	191	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCCCTTCCAGGAGCTGTTGC	0.642													9	38					0	0	0.004482	0	0
MED16	10025	broad.mit.edu	37	19	868157	868158	+	Missense_Mutation	DNP	GG	AA	AA	rs142254775		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:868157_868158GG>AA	uc002lqd.1	-	16	2728_2729	c.2577_2578CC>TT	c.(2575-2580)CACCAC>CATTAC	p.H860Y	MED16_uc010drw.1_3'UTR|MED16_uc002lqe.2_3'UTR|MED16_uc002lqf.2_3'UTR	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	860					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGGAGAGTGGTGTGTGGACT	0.688													9	9					0	0	0.004672	0	0
C19orf22	91300	broad.mit.edu	37	19	899633	899633	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:899633G>A	uc002lqg.2	-	6	683	c.615C>T	c.(613-615)CCC>CCT	p.P205P	C19orf22_uc002lqh.2_Silent_p.P184P|C19orf22_uc002lqi.2_Missense_Mutation_p.P205S|C19orf22_uc002lqj.2_Silent_p.P83P	NM_138774	NP_620129	Q96D70	CS022_HUMAN	hypothetical protein LOC91300	205	R3H.					nucleus	nucleic acid binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACACGGCCTGGGGGGACACGG	0.692													6	13					0	0	0.001168	0	0
ARID3A	1820	broad.mit.edu	37	19	971923	971923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:971923C>T	uc002lql.2	+	9	1930	c.1640C>T	c.(1639-1641)CCC>CTC	p.P547L		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT- like)	547	Important for cytoplasmic localization (By similarity).					cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTCTGCTCCCAACAAAGGA	0.542													24	63					0	0	0.005443	0	0
CNN2	1265	broad.mit.edu	37	19	1037643	1037643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:1037643G>A	uc002lqu.2	+	7	1037	c.674G>A	c.(673-675)GGG>GAG	p.G225E	ABCA7_uc002lqw.3_5'Flank|CNN2_uc002lqv.2_Missense_Mutation_p.G186E|CNN2_uc010xgb.1_Missense_Mutation_p.G214E|CNN2_uc010xgc.1_Missense_Mutation_p.G246E|ABCA7_uc010dsa.2_5'Flank	NM_004368	NP_004359	Q99439	CNN2_HUMAN	calponin 2 isoform a	225	Calponin-like 2.				actomyosin structure organization|cellular response to mechanical stimulus|regulation of actin filament-based process	cell-cell junction|stress fiber	actin binding|calmodulin binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGGCTCCCGGGACCCGGCGG	0.537													84	63					0	0	0.003610	0	0
ABCA7	10347	broad.mit.edu	37	19	1056159	1056159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:1056159C>T	uc002lqw.3	+	32	4564	c.4333C>T	c.(4333-4335)CCC>TCC	p.P1445S	ABCA7_uc002lqy.2_5'Flank|ABCA7_uc010dsc.2_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1445	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTGCTGAGTCCCCTGCCTGG	0.672													14	27					0	0	0.001855	0	0
REEP6	92840	broad.mit.edu	37	19	1496322	1496322	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:1496322G>A	uc002ltc.2	+	4	491	c.387G>A	c.(385-387)TGG>TGA	p.W129*		NM_138393	NP_612402	Q96HR9	REEP6_HUMAN	receptor accessory protein 6	129						integral to membrane					0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGGCCCTGGAACGGGGCTC	0.662													26	31					0	0	0.001786	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785507	1785507	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:1785507G>A	uc002ltw.2	-	26	3588	c.3354C>T	c.(3352-3354)GTC>GTT	p.V1118V	ATP8B3_uc002ltv.2_Silent_p.V1081V|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1118	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCACCACGACCGCAAAGG	0.632													19	10					0	0	0.001882	0	0
SCAMP4	113178	broad.mit.edu	37	19	1917763	1917763	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:1917763C>T	uc002luj.2	+	3	185	c.78C>T	c.(76-78)TCC>TCT	p.S26S	SCAMP4_uc002lui.1_Silent_p.S26S|SCAMP4_uc002luk.2_Silent_p.S26S|SCAMP4_uc010dss.2_5'UTR	NM_079834	NP_524558	Q969E2	SCAM4_HUMAN	secretory carrier membrane protein 4	26	Cytoplasmic (Potential).				protein transport	integral to membrane					0		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGAACTTCTCCGACGAGATCC	0.597													12	26					0	0	0.000978	0	0
SPPL2B	56928	broad.mit.edu	37	19	2334633	2334633	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:2334633C>T	uc002lvs.2	+	2	179	c.99C>T	c.(97-99)GTC>GTT	p.V33V	SPPL2B_uc010dsw.1_Silent_p.V5V|SPPL2B_uc010dsy.1_Silent_p.V5V|SPPL2B_uc010dsz.1_Silent_p.V33V|SPPL2B_uc002lvr.2_Silent_p.V33V	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2	33	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCACGTGGTCTCCCAGGCCG	0.652													12	8					0	0	0.004007	0	0
SPPL2B	56928	broad.mit.edu	37	19	2345250	2345250	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:2345250G>A	uc002lvs.2	+	14	1357	c.1277_splice	c.e14-1	p.G426_splice	SPPL2B_uc002lvr.2_Splice_Site_p.G426_splice	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2							Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCCCCCAGGGCTGCTGGT	0.677													8	20					0	0	0.003080	0	0
SGTA	6449	broad.mit.edu	37	19	2762546	2762546	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:2762546G>A	uc002lwi.1	-	7	741	c.594C>T	c.(592-594)AAC>AAT	p.N198N		NM_003021	NP_003012	O43765	SGTA_HUMAN	small glutamine-rich tetratricopeptide	198					interspecies interaction between organisms	cytoplasm	protein binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTATCTTGAGGTTGGACTTGT	0.642													19	65					0	0	0.001523	0	0
TLE6	79816	broad.mit.edu	37	19	2991957	2991957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:2991957C>T	uc002lwu.2	+	13	1392	c.992C>T	c.(991-993)CCT>CTT	p.P331L	TLE6_uc002lwt.2_Missense_Mutation_p.P454L|TLE6_uc010dtg.2_Missense_Mutation_p.P454L|TLE6_uc002lwv.2_Missense_Mutation_p.P235L	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	331	WD 4.				regulation of transcription, DNA-dependent	nucleus		p.P331H(1)		ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCATGAAACCTCTGGAGTAC	0.537													18	30					0	0	0.007413	0	0
GNA15	2769	broad.mit.edu	37	19	3155833	3155833	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:3155833C>T	uc002lxf.2	+	5	885	c.627C>T	c.(625-627)GTC>GTT	p.V209V		NM_002068	NP_002059	P30679	GNA15_HUMAN	guanine nucleotide binding protein (G protein),	209	GTP (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.04e-05)|OV - Ovarian serous cystadenocarcinoma(105;5.08e-113)|Epithelial(107;6.19e-111)|all cancers(105;6.19e-103)|BRCA - Breast invasive adenocarcinoma(158;0.00145)|STAD - Stomach adenocarcinoma(1328;0.184)		TCGTGGACGTCGGGGGCCAGA	0.577													16	33					0	0	0.006122	0	0
MATK	4145	broad.mit.edu	37	19	3778381	3778381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:3778381G>A	uc002lyt.2	-	14	1724	c.1324C>T	c.(1324-1326)CGC>TGC	p.R442C	MATK_uc002lyv.2_Missense_Mutation_p.R443C|MATK_uc002lyu.2_Missense_Mutation_p.R401C|MATK_uc010dtq.2_Missense_Mutation_p.R441C	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	442	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTTCCATGCGGTACCCCTTC	0.697													13	43					0	0	0.004990	0	0
CREB3L3	84699	broad.mit.edu	37	19	4153747	4153747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4153747G>A	uc002lzl.2	+	1	119	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CREB3L3_uc002lzm.2_5'UTR|CREB3L3_uc010xib.1_5'UTR|CREB3L3_uc010xic.1_5'UTR	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	1	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGGACCCATGAATACGGATT	0.572													15	5					0	0	0.006122	0	0
CREB3L3	84699	broad.mit.edu	37	19	4154950	4154950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4154950C>T	uc002lzl.2	+	2	198	c.82C>T	c.(82-84)CTC>TTC	p.L28F	CREB3L3_uc002lzm.2_Missense_Mutation_p.L19F|CREB3L3_uc010xib.1_Missense_Mutation_p.L19F|CREB3L3_uc010xic.1_Missense_Mutation_p.L19F	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	28	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCTGGATCTCCTGTTTGA	0.627													25	85					0	0	0.005443	0	0
ANKRD24	170961	broad.mit.edu	37	19	4210288	4210288	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4210288C>T	uc010dtt.1	+	13	1254	c.978C>T	c.(976-978)ATC>ATT	p.I326I	ANKRD24_uc002lzs.2_Silent_p.I297I|ANKRD24_uc002lzt.2_Silent_p.I298I	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	326	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		ATGAGGAGATCGTGAGGCTGC	0.632													3	3					0	0	0.000602	0	0
CHAF1A	10036	broad.mit.edu	37	19	4433242	4433242	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4433242C>T	uc002mal.2	+	13	2479	c.2379C>T	c.(2377-2379)CCC>CCT	p.P793P		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	793	Binds to p60.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCCATCCCCTCTAAGTCCC	0.647								Chromatin_Structure					30	55					0	0	0.001786	0	0
HDGFRP2	84717	broad.mit.edu	37	19	4475533	4475533	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4475533C>T	uc002mao.2	+	3	334	c.241C>T	c.(241-243)CTG>TTG	p.L81L	HDGFRP2_uc002map.2_Silent_p.L81L|HDGFRP2_uc010dtz.1_RNA	NM_001001520	NP_001001520	Q7Z4V5	HDGR2_HUMAN	hepatoma-derived growth factor-related protein 2	81					transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						CAATGAAGGGCTGTGGGAGAT	0.577													6	44					0	0	0.001168	0	0
SEMA6B	10501	broad.mit.edu	37	19	4550191	4550191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4550191C>T	uc010duc.1	-	11	1253	c.1215G>A	c.(1213-1215)ATG>ATA	p.M405I	SEMA6B_uc010dud.2_Missense_Mutation_p.M405I|SEMA6B_uc010xih.1_Missense_Mutation_p.M405I	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	405	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCCTCGTCCATCAGAGGGT	0.672													27	23					0	0	0.005443	0	0
SEMA6B	10501	broad.mit.edu	37	19	4554460	4554460	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4554460C>T	uc010duc.1	-	8	749	c.711G>A	c.(709-711)TGG>TGA	p.W237*	SEMA6B_uc010dud.2_Nonsense_Mutation_p.W237*|SEMA6B_uc010xih.1_Nonsense_Mutation_p.W237*	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	237	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CATGGCTGCCCCACTCCACCG	0.557													23	32					0	0	0.003954	0	0
DPP9	91039	broad.mit.edu	37	19	4679940	4679940	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4679940G>A	uc002mba.2	-	21	2751	c.2493C>T	c.(2491-2493)ATC>ATT	p.I831I		NM_139159	NP_631898	Q86TI2	DPP9_HUMAN	dipeptidylpeptidase 9	802					proteolysis	cytosol|membrane	aminopeptidase activity|serine-type peptidase activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00884)		AGCCGTGGAGGATAAGCAAGC	0.478													12	6					0	0	0.002450	0	0
ARRDC5	645432	broad.mit.edu	37	19	4891445	4891445	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:4891445C>T	uc002mbm.2	-	3	642	c.642G>A	c.(640-642)CAG>CAA	p.Q214Q		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	214					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		ATTTGCTGGTCTGGTTGTTGA	0.557													8	33					0	0	0.004482	0	0
PTPRS	5802	broad.mit.edu	37	19	5225815	5225815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:5225815G>A	uc002mbv.2	-	17	2651	c.2417C>T	c.(2416-2418)TCC>TTC	p.S806F	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Missense_Mutation_p.S784F|PTPRS_uc002mbx.2_Intron|PTPRS_uc002mby.2_Intron	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	806	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TACCGTGATGGAGTACGCGGT	0.647													5	20					0	0	0.000602	0	0
HSD11B1L	374875	broad.mit.edu	37	19	5687364	5687364	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:5687364G>A	uc002mck.2	+	6	730	c.480G>A	c.(478-480)CTG>CTA	p.L160L	HSD11B1L_uc002mcu.2_Silent_p.L26L|HSD11B1L_uc002mcl.2_Silent_p.L79L|HSD11B1L_uc002mcm.2_Silent_p.L26L|HSD11B1L_uc002mcq.2_Silent_p.L26L|HSD11B1L_uc002mcr.2_Silent_p.L79L|HSD11B1L_uc002mcs.2_Silent_p.L214L|HSD11B1L_uc010dug.2_Silent_p.L207L|HSD11B1L_uc002mct.2_Silent_p.L26L|HSD11B1L_uc002mco.2_Silent_p.L73L|HSD11B1L_uc002mcn.2_Silent_p.L160L|HSD11B1L_uc002mcp.2_Silent_p.L26L|RPL36_uc002mcv.2_5'Flank|RPL36_uc002mcw.2_5'Flank	NM_198533	NP_940935	Q7Z5J1	DHI1L_HUMAN	short-chain dehydrogenase/reductase 10 isoform	160						extracellular region	binding|oxidoreductase activity				0						AGGGCTCCCTGGTGGTGGTGT	0.682													9	21					0	0	0.000978	0	0
TMEM146	257062	broad.mit.edu	37	19	5778497	5778497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:5778497C>T	uc002mda.2	+	22	2268	c.2207C>T	c.(2206-2208)TCC>TTC	p.S736F		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	736	Helical; (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATCCTGGGGTCCGTTTGGCTG	0.572													20	41					0	0	0.001523	0	0
RFX2	5990	broad.mit.edu	37	19	5997073	5997073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:5997073C>T	uc002meb.2	-	16	2280	c.2011G>A	c.(2011-2013)GAG>AAG	p.E671K	RFX2_uc002mec.2_Missense_Mutation_p.E646K	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	671					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GTCCTCACCTCTCCCATCACA	0.672													26	26					0	0	0.007291	0	0
ACER1	125981	broad.mit.edu	37	19	6312490	6312490	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:6312490G>A	uc002mel.2	-	2	192	c.114C>T	c.(112-114)TTC>TTT	p.F38F		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	38	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GCCCGAAGATGAAGAAGGGGA	0.557													23	79					0	0	0.002780	0	0
SLC25A23	79085	broad.mit.edu	37	19	6454035	6454035	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:6454035G>T	uc002mex.1	-	7	1002	c.860C>A	c.(859-861)TCC>TAC	p.S287Y	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Missense_Mutation_p.S104Y	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	287	Helical; Name=3; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						ACCAGCCAGGGAGCCAGCCAC	0.642													9	42					5.16669e-11	7.50359e-11	0.000978	1	0
DENND1C	79958	broad.mit.edu	37	19	6477258	6477258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:6477258G>A	uc002mfe.2	-	8	576	c.484C>T	c.(484-486)CCC>TCC	p.P162S	DENND1C_uc002mfb.2_5'Flank|DENND1C_uc002mfc.2_5'Flank|DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Missense_Mutation_p.P118S	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	162	DENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						GTAGGGGGGGGGATACCCTGC	0.672													16	10					0	0	0.006122	0	0
TRIP10	9322	broad.mit.edu	37	19	6744928	6744928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:6744928C>T	uc002mfs.2	+	9	973	c.907C>T	c.(907-909)CCC>TCC	p.P303S	TRIP10_uc010dux.1_Missense_Mutation_p.P303S|TRIP10_uc002mfr.2_Missense_Mutation_p.P303S|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Missense_Mutation_p.P122S	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	303	Interaction with CDC42.|Interaction with PDE6G (By similarity).				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						TCTGGGCACCCCCTCGGATGG	0.652													35	24					0	0	0.002445	0	0
INSR	3643	broad.mit.edu	37	19	7152894	7152894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7152894C>T	uc002mgd.1	-	10	2183	c.2074G>A	c.(2074-2076)GAA>AAA	p.E692K	INSR_uc002mge.1_Missense_Mutation_p.E692K|INSR_uc002mgf.2_Missense_Mutation_p.E692K	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	692	Fibronectin type-III 1.				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGAGAATCTTCAGACTCGAAT	0.517													94	274					0	0	0.003610	0	0
ARHGEF18	23370	broad.mit.edu	37	19	7505331	7505331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7505331C>T	uc002mgi.2	+	1	758	c.505C>T	c.(505-507)CCA>TCA	p.P169S	ARHGEF18_uc010xjm.1_Missense_Mutation_p.P11S|ARHGEF18_uc002mgh.2_Missense_Mutation_p.P11S	NM_001130955	NP_001124427	Q6ZSZ5	ARHGI_HUMAN	Rho/Rac guanine nucleotide exchange factor 18	169					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell shape|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1		Renal(5;0.0902)				GGGTCCCCAGCCAACACCGAG	0.682													11	31					0	0	0.001368	0	0
MCOLN1	57192	broad.mit.edu	37	19	7595183	7595183	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7595183C>T	uc002mgo.2	+	12	1496	c.1371C>T	c.(1369-1371)CTC>CTT	p.L457L	MCOLN1_uc002mgp.2_Silent_p.L422L	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	457					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						TCCGCTCACTCTCCATGGTGT	0.647													34	121					0	0	0.004878	0	0
MAP2K7	5609	broad.mit.edu	37	19	7976345	7976345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7976345C>T	uc002mit.2	+	9	1026	c.961C>T	c.(961-963)CCC>TCC	p.P321S	MAP2K7_uc002miv.2_Missense_Mutation_p.P328S|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_Missense_Mutation_p.P328S|MAP2K7_uc010dvv.2_Missense_Mutation_p.P196S	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	321	Protein kinase.				activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	AGGACAGTTTCCCTACAAGAA	0.602													23	11					0	0	0.006320	0	0
TIMM44	10469	broad.mit.edu	37	19	7997560	7997560	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7997560G>A	uc002miz.2	-	9	941	c.939C>T	c.(937-939)GAC>GAT	p.D313D	TIMM44_uc002mja.2_Silent_p.D53D|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	313					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TCAGAAACCGGTCCTTGTCAA	0.637													17	41					0	0	0.007413	0	0
TIMM44	10469	broad.mit.edu	37	19	7998811	7998811	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7998811G>A	uc002miz.2	-	6	623	c.621C>T	c.(619-621)CTC>CTT	p.L207L	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	207					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TTCTCTTCCGGAGTCGCTGGG	0.617													12	40					0	0	0.001368	0	0
FBN3	84467	broad.mit.edu	37	19	8194188	8194188	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8194188C>T	uc002mjf.2	-	16	2127	c.2106G>A	c.(2104-2106)CGG>CGA	p.R702R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	702	EGF-like 8; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGTAGCTGCCCCGAAGGTTCT	0.612													13	38					0	0	0.001855	0	0
RAB11B	9230	broad.mit.edu	37	19	8464857	8464857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8464857C>T	uc002mju.3	+	2	247	c.151C>T	c.(151-153)CGC>TGC	p.R51C	RAB11B_uc010xkd.1_Missense_Mutation_p.R51C	NM_004218	NP_004209	Q15907	RB11B_HUMAN	RAB11B, member RAS oncogene family	51					cell cycle|protein transport|small GTPase mediated signal transduction	plasma membrane	GDP binding|GTP binding|GTPase activity				0						GTTCGCCACCCGCAGCATCCA	0.662													12	29					0	0	0.001855	0	0
MARCH2	51257	broad.mit.edu	37	19	8486881	8486881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8486881C>T	uc002mjv.2	+	3	598	c.157C>T	c.(157-159)CGT>TGT	p.R53C	MARCH2_uc002mjw.2_Missense_Mutation_p.R53C|MARCH2_uc002mjx.2_Missense_Mutation_p.R53C	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	53					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CACCGTCATCCGTGCCTTGGA	0.617													20	41					0	0	0.003330	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8660772	8660772	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8660772G>A	uc002mkj.1	-	12	1627	c.1353C>T	c.(1351-1353)CTC>CTT	p.L451L	ADAMTS10_uc002mkk.1_Silent_p.L83L	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	451	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TGTTCAGGCAGAGCCCCAGGC	0.607													41	92					0	0	0.006999	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8665993	8665993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8665993C>T	uc002mkj.1	-	6	903	c.629G>A	c.(628-630)CGG>CAG	p.R210Q	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	210					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CTTCAAGGTCCGCAGCCACCA	0.637													9	25					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	8995964	8995964	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:8995964G>A	uc002mkp.2	-	62	41481	c.41277C>T	c.(41275-41277)TCC>TCT	p.S13759S	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.S576S|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCTGGTGGTGGACACAGAGC	0.532													16	29					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9048748	9048748	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9048748G>A	uc002mkp.2	-	5	33087	c.32883C>T	c.(32881-32883)ACC>ACT	p.T10961T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10963	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGAAGGTGTGGTCTCTGGTT	0.498													23	53					0	0	0.003954	0	0
MUC16	94025	broad.mit.edu	37	19	9049655	9049655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9049655G>A	uc002mkp.2	-	5	32180	c.31976C>T	c.(31975-31977)TCG>TTG	p.S10659L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10661	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCTGTCCCCGAAATAGTGAC	0.498													17	44					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	9056574	9056574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9056574G>A	uc002mkp.2	-	3	31076	c.30872C>T	c.(30871-30873)ACC>ATC	p.T10291I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10293	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACTCCAGTGGTGGCAAATGA	0.512													24	55					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9064631	9064631	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9064631G>A	uc002mkp.2	-	3	23019	c.22815C>T	c.(22813-22815)CCC>CCT	p.P7605P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7607	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGAAATCCTGGGGATGGTTC	0.483													16	39					0	0	0.004007	0	0
MUC16	94025	broad.mit.edu	37	19	9069548	9069548	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9069548C>T	uc002mkp.2	-	3	18102	c.17898G>A	c.(17896-17898)AGG>AGA	p.R5966R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5968	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTATGGTCTTCCTCCTGCCAG	0.488													25	42					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9070500	9070500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9070500G>A	uc002mkp.2	-	3	17150	c.16946C>T	c.(16945-16947)TCA>TTA	p.S5649L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5651	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCTCTGGTGATGTGGAGGA	0.522													7	22					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													46	32					0	0	0.002222	0	0
MUC16	94025	broad.mit.edu	37	19	9074217	9074217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9074217G>A	uc002mkp.2	-	3	13433	c.13229C>T	c.(13228-13230)CCT>CTT	p.P4410L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4412	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCAAGTAAGGCATGGTTGA	0.473													46	122					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9075687	9075687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9075687G>A	uc002mkp.2	-	3	11963	c.11759C>T	c.(11758-11760)TCA>TTA	p.S3920L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTTGGGGATGAAGTCGTCCC	0.468													5	19					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9076809	9076809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9076809C>T	uc002mkp.2	-	3	10841	c.10637G>A	c.(10636-10638)GGA>GAA	p.G3546E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3547	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGTTGGTTCCCATGGTGGT	0.542													22	111					0	0	0.002780	0	0
MUC16	94025	broad.mit.edu	37	19	9076840	9076840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9076840G>A	uc002mkp.2	-	3	10810	c.10606C>T	c.(10606-10608)CCA>TCA	p.P3536S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3537	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGATACCTGGAGTAGGAGCT	0.532													96	44					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9080501	9080501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9080501C>T	uc002mkp.2	-	2	9734	c.9530G>A	c.(9529-9531)GGA>GAA	p.G3177E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3178	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.A3175fs*111(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGTGGAATTTCCTTGTGCTGC	0.493													39	84					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9085046	9085046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9085046C>T	uc002mkp.2	-	1	6973	c.6769G>A	c.(6769-6771)GAT>AAT	p.D2257N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2257	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTTCAGTATCAGGGGAGGGG	0.463													17	14					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9089642	9089642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9089642G>A	uc002mkp.2	-	1	2377	c.2173C>T	c.(2173-2175)CCT>TCT	p.P725S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	725	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACAACAGAGGAATGCTGGTG	0.498													22	63					0	0	0.001882	0	0
OR1M1	125963	broad.mit.edu	37	19	9204289	9204289	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9204289C>T	uc010xkj.1	+	1	369	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						ATGACCGGTTCGTGGCCATCT	0.552													43	44					0	0	0.007835	0	0
OR7D4	125958	broad.mit.edu	37	19	9325456	9325456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9325456C>T	uc002mla.1	-	1	58	c.58G>A	c.(58-60)GAT>AAT	p.D20N		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGTTCAGGATCATCTGAGAGT	0.507													32	40					0	0	0.003271	0	0
ZNF560	147741	broad.mit.edu	37	19	9578989	9578989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9578989C>T	uc002mlp.1	-	10	844	c.634G>A	c.(634-636)GAA>AAA	p.E212K	ZNF560_uc010dwr.1_Missense_Mutation_p.E106K	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TCATAGAGTTCCTCTCCATTT	0.363													14	33					0	0	0.002450	0	0
ZNF121	7675	broad.mit.edu	37	19	9677277	9677278	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9677277_9677278GG>AA	uc010xkp.1	-	4	743_744	c.511_512CC>TT	c.(511-513)CCC>TTC	p.P171F	ZNF121_uc010dwt.2_Missense_Mutation_p.P171F|ZNF121_uc010xkq.1_Missense_Mutation_p.P171F	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACATTCATAGGGTTTCTCCCCA	0.366													35	18					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	19	9801144	9801144	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9801144G>A	uc010xkx.1	-	3	1346	c.723C>T	c.(721-723)TCC>TCT	p.S241S						RecName: Full=Zinc finger protein 562;																		TAAGGGTTGAGGATCCATTGA	0.418													33	19					0	0	0.002096	0	0
OLFM2	93145	broad.mit.edu	37	19	9968153	9968153	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9968153C>T	uc002mmp.2	-	4	394	c.366G>A	c.(364-366)CTG>CTA	p.L122L	OLFM2_uc002mmo.2_Silent_p.L44L	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	122						extracellular region				large_intestine(1)|skin(1)	2						TCCTGTCCTTCAGCTCCTGTG	0.557													9	24					0	0	0.006214	0	0
COL5A3	50509	broad.mit.edu	37	19	10071421	10071421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10071421C>T	uc002mmq.1	-	66	5083	c.4997G>A	c.(4996-4998)AGC>AAC	p.S1666N		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1666	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGCGGAGTGGCTGTAGTCACC	0.597													11	47					0	0	0.000673	0	0
COL5A3	50509	broad.mit.edu	37	19	10092762	10092762	+	Silent	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10092762G>T	uc002mmq.1	-	32	2525	c.2439C>A	c.(2437-2439)CCC>CCA	p.P813P		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	813	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCTCTCCTATGGGTCCCAGGG	0.542													13	38					9.31168e-06	1.34624e-05	0.001855	1	0
ICAM3	3385	broad.mit.edu	37	19	10446489	10446489	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10446489C>T	uc002mob.2	-	3	562	c.507G>A	c.(505-507)GAG>GAA	p.E169E	RAVER1_uc002moa.2_5'Flank|ICAM3_uc010dxd.1_Silent_p.E92E|ICAM3_uc010xlf.1_Silent_p.E92E	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	169	Extracellular (Potential).|Ig-like C2-type 2.				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			CCTCCGCTGGCTCCTCCACTG	0.687													6	10					0	0	0.001984	0	0
PDE4A	5141	broad.mit.edu	37	19	10578042	10578042	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10578042C>T	uc002moj.2	+	15	2514	c.2406C>T	c.(2404-2406)TTC>TTT	p.F802F	PDE4A_uc002mok.2_Silent_p.F776F|PDE4A_uc002mol.2_Silent_p.F741F|PDE4A_uc002mom.2_Silent_p.F563F|PDE4A_uc002mon.2_Silent_p.F257F|PDE4A_uc002moo.2_3'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	802					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	GGGAGGAATTCGTGGTTGCTG	0.622													52	48					0	0	0.003610	0	0
KEAP1	9817	broad.mit.edu	37	19	10610578	10610578	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10610578G>A	uc002moq.1	-	2	288	c.132C>T	c.(130-132)CCC>CCT	p.P44P	KEAP1_uc002mor.1_Silent_p.P44P	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	44					regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CATGCTGGGAGGGCGTCACCT	0.642													44	49					0	0	0.003610	0	0
AP1M2	10053	broad.mit.edu	37	19	10687881	10687881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:10687881G>A	uc002mpc.2	-	9	1124	c.1040C>T	c.(1039-1041)TCT>TTT	p.S347F	AP1M2_uc002mpd.2_Missense_Mutation_p.S349F	NM_005498	NP_005489	Q9Y6Q5	AP1M2_HUMAN	adaptor-related protein complex 1, mu 2 subunit	347	MHD.				cellular membrane organization|post-Golgi vesicle-mediated transport|protein targeting|regulation of defense response to virus by virus|vesicle targeting|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(2)	2			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			TACCGGGAAAGACTTAATACT	0.587													4	9					0	0	0.000248	0	0
LDLR	3949	broad.mit.edu	37	19	11227540	11227540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:11227540C>T	uc002mqk.3	+	12	1879	c.1711C>T	c.(1711-1713)CTC>TTC	p.L571F	LDLR_uc010xlk.1_Missense_Mutation_p.L571F|LDLR_uc010xll.1_Missense_Mutation_p.L530F|LDLR_uc010xlm.1_Missense_Mutation_p.L424F|LDLR_uc010xln.1_Missense_Mutation_p.L444F|LDLR_uc010xlo.1_Missense_Mutation_p.L403F	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	571	LDL-receptor class B 4.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	TCTAGATCTCCTCAGTGGCCG	0.577													82	188					0	0	0.003610	0	0
ZNF878	729747	broad.mit.edu	37	19	12155424	12155424	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:12155424G>A	uc002mta.1	-	5	933	c.933C>T	c.(931-933)TTC>TTT	p.F311F		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	264	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TGGGACAATTGAAGGCTTTAT	0.408													34	21					0	0	0.002445	0	0
ZNF844	284391	broad.mit.edu	37	19	12186404	12186404	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:12186404C>T	uc002mtb.2	+	4	612	c.469C>T	c.(469-471)CAA>TAA	p.Q157*	ZNF844_uc010dym.1_5'UTR	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	157	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCCCTCCTTTCAAATGCAAGA	0.408													9	15					0	0	0.004482	0	0
ZNF709	163051	broad.mit.edu	37	19	12575350	12575350	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:12575350G>A	uc002mtv.3	-	4	1547	c.1386C>T	c.(1384-1386)TCC>TCT	p.S462S	ZNF709_uc002mtw.3_Silent_p.S430S|ZNF709_uc002mtx.3_Silent_p.S462S	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	462	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCATTCGAAAGGAACTGGAAC	0.398													36	85					0	0	0.004878	0	0
NFIX	4784	broad.mit.edu	37	19	13201181	13201181	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:13201181C>T	uc010xmx.1	+	10	1548	c.1495C>T	c.(1495-1497)CTG>TTG	p.L499L	NFIX_uc002mwd.2_Silent_p.F441F|NFIX_uc002mwe.2_Silent_p.F433F|NFIX_uc002mwf.2_Silent_p.F403F|NFIX_uc002mwg.1_Silent_p.F440F			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	491					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			CGGCAACTTTCTGAACATCCC	0.622													23	85					0	0	0.001512	0	0
TRMT1	55621	broad.mit.edu	37	19	13227068	13227068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:13227068G>A	uc002mwj.2	-	1	396	c.146C>T	c.(145-147)CCA>CTA	p.P49L	NACC1_uc002mwm.2_5'Flank|TRMT1_uc002mwk.2_Missense_Mutation_p.P49L|TRMT1_uc002mwl.3_Missense_Mutation_p.P49L|TRMT1_uc010xmz.1_5'UTR	NM_017722	NP_060192	Q9NXH9	TRM1_HUMAN	tRNA methyltransferase 1 isoform 1	49							RNA binding|tRNA (guanine-N2-)-methyltransferase activity|zinc ion binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(19;6.08e-22)	GBM - Glioblastoma multiforme(1328;0.0356)		GACTTCACGTGGACGTTCTTC	0.587													19	59					0	0	0.002780	0	0
CACNA1A	773	broad.mit.edu	37	19	13325129	13325129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:13325129C>T	uc010dze.2	-	40	6097	c.5861G>A	c.(5860-5862)GGG>GAG	p.G1954E	CACNA1A_uc010xnd.1_Missense_Mutation_p.G659E|CACNA1A_uc002mwx.3_Missense_Mutation_p.G659E|CACNA1A_uc010dzc.2_Missense_Mutation_p.G1479E|CACNA1A_uc002mwy.3_Missense_Mutation_p.G1953E|CACNA1A_uc002mwv.3_Missense_Mutation_p.G470E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1954	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GTAGATCTTCCCCACGGTGAG	0.632													9	11					0	0	0.000673	0	0
CACNA1A	773	broad.mit.edu	37	19	13565990	13565990	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:13565990C>T	uc010dze.2	-	2	566	c.330G>A	c.(328-330)GCG>GCA	p.A110A	CACNA1A_uc002mwy.3_Silent_p.A110A	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	110	Helical; Name=S1 of repeat I; (Potential).|I.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CGATGCAATTCGCTATGATGG	0.473													45	147					0	0	0.003610	0	0
SLC1A6	6511	broad.mit.edu	37	19	15079196	15079196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15079196C>T	uc002naa.1	-	3	475	c.467G>A	c.(466-468)GGG>GAG	p.G156E	SLC1A6_uc010dzu.1_Missense_Mutation_p.G156E|SLC1A6_uc010xod.1_Intron|SLC1A6_uc002nab.2_Missense_Mutation_p.G156E|SLC1A6_uc002nac.2_Missense_Mutation_p.G156E|SLC1A6_uc002nad.1_Missense_Mutation_p.G156E	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	156	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	GGAGCCCTTCCCGGGATGGAT	0.577													15	10					0	0	0.004990	0	0
CCDC105	126402	broad.mit.edu	37	19	15131400	15131400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15131400C>T	uc002nae.2	+	3	902	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	268					microtubule cytoskeleton organization	microtubule				ovary(1)	1						GTGAACCTCTCCCGAGCCCCC	0.592													20	12					0	0	0.001523	0	0
NOTCH3	4854	broad.mit.edu	37	19	15290951	15290951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15290951G>A	uc002nan.2	-	20	3335	c.3259C>T	c.(3259-3261)CCC>TCC	p.P1087S	NOTCH3_uc002nao.1_Missense_Mutation_p.P1035S	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1087	Extracellular (Potential).|EGF-like 28.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GCCAAGCAGGGGTCCACCTCC	0.652													35	27					0	0	0.005524	0	0
BRD4	23476	broad.mit.edu	37	19	15367916	15367916	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15367916G>A	uc002nar.2	-	8	1632	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S	BRD4_uc002nas.2_Silent_p.S470S|BRD4_uc002nat.3_Silent_p.S470S|BRD4_uc002nau.3_Silent_p.S470S	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	470					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GCACTGCCGGGGAGGACACGG	0.622			T	NUT|C15orf55	lethal midline carcinoma of young people								12	21					0	0	0.001368	0	0
RASAL3	64926	broad.mit.edu	37	19	15564295	15564295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15564295C>T	uc002nbe.2	-	15	2379	c.2293G>A	c.(2293-2295)GAG>AAG	p.E765K	RASAL3_uc002nbd.2_Missense_Mutation_p.E105K|RASAL3_uc010eaa.1_Missense_Mutation_p.E253K	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	765					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						CCGGGCTTCTCCCCTGCGGAG	0.662													3	8					0	0	0.004672	0	0
CYP4F8	11283	broad.mit.edu	37	19	15726483	15726483	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15726483G>A	uc002nbi.2	+	2	120	c.56G>A	c.(55-57)TGG>TAG	p.W19*	CYP4F8_uc010xoi.1_Nonsense_Mutation_p.W19*|CYP4F8_uc010xoj.1_5'UTR	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	19	Helical; (Potential).				prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GCATCCCCGTGGCTGCTCCTG	0.682													16	18					0	0	0.003163	0	0
CYP4F8	11283	broad.mit.edu	37	19	15730456	15730456	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15730456C>T	uc002nbi.2	+	5	472	c.408C>T	c.(406-408)CTC>CTT	p.L136L	CYP4F8_uc010xoi.1_3'UTR|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	136					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GGGATGGGCTCTTGTTAAGTG	0.522													5	19					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	19	15871644	15871644	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:15871644G>A	uc002nbo.2	-	9		c.1363C>T								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GCAGAGAAGGGAATAAAAGCC	0.567													5	54					0	0	0.000602	0	0
EPS15L1	58513	broad.mit.edu	37	19	16547762	16547763	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:16547762_16547763GG>AA	uc002ndz.1	-	6	363_364	c.357_358CC>TT	c.(355-360)GCCCAC>GCTTAC	p.H120Y	EPS15L1_uc002ndx.2_Missense_Mutation_p.H120Y|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.H10Y|EPS15L1_uc010xpf.1_Missense_Mutation_p.H23Y|EPS15L1_uc002nea.1_Missense_Mutation_p.H120Y|EPS15L1_uc010eah.1_Missense_Mutation_p.H120Y|EPS15L1_uc002neb.1_5'Flank|EPS15L1_uc002nec.1_Missense_Mutation_p.H120Y	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	120					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						ACAGCCCAGTGGGCCTCTGCAG	0.5													33	31					0	0	0.004672	0	0
C19orf44	84167	broad.mit.edu	37	19	16611668	16611668	+	Missense_Mutation	SNP	C	T	T	rs146198206		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:16611668C>T	uc002neh.1	+	2	138	c.65C>T	c.(64-66)TCC>TTC	p.S22F	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Missense_Mutation_p.S22F|C19orf44_uc002neg.2_Missense_Mutation_p.S22F|C19orf44_uc010eai.1_RNA	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167	22											0						AGTGATGTTTCCTTGGAAGAT	0.408													27	86					0	0	0.001512	0	0
NWD1	284434	broad.mit.edu	37	19	16918402	16918402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:16918402G>A	uc002neu.3	+	18	4164	c.3742G>A	c.(3742-3744)GAA>AAA	p.E1248K	NWD1_uc002net.3_Missense_Mutation_p.E1113K|NWD1_uc002nev.3_Missense_Mutation_p.E1042K			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1248	WD 10.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGCAGGCGAGGAACAAGATTC	0.483													25	78					0	0	0.001512	0	0
NWD1	284434	broad.mit.edu	37	19	16918626	16918626	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:16918626C>T	uc002neu.3	+	18	4388	c.3966C>T	c.(3964-3966)GTC>GTT	p.V1322V	NWD1_uc002net.3_Silent_p.V1187V|NWD1_uc002nev.3_Silent_p.V1116V			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1322							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ACAACATCGTCCTGGTGCTGG	0.607													21	49					0	0	0.001882	0	0
CPAMD8	27151	broad.mit.edu	37	19	17038874	17038874	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17038874C>T	uc002nfb.2	-	25	3488	c.3456G>A	c.(3454-3456)CTG>CTA	p.L1152L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1105						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GTGGGACCCCCAGGGTGAAGG	0.627													31	20					0	0	0.004289	0	0
CPAMD8	27151	broad.mit.edu	37	19	17058029	17058029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17058029C>T	uc002nfb.2	-	21	2690	c.2658G>A	c.(2656-2658)ATG>ATA	p.M886I		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	839						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCGAGAGCTTCATGTACACCT	0.602													33	106					0	0	0.004289	0	0
C19orf62	29086	broad.mit.edu	37	19	17387350	17387350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17387350C>T	uc002nfu.2	+	7	734	c.616C>T	c.(616-618)CCC>TCC	p.P206S	C19orf62_uc010xpl.1_Missense_Mutation_p.P131S|C19orf62_uc002nfv.2_Missense_Mutation_p.P206S|C19orf62_uc010ean.2_RNA|C19orf62_uc002nfw.2_Missense_Mutation_p.P206S	NM_014173	NP_054892	Q9NWV8	BABA1_HUMAN	mediator of Rap80 interactions and targeting 40	206	VWFA-like.				chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of DNA repair|protein K63-linked deubiquitination|response to ionizing radiation	BRCA1-A complex|BRISC complex|cytoplasm	protein binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						GCAGACGATTCCCCCGCCATA	0.622													3	9					0	0	0.000248	0	0
ABHD8	79575	broad.mit.edu	37	19	17411956	17411956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17411956G>A	uc002ngb.3	-	2	710	c.470C>T	c.(469-471)ACC>ATC	p.T157I		NM_024527	NP_078803	Q96I13	ABHD8_HUMAN	abhydrolase domain containing 8	157							hydrolase activity				0						AATATGGATGGTCCTCTTGGG	0.478													39	29					0	0	0.006230	0	0
UNC13A	23025	broad.mit.edu	37	19	17759754	17759754	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17759754G>A	uc002nhd.2	-	15	1827	c.1827C>T	c.(1825-1827)GCC>GCT	p.A609A		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	521					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TGGAGGCCAAGGCCGAGGTGA	0.607													4	4					0	0	0.001168	0	0
RPL18A	6142	broad.mit.edu	37	19	17972995	17972996	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:17972995_17972996CC>TT	uc002nhp.1	+	3	326_327	c.291_292CC>TT	c.(289-294)TACCGG>TATTGG	p.R98W	SNORA68_uc002nhq.1_5'Flank	NM_000980	NP_000971	Q02543	RL18A_HUMAN	ribosomal protein L18a	98					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0						ACCGGGAATACCGGGACCTGAC	0.614													25	75					0	0	0.004672	0	0
SLC5A5	6528	broad.mit.edu	37	19	18004536	18004536	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18004536C>T	uc002nhr.3	+	15	2129	c.1782C>T	c.(1780-1782)CTC>CTT	p.L594L		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	594	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGAAGAACTCCCCACTGGAA	0.582													12	17					0	0	0.001855	0	0
ARRDC2	27106	broad.mit.edu	37	19	18120704	18120704	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18120704G>A	uc002nhv.2	+	5	848	c.705G>A	c.(703-705)CAG>CAA	p.Q235Q	ARRDC2_uc002nhu.2_Silent_p.Q230Q	NM_015683	NP_056498	Q8TBH0	ARRD2_HUMAN	arrestin domain containing 2 isoform 1	235										pancreas(1)	1						CCCGAAAGCAGAAACGGGCAG	0.706													20	32					0	0	0.007413	0	0
IL12RB1	3594	broad.mit.edu	37	19	18180520	18180520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18180520G>A	uc002nhw.1	-	10	1089	c.1025C>T	c.(1024-1026)CCA>CTA	p.P342L	IL12RB1_uc010xqb.1_Missense_Mutation_p.P342L|IL12RB1_uc002nhx.1_Missense_Mutation_p.P382L	NM_005535	NP_005526	P42701	I12R1_HUMAN	interleukin 12 receptor, beta 1 isoform 1	342	Extracellular (Potential).|Fibronectin type-III 4.				cellular response to interferon-gamma|interleukin-12-mediated signaling pathway|positive regulation of activated T cell proliferation|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response	interleukin-12 receptor complex|interleukin-23 receptor complex	cytokine receptor activity			pancreas(1)	1						CAGAGCCACTGGTTCTGGAAG	0.587													29	64					0	0	0.002096	0	0
KIAA1683	80726	broad.mit.edu	37	19	18368082	18368082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18368082G>A	uc002nin.2	-	4	3667	c.3451C>T	c.(3451-3453)CAT>TAT	p.H1151Y	PDE4C_uc002nil.3_5'Flank|KIAA1683_uc010ebn.2_Missense_Mutation_p.H1338Y|KIAA1683_uc010xqe.1_Missense_Mutation_p.H1105Y|KIAA1683_uc010xqf.1_RNA	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	1151	IQ 6.					mitochondrion				ovary(2)	2						CTCCGGGTATGGTGGCCTCGC	0.612													45	15					0	0	0.003610	0	0
KIAA1683	80726	broad.mit.edu	37	19	18376886	18376886	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18376886C>T	uc002nin.2	-	3	1680	c.1464G>A	c.(1462-1464)GTG>GTA	p.V488V	KIAA1683_uc010ebn.2_Silent_p.V488V|KIAA1683_uc010xqe.1_Silent_p.V442V	NM_025249	NP_079525	Q9H0B3	K1683_HUMAN	KIAA1683 isoform b	488						mitochondrion				ovary(2)	2						AGGGCTTGGTCACCCCAACTG	0.592													24	45					0	0	0.006320	0	0
GDF15	9518	broad.mit.edu	37	19	18499380	18499380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18499380G>A	uc002niv.2	+	2	594	c.562G>A	c.(562-564)GCC>ACC	p.A188T		NM_004864	NP_004855	Q99988	GDF15_HUMAN	growth differentiation factor 15	188					cell-cell signaling|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			central_nervous_system(1)	1						GCGGCCGCAAGCCGCCAGGGG	0.731											OREG0025363	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	8					0	0	0.004672	0	0
CRLF1	9244	broad.mit.edu	37	19	18707840	18707840	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:18707840G>A	uc010ebt.1	-	5	911	c.717C>T	c.(715-717)CCC>CCT	p.P239P		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	239	Fibronectin type-III 2.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						CGTGCACGTCGGGCGGGGGGT	0.672													12	17					0	0	0.001368	0	0
SFRS14	10147	broad.mit.edu	37	19	19112431	19112431	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:19112431G>A	uc002nkx.2	-	8	3128	c.2982C>T	c.(2980-2982)TCC>TCT	p.S994S	SFRS14_uc002nkz.1_Silent_p.S1008S|SFRS14_uc002nla.1_Silent_p.S994S|SFRS14_uc002nlb.2_Silent_p.S994S|SFRS14_uc010xqk.1_Silent_p.S763S	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	994					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CCTTCTTTTTGGACATGGGAC	0.433													14	60					0	0	0.002450	0	0
CILP2	148113	broad.mit.edu	37	19	19655067	19655067	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:19655067C>T	uc002nmv.3	+	8	1798	c.1713C>T	c.(1711-1713)CCC>CCT	p.P571P	CILP2_uc002nmw.3_Silent_p.P577P	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	571						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						ACACGATCCCCCTGGGCGAGC	0.632													25	87					0	0	0.004656	0	0
ZNF93	81931	broad.mit.edu	37	19	20045439	20045439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:20045439C>T	uc002non.2	+	4	1786	c.1675C>T	c.(1675-1677)CAT>TAT	p.H559Y		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	559	C2H2-type 15.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						TAAGATACTTCATACTGGAGA	0.363													9	42					0	0	0.004482	0	0
ZNF90	7643	broad.mit.edu	37	19	20236104	20236104	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:20236104C>T	uc002nos.1	+	5		c.780C>T			ZNF90_uc002not.1_RNA			Q03938	ZNF90_HUMAN	Synthetic construct DNA, clone: pF1KB9685, Homo sapiens ZNF90 gene for zinc finger protein 90, without stop codon, in Flexi system.							Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TTTATGCTATCCGTCAGTCCA	0.522													8	22					0	0	0.004482	0	0
ZNF737	100129842	broad.mit.edu	37	19	20727911	20727911	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:20727911C>T	uc002npa.2	-	4	1278	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	366					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGTAGGGTTTCTCTCCACTAT	0.403													22	32					0	0	0.002299	0	0
ZNF708	7562	broad.mit.edu	37	19	21477443	21477443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:21477443G>A	uc002npq.1	-	4	523	c.325C>T	c.(325-327)CAG>TAG	p.Q109*	ZNF708_uc002npr.1_Nonsense_Mutation_p.Q45*|ZNF708_uc010ecs.1_Nonsense_Mutation_p.Q45*	NM_021269	NP_067092	P17019	ZN708_HUMAN	zinc finger protein 708	109					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(4)|skin(2)	6						CAGCCTTTCTGATATCCACAT	0.398													27	69					0	0	0.002445	0	0
ZNF208	7757	broad.mit.edu	37	19	22157589	22157589	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:22157589G>A	uc002nqp.2	-	4	396	c.247C>T	c.(247-249)CAA>TAA	p.Q83*	ZNF208_uc002nqo.1_Nonsense_Mutation_p.Q83*|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CAAAGATCTTGAGCAAAATGA	0.294													9	28					0	0	0.006214	0	0
ZNF99	7652	broad.mit.edu	37	19	22939917	22939917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:22939917C>T	uc010xrh.1	-	6	2414	c.2414G>A	c.(2413-2415)GGA>GAA	p.G805E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCCACATTCTCCACATTTGTA	0.383													23	54					0	0	0.003954	0	0
ZNF675	171392	broad.mit.edu	37	19	23836932	23836932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:23836932G>A	uc002nri.2	-	4	985	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	268	C2H2-type 5.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AAGGTGTGAGGACTGGTTAAA	0.353													10	52					0	0	0.000978	0	0
ZNF681	148213	broad.mit.edu	37	19	23926753	23926753	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:23926753G>A	uc002nrk.3	-	4	1741	c.1599C>T	c.(1597-1599)CCC>CCT	p.P533P	ZNF681_uc002nrl.3_Silent_p.P464P|ZNF681_uc002nrj.3_Silent_p.P464P	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	533					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CACATGTGTAGGGTTTCTCTC	0.378													10	41					0	0	0.000978	0	0
ZNF254	9534	broad.mit.edu	37	19	24309664	24309664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:24309664C>T	uc002nru.2	+	4	996	c.862C>T	c.(862-864)CAT>TAT	p.H288Y	ZNF254_uc010xrk.1_Missense_Mutation_p.H203Y	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	288	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				TAAGATAATTCATACTGGAGA	0.353													7	29					0	0	0.001984	0	0
ZNF536	9745	broad.mit.edu	37	19	30934682	30934682	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:30934682C>T	uc002nsu.1	+	2	351	c.213C>T	c.(211-213)CCC>CCT	p.P71P	ZNF536_uc010edd.1_Silent_p.P71P	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCCACGTGCCCATGAGCGGCC	0.682													19	16					0	0	0.001523	0	0
ZNF536	9745	broad.mit.edu	37	19	30935299	30935299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:30935299C>T	uc002nsu.1	+	2	968	c.830C>T	c.(829-831)ACC>ATC	p.T277I	ZNF536_uc010edd.1_Missense_Mutation_p.T277I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	277	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TTCCGCTGTACCTTCTGCAAG	0.667													13	13					0	0	0.001855	0	0
ZNF536	9745	broad.mit.edu	37	19	30936114	30936114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:30936114G>A	uc002nsu.1	+	2	1783	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	ZNF536_uc010edd.1_Missense_Mutation_p.E549K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	549					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCGCAACCACGAAGACACTTT	0.552													21	70					0	0	0.002780	0	0
ZNF536	9745	broad.mit.edu	37	19	31039452	31039452	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:31039452C>T	uc002nsu.1	+	4	3064	c.2926C>T	c.(2926-2928)CTG>TTG	p.L976L	ZNF536_uc010edd.1_Silent_p.L976L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	976					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GTATGAACCCCTGGACTTGTC	0.577													53	63					0	0	0.003610	0	0
C19orf40	91442	broad.mit.edu	37	19	33464112	33464112	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:33464112A>G	uc002nud.3	+	2	128	c.10A>G	c.(10-12)AAC>GAC	p.N4D	CCDC123_uc002nty.2_5'Flank|CCDC123_uc010edg.2_5'Flank|CCDC123_uc002ntz.1_5'Flank|CCDC123_uc002nua.2_5'Flank|CCDC123_uc002nuc.1_5'Flank	NM_152266	NP_689479	Q9BTP7	FAP24_HUMAN	Fanconi anemia-associated protein, 24 kDa	4					DNA repair	Fanconi anaemia nuclear complex	chromatin binding|DNA binding|protein binding				0	Esophageal squamous(110;0.137)					CATGGAAAAGAACCCCCCTGA	0.607								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks					21	58					0	0	0.002299	0	0
GPI	2821	broad.mit.edu	37	19	34856261	34856261	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:34856261C>T	uc002nvg.1	+	1	193	c.90C>T	c.(88-90)TTC>TTT	p.F30F	GPI_uc002nvf.2_Silent_p.F69F|GPI_uc010xrv.1_Silent_p.F69F|GPI_uc010xrw.1_Silent_p.F30F|GPI_uc010edl.1_Silent_p.F30F|GPI_uc002nvh.1_Nonsense_Mutation_p.R16*	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	30					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					GCCGCCTCTTCGATGCCAACA	0.522													5	23					0	0	0.001168	0	0
GPI	2821	broad.mit.edu	37	19	34890117	34890117	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:34890117C>T	uc002nvg.1	+	15	1378	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L	GPI_uc002nvf.2_Silent_p.L464L|GPI_uc010xrv.1_Silent_p.L436L|GPI_uc010xrw.1_Silent_p.L397L|GPI_uc010edl.1_Silent_p.L425L|GPI_uc002nvi.1_Silent_p.L88L	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	425					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					ATCAGATCCTCCTGGCCAACT	0.597													12	14					0	0	0.001855	0	0
UBA2	10054	broad.mit.edu	37	19	34949692	34949692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:34949692C>T	uc002nvk.2	+	13	1334	c.1264C>T	c.(1264-1266)CCA>TCA	p.P422S	UBA2_uc010xrx.1_Missense_Mutation_p.P295S|UBA2_uc002nvl.2_Missense_Mutation_p.P326S	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	422					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			GAATAAACAACCAAACCCAAG	0.423													18	63					0	0	0.001523	0	0
ZNF599	148103	broad.mit.edu	37	19	35250816	35250816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:35250816G>A	uc010edn.1	-	4	1278	c.890C>T	c.(889-891)TCT>TTT	p.S297F	ZNF599_uc010edm.1_Missense_Mutation_p.S260F	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	297	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			CTGGATAAAAGAAGAGCGGTG	0.438													53	44					0	0	0.003610	0	0
CD22	933	broad.mit.edu	37	19	35823659	35823659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:35823659G>A	uc010edt.2	+	3	321	c.244G>A	c.(244-246)GAT>AAT	p.D82N	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.D82N|CD22_uc010edv.2_Missense_Mutation_p.D82N|CD22_uc002nzb.3_Missense_Mutation_p.D82N	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	82	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	AAGCACAAAGGATGGGAAGGT	0.473													19	39					0	0	0.001216	0	0
CD22	933	broad.mit.edu	37	19	35835957	35835957	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:35835957G>A	uc010edt.2	+	11	2213	c.2136G>A	c.(2134-2136)TGG>TGA	p.W712*	CD22_uc010xst.1_Nonsense_Mutation_p.W540*|CD22_uc010edu.2_Nonsense_Mutation_p.W624*|CD22_uc010edv.2_Nonsense_Mutation_p.W712*|CD22_uc002nzb.3_Nonsense_Mutation_p.W535*|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	712	Cytoplasmic (Potential).				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TTCTCAGTTGGAAGAGGACAC	0.493													35	90					0	0	0.003214	0	0
FFAR1	2864	broad.mit.edu	37	19	35842894	35842894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:35842894C>T	uc002nzc.2	+	1	450	c.440C>T	c.(439-441)CCA>CTA	p.P147L		NM_005303	NP_005294	O14842	FFAR1_HUMAN	free fatty acid receptor 1	147	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;4.58e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.67e-19)|all cancers(14;2.01e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)		Icosapent(DB00159)	TTGGAGGCTCCAGGAGGCTGG	0.672													29	22					0	0	0.002096	0	0
FFAR3	2865	broad.mit.edu	37	19	35849881	35849881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:35849881C>T	uc002nzd.2	+	2	164	c.89C>T	c.(88-90)CCC>CTC	p.P30L	FFAR3_uc010xsu.1_RNA	NM_005304	NP_005295	O14843	FFAR3_HUMAN	free fatty acid receptor 3	30	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding				0	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;1.29e-19)|OV - Ovarian serous cystadenocarcinoma(14;4.63e-18)|all cancers(14;5.19e-17)|LUSC - Lung squamous cell carcinoma(66;0.0221)			GTGGGGCTCCCCCTCAACCTG	0.647													37	49					0	0	0.003610	0	0
WDR62	284403	broad.mit.edu	37	19	36591691	36591691	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:36591691C>T	uc002odc.2	+	23	2872	c.2781C>T	c.(2779-2781)TTC>TTT	p.F927F	WDR62_uc002odd.2_Silent_p.F927F	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	927					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ACCCCTCCTTCCTGCCCCAGC	0.602													21	78					0	0	0.001882	0	0
ZFP14	57677	broad.mit.edu	37	19	36831728	36831728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:36831728G>A	uc002odx.1	-	4	1093	c.1000C>T	c.(1000-1002)CAT>TAT	p.H334Y	ZFP14_uc010xtd.1_Missense_Mutation_p.H335Y|ZFP14_uc010eex.1_Missense_Mutation_p.H334Y	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	334	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					TCACCAAAATGAATTTTCTGA	0.403													11	51					0	0	0.000978	0	0
ZNF567	163081	broad.mit.edu	37	19	37210633	37210633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:37210633C>T	uc010xtl.1	+	6	1229	c.1007C>T	c.(1006-1008)TCG>TTG	p.S336L	ZNF567_uc002oeo.1_Missense_Mutation_p.S336L|ZNF567_uc010xtk.1_Missense_Mutation_p.S336L|ZNF567_uc002oep.3_Missense_Mutation_p.S305L|ZNF567_uc002oeq.1_Missense_Mutation_p.S305L	NM_152603	NP_689816	Q8N184	ZN567_HUMAN	zinc finger protein 567	336					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			GGGGAGAAATCGTATGAATGT	0.458													22	11					0	0	0.001882	0	0
ZNF345	25850	broad.mit.edu	37	19	37367907	37367907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:37367907G>A	uc002oex.2	+	3	553	c.175G>A	c.(175-177)GAG>AAG	p.E59K	ZNF345_uc002oey.3_Missense_Mutation_p.E59K|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	59					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCATACTGATGAGAAACTCCT	0.393													19	46					0	0	0.002780	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677213	37677213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:37677213G>A	uc002ofq.2	-	5	1480	c.1226C>T	c.(1225-1227)TCG>TTG	p.S409L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.S223L	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCATATATACGATTTTTCTCC	0.423													15	61					0	0	0.004007	0	0
ZNF569	148266	broad.mit.edu	37	19	37904471	37904471	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:37904471G>A	uc002ogi.2	-	6	1647	c.1089C>T	c.(1087-1089)TTC>TTT	p.F363F	ZNF569_uc002ogh.2_Silent_p.F204F|ZNF569_uc002ogj.2_Silent_p.F387F	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	363	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAAACTGAGAGAAGGCTTTAC	0.383													21	59					0	0	0.002780	0	0
ZNF793	390927	broad.mit.edu	37	19	38028479	38028479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:38028479G>A	uc010efm.2	+	8	1361	c.919G>A	c.(919-921)GGA>AGA	p.G307R	ZNF793_uc010xts.1_Missense_Mutation_p.G307R|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	307					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AACACACACAGGAGAGAGACC	0.458													7	29					0	0	0.001984	0	0
ZNF607	84775	broad.mit.edu	37	19	38189499	38189499	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:38189499C>T	uc002ohc.1	-	5	2129	c.1533G>A	c.(1531-1533)GGG>GGA	p.G511G	ZNF607_uc002ohb.1_Silent_p.G510G	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	511	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TAAAGGCCTTCCCACATTCCT	0.403													21	57					0	0	0.001882	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903659	38903659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:38903659G>A	uc002oir.2	-	12	1661	c.1447C>T	c.(1447-1449)CGA>TGA	p.R483*	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Nonsense_Mutation_p.R414*|RASGRP4_uc010xub.1_Nonsense_Mutation_p.R449*|RASGRP4_uc010xuc.1_Nonsense_Mutation_p.R391*|RASGRP4_uc010xud.1_Nonsense_Mutation_p.R386*|RASGRP4_uc010xue.1_Nonsense_Mutation_p.R294*|RASGRP4_uc010egb.2_Nonsense_Mutation_p.R469*	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	483	EF-hand.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			ATTGTTCCTCGGCCTTCAGGG	0.542													20	63					0	0	0.001216	0	0
RYR1	6261	broad.mit.edu	37	19	39077171	39077171	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:39077171C>T	uc002oit.2	+	105	15106	c.14976C>T	c.(14974-14976)TTC>TTT	p.F4992F	RYR1_uc002oiu.2_Silent_p.F4987F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4992					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCAGGTTTTTCCTGATGTATT	0.378													16	48					0	0	0.001216	0	0
LGALS4	3960	broad.mit.edu	37	19	39294164	39294164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:39294164G>A	uc002ojg.2	-	7	782	c.568C>T	c.(568-570)CCG>TCG	p.P190S	LGALS4_uc010xuj.1_3'UTR	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	190					cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			AGCCATACCGGGTTGAAGGTT	0.537													20	51					0	0	0.003330	0	0
ECH1	1891	broad.mit.edu	37	19	39306353	39306353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:39306353G>A	uc002oji.2	-	10	972	c.887C>T	c.(886-888)TCC>TTC	p.S296F	LGALS4_uc002ojg.2_5'Flank|LGALS4_uc010xuj.1_5'Flank|ECH1_uc002ojh.2_Missense_Mutation_p.S176F	NM_001398	NP_001389	Q13011	ECH1_HUMAN	peroxisomal enoyl-coenzyme A hydratase-like	296					fatty acid beta-oxidation|generation of precursor metabolites and energy	mitochondrion|peroxisome	enoyl-CoA hydratase activity|isomerase activity|protein binding			ovary(1)	1	all_cancers(60;9.36e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CATGTTCCAGGACGCCTGGTA	0.557													11	26					0	0	0.001368	0	0
PAPL	390928	broad.mit.edu	37	19	39600743	39600743	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:39600743G>A	uc002oki.2	+	13	1576	c.1302G>A	c.(1300-1302)CGG>CGA	p.R434R	PAPL_uc010egl.2_3'UTR	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	434						extracellular region	acid phosphatase activity|metal ion binding				0						TGTTTGGCCGGAGGATGTACC	0.522											OREG0025457	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	81					0	0	0.002836	0	0
PAK4	10298	broad.mit.edu	37	19	39660353	39660353	+	Missense_Mutation	SNP	G	T	T	rs148292608		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:39660353G>T	uc002okj.1	+	4	621	c.160G>T	c.(160-162)GTC>TTC	p.V54F	PAK4_uc002okl.1_Missense_Mutation_p.V54F|PAK4_uc002okn.1_Missense_Mutation_p.V54F|PAK4_uc002okm.1_Missense_Mutation_p.V54F|PAK4_uc002oko.1_Missense_Mutation_p.V54F|PAK4_uc002okp.1_Missense_Mutation_p.V54F	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	54	Linker.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			CAAGCCCCTCGTCGACCCCGC	0.711													13	15					1.5739e-10	2.2852e-10	0.004007	1	0
LOC400696	400696	broad.mit.edu	37	19	40172138	40172138	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40172138C>T	uc010xve.1	+	2	127	c.81C>T	c.(79-81)ATC>ATT	p.I27I	LOC400696_uc010xvf.1_RNA	NM_207646	NP_997529			hypothetical protein LOC400696												0						GGACACCGATCATCCCTTTCG	0.532													5	31					0	0	0.000602	0	0
LGALS14	56891	broad.mit.edu	37	19	40197293	40197293	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40197293G>A	uc002omg.2	+	2	295	c.72G>A	c.(70-72)GGG>GGA	p.G24G	LGALS14_uc002omf.2_Silent_p.G53G	NM_020129	NP_064514	Q8TCE9	PPL13_HUMAN	lectin, galactoside-binding, soluble, 14 isoform	24	Galectin.					nucleus	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;4.39e-06)|all_lung(34;6.76e-08)|Lung NSC(34;7.98e-08)|Ovarian(47;0.06)	Myeloproliferative disorder(2;0.0741)	Epithelial(26;1.08e-24)|OV - Ovarian serous cystadenocarcinoma(5;1.92e-24)|all cancers(26;4.12e-22)			TAATCACAGGGACACCGATCC	0.493													54	138					0	0	0.003610	0	0
CLC	1178	broad.mit.edu	37	19	40224958	40224958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40224958C>T	uc002omh.2	-	3	344	c.268G>A	c.(268-270)GAA>AAA	p.E90K		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	90	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		ATGCTCAGTTCAAATTCTTGG	0.562													28	54					0	0	0.006320	0	0
FCGBP	8857	broad.mit.edu	37	19	40363962	40363962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40363962C>T	uc002omp.3	-	31	14688	c.14680G>A	c.(14680-14682)GAC>AAC	p.D4894N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4894	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ATGGAAAAGTCCTCGTCCCCA	0.582													10	47					0	0	0.006214	0	0
FCGBP	8857	broad.mit.edu	37	19	40368657	40368657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40368657G>A	uc002omp.3	-	28	12699	c.12691C>T	c.(12691-12693)CCT>TCT	p.P4231S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4231	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTGCCATTAGGGAAGACCTGG	0.642													42	129					0	0	0.003610	0	0
FCGBP	8857	broad.mit.edu	37	19	40420125	40420125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40420125C>T	uc002omp.3	-	6	2877	c.2869G>A	c.(2869-2871)GAT>AAT	p.D957N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	957	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACCTGCCCATCTGCTGCTTGG	0.567													28	16					0	0	0.001786	0	0
FCGBP	8857	broad.mit.edu	37	19	40424184	40424184	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40424184G>A	uc002omp.3	-	4	2027	c.2019C>T	c.(2017-2019)CTC>CTT	p.L673L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	673	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCATGCCACAGAGTCGGTCGC	0.612													47	151					0	0	0.003610	0	0
PRX	57716	broad.mit.edu	37	19	40902667	40902667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:40902667G>A	uc002onr.2	-	7	1861	c.1592C>T	c.(1591-1593)CCA>CTA	p.P531L	PRX_uc002onq.2_Missense_Mutation_p.P392L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	531	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGGCACCTTTGGGAGTTTCAT	0.562													86	76					0	0	0.003610	0	0
SHKBP1	92799	broad.mit.edu	37	19	41086712	41086712	+	Silent	SNP	C	T	T	rs141174643		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41086712C>T	uc002oob.2	+	9	763	c.714C>T	c.(712-714)ATC>ATT	p.I238I	SHKBP1_uc002ooc.2_Silent_p.I238I|SHKBP1_uc002ood.2_Silent_p.I238I|SHKBP1_uc010xvl.1_Silent_p.I161I|SHKBP1_uc002ooe.2_Silent_p.I75I|SHKBP1_uc002oof.2_Silent_p.I75I|SHKBP1_uc010xvm.1_Silent_p.I75I|SHKBP1_uc010xvn.1_Silent_p.I116I	NM_138392	NP_612401	Q8TBC3	SHKB1_HUMAN	SH3KBP1 binding protein 1	238	WD 1.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|pancreas(1)	2			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACTGGCCCATCGAACGACTGG	0.627													22	54					0	0	0.001523	0	0
ADCK4	79934	broad.mit.edu	37	19	41208578	41208578	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41208578G>A	uc002oor.2	-	10	1122	c.820C>T	c.(820-822)CTG>TTG	p.L274L	ADCK4_uc002oop.1_5'Flank|ADCK4_uc002ooq.1_Silent_p.L233L	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	274	Protein kinase.					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			AAGGCCTGCAGGCTCTGCTCG	0.642											OREG0025476	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	47					0	0	0.001216	0	0
ADCK4	79934	broad.mit.edu	37	19	41219975	41219975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41219975C>T	uc002oor.2	-	4	588	c.286G>A	c.(286-288)GGG>AGG	p.G96R	ADCK4_uc002ooq.1_Missense_Mutation_p.G96R|ADCK4_uc002oos.2_Missense_Mutation_p.G96R	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	96	Helical; (Potential).					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			CACCTACCCCCAAAGTTGGCC	0.537													27	70					0	0	0.007291	0	0
ITPKC	80271	broad.mit.edu	37	19	41235202	41235203	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41235202_41235203CC>TT	uc002oot.2	+	3	1384_1385	c.1351_1352CC>TT	c.(1351-1353)CCT>TTT	p.P451F		NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	451						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CCCGCTGCGACCTTTCGTGCCT	0.559													16	35					0	0	0.004672	0	0
ITPKC	80271	broad.mit.edu	37	19	41245435	41245435	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41245435C>T	uc002oot.2	+	7	2055	c.2022C>T	c.(2020-2022)ATC>ATT	p.I674I		NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	674						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ACAACATGATCTGCCTCCTGC	0.642													7	9					0	0	0.003080	0	0
CYP2A7	1549	broad.mit.edu	37	19	41383128	41383128	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41383128C>T	uc002opm.2	-	7	1670	c.1128G>A	c.(1126-1128)AAG>AAA	p.K376K	CYP2A7_uc002opo.2_Silent_p.K376K|CYP2A7_uc002opn.2_Silent_p.K325K	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	376						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ACTTGGTGTCCTTTTTAACCC	0.542													24	83					0	0	0.004656	0	0
CYP2B6	1555	broad.mit.edu	37	19	41518385	41518385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41518385C>T	uc002opr.1	+	7	1154	c.1147C>T	c.(1147-1149)CCC>TCC	p.P383S	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.P183S	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	383					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	GTACATCATCCCCAAGGTAAG	0.512													14	41					0	0	0.002450	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600319	41600319	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:41600319G>A	uc002opt.2	+	7	1152	c.1143G>A	c.(1141-1143)CGG>CGA	p.R381R		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	381					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CCAAGTTTCGGGATTTCTTCC	0.557													16	35					0	0	0.007413	0	0
CEACAM21	90273	broad.mit.edu	37	19	42083671	42083671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42083671C>T	uc002ore.3	+	2	280	c.184C>T	c.(184-186)CTT>TTT	p.L62F	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Missense_Mutation_p.L62F	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	62	Extracellular (Potential).					integral to membrane				ovary(1)	1						GCCCGAGAATCTTTACAGCTA	0.502													15	39					0	0	0.003163	0	0
CEACAM21	90273	broad.mit.edu	37	19	42083815	42083815	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42083815C>T	uc002ore.3	+	2	424	c.328C>T	c.(328-330)CAG>TAG	p.Q110*	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Nonsense_Mutation_p.Q110*	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	110	Extracellular (Potential).					integral to membrane				ovary(1)	1						TCTGCATTTCCAGAACGTCAC	0.488													28	18					0	0	0.006320	0	0
CEACAM21	90273	broad.mit.edu	37	19	42085767	42085767	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42085767G>A	uc002ore.3	+	3	582	c.486G>A	c.(484-486)GTG>GTA	p.V162V	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Silent_p.V162V	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	162	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						AGGGCTCCGTGGTCCTGACCT	0.532													13	31					0	0	0.002450	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260607	42260607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42260607C>T	uc002orm.2	+	2	313	c.164C>T	c.(163-165)GCC>GTC	p.A55V		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	55	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CTTCTACTCGCCCACAACCTG	0.493													40	99					0	0	0.006999	0	0
CEACAM3	1084	broad.mit.edu	37	19	42312871	42312871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42312871C>T	uc002orn.1	+	3	521	c.445C>T	c.(445-447)CCT>TCT	p.P149S	CEACAM3_uc010eia.1_Missense_Mutation_p.P149S|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	149	Extracellular (Potential).					integral to membrane				skin(1)	1						CCCAGGCCTTCCTGTGGGGGC	0.607													93	55					0	0	0.003610	0	0
TMEM145	284339	broad.mit.edu	37	19	42821907	42821907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42821907G>A	uc002otk.1	+	12	999	c.947G>A	c.(946-948)GGC>GAC	p.G316D		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	316						integral to membrane					0		Prostate(69;0.00682)				TCGCCGGCCGGCTACGGGCTC	0.577													33	31					0	0	0.002096	0	0
MEGF8	1954	broad.mit.edu	37	19	42837848	42837848	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42837848C>T	uc002otl.3	+	2	914	c.279C>T	c.(277-279)TCC>TCT	p.S93S		NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	93	Extracellular (Potential).|CUB 1.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				ACGGTGACTCCCCGCGAGGGC	0.617													52	26					0	0	0.003610	0	0
LIPE	3991	broad.mit.edu	37	19	42930782	42930782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:42930782C>T	uc002otr.2	-	1	797	c.520G>A	c.(520-522)GAA>AAA	p.E174K	uc010eif.1_Intron|uc002ott.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|LIPE_uc002ots.1_5'Flank	NM_005357	NP_005348	Q05469	LIPS_HUMAN	hormone-sensitive lipase	174					cholesterol metabolic process|protein phosphorylation|triglyceride catabolic process	caveola|cytosol	hormone-sensitive lipase activity|protein binding			ovary(1)|breast(1)	2		Prostate(69;0.00682)				GACGTAGATTCAGTCGGGGCA	0.557													32	85					0	0	0.003271	0	0
CEACAM8	1088	broad.mit.edu	37	19	43097711	43097711	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43097711C>A	uc002oud.2	-	2	508	c.406G>T	c.(406-408)GGC>TGC	p.G136C	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron	NM_001816	NP_001807	P31997	CEAM8_HUMAN	carcinoembryonic antigen-related cell adhesion	136	Ig-like V-type.				immune response	anchored to membrane|extracellular space|integral to plasma membrane				ovary(1)	1		Prostate(69;0.00899)				CTGAACTGGCCAGTTACTTCT	0.512													7	110					0.000157383	0.000226799	0.003080	1	0
PSG6	5675	broad.mit.edu	37	19	43411146	43411146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43411146G>A	uc002ovj.1	-	5	1220	c.1168C>T	c.(1168-1170)CTC>TTC	p.L390F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.L397F|PSG6_uc002ovi.2_Missense_Mutation_p.L391F|PSG6_uc010xwk.1_Missense_Mutation_p.L230F|PSG11_uc002ovk.1_Missense_Mutation_p.L389F|PSG6_uc002ove.1_Missense_Mutation_p.L180F|PSG6_uc002ovf.1_Missense_Mutation_p.L297F|PSG6_uc002ovg.1_Missense_Mutation_p.L390F	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	390	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CAAGCATAGAGCCCGCTATGA	0.448													138	123					0	0	0.003610	0	0
PSG6	5675	broad.mit.edu	37	19	43421912	43421912	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43421912C>T	uc002ovj.1	-	1	85	c.33G>A	c.(31-33)CAG>CAA	p.Q11Q	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ovf.1_Silent_p.Q11Q|PSG6_uc002ovg.1_Silent_p.Q11Q	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	11					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				AGGTGATGTGCTGAGTGCAGG	0.597													29	83					0	0	0.004878	0	0
PSG2	5670	broad.mit.edu	37	19	43579635	43579635	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43579635G>A	uc002ovr.2	-	3	673	c.580C>T	c.(580-582)CAG>TAG	p.Q194*	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Nonsense_Mutation_p.Q194*|PSG2_uc010eiq.1_Nonsense_Mutation_p.Q194*|PSG2_uc002ovs.3_Nonsense_Mutation_p.Q194*|PSG2_uc002ovt.3_Nonsense_Mutation_p.Q194*	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	194	Ig-like C2-type 1.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCGGACAGCTGAAACCTATGA	0.498													75	224					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43679500	43679500	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43679500C>T	uc002ovu.2	-	4	962	c.831G>A	c.(829-831)GGG>GGA	p.G277G	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Silent_p.G152G|PSG5_uc002ovx.2_Silent_p.G277G|PSG5_uc002ovv.2_Silent_p.G370G|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	277	Ig-like C2-type 2.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GCTGAAACTTCCCATTAATTG	0.443													60	169					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43680064	43680064	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43680064C>A	uc002ovu.2	-	3	798	c.667G>T	c.(667-669)GAT>TAT	p.D223Y	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.D223Y|PSG5_uc002ovv.2_Missense_Mutation_p.D316Y|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	223	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				ATGCCACCATCTCGGTCCCGT	0.493													73	71					9.24773e-40	1.35121e-39	0.003610	1	0
PSG5	5673	broad.mit.edu	37	19	43690509	43690509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43690509C>T	uc002ovu.2	-	1	180	c.49G>A	c.(49-51)GGG>AGG	p.G17R	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'Flank|PSG5_uc002ovx.2_Missense_Mutation_p.G17R|PSG5_uc002ovv.2_Missense_Mutation_p.G17R|PSG5_uc002ovw.2_Missense_Mutation_p.G17R	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	17					female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				AGCAGGAGCCCCTTCCAGGTG	0.587													28	104					0	0	0.004878	0	0
PSG5	5673	broad.mit.edu	37	19	43690519	43690519	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43690519G>A	uc002ovu.2	-	1	170	c.39C>T	c.(37-39)ATC>ATT	p.I13I	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'Flank|PSG5_uc002ovx.2_Silent_p.I13I|PSG5_uc002ovv.2_Silent_p.I13I|PSG5_uc002ovw.2_Silent_p.I13I	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	13					female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				CCTTCCAGGTGATGTGCTGTG	0.597													35	99					0	0	0.001951	0	0
PSG4	5672	broad.mit.edu	37	19	43702150	43702150	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43702150G>A	uc002ovy.2	-	3	810	c.708C>T	c.(706-708)CTC>CTT	p.L236L	PSG6_uc010xwk.1_Silent_p.L75L|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Intron|PSG4_uc002ovz.2_Silent_p.L236L	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	236					defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GATACTCACGGAGGAGATTCA	0.522													49	156					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43762387	43762387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43762387C>T	uc002owd.3	-	5	1309	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG9_uc002owe.3_Missense_Mutation_p.E311K|PSG9_uc010xwm.1_Missense_Mutation_p.E311K|PSG9_uc002owf.3_Missense_Mutation_p.E218K|PSG9_uc002owg.2_Missense_Mutation_p.E311K|PSG9_uc002owh.2_Missense_Mutation_p.E218K	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	404	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTGGAGATTTCCTTGCCAGTG	0.448													76	165					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43762595	43762595	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43762595G>A	uc002owd.3	-	5	1101	c.1002C>T	c.(1000-1002)CTC>CTT	p.L334L	PSG9_uc002owe.3_Silent_p.L241L|PSG9_uc010xwm.1_Silent_p.L241L|PSG9_uc002owf.3_Silent_p.L148L|PSG9_uc002owg.2_Silent_p.L241L|PSG9_uc002owh.2_Silent_p.L148L	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	334					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AAATTCTGGGGAGGTCTGGAC	0.488													52	153					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43772110	43772110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:43772110C>T	uc002owd.3	-	2	355	c.256G>A	c.(256-258)GGT>AGT	p.G86S	PSG9_uc002owe.3_Missense_Mutation_p.G86S|PSG9_uc010xwm.1_Missense_Mutation_p.G86S|PSG9_uc002owf.3_Missense_Mutation_p.G86S|PSG9_uc002owg.2_Missense_Mutation_p.G86S|PSG9_uc002owh.2_Missense_Mutation_p.G86S	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	86	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				ATTATTTTACCATCAACTATA	0.428													45	181					0	0	0.003214	0	0
ZNF283	284349	broad.mit.edu	37	19	44351537	44351537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44351537C>T	uc002oxr.3	+	7	1052	c.784C>T	c.(784-786)CCC>TCC	p.P262S	ZNF283_uc002oxp.3_Missense_Mutation_p.P123S	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	262	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TGGTGAGAAACCCTATGAGTG	0.383													44	35					0	0	0.002222	0	0
ZNF283	284349	broad.mit.edu	37	19	44351843	44351843	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44351843C>A	uc002oxr.3	+	7	1358	c.1090C>A	c.(1090-1092)CAG>AAG	p.Q364K	ZNF283_uc002oxp.3_Missense_Mutation_p.Q225K	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	364	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TCAGCTTACTCAGCATCAGAA	0.388													20	78					1.15919e-05	1.67506e-05	0.001216	1	0
ZNF230	7773	broad.mit.edu	37	19	44515476	44515476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44515476C>T	uc002oyb.1	+	5	1536	c.1285C>T	c.(1285-1287)CTT>TTT	p.L429F		NM_006300	NP_006291	Q9UIE0	ZN230_HUMAN	zinc finger protein 230	429	C2H2-type 10; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				TGGAAAGAGGCTTGTACACCG	0.458													26	25					0	0	0.003954	0	0
ZNF225	7768	broad.mit.edu	37	19	44636451	44636451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44636451C>T	uc002oyj.1	+	5	1927	c.1684C>T	c.(1684-1686)CAC>TAC	p.H562Y	ZNF225_uc010eje.1_Missense_Mutation_p.H479Y|ZNF225_uc010ejf.1_Missense_Mutation_p.H562Y	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	562	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CCAGAGGGTCCACACCGGAGA	0.448													21	31					0	0	0.001523	0	0
ZNF235	9310	broad.mit.edu	37	19	44791712	44791712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44791712G>A	uc002oza.3	-	5	1979	c.1876C>T	c.(1876-1878)CCA>TCA	p.P626S	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.P622S|ZNF235_uc010xwx.1_Missense_Mutation_p.P540S	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				CATTTATATGGTTTCTCTCCG	0.458													43	83					0	0	0.002522	0	0
ZNF235	9310	broad.mit.edu	37	19	44793050	44793050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44793050G>A	uc002oza.3	-	5	641	c.538C>T	c.(538-540)CCG>TCG	p.P180S	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.P176S|ZNF235_uc010xwx.1_Missense_Mutation_p.P94S	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				CAAGAATTCGGAACTTTCCCA	0.348													10	55					0	0	0.006214	0	0
ZNF285	26974	broad.mit.edu	37	19	44891833	44891833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44891833G>A	uc002ozd.3	-	4	661	c.574C>T	c.(574-576)CAT>TAT	p.H192Y	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.H199Y	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GACTCATGATGATCACATGAG	0.458													24	73					0	0	0.003330	0	0
ZNF180	7733	broad.mit.edu	37	19	44981195	44981195	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:44981195G>A	uc002ozf.3	-	5	1785	c.1503C>T	c.(1501-1503)TCC>TCT	p.S501S	ZNF180_uc002ozh.3_Silent_p.S158S|ZNF180_uc002ozi.3_Silent_p.S474S|ZNF180_uc002ozg.3_Silent_p.S500S|ZNF180_uc010ejm.2_Silent_p.S476S	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	501	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				TTTGACTAAAGGATTTCCCAC	0.383													16	43					0	0	0.004007	0	0
BCAM	4059	broad.mit.edu	37	19	45316839	45316839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:45316839G>A	uc002ozu.2	+	6	790	c.746G>A	c.(745-747)GGC>GAC	p.G249D	BCAM_uc002ozt.1_Missense_Mutation_p.G249D	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	249	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GGCCGCCACGGCCGCCTGGAC	0.667													53	97					0	0	0.003610	0	0
CLPTM1	1209	broad.mit.edu	37	19	45495974	45495974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:45495974C>T	uc002pai.2	+	14	1844	c.1829C>T	c.(1828-1830)CCC>CTC	p.P610L	CLPTM1_uc010xxf.1_Missense_Mutation_p.P508L|CLPTM1_uc010xxg.1_Missense_Mutation_p.P596L	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	610	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		GCTGCCGCCCCCGTGGCCGAG	0.657													89	237					0	0	0.003610	0	0
OPA3	80207	broad.mit.edu	37	19	46032324	46032324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:46032324G>A	uc002pcj.3	-	2	633	c.533C>T	c.(532-534)TCC>TTC	p.S178F		NM_001017989	NP_001017989	Q9H6K4	OPA3_HUMAN	OPA3 protein isoform a	177					response to stimulus|visual perception	mitochondrion					0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00778)|GBM - Glioblastoma multiforme(486;0.0976)|Epithelial(262;0.242)		CTATTTCTCGGACGCCGGCGC	0.662													19	39					0	0	0.001216	0	0
GPR4	2828	broad.mit.edu	37	19	46095087	46095087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:46095087G>A	uc002pcm.2	-	2	983	c.38C>T	c.(37-39)TCG>TTG	p.S13L	OPA3_uc010xxk.1_Intron	NM_005282	NP_005273	P46093	GPR4_HUMAN	G protein-coupled receptor 4	13	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(262;0.0071)|GBM - Glioblastoma multiforme(486;0.128)|Epithelial(262;0.223)		GTCCACGCGCGAGTCCACGTG	0.687													11	34					0	0	0.002450	0	0
GIPR	2696	broad.mit.edu	37	19	46176156	46176157	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:46176156_46176157GG>AA	uc002pcu.1	+	5	427_428	c.328_329GG>AA	c.(328-330)GGA>AAA	p.G110K	GIPR_uc002pct.1_Missense_Mutation_p.G110K|GIPR_uc010xxp.1_Missense_Mutation_p.G74K|GIPR_uc010xxq.1_RNA|MIR642_hsa-mir-642|MI0003657_5'Flank	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	110	Extracellular (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TGGCCAATGGGGACTTTGGAGA	0.505													16	52					0	0	0.004672	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307585	46307585	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:46307585G>A	uc002pdm.2	-	3	1721	c.1578C>T	c.(1576-1578)TTC>TTT	p.F526F	RSPH6A_uc002pdl.2_Silent_p.F262F	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	526	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						GGATGCCCTCGAAGTCCGGGT	0.652													15	27					0	0	0.002450	0	0
SYMPK	8189	broad.mit.edu	37	19	46319749	46319749	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:46319749G>A	uc002pdn.2	-	25	3590	c.3345C>T	c.(3343-3345)CCC>CCT	p.P1115P	RSPH6A_uc002pdm.2_5'Flank	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	1115					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		CCTCCTCCAAGGGCCCCGCAG	0.657													9	10					0	0	0.000978	0	0
FKRP	79147	broad.mit.edu	37	19	47258805	47258805	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:47258805A>G	uc002pfn.2	+	4	395	c.98A>G	c.(97-99)AAT>AGT	p.N33S	FKRP_uc002pfp.2_Missense_Mutation_p.N33S	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	33						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		CAGCCTAGGAATTCCCGGGCC	0.692													5	13					0	0	0.000602	0	0
ZC3H4	23211	broad.mit.edu	37	19	47569796	47569796	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:47569796G>A	uc002pga.3	-	15	3767	c.3729C>T	c.(3727-3729)CCC>CCT	p.P1243P	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1243							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CCCCGGGCTGGGGTGGGGCAC	0.701													10	8					0	0	0.000673	0	0
DHX34	9704	broad.mit.edu	37	19	47856916	47856917	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:47856916_47856917CC>TT	uc010xyn.1	+	2	970_971	c.629_630CC>TT	c.(628-630)ACC>ATT	p.T210I	DHX34_uc010elc.1_Missense_Mutation_p.T210I	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	210	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GTGGCGTGCACCCAGCCCCGGC	0.639													6	21					0	0	0.004672	0	0
SULT2A1	6822	broad.mit.edu	37	19	48374808	48374808	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:48374808C>T	uc002phr.2	-	6	902	c.762G>A	c.(760-762)TGG>TGA	p.W254*		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	254					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		AGTGATTTTTCCAGTCCCCAG	0.483													35	15					0	0	0.003271	0	0
LMTK3	114783	broad.mit.edu	37	19	49001172	49001172	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49001172G>A	uc002pjk.2	-	12	3241	c.3241C>T	c.(3241-3243)CTG>TTG	p.L1081L		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCTCTCTCCAGAGAGGTCTCT	0.706													3	2					0	0	0.004672	0	0
FAM83E	54854	broad.mit.edu	37	19	49106982	49106982	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49106982G>A	uc002pjn.2	-	4	1010	c.945C>T	c.(943-945)TCC>TCT	p.S315S		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	315										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		AGCGGCGGCGGGACACGCGGT	0.801													5	0					0	0	0.000602	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49348843	49348843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49348843G>A	uc002pkx.2	-	15	2148	c.1597C>T	c.(1597-1599)CCT>TCT	p.P533S	PLEKHA4_uc002pkw.1_Missense_Mutation_p.P48S|PLEKHA4_uc010eml.2_Missense_Mutation_p.P508S	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	533						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GGGGACCTAGGGGAGCTCAGT	0.527													29	23					0	0	0.006320	0	0
TULP2	7288	broad.mit.edu	37	19	49388798	49388798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49388798C>T	uc002pkz.2	-	9	1119	c.968G>A	c.(967-969)CGA>CAA	p.R323Q		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	323					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		TCTTCTCTTTCGCCCAGCCAG	0.403													15	40					0	0	0.002450	0	0
LIN7B	64130	broad.mit.edu	37	19	49621263	49621263	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49621263A>G	uc002pmp.2	+	5	634	c.590A>G	c.(589-591)CAT>CGT	p.H197R	PPFIA3_uc002pmr.2_5'Flank|PPFIA3_uc010yai.1_5'Flank	NM_022165	NP_071448	Q9HAP6	LIN7B_HUMAN	lin-7 homolog B	197					exocytosis|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein domain specific binding				0		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;5e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000191)|GBM - Glioblastoma multiforme(486;0.00449)|Epithelial(262;0.01)		CGCCAACAGCATCAGAGCTAC	0.647													11	56					0	0	0.001368	0	0
HRC	3270	broad.mit.edu	37	19	49657807	49657807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49657807C>T	uc002pmv.2	-	1	875	c.688G>A	c.(688-690)GGA>AGA	p.G230R		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	230	4 X tandem repeats, acidic.|2-4.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		TGATGGTGTCCATCTGAGACA	0.353													8	17					0	0	0.003080	0	0
SLC6A16	28968	broad.mit.edu	37	19	49796617	49796617	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49796617G>A	uc002pmz.2	-	10	1875	c.1641C>T	c.(1639-1641)TTC>TTT	p.F547F	SLC6A16_uc002pna.2_Silent_p.F547F	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	547	Helical; Name=9; (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		GGCCGCACACGAACATGAGCA	0.498													11	10					0	0	0.000673	0	0
FLT3LG	2323	broad.mit.edu	37	19	49983820	49983820	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:49983820C>T	uc010yau.1	+	8	762	c.672C>T	c.(670-672)GTC>GTT	p.V224V	FLT3LG_uc002pnv.2_Silent_p.V142V|FLT3LG_uc002pnw.2_Silent_p.V142V|FLT3LG_uc002pnu.2_Silent_p.V224V|FLT3LG_uc002pnx.2_Silent_p.V224V|FLT3LG_uc010yav.1_Silent_p.V142V	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	224	Cytoplasmic (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		TGCCCCCCGTCCCCAGTCCCC	0.667													3	10					0	0	0.000248	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169131	50169131	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50169131C>T	uc002ppa.2	+	1	733	c.51C>T	c.(49-51)TTC>TTT	p.F17F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F17F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	17					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTTGGGTTTCCGGCCAGAGG	0.572													14	47					0	0	0.002450	0	0
CPT1C	126129	broad.mit.edu	37	19	50216832	50216832	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50216832C>T	uc002ppj.2	+	19	2587	c.2382C>T	c.(2380-2382)TCC>TCT	p.S794S	CPT1C_uc002ppk.2_Silent_p.S783S|CPT1C_uc010eng.2_Silent_p.S794S|CPT1C_uc010enh.2_Silent_p.S794S|CPT1C_uc010eni.1_Silent_p.S362S	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	794	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		CTGGGGCCTCCAAGGCCTCAA	0.577													21	49					0	0	0.004656	0	0
TSKS	60385	broad.mit.edu	37	19	50249871	50249871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50249871G>A	uc002ppm.2	-	6	859	c.848C>T	c.(847-849)CCC>CTC	p.P283L		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	283							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TGGCGGGCCGGGGCAGCCCTG	0.577													7	21					0	0	0.001984	0	0
TSKS	60385	broad.mit.edu	37	19	50250056	50250056	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50250056C>T	uc002ppm.2	-	6	675	c.664_splice	c.e6-1	p.E222_splice		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate								protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GCAGCTTCTCCTGGGTGGTAA	0.363													5	28					0	0	0.000602	0	0
TBC1D17	79735	broad.mit.edu	37	19	50386145	50386145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50386145C>T	uc002pqo.2	+	8	1075	c.923C>T	c.(922-924)TCG>TTG	p.S308L	TBC1D17_uc010enn.1_RNA|TBC1D17_uc010ybg.1_Missense_Mutation_p.S275L|TBC1D17_uc002pqp.2_5'UTR|TBC1D17_uc002pqq.1_RNA|TBC1D17_uc002pqr.2_5'UTR|TBC1D17_uc002pqs.2_RNA	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	308						intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CGGATCTTCTCGGGGGTGAGT	0.672													14	39					0	0	0.004007	0	0
TBC1D17	79735	broad.mit.edu	37	19	50387558	50387558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50387558C>T	uc002pqo.2	+	11	1327	c.1175C>T	c.(1174-1176)CCC>CTC	p.P392L	TBC1D17_uc010ybg.1_Missense_Mutation_p.P359L|TBC1D17_uc002pqp.2_Missense_Mutation_p.P43L|TBC1D17_uc002pqq.1_RNA|TBC1D17_uc002pqr.2_Missense_Mutation_p.P43L|TBC1D17_uc002pqs.2_RNA	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	392	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		TACGAGGGTCCCGAGAACCCG	0.637													75	72					0	0	0.003610	0	0
MYH14	79784	broad.mit.edu	37	19	50812353	50812353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50812353G>A	uc002prr.1	+	40	5803	c.5756G>A	c.(5755-5757)AGG>AAG	p.R1919K	MYH14_uc010enu.1_Missense_Mutation_p.R1960K|MYH14_uc002prq.1_Missense_Mutation_p.R1927K|MYH14_uc010ycb.1_Missense_Mutation_p.R270K|MYH14_uc002prs.1_Missense_Mutation_p.R270K	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1919	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GGCCGCCGGAGGCTGCAGCGT	0.622													19	48					0	0	0.007413	0	0
KCNC3	3748	broad.mit.edu	37	19	50826822	50826822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50826822G>A	uc002pru.1	-	2	1683	c.1388C>T	c.(1387-1389)GCC>GTC	p.A463V	KCNC3_uc002prt.1_Missense_Mutation_p.A99V	NM_004977	NP_004968	Q14003	KCNC3_HUMAN	Shaw-related voltage-gated potassium channel	463	Helical; Name=Segment S5; (Potential).				cell death	voltage-gated potassium channel complex	voltage-gated potassium channel activity			pancreas(1)	1		all_neural(266;0.057)|Ovarian(192;0.208)		OV - Ovarian serous cystadenocarcinoma(262;0.00283)|GBM - Glioblastoma multiforme(134;0.0181)		AATCATGGTGGCGAAGATGAG	0.607													10	31					0	0	0.000673	0	0
MYBPC2	4606	broad.mit.edu	37	19	50958516	50958516	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:50958516C>T	uc002psf.2	+	19	2217	c.2166C>T	c.(2164-2166)TCC>TCT	p.S722S		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	722	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		TAGGGGTCTCCCAGCCCAGCA	0.488													30	101					0	0	0.005524	0	0
KLK1	3816	broad.mit.edu	37	19	51322477	51322477	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51322477G>A	uc002ptk.1	-	5	801	c.762C>T	c.(760-762)ATC>ATT	p.I254I	KLK1_uc010ycg.1_RNA	NM_002257	NP_002248	P06870	KLK1_HUMAN	kallikrein 1 preproprotein	254	Peptidase S1.				proteolysis	nucleus	serine-type endopeptidase activity				0		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00399)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGTGTCCTCGATCCACTTCA	0.542													46	37					0	0	0.003610	0	0
KLK15	55554	broad.mit.edu	37	19	51330320	51330320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51330320C>T	uc002ptl.2	-	3	326	c.295G>A	c.(295-297)GAA>AAA	p.E99K	KLK15_uc002ptm.2_Missense_Mutation_p.E99K|KLK15_uc002ptn.2_Missense_Mutation_p.E99K|KLK15_uc002pto.2_Missense_Mutation_p.E98K|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Missense_Mutation_p.E98K|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	99	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		CTGCGCGCTTCGTAGCGCGGG	0.667													26	58					0	0	0.005443	0	0
KLK3	354	broad.mit.edu	37	19	51361294	51361294	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51361294G>A	uc002pts.1	+	3	257	c.216G>A	c.(214-216)GTG>GTA	p.V72V	KLK3_uc010ycj.1_Silent_p.V72V|KLK3_uc002ptr.1_Intron|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	72	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		GCAAAAGCGTGATCTTGCTGG	0.547													7	22					0	0	0.004482	0	0
KLK3	354	broad.mit.edu	37	19	51361325	51361325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51361325C>T	uc002pts.1	+	3	288	c.247C>T	c.(247-249)CCT>TCT	p.P83S	KLK3_uc010ycj.1_Missense_Mutation_p.P83S|KLK3_uc002ptr.1_Intron|KLK3_uc010eof.1_RNA	NM_001030047	NP_001025218	P07288	KLK3_HUMAN	prostate specific antigen isoform 3	83	Peptidase S1.				negative regulation of angiogenesis|proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|kidney(1)	3		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00763)|GBM - Glioblastoma multiforme(134;0.0144)		CCTGTTTCATCCTGAAGACAC	0.542													15	15					0	0	0.006122	0	0
KLK5	25818	broad.mit.edu	37	19	51452135	51452135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51452135C>T	uc002pue.2	-	5	790	c.572G>A	c.(571-573)GGG>GAG	p.G191E	KLK5_uc002puf.2_Missense_Mutation_p.G191E|KLK5_uc002pug.2_Missense_Mutation_p.G191E	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	191	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		CTTGGTTGTCCCCCAGCCAGA	0.507													14	31					0	0	0.003163	0	0
KLK7	5650	broad.mit.edu	37	19	51483678	51483678	+	Missense_Mutation	SNP	G	A	A	rs149466250	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51483678G>A	uc002puo.2	-	4	389	c.287C>T	c.(286-288)TCG>TTG	p.S96L	KLK7_uc002pup.2_Missense_Mutation_p.S96L|KLK7_uc010yco.1_5'UTR|KLK7_uc010eok.2_Missense_Mutation_p.S24L	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	96	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		GAATGACTTCGAGGCCTTGAT	0.557													16	36					0	0	0.006122	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51630379	51630379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51630379C>T	uc002pvu.2	+	4	908	c.841C>T	c.(841-843)CCC>TCC	p.P281S	SIGLEC9_uc010yct.1_Missense_Mutation_p.P281S	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	281	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		TGACAGCAATCCCCCTGCCAG	0.602													48	40					0	0	0.003610	0	0
SIGLECP3	284367	broad.mit.edu	37	19	51671442	51671442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51671442G>A	uc010ycv.1	+	3	591	c.581G>A	c.(580-582)GGA>GAA	p.G194E	SIGLECP3_uc010ycu.1_Missense_Mutation_p.G194E|SIGLECP3_uc002pvy.3_Missense_Mutation_p.G194E|SIGLECP3_uc002pvz.3_Missense_Mutation_p.G194E					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						TGTGAGCAGGGAACACCCCCC	0.637													19	47					0	0	0.002299	0	0
CD33	945	broad.mit.edu	37	19	51742917	51742917	+	Missense_Mutation	SNP	G	A	A	rs148758925	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51742917G>A	uc002pwa.2	+	7	1109	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	CD33_uc010eos.1_3'UTR|CD33_uc010eot.1_Missense_Mutation_p.E230K|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	357	ITIM motif 2.|Cytoplasmic (Potential).				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CACCTCCACCGAATACTCAGA	0.527													11	37					0	0	0.000978	0	0
C19orf75	284369	broad.mit.edu	37	19	51768752	51768752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51768752G>A	uc002pwb.1	+	3	534	c.153G>A	c.(151-153)ATG>ATA	p.M51I	C19orf75_uc010eov.1_Intron|C19orf75_uc010ycw.1_Intron	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	51						integral to membrane				ovary(1)|pancreas(1)	2						TGGATGGCATGGATGGCAGCC	0.572													15	33					0	0	0.002450	0	0
CEACAM18	729767	broad.mit.edu	37	19	51984798	51984798	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:51984798C>T	uc002pwv.1	+	4	735	c.735C>T	c.(733-735)TCC>TCT	p.S245S		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	245						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGACAATTTCCCCAGACGGCA	0.488													10	26					0	0	0.000978	0	0
SIGLEC6	946	broad.mit.edu	37	19	52031024	52031024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52031024G>A	uc002pwy.2	-	7	1327	c.1165C>T	c.(1165-1167)CCC>TCC	p.P389S	SIGLEC6_uc002pwz.2_Missense_Mutation_p.P373S|SIGLEC6_uc002pxa.2_Intron|SIGLEC6_uc010ydb.1_Missense_Mutation_p.P326S|SIGLEC6_uc010ydc.1_Intron|SIGLEC6_uc010eoz.1_Intron	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	389	Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		ACCATGACGGGGTTCACATCA	0.498													71	66					0	0	0.003610	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52131337	52131337	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52131337C>T	uc002pxe.2	-	5	886	c.747G>A	c.(745-747)GAG>GAA	p.E249E		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	249	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TTTGCAGGATCTCTAGGGCTT	0.602													17	13					0	0	0.001216	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52132744	52132744	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52132744G>A	uc002pxe.2	-	3	706	c.567C>T	c.(565-567)GAC>GAT	p.D189D		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	189	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TGGTCTCGGGGTCCAGGGGGC	0.657													12	6					0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	19	52196208	52196208	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52196208G>A	uc002pxg.1	-	1		c.502C>T			uc002pxj.1_5'Flank|MIR125A_hsa-mir-125a|MI0000469_5'Flank|NCRNA00085_uc002pxk.3_5'Flank|NCRNA00085_uc002pxl.3_5'Flank					Homo sapiens cDNA FLJ44008 fis, clone TESTI4023942.																		GACCCTGGGAGGAAGAGCCGG	0.577													3	5					0	0	0.004672	0	0
HAS1	3036	broad.mit.edu	37	19	52222579	52222579	+	Silent	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52222579C>G	uc002pxo.1	-	2	617	c.582G>C	c.(580-582)CTG>CTC	p.L194L	HAS1_uc010epc.1_5'Flank|HAS1_uc010epd.1_Silent_p.L159L|HAS1_uc002pxn.1_Silent_p.L201L|HAS1_uc002pxp.1_Silent_p.L193L	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	194	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CCTCCACTGCCAGCCGCCCAG	0.582													4	11					0	0	0.000248	0	0
FPR1	2357	broad.mit.edu	37	19	52249761	52249761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52249761G>A	uc002pxq.2	-	2	582	c.487C>T	c.(487-489)CGT>TGT	p.R163C		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	163	Extracellular (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	GTAGTCACACGAATGATAACT	0.537													20	49					0	0	0.002780	0	0
ZNF616	90317	broad.mit.edu	37	19	52618571	52618571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52618571G>A	uc002pym.2	-	4	2129	c.1846C>T	c.(1846-1848)CAG>TAG	p.Q616*	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	616	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		GTGGAGCCCTGATTAAAGGCT	0.433													8	25					0	0	0.000978	0	0
ZNF836	162962	broad.mit.edu	37	19	52659810	52659810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52659810G>A	uc010ydi.1	-	5	1500	c.1126C>T	c.(1126-1128)CAC>TAC	p.H376Y	ZNF836_uc010ydj.1_Missense_Mutation_p.H376Y	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	376	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTCTCTGGTGATTTACAAGA	0.403													19	16					0	0	0.001216	0	0
ZNF534	147658	broad.mit.edu	37	19	52942068	52942068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:52942068C>T	uc002pzk.2	+	4	1455	c.1394C>T	c.(1393-1395)TCC>TTC	p.S465F	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.S452F	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	465	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACAAGTCTTCCCTAACCTAT	0.423													11	4					0	0	0.000978	0	0
ZNF28	7576	broad.mit.edu	37	19	53304429	53304429	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53304429G>A	uc002qad.2	-	4	789	c.669C>T	c.(667-669)TCC>TCT	p.S223S	ZNF28_uc002qac.2_Silent_p.S170S|ZNF28_uc010eqe.2_Silent_p.S169S	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	223	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TACAATTAAAGGATTTGCCAC	0.323													31	82					0	0	0.001786	0	0
ZNF320	162967	broad.mit.edu	37	19	53384916	53384916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53384916G>A	uc002qag.2	-	4	654	c.463C>T	c.(463-465)CAT>TAT	p.H155Y	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.H101Y|ZNF320_uc002qai.2_Missense_Mutation_p.H155Y	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	155					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TCTCCAGTATGAATTCTCCTA	0.363													28	89					0	0	0.006320	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473696	53473696	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53473696G>A	uc002qan.3	-	4		c.805C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						AGGAATACAAGAAATTCTTTG	0.373													29	19					0	0	0.005443	0	0
ZNF677	342926	broad.mit.edu	37	19	53741139	53741139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53741139G>A	uc002qbf.1	-	5	1026	c.841C>T	c.(841-843)CAT>TAT	p.H281Y	ZNF677_uc002qbg.1_Missense_Mutation_p.H281Y	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	281	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		ATTCTCTGATGATTAGTGAGG	0.398													24	75					0	0	0.002299	0	0
ZNF845	91664	broad.mit.edu	37	19	53854487	53854487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53854487C>T	uc010ydv.1	+	4	676	c.559C>T	c.(559-561)CAC>TAC	p.H187Y	ZNF845_uc010ydw.1_Missense_Mutation_p.H187Y	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	187					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCTAAAACCCACATTTCTAA	0.368													18	83					0	0	0.004990	0	0
ZNF761	388561	broad.mit.edu	37	19	53959970	53959970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:53959970C>T	uc010eqp.2	+	7	2667	c.2209C>T	c.(2209-2211)CGT>TGT	p.R737C	ZNF761_uc010ydy.1_Missense_Mutation_p.R683C|ZNF761_uc002qbt.1_Missense_Mutation_p.R683C	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	737	C2H2-type 19.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TACATGCCATCGTAGACTTCA	0.403													58	49					0	0	0.003610	0	0
MIR523	574471	broad.mit.edu	37	19	54201701	54201701	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54201701C>T	hsa-mir-523|MI0003153	+			c.63C>T			MIR518F_hsa-mir-518f|MI0003154_5'Flank|MIR520B_hsa-mir-520b|MI0003155_5'Flank																	0						GAACGCGCTTCCCTATAGAGG	0.443													13	46					0	0	0.002450	0	0
MIR518B	574474	broad.mit.edu	37	19	54206011	54206011	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54206011G>A	hsa-mir-518b|MI0003156	+			c.21G>A																				0						GCCCTCCAGAGGGAAGCGCTT	0.418													16	48					0	0	0.004990	0	0
MIR517A	574479	broad.mit.edu	37	19	54215537	54215537	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54215537C>T	hsa-mir-517a|MI0003161	+			c.16C>T			MIR519D_hsa-mir-519d|MI0003162_5'Flank																	0						GGCAGTGACCCTCTAGATGGA	0.254													25	55					0	0	0.003954	0	0
NLRP12	91662	broad.mit.edu	37	19	54307284	54307284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54307284C>T	uc002qch.3	-	6	2727	c.2507G>A	c.(2506-2508)GGA>GAA	p.G836E	NLRP12_uc010eqw.2_Missense_Mutation_p.G119E|NLRP12_uc002qci.3_Missense_Mutation_p.G836E|NLRP12_uc002qcj.3_Missense_Mutation_p.G837E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G837E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	836	LRR 1.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAGTGCATTTCCTGTCAGGTC	0.562													31	21					0	0	0.001786	0	0
NLRP12	91662	broad.mit.edu	37	19	54313422	54313422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54313422C>T	uc002qch.3	-	3	1711	c.1491G>A	c.(1489-1491)ATG>ATA	p.M497I	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.M497I|NLRP12_uc002qcj.3_Missense_Mutation_p.M497I|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.M497I	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	497	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GGAAGATGTTCATGTTGAGGA	0.502													103	56					0	0	0.003610	0	0
PRKCG	5582	broad.mit.edu	37	19	54395012	54395012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54395012G>A	uc002qcq.1	+	6	896	c.614G>A	c.(613-615)CGG>CAG	p.R205Q	PRKCG_uc010eqz.1_Missense_Mutation_p.R205Q|PRKCG_uc010yef.1_Missense_Mutation_p.R205Q|PRKCG_uc010yeg.1_Missense_Mutation_p.R205Q|PRKCG_uc010yeh.1_Missense_Mutation_p.R92Q	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	205	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCAGACCCTCGGAACCTGACG	0.532													24	103					0	0	0.002780	0	0
CACNG7	59284	broad.mit.edu	37	19	54444867	54444867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54444867G>A	uc002qcr.1	+	4	583	c.568G>A	c.(568-570)GAG>AAG	p.E190K	CACNG7_uc010era.1_Missense_Mutation_p.E190K	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	190	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		CCTACTCAAAGAGGTGACGTC	0.443													27	88					0	0	0.007291	0	0
MBOAT7	79143	broad.mit.edu	37	19	54691087	54691087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54691087G>A	uc002qdq.2	-	5	555	c.289C>T	c.(289-291)CCC>TCC	p.P97S	MBOAT7_uc010erg.2_5'UTR|MBOAT7_uc010yem.1_Missense_Mutation_p.P79S|MBOAT7_uc002qdr.2_Missense_Mutation_p.P97S|MBOAT7_uc002qds.2_Intron|MBOAT7_uc010yen.1_Intron|MBOAT7_uc002qdt.3_Missense_Mutation_p.P97S	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	97					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					AAGGGCGTGGGAGTGGGCAGG	0.657													4	11					0	0	0.000248	0	0
LILRB5	10990	broad.mit.edu	37	19	54760538	54760539	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54760538_54760539CC>TT	uc002qex.2	-	3	279_280	c.168_169GG>AA	c.(166-171)GAGGAG>GAAAAG	p.E57K	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.E57K|LILRB5_uc002qey.2_Missense_Mutation_p.E57K|LILRB5_uc002qez.2_Missense_Mutation_p.E57K|LILRB5_uc002qfa.1_Missense_Mutation_p.E47K|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	57	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGACGGTACTCCTCAGTCTCCA	0.624													35	111					0	0	0.004672	0	0
LILRB5	10990	broad.mit.edu	37	19	54760628	54760628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54760628G>A	uc002qex.2	-	3	190	c.79C>T	c.(79-81)CCC>TCC	p.P27S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P27S|LILRB5_uc002qey.2_Missense_Mutation_p.P27S|LILRB5_uc002qez.2_Missense_Mutation_p.P27S|LILRB5_uc002qfa.1_Missense_Mutation_p.P17S|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	27	Ig-like C2-type 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GTGGGTTTGGGGAGGGTGCCT	0.622													9	45					0	0	0.000673	0	0
LILRA3	11026	broad.mit.edu	37	19	54803727	54803727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:54803727C>T	uc002qfd.2	-	3	162	c.97G>A	c.(97-99)GCT>ACT	p.A33T	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Missense_Mutation_p.A33T	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	33	Ig-like C2-type 1.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCTGGCTCAGCCCAGAGGGTG	0.552													16	49					0	0	0.001216	0	0
LAIR2	3904	broad.mit.edu	37	19	55014948	55014948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55014948G>A	uc002qgc.2	+	2	189	c.67G>A	c.(67-69)GAG>AAG	p.E23K	LAIR2_uc002qga.1_RNA|LAIR2_uc002qgb.1_Intron|LAIR2_uc002qgd.2_Missense_Mutation_p.E23K|LAIR2_uc010erl.2_Missense_Mutation_p.E23K	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	23						extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		CCACACGCAGGAGGGTAAGTC	0.577													60	18					0	0	0.003610	0	0
LILRA2	11027	broad.mit.edu	37	19	55086387	55086387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55086387C>T	uc002qgg.3	+	4	631	c.542C>T	c.(541-543)TCC>TTC	p.S181F	LILRA2_uc010ern.2_Missense_Mutation_p.S181F|LILRA2_uc002qgf.2_Missense_Mutation_p.S181F|LILRA2_uc010yfe.1_Missense_Mutation_p.S181F|LILRA2_uc010yff.1_Missense_Mutation_p.S169F|LILRA2_uc010ero.2_Missense_Mutation_p.S169F|LILRA2_uc010yfg.1_Missense_Mutation_p.S181F	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	181	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GCCATCTTCTCCGTGGGCCCC	0.567													56	91					0	0	0.003610	0	0
LILRA2	11027	broad.mit.edu	37	19	55086467	55086467	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55086467C>T	uc002qgg.3	+	4	711	c.622C>T	c.(622-624)CTA>TTA	p.L208L	LILRA2_uc010ern.2_Silent_p.L208L|LILRA2_uc002qgf.2_Silent_p.L208L|LILRA2_uc010yfe.1_Silent_p.L208L|LILRA2_uc010yff.1_Silent_p.L196L|LILRA2_uc010ero.2_Silent_p.L196L|LILRA2_uc010yfg.1_Silent_p.L208L	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	208	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TGTGTGGTCTCTACCCAGTGA	0.582													92	60					0	0	0.003610	0	0
LILRA1	11024	broad.mit.edu	37	19	55107259	55107259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55107259C>T	uc002qgh.1	+	6	999	c.817C>T	c.(817-819)CCC>TCC	p.P273S	LILRA2_uc010yfg.1_Missense_Mutation_p.P271S|LILRA1_uc010yfh.1_Missense_Mutation_p.P273S	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	273	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TGGCCCACAGCCCCAGGCTGG	0.602													29	68					0	0	0.007291	0	0
LILRB4	11006	broad.mit.edu	37	19	55175661	55175661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55175661C>T	uc002qgp.2	+	4	742	c.380C>T	c.(379-381)TCA>TTA	p.S127L	LILRB4_uc002qgq.2_Missense_Mutation_p.S127L|LILRB4_uc010ers.1_Missense_Mutation_p.S40L|LILRB4_uc002qgr.2_Missense_Mutation_p.S168L|LILRB4_uc010ert.2_Missense_Mutation_p.S168L|LILRB4_uc010eru.2_Missense_Mutation_p.S156L	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	127	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CCCACCCTTTCAGCCCTGCCG	0.582													20	84					0	0	0.001882	0	0
LILRB4	11006	broad.mit.edu	37	19	55177283	55177283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55177283G>A	uc002qgp.2	+	7	1137	c.775G>A	c.(775-777)GAG>AAG	p.E259K	LILRB4_uc002qgq.2_Missense_Mutation_p.E259K|LILRB4_uc002qgr.2_Missense_Mutation_p.E300K|LILRB4_uc010ert.2_Missense_Mutation_p.E300K|LILRB4_uc010eru.2_Missense_Mutation_p.E288K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	259	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		AAGGCACTGGGAGGTACTGAT	0.313													9	3					0	0	0.004482	0	0
KIR3DP1	768329	broad.mit.edu	37	19	55301597	55301598	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55301597_55301598GG>AA	uc010yfi.1	+	5	777_778	c.776_777GG>AA	c.(775-777)GGG>GAA	p.G259E	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Intron	NM_001015070	NP_001015070			killer-cell Ig-like receptor												0				GBM - Glioblastoma multiforme(193;0.0192)		TCAAGGGAGGGGGAGGCTCATG	0.594													20	77					0	0	0.004672	0	0
FCAR	2204	broad.mit.edu	37	19	55385768	55385768	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55385768T>G	uc002qhr.1	+	1	220	c.23T>G	c.(22-24)CTC>CGC	p.L8R	FCAR_uc002qhq.2_Missense_Mutation_p.L8R|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_5'UTR|FCAR_uc010esi.1_5'UTR|FCAR_uc002qhu.1_Missense_Mutation_p.L8R|FCAR_uc002qhv.1_Missense_Mutation_p.L8R|FCAR_uc002qhw.1_Missense_Mutation_p.L8R|FCAR_uc002qhx.1_Missense_Mutation_p.L8R|FCAR_uc002qhy.1_Missense_Mutation_p.L8R|FCAR_uc002qhz.1_Missense_Mutation_p.L8R|FCAR_uc002qia.1_Missense_Mutation_p.L8R	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	8					immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CAGACCACCCTCCTGTGTCTT	0.463													21	90					0	0	0.002299	0	0
NCR1	9437	broad.mit.edu	37	19	55420851	55420851	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55420851C>T	uc002qib.2	+	4	641	c.603C>T	c.(601-603)TTC>TTT	p.F201F	NCR1_uc002qic.2_Silent_p.F201F|NCR1_uc002qie.2_Silent_p.F201F|NCR1_uc002qid.2_Silent_p.F106F|NCR1_uc002qif.2_Silent_p.F106F|NCR1_uc010esj.2_Silent_p.F94F	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	201	Extracellular (Potential).|Ig-like 2.				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		CCTGGTCTTTCCCCAGTGAGC	0.602													14	49					0	0	0.004990	0	0
PTPRH	5794	broad.mit.edu	37	19	55708105	55708105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55708105C>T	uc002qjq.2	-	10	2115	c.2042G>A	c.(2041-2043)GGA>GAA	p.G681E	PTPRH_uc010esv.2_Missense_Mutation_p.G503E|PTPRH_uc002qjs.2_Missense_Mutation_p.G688E	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	681	Extracellular (Potential).|Fibronectin type-III 8.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		CAAGTTGACTCCATAGCCCGC	0.592													6	42					0	0	0.001984	0	0
BRSK1	84446	broad.mit.edu	37	19	55816924	55816924	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55816924C>T	uc002qkg.2	+	16	2137	c.1860C>T	c.(1858-1860)ATC>ATT	p.I620I	BRSK1_uc002qkf.2_Silent_p.I636I|BRSK1_uc002qkh.2_Silent_p.I315I	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	620					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		TCAGCAGCATCAAAGCAGACA	0.557													59	226					0	0	0.003610	0	0
NAT14	57106	broad.mit.edu	37	19	55997951	55997951	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55997951C>T	uc002qle.1	+	3	329	c.249C>T	c.(247-249)GCC>GCT	p.A83A	SSC5D_uc002qlg.3_5'Flank	NM_020378	NP_065111	Q8WUY8	NAT14_HUMAN	N-acetyltransferase 14	83	N-acetyltransferase.				positive regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	integral to membrane|nucleus	DNA binding|N-acetyltransferase activity			central_nervous_system(1)|pancreas(1)	2	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0527)		GCCTGCGGGCCCGATGGGGCT	0.756													6	10					0	0	0.001984	0	0
NLRP9	338321	broad.mit.edu	37	19	56249719	56249719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56249719C>T	uc002qly.2	-	1	50	c.22G>A	c.(22-24)GAT>AAT	p.D8N		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	8	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AAGCCAAAATCCGAAAAAAAA	0.403													33	100					0	0	0.004289	0	0
NLRP11	204801	broad.mit.edu	37	19	56321696	56321696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56321696C>T	uc010ygf.1	-	5	991	c.280G>A	c.(280-282)GAG>AAG	p.E94K	NLRP11_uc002qlz.2_5'UTR|NLRP11_uc002qmb.2_5'UTR|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	94							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTGCATGCCTCCTGATTGCCT	0.363													7	31					0	0	0.006214	0	0
NLRP13	126204	broad.mit.edu	37	19	56443522	56443522	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56443522G>A	uc010ygg.1	-	1	181	c.156C>T	c.(154-156)TTC>TTT	p.F52F		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	52	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GGATACGCGGGAAGTGCCCCT	0.547													75	37					0	0	0.003610	0	0
NLRP5	126206	broad.mit.edu	37	19	56539352	56539352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56539352C>T	uc002qmj.2	+	7	1753	c.1753C>T	c.(1753-1755)CTC>TTC	p.L585F	NLRP5_uc002qmi.2_Missense_Mutation_p.L566F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	585	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTTCTTCCACCTCAGTCTCCA	0.537													10	21					0	0	0.001368	0	0
GALP	85569	broad.mit.edu	37	19	56688529	56688529	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56688529C>T	uc002qmo.1	+	2	134	c.52C>T	c.(52-54)CTG>TTG	p.L18L	GALP_uc010eti.2_Silent_p.L18L	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	18					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		CTTGCTGAGCCTGGCAGAGAC	0.622													7	29					0	0	0.004482	0	0
GALP	85569	broad.mit.edu	37	19	56696612	56696612	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:56696612C>T	uc002qmo.1	+	6	406	c.324C>T	c.(322-324)CCC>CCT	p.P108P	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	108					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		TGAAAATTCCCAAGGAGGAAG	0.393													20	15					0	0	0.002780	0	0
ZNF471	57573	broad.mit.edu	37	19	57037279	57037279	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:57037279A>T	uc002qnh.2	+	5	1976	c.1843A>T	c.(1843-1845)ATT>TTT	p.I615F		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	615	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		GTTATCCTTAATTTGTCATCA	0.428													20	48					0	0	0.002299	0	0
ZIM2	23619	broad.mit.edu	37	19	57286357	57286357	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:57286357A>C	uc002qnr.2	-	11	1665	c.1283T>G	c.(1282-1284)CTT>CGT	p.L428R	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.L224R|ZIM2_uc010ygr.1_Missense_Mutation_p.L224R|ZIM2_uc002qnq.2_Missense_Mutation_p.L428R|ZIM2_uc010etp.2_Missense_Mutation_p.L428R|ZIM2_uc010ygs.1_Missense_Mutation_p.L428R	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	428	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		GAGATGTTGAAGAAGATGCAC	0.453													18	42					0	0	0.006122	0	0
PEG3	5178	broad.mit.edu	37	19	57325127	57325127	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:57325127C>T	uc002qnu.2	-	7	5034	c.4683G>A	c.(4681-4683)GAG>GAA	p.E1561E	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.E1532E|PEG3_uc002qnv.2_Silent_p.E1561E|PEG3_uc002qnw.2_Silent_p.E1437E|PEG3_uc002qnx.2_Silent_p.E1435E|PEG3_uc010etr.2_Silent_p.E1561E|PEG3AS_uc010ets.1_RNA	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1561					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGAAGTACTTCTCATCAGCTT	0.542													22	75					0	0	0.001882	0	0
PEG3	5178	broad.mit.edu	37	19	57326893	57326893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:57326893C>T	uc002qnu.2	-	7	3268	c.2917G>A	c.(2917-2919)GAG>AAG	p.E973K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E944K|PEG3_uc002qnv.2_Missense_Mutation_p.E973K|PEG3_uc002qnw.2_Missense_Mutation_p.E849K|PEG3_uc002qnx.2_Missense_Mutation_p.E847K|PEG3_uc010etr.2_Missense_Mutation_p.E973K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	973	C2H2-type 5.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCCCCACACTCCTGACATTCA	0.468													31	103					0	0	0.003271	0	0
USP29	57663	broad.mit.edu	37	19	57641478	57641478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:57641478G>A	uc002qny.2	+	4	1791	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	479					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TTTCTTTAAAGAAGAAGAGCT	0.373													40	53					0	0	0.006999	0	0
ZNF550	162972	broad.mit.edu	37	19	58059242	58059243	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58059242_58059243CC>AA	uc002qpe.1	-	2	246_247	c.246_247GG>TT	c.(244-249)TTGGGG>TTTTGG	p.82_83LG>FW	ZNF547_uc002qpm.3_Intron|ZNF549_uc010eud.1_Intron|ZNF550_uc002qpc.2_RNA|ZNF550_uc010eue.1_RNA|ZNF550_uc002qpd.2_RNA	NM_001039654	NP_001034743	Q7Z398	ZN550_HUMAN	zinc finger protein 550	123_124					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTAGCTCTCCCCAACCTCGAAT	0.53													11	333					0	0	0.004672	0	0
ZNF416	55659	broad.mit.edu	37	19	58084958	58084958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58084958G>A	uc002qpf.2	-	4	485	c.314C>T	c.(313-315)TCC>TTC	p.S105F	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	105	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		CATGTCACAGGATTGAATCTT	0.522													25	28					0	0	0.003330	0	0
ZNF418	147686	broad.mit.edu	37	19	58439268	58439268	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58439268A>C	uc002qqs.1	-	4	573	c.281T>G	c.(280-282)ATT>AGT	p.I94S	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.I9S	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	94	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		CAAGTGCAAAATGTCTCCCAA	0.498													69	41					0	0	0.003610	0	0
ZNF606	80095	broad.mit.edu	37	19	58489985	58489985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58489985G>A	uc002qqw.2	-	7	2681	c.2063C>T	c.(2062-2064)TCC>TTC	p.S688F	ZNF606_uc010yhp.1_Missense_Mutation_p.S598F	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	688	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		ACAGTTAAAGGATCTTTCACA	0.403													46	24					0	0	0.003214	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58601523	58601523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58601523G>A	uc002qri.2	-	2	421	c.112C>T	c.(112-114)CCT>TCT	p.P38S	ZSCAN18_uc002qrj.3_Missense_Mutation_p.P38S|ZSCAN18_uc010yhs.1_Intron|ZSCAN18_uc002qrh.2_Missense_Mutation_p.P38S|ZSCAN18_uc010yht.1_Missense_Mutation_p.P94S|ZSCAN18_uc002qrk.1_Missense_Mutation_p.P38S|ZSCAN18_uc002qrl.2_Missense_Mutation_p.P38S	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	38					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GTCCTCTCAGGGATGGTCTCG	0.687													19	52					0	0	0.007413	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58601587	58601588	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58601587_58601588GG>AA	uc002qri.2	-	2	356_357	c.47_48CC>TT	c.(46-48)GCC>GTT	p.A16V	ZSCAN18_uc002qrj.3_Missense_Mutation_p.A16V|ZSCAN18_uc010yhs.1_Intron|ZSCAN18_uc002qrh.2_Missense_Mutation_p.A16V|ZSCAN18_uc010yht.1_Missense_Mutation_p.A72V|ZSCAN18_uc002qrk.1_Missense_Mutation_p.A16V|ZSCAN18_uc002qrl.2_Missense_Mutation_p.A16V	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	16					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GATCCGGCGGGGCTGGGGAGCT	0.629													15	60					0	0	0.004672	0	0
ZNF274	10782	broad.mit.edu	37	19	58723952	58723952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58723952C>T	uc002qrq.1	+	10	1864	c.1405C>T	c.(1405-1407)CAT>TAT	p.H469Y	ZNF274_uc002qrr.1_Missense_Mutation_p.H437Y|ZNF274_uc002qrs.1_Missense_Mutation_p.H364Y|ZNF274_uc010eum.1_Missense_Mutation_p.H228Y	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	469					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TGTAAAAATTCATCAGAAGAG	0.378													86	43					0	0	0.003610	0	0
ZNF324B	388569	broad.mit.edu	37	19	58966606	58966606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58966606C>T	uc002qsv.1	+	4	402	c.295C>T	c.(295-297)CCA>TCA	p.P99S	ZNF324B_uc002qsu.1_Missense_Mutation_p.P89S|ZNF324B_uc010euq.1_Missense_Mutation_p.P99S	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	99					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		ACGAGCTTTCCCAGATACCCC	0.552													77	77					0	0	0.003610	0	0
ZNF324B	388569	broad.mit.edu	37	19	58967057	58967057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:58967057C>T	uc002qsv.1	+	4	853	c.746C>T	c.(745-747)GCT>GTT	p.A249V	ZNF324B_uc002qsu.1_Missense_Mutation_p.A239V|ZNF324B_uc010euq.1_Missense_Mutation_p.A249V	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	249					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		CTGGGCGAGGCTCTTCACGCT	0.642													6	30					0	0	0.000673	0	0
SLC27A5	10998	broad.mit.edu	37	19	59010864	59010864	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:59010864G>A	uc002qtc.2	-	7	1772	c.1662C>T	c.(1660-1662)ACC>ACT	p.T554T	SLC27A5_uc002qtb.2_5'Flank	NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	554	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		CGGACCGGAAGGTGTCCCCGA	0.657													11	56					0	0	0.000673	0	0
SLC27A5	10998	broad.mit.edu	37	19	59022196	59022196	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:59022196G>A	uc002qtc.2	-	2	900	c.790C>T	c.(790-792)CTG>TTG	p.L264L		NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	264	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		GCAGCCCCCAGAGCCCCCACC	0.642													13	24					0	0	0.002450	0	0
SNTG2	54221	broad.mit.edu	37	2	1168853	1168853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:1168853G>A	uc002qwq.2	+	8	703	c.575G>A	c.(574-576)GGA>GAA	p.G192E	SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	192					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		CATCTGAACGGAAACTCCAGT	0.443													81	76					0	0	0.003610	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871204	8871204	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:8871204G>A	uc002qzc.2	-	30	5144	c.4962C>T	c.(4960-4962)TCC>TCT	p.S1654S	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Silent_p.S1555S|KIDINS220_uc002qzb.2_Silent_p.S508S	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1654	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AGCTGCATTCGGAAGGGCTTT	0.517													31	43					0	0	0.002096	0	0
GRHL1	29841	broad.mit.edu	37	2	10105480	10105480	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:10105480C>T	uc002raa.2	+	8	1251	c.1080C>T	c.(1078-1080)TCC>TCT	p.S360S	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.S171S|GRHL1_uc010yjb.1_Silent_p.S209S	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	360					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		ACGCCATTTCCTTCACATGGG	0.438													23	55					0	0	0.003954	0	0
HPCAL1	3241	broad.mit.edu	37	2	10560105	10560105	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:10560105C>T	uc002raj.2	+	3	596	c.222C>T	c.(220-222)ACC>ACT	p.T74T	HPCAL1_uc002rak.2_Silent_p.T74T|HPCAL1_uc002ral.2_Silent_p.T74T|HPCAL1_uc010exe.2_RNA|HPCAL1_uc010exf.2_Silent_p.T74T	NM_002149	NP_002140	P37235	HPCL1_HUMAN	hippocalcin-like 1	74	EF-hand 2.|1 (Potential).						calcium ion binding			pancreas(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.214)		CCTTCGACACCAACGGCGACG	0.602													16	57					0	0	0.006122	0	0
PDIA6	10130	broad.mit.edu	37	2	10927411	10927411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:10927411G>A	uc002rau.2	-	11	1291	c.1153C>T	c.(1153-1155)CTC>TTC	p.L385F	PDIA6_uc010yjg.1_Missense_Mutation_p.L382F|PDIA6_uc002rav.2_Missense_Mutation_p.L437F|PDIA6_uc010yjh.1_Missense_Mutation_p.L390F|PDIA6_uc002raw.2_Missense_Mutation_p.L433F	NM_005742	NP_005733	Q15084	PDIA6_HUMAN	protein disulfide isomerase A6 precursor	385					cell redox homeostasis|glycerol ether metabolic process|protein folding	endoplasmic reticulum lumen|ER-Golgi intermediate compartment|melanosome|plasma membrane	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.149)|OV - Ovarian serous cystadenocarcinoma(76;0.15)		AATTACCTGAGAAACTCGTTG	0.418													14	49					0	0	0.004990	0	0
GREB1	9687	broad.mit.edu	37	2	11728976	11728976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:11728976G>A	uc002rbk.1	+	10	1564	c.1264G>A	c.(1264-1266)GAG>AAG	p.E422K	GREB1_uc002rbn.1_Missense_Mutation_p.E422K|GREB1_uc002rbo.1_Missense_Mutation_p.E56K	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	422						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		ACGGGCATACGAGCAGTACGG	0.587													23	57					0	0	0.004656	0	0
NT5C1B	93034	broad.mit.edu	37	2	18736664	18736664	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:18736664G>A	uc010exr.2	-	9	1850	c.1746C>T	c.(1744-1746)TTC>TTT	p.F582F	NT5C1B_uc002rcy.2_3'UTR|RDH14_uc002rcx.3_Silent_p.F268F	NM_033253	NP_150278	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 2	Error:Variant_position_missing_in_Q96P26_after_alignment					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				ACACCAAATTGAAGAGTGGTT	0.453													45	113					0	0	0.002852	0	0
LAPTM4A	9741	broad.mit.edu	37	2	20232983	20232983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:20232983G>A	uc002rdm.2	-	7	1193	c.685C>T	c.(685-687)CCT>TCT	p.P229S	LAPTM4A_uc002rdn.2_Missense_Mutation_p.P187S	NM_014713	NP_055528	Q15012	LAP4A_HUMAN	lysosomal protein transmembrane 4 alpha	229	Poly-Pro.				transport	endomembrane system|Golgi apparatus|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGTAAGTAAGGAGGTGGTGGT	0.363													19	47					0	0	0.002299	0	0
APOB	338	broad.mit.edu	37	2	21225520	21225520	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:21225520C>T	uc002red.2	-	29	12902	c.12774G>A	c.(12772-12774)AGG>AGA	p.R4258R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4258					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTTTATGTTTCCTTAACTCGA	0.368													138	424					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21227961	21227961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:21227961C>T	uc002red.2	-	26	11907	c.11779G>A	c.(11779-11781)GAA>AAA	p.E3927K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3927					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CCATTTAGTTCATATTCTAGG	0.358													92	245					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21230565	21230565	+	Missense_Mutation	SNP	G	A	A	rs146377316		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:21230565G>A	uc002red.2	-	26	9303	c.9175C>T	c.(9175-9177)CGT>TGT	p.R3059C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3059					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity	p.R3059C(1)		ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATGGAAAACGAACTTTCAAA	0.403													124	375					0	0	0.003610	0	0
APOB	338	broad.mit.edu	37	2	21231534	21231534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:21231534G>A	uc002red.2	-	26	8334	c.8206C>T	c.(8206-8208)CTT>TTT	p.L2736F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2736				Missing (in Ref. 15; AAA51758).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGTATGTGAAGGTCAGGAACT	0.408													321	258					0	0	0.003610	0	0
NCOA1	8648	broad.mit.edu	37	2	24930670	24930670	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:24930670G>A	uc002rfk.2	+	11	2589	c.2331G>A	c.(2329-2331)AAG>AAA	p.K777K	NCOA1_uc010eye.2_Silent_p.K777K|NCOA1_uc002rfi.2_Silent_p.K626K|NCOA1_uc002rfj.2_Silent_p.K777K|NCOA1_uc002rfl.2_Silent_p.K777K	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	777									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGTGGAAAAGAAAGAACAGA	0.433			T	PAX3	alveolar rhadomyosarcoma								8	14					0	0	0.003080	0	0
ADCY3	109	broad.mit.edu	37	2	25141686	25141686	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:25141686G>A	uc002rfs.3	-	1	370	c.171C>T	c.(169-171)TTC>TTT	p.F57F	ADCY3_uc010ykm.1_Silent_p.F57F	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	57	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					ACTCCGGCACGAAAGTCAGCC	0.627													15	37					0	0	0.004990	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469513	25469513	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:25469513G>T	uc002rgc.2	-	10	1512	c.1255C>A	c.(1255-1257)CCT>ACT	p.P419T	DNMT3A_uc002rgd.2_Missense_Mutation_p.P419T|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Missense_Mutation_p.P230T	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	419					regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGCCCTTAGGGCCAGAAGGC	0.622			Mis|F|N|S		AML								12	44					4.36969e-10	6.34133e-10	0.001855	1	0
ASXL2	55252	broad.mit.edu	37	2	25965968	25965968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:25965968G>A	uc002rgs.2	-	12	3459	c.3238C>T	c.(3238-3240)CTC>TTC	p.L1080F	ASXL2_uc002rgt.1_Intron	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1080					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAACTGAGAGAAGATTCTGC	0.507													26	67					0	0	0.004656	0	0
ASXL2	55252	broad.mit.edu	37	2	26022340	26022340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:26022340G>A	uc002rgs.2	-	4	538	c.317C>T	c.(316-318)TCA>TTA	p.S106L		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	106	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGGGAATCTGACTGACCATC	0.458													41	99					0	0	0.006999	0	0
KIF3C	3797	broad.mit.edu	37	2	26204327	26204327	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:26204327G>A	uc002rgu.2	-	1	1117	c.460C>T	c.(460-462)CGA>TGA	p.R154*	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Nonsense_Mutation_p.R154*	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	154	Kinesin-motor.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCAGGTCTCGAATCTCTTCC	0.557													42	33					0	0	0.007835	0	0
C2orf39	92749	broad.mit.edu	37	2	26672863	26672863	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:26672863G>A	uc002rhg.2	+	12	1584	c.1510_splice	c.e12-1	p.G504_splice		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749												0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTCTCCCCAGGGGTTCCTCA	0.582													10	12					0	0	0.001368	0	0
C2orf39	92749	broad.mit.edu	37	2	26676345	26676345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:26676345C>T	uc002rhg.2	+	14	1921	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	616											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCCCACCCTCCCCCTGGGTC	0.358													28	16					0	0	0.005443	0	0
TCF23	150921	broad.mit.edu	37	2	27373113	27373113	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27373113G>A	uc010ylg.1	+	2	345	c.345G>A	c.(343-345)TTG>TTA	p.L115L		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	115	Helix-loop-helix motif.				cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCTCCAAGTTGGACGTGCTGG	0.706													31	56					0	0	0.002445	0	0
CAD	790	broad.mit.edu	37	2	27456983	27456983	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27456983C>T	uc002rji.2	+	22	3669	c.3507C>T	c.(3505-3507)ACC>ACT	p.T1169T	CAD_uc010eyw.2_Silent_p.T1106T	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1169	CPSase B.|ATP-grasp 2.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CGCTGGTGACCCCCCCACAAG	0.577													17	33					0	0	0.004007	0	0
CAD	790	broad.mit.edu	37	2	27461301	27461301	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27461301C>T	uc002rji.2	+	31	5025	c.4863C>T	c.(4861-4863)ATC>ATT	p.I1621I	CAD_uc010eyw.2_Silent_p.I1558I	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1621	DHOase (dihydroorotase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TTCCCCAGATCCTGCTAATTA	0.552													20	53					0	0	0.001216	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500708	27500708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27500708G>A	uc002rjl.1	+	4	618	c.200G>A	c.(199-201)GGG>GAG	p.G67E	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.G67E	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	67	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGAATCCAGGGAATGCTCAA	0.502													21	63					0	0	0.001523	0	0
GCKR	2646	broad.mit.edu	37	2	27722064	27722064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27722064G>A	uc002rky.2	+	6	550	c.484G>A	c.(484-486)GAA>AAA	p.E162K	GCKR_uc010ezd.2_Missense_Mutation_p.E162K|GCKR_uc010ylu.1_Intron	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	162	SIS 1.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					CGGGATTGAGGAACTGAAGAA	0.512													12	32					0	0	0.003163	0	0
GCKR	2646	broad.mit.edu	37	2	27730125	27730125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27730125C>T	uc002rky.2	+	13	1156	c.1090C>T	c.(1090-1092)CTC>TTC	p.L364F	GCKR_uc010ezd.2_Missense_Mutation_p.L362F|GCKR_uc010ylu.1_Missense_Mutation_p.L174F	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	364	SIS 2.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					CCGTGGCTTTCTCATTGGTGA	0.493													187	137					0	0	0.003610	0	0
GCKR	2646	broad.mit.edu	37	2	27741759	27741759	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27741759G>A	uc002rky.2	+	17	1593	c.1527G>A	c.(1525-1527)CGG>CGA	p.R509R	GCKR_uc010ezd.2_Silent_p.R507R|GCKR_uc010ylu.1_Silent_p.R319R	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	509					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TGGACCTTCGGATTAGCAACT	0.542													32	68					0	0	0.003755	0	0
GCKR	2646	broad.mit.edu	37	2	27745389	27745389	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27745389C>T	uc002rky.2	+	18	1701	c.1635C>T	c.(1633-1635)CCC>CCT	p.P545P	GCKR_uc010ezd.2_Silent_p.P543P|GCKR_uc010ylu.1_Silent_p.P355P	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	545					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TCCACTTTCCCCAGCCACTGT	0.527													29	88					0	0	0.007291	0	0
C2orf16	84226	broad.mit.edu	37	2	27802602	27802602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27802602G>A	uc002rkz.3	+	1	3214	c.3163G>A	c.(3163-3165)GAT>AAT	p.D1055N		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1055										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTCACAGAGTGATTCCCAGAC	0.463													34	84					0	0	0.004289	0	0
ZNF512	84450	broad.mit.edu	37	2	27824259	27824259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:27824259C>T	uc002rla.2	+	7	706	c.619C>T	c.(619-621)CGT>TGT	p.R207C	ZNF512_uc010ylv.1_Missense_Mutation_p.R128C|ZNF512_uc010ylw.1_Missense_Mutation_p.R178C|ZNF512_uc002rlb.2_Missense_Mutation_p.R128C|ZNF512_uc010ylx.1_Missense_Mutation_p.R128C|ZNF512_uc002rlc.2_Missense_Mutation_p.R128C|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Missense_Mutation_p.R100C	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	207	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAAACAACTTCGTTCACTGGC	0.378													24	82					0	0	0.001786	0	0
RBKS	64080	broad.mit.edu	37	2	28004589	28004589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:28004589C>T	uc002rlo.1	-	8	873	c.862G>A	c.(862-864)GAA>AAA	p.E288K	RBKS_uc010ezi.1_Missense_Mutation_p.E221K	NM_022128	NP_071411	Q9H477	RBSK_HUMAN	ribokinase	288					D-ribose metabolic process		ATP binding|ribokinase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					AGCATGTCTTCCAAGGACAGA	0.458													35	33					0	0	0.006999	0	0
PLB1	151056	broad.mit.edu	37	2	28828728	28828728	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:28828728C>T	uc002rmb.1	+	42	2970	c.2970C>T	c.(2968-2970)CTC>CTT	p.L990L	PLB1_uc010ezj.1_Silent_p.L979L|PLB1_uc002rme.1_Intron|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	990	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|3.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					AGGATGGGCTCCCAGATACGT	0.532													54	146					0	0	0.003610	0	0
PPP1CB	5500	broad.mit.edu	37	2	29006834	29006834	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29006834C>T	uc002rmg.2	+	6	742	c.582C>T	c.(580-582)GTC>GTT	p.V194V	PPP1CB_uc010ymj.1_Silent_p.V166V|PPP1CB_uc010yml.1_Silent_p.V166V|PPP1CB_uc002rmh.2_Silent_p.V194V|SPDYA_uc002rmi.2_5'UTR	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	194					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTACTGATGTCCCTGATACAG	0.348													19	19					0	0	0.001882	0	0
FAM179A	165186	broad.mit.edu	37	2	29221030	29221030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29221030C>T	uc010ezl.2	+	3	401	c.50C>T	c.(49-51)GCC>GTC	p.A17V	FAM179A_uc010ymm.1_Missense_Mutation_p.A17V	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	17							binding			ovary(3)|skin(1)	4						GTCCCCGTGGCCGTGTACTGC	0.632													8	6					0	0	0.003080	0	0
FAM179A	165186	broad.mit.edu	37	2	29222229	29222229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29222229C>T	uc010ezl.2	+	4	673	c.322C>T	c.(322-324)CCT>TCT	p.P108S	FAM179A_uc010ymm.1_Missense_Mutation_p.P108S	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	108							binding			ovary(3)|skin(1)	4						GGTGCTCCTCCCTTCTCCGGA	0.607													3	13					0	0	0.004672	0	0
C2orf71	388939	broad.mit.edu	37	2	29295648	29295648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29295648C>T	uc002rmt.1	-	1	1480	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	494					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						ATTTTGTCTTCCTCCTCCTCC	0.537													72	51					0	0	0.003610	0	0
ALK	238	broad.mit.edu	37	2	29754793	29754793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29754793G>A	uc002rmy.2	-	4	2049	c.1142C>T	c.(1141-1143)CCA>CTA	p.P381L		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	381	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	ATGCTTCCCTGGAGTGGGCAT	0.512			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				27	18					0	0	0.007291	0	0
ALK	238	broad.mit.edu	37	2	29917858	29917858	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:29917858G>A	uc002rmy.2	-	3	1717	c.810C>T	c.(808-810)TTC>TTT	p.F270F		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	270	MAM 1.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GCTCACAGGGGAAGTCAAAGC	0.562			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				21	65					0	0	0.002299	0	0
XDH	7498	broad.mit.edu	37	2	31572598	31572598	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:31572598T>C	uc002rnv.1	-	26	3002	c.2923A>G	c.(2923-2925)AGC>GGC	p.S975G		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	975					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TACTGAGAGCTTGCTAGGCAT	0.483													35	79					0	0	0.004878	0	0
SLC30A6	55676	broad.mit.edu	37	2	32445597	32445597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:32445597C>T	uc002roe.1	+	14	1238	c.1201C>T	c.(1201-1203)CTT>TTT	p.L401F	SLC30A6_uc002rof.1_Missense_Mutation_p.L441F|SLC30A6_uc010ymw.1_Missense_Mutation_p.L372F|SLC30A6_uc010ezr.1_Missense_Mutation_p.L378F|SLC30A6_uc002rog.1_Missense_Mutation_p.L204F|SLC30A6_uc010ezs.1_Missense_Mutation_p.L327F|SLC30A6_uc002roh.1_Missense_Mutation_p.L204F	NM_017964	NP_060434	Q6NXT4	ZNT6_HUMAN	solute carrier family 30 (zinc transporter),	401	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	zinc ion transmembrane transporter activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CCCAGTTATTCTTCTAAACAC	0.413													25	67					0	0	0.004656	0	0
LTBP1	4052	broad.mit.edu	37	2	33623611	33623611	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:33623611G>A	uc002ros.2	+	34	5168	c.5168G>A	c.(5167-5169)TGA>TAA	p.*1723*	LTBP1_uc002rot.2_Silent_p.*1397*|LTBP1_uc002rou.2_Silent_p.*1396*|LTBP1_uc002rov.2_Silent_p.*1343*|LTBP1_uc010ymz.1_Silent_p.*1354*|LTBP1_uc010yna.1_Silent_p.*1301*|LTBP1_uc010ynb.1_Silent_p.*620*	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1723					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GACCTGGAGTGAAACAGAATC	0.448													31	24					0	0	0.002836	0	0
VIT	5212	broad.mit.edu	37	2	36986174	36986174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:36986174C>T	uc002rpl.2	+	6	693	c.472C>T	c.(472-474)CCA>TCA	p.P158S	VIT_uc002rpk.2_Missense_Mutation_p.P151S|VIT_uc010ynf.1_Missense_Mutation_p.P151S|VIT_uc002rpm.2_Missense_Mutation_p.P151S|VIT_uc010ezv.2_Missense_Mutation_p.P151S|VIT_uc010ezw.2_Missense_Mutation_p.P151S	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	158						proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				ATCGAAAAGTCCAGCTGCCCA	0.408													25	80					0	0	0.005443	0	0
VIT	5212	broad.mit.edu	37	2	37035815	37035815	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:37035815C>T	uc002rpl.2	+	15	1811	c.1590C>T	c.(1588-1590)CTC>CTT	p.L530L	VIT_uc002rpm.2_Silent_p.L508L|VIT_uc010ezv.2_Silent_p.L486L|VIT_uc010ezw.2_Silent_p.L487L	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	515	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GCACCGTCCTCCAGTTTGTGA	0.597													10	30					0	0	0.000673	0	0
HEATR5B	54497	broad.mit.edu	37	2	37276937	37276937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:37276937G>A	uc002rpp.1	-	18	2651	c.2555C>T	c.(2554-2556)TCT>TTT	p.S852F		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	852	HEAT 1.						binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TGTCAGGGCAGATTTACGAAC	0.413													8	25					0	0	0.006214	0	0
CYP1B1	1545	broad.mit.edu	37	2	38298036	38298036	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:38298036C>T	uc002rqo.2	-	4	1864	c.1461G>A	c.(1459-1461)CTG>CTA	p.L487L		NM_000104	NP_000095	Q16678	CP1B1_HUMAN	cytochrome P450, family 1, subfamily B,	487					visual perception|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			ovary(1)|central_nervous_system(1)	2		all_hematologic(82;0.21)			Estrone(DB00655)	ACTGGTGAGCCAGGATGGAGA	0.443													17	34					0	0	0.001216	0	0
GALM	130589	broad.mit.edu	37	2	38903126	38903126	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:38903126T>A	uc002rqy.2	+	2	515	c.263T>A	c.(262-264)TTC>TAC	p.F88Y		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	88					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				AAAGGAACCTTCAAGGTGGAT	0.498													19	71					0	0	0.001523	0	0
GEMIN6	79833	broad.mit.edu	37	2	39009027	39009027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:39009027C>T	uc002rrc.2	+	3	613	c.497C>T	c.(496-498)TCC>TTC	p.S166F	GEMIN6_uc002rrb.2_RNA	NM_024775	NP_079051	Q8WXD5	GEMI6_HUMAN	gemin 6	166					ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly	Cajal body|cytosol|spliceosomal complex	protein binding				0		all_hematologic(82;0.21)				CTTACAGCTTCCCAATGAGAG	0.358													20	59					0	0	0.001523	0	0
MAP4K3	8491	broad.mit.edu	37	2	39505596	39505596	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:39505596C>A	uc002rro.2	-	24	1837	c.1746G>T	c.(1744-1746)GGG>GGT	p.G582G	MAP4K3_uc002rrp.2_Silent_p.G561G|MAP4K3_uc010yns.1_Silent_p.G135G	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	582	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				GGGTATAAATCCCTTCTTCGG	0.244													10	37					1.08611e-07	1.5734e-07	0.000978	1	0
EML4	27436	broad.mit.edu	37	2	42544633	42544633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:42544633G>A	uc002rsi.2	+	19	2385	c.2123G>A	c.(2122-2124)GGA>GAA	p.G708E	EML4_uc010fap.2_Missense_Mutation_p.G650E|EML4_uc002rsj.2_Missense_Mutation_p.G397E|EML4_uc010faq.2_Missense_Mutation_p.G53E|EML4_uc010ynv.1_Intron	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	708	WD 7.				microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						TCTGAAAATGGAAGAAAATAT	0.328			T	ALK	NSCLC								19	57					0	0	0.003954	0	0
HAAO	23498	broad.mit.edu	37	2	43015689	43015689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:43015689G>A	uc002rst.3	-	2	214	c.139C>T	c.(139-141)CAC>TAC	p.H47Y	HAAO_uc010ynw.1_Missense_Mutation_p.H47Y	NM_012205	NP_036337	P46952	3HAO_HUMAN	3-hydroxyanthranilate 3,4-dioxygenase	47	Domain A (catalytic) (By similarity).	Iron; catalytic (By similarity).			neuron homeostasis|pyridine nucleotide biosynthetic process|quinolinate biosynthetic process|response to cadmium ion|response to zinc ion|tryptophan catabolic process	cytosol|soluble fraction	3-hydroxyanthranilate 3,4-dioxygenase activity|electron carrier activity|ferrous iron binding			ovary(1)	1						TCTTCGATGTGATAGTCCTTC	0.587													35	25					0	0	0.004878	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43926862	43926862	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:43926862C>T	uc010yny.1	+	8	848	c.765C>T	c.(763-765)ACC>ACT	p.T255T	PLEKHH2_uc002rte.3_Silent_p.T255T|PLEKHH2_uc002rtf.3_Silent_p.T254T	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	255						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TGCATCAAACCCCTTGTGGCT	0.443													161	132					0	0	0.003610	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43947864	43947864	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:43947864T>A	uc010yny.1	+	16	2600	c.2517T>A	c.(2515-2517)TAT>TAA	p.Y839*	PLEKHH2_uc002rtf.3_Nonsense_Mutation_p.Y838*	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	839	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AGACATTATATTATTTTCGGA	0.318													326	246					0	0	0.003610	0	0
LRPPRC	10128	broad.mit.edu	37	2	44201417	44201417	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:44201417A>T	uc002rtr.2	-	9	1085	c.1027T>A	c.(1027-1029)TTA>ATA	p.L343I	LRPPRC_uc010yob.1_Missense_Mutation_p.L243I|LRPPRC_uc010faw.1_Missense_Mutation_p.L317I	NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	343					mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ACTAAAAGTAAAATGAGGTTC	0.358													112	286					0	0	0.003610	0	0
PRKCE	5581	broad.mit.edu	37	2	46411915	46411916	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:46411915_46411916CC>GT	uc002rut.2	+	15	2306_2307	c.2109_2110CC>GT	c.(2107-2112)ACCCGG>ACGTGG	p.R704W		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	704	AGC-kinase C-terminal.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			AAGACTTTACCCGGGAAGAGCC	0.49													23	56					0	0	0.004672	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739724	46739724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:46739724C>T	uc002ruy.2	-	2	1241	c.127G>A	c.(127-129)GGA>AGA	p.G43R	ATP6V1E2_uc002ruz.2_Missense_Mutation_p.G43R	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	43					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			ACGAGGCGTCCTTTCTCAATG	0.438													77	57					0	0	0.003610	0	0
SOCS5	9655	broad.mit.edu	37	2	46987053	46987053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:46987053C>T	uc002rvf.2	+	2	1548	c.1384C>T	c.(1384-1386)CCC>TCC	p.P462S	SOCS5_uc010yoe.1_Missense_Mutation_p.P431S|SOCS5_uc002rvg.2_Missense_Mutation_p.P462S	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	462	SH2.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TTATAAAGATCCCAGTTCGTG	0.433													49	30					0	0	0.003610	0	0
TTC7A	57217	broad.mit.edu	37	2	47221609	47221609	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:47221609C>T	uc002rvo.2	+	7	1325	c.957C>T	c.(955-957)TTC>TTT	p.F319F	TTC7A_uc002rvm.2_Silent_p.F285F|TTC7A_uc002rvn.1_Silent_p.F200F|TTC7A_uc010fbb.2_Silent_p.F319F|TTC7A_uc010fbc.2_Intron|TTC7A_uc002rvp.2_Silent_p.F200F|TTC7A_uc002rvq.2_Silent_p.F59F|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	319							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			AGAGTTCTTTCGCCACTCAGG	0.597													33	67					0	0	0.002096	0	0
TTC7A	57217	broad.mit.edu	37	2	47288087	47288087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:47288087G>A	uc002rvo.2	+	19	2700	c.2332G>A	c.(2332-2334)GGC>AGC	p.G778S	TTC7A_uc002rvm.2_Missense_Mutation_p.G744S|TTC7A_uc010fbb.2_Missense_Mutation_p.G802S|TTC7A_uc010fbc.2_Missense_Mutation_p.G424S|TTC7A_uc002rvp.2_Missense_Mutation_p.G659S|TTC7A_uc002rvq.2_Missense_Mutation_p.G518S|TTC7A_uc002rvr.2_Missense_Mutation_p.G227S	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	778	TPR 7.						binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			GAACCCAGATGGCGTGCGCAT	0.627													4	14					0	0	0.000248	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48807965	48807966	+	Missense_Mutation	DNP	CC	TT	TT	rs151071170	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:48807965_48807966CC>TT	uc010yol.1	+	1	240_241	c.193_194CC>TT	c.(193-195)CCC>TTC	p.P65F	STON1_uc002rwo.3_Missense_Mutation_p.P65F|STON1_uc010fbm.2_Missense_Mutation_p.P65F|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P65F|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.P65F	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	65					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCTCTCCTCCCCCATTGTAGAT	0.505													36	100					0	0	0.004672	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873624	48873624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:48873624G>A	uc010yol.1	+	5	2439	c.2392G>A	c.(2392-2394)GTG>ATG	p.V798M	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.V845M|GTF2A1L_uc002rws.1_Missense_Mutation_p.V141M|GTF2A1L_uc010yom.1_Missense_Mutation_p.V107M|GTF2A1L_uc002rwt.2_Missense_Mutation_p.V141M	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	798					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACCAATTATGGTGACAGAGAC	0.358													13	41					0	0	0.004007	0	0
TSPYL6	388951	broad.mit.edu	37	2	54483008	54483008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:54483008G>A	uc002rxr.2	-	1	402	c.281C>T	c.(280-282)CCC>CTC	p.P94L	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	94					nucleosome assembly	nucleus					0						GCCCTCCGCGGGTGGTGGAGT	0.617													10	33					0	0	0.006214	0	0
CCDC88A	55704	broad.mit.edu	37	2	55566617	55566617	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:55566617G>A	uc002ryv.2	-	13	2343	c.1501C>T	c.(1501-1503)CAA>TAA	p.Q501*	CCDC88A_uc010yoz.1_Nonsense_Mutation_p.Q501*|CCDC88A_uc010ypa.1_Nonsense_Mutation_p.Q501*|CCDC88A_uc010ypb.1_Nonsense_Mutation_p.Q403*	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	501	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						CTGAGCCTTTGATTTTCTTTT	0.299													13	12					0	0	0.002450	0	0
SPRED2	200734	broad.mit.edu	37	2	65540704	65540704	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:65540704G>A	uc002sdr.3	-	6	1723	c.1188C>T	c.(1186-1188)CCC>CCT	p.P396P	SPRED2_uc010fcw.2_Silent_p.P393P	NM_181784	NP_861449	Q7Z698	SPRE2_HUMAN	sprouty-related protein with EVH-1 domain 2	396	SPR.				inactivation of MAPK activity|multicellular organismal development	transport vesicle membrane	stem cell factor receptor binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AGGCCCGAAGGGGCAGGTAAC	0.597													11	30					0	0	0.000978	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049724	69049724	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:69049724A>G	uc002seu.2	+	10	1814	c.1450A>G	c.(1450-1452)AGA>GGA	p.R484G	ARHGAP25_uc010fdg.2_Missense_Mutation_p.R485G|ARHGAP25_uc010yql.1_Missense_Mutation_p.R445G|ARHGAP25_uc002sew.2_Missense_Mutation_p.R477G|ARHGAP25_uc002sex.2_Missense_Mutation_p.R478G|ARHGAP25_uc002sey.2_Missense_Mutation_p.R211G	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	484					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AGGGCACAGGAGAACGATGTC	0.537													29	76					0	0	0.007291	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69053182	69053182	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:69053182G>A	uc002seu.2	+	11	2158	c.1794G>A	c.(1792-1794)AAG>AAA	p.K598K	ARHGAP25_uc010fdg.2_Silent_p.K599K|ARHGAP25_uc010yql.1_Silent_p.K559K|ARHGAP25_uc002sew.2_Silent_p.K591K|ARHGAP25_uc002sex.2_Silent_p.K592K|ARHGAP25_uc002sey.2_Silent_p.K325K	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	598	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						AACTGGAGAAGGAAAAGAAGA	0.473													22	71					0	0	0.001882	0	0
BMP10	27302	broad.mit.edu	37	2	69093648	69093648	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:69093648G>A	uc002sez.1	-	2	549	c.390C>T	c.(388-390)TTC>TTT	p.F130F		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	130					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						TGGACACATTGAAGAGGAGGG	0.453													26	23					0	0	0.007291	0	0
NFU1	27247	broad.mit.edu	37	2	69650762	69650762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:69650762G>A	uc002sfk.2	-	3	453	c.254C>T	c.(253-255)ACC>ATC	p.T85I	NFU1_uc002sfj.2_Missense_Mutation_p.T61I|NFU1_uc002sfl.2_Intron|NFU1_uc002sfm.2_Intron|NFU1_uc010fdi.2_Intron|NFU1_uc002sfn.1_Missense_Mutation_p.T85I	NM_001002755	NP_001002755	Q9UMS0	NFU1_HUMAN	HIRA interacting protein 5 isoform 2	85					iron-sulfur cluster assembly	cytosol|mitochondrion|nucleus	4 iron, 4 sulfur cluster binding|iron ion binding|protein binding				0						AAAATCCATGGTCCTTGTCTC	0.373													7	26					0	0	0.006214	0	0
ASPRV1	151516	broad.mit.edu	37	2	70187890	70187890	+	Missense_Mutation	SNP	G	A	A	rs143860688		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:70187890G>A	uc002sfz.3	-	1	1508	c.931C>T	c.(931-933)CGC>TGC	p.R311C		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	311	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						GGCAGAAGGCGAAACTTCTTC	0.567													31	96					0	0	0.003755	0	0
ADD2	119	broad.mit.edu	37	2	70931543	70931543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:70931543C>T	uc002sgz.2	-	4	697	c.232G>A	c.(232-234)GGG>AGG	p.G78R	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.G78R|ADD2_uc002sha.2_Missense_Mutation_p.G78R|ADD2_uc002sgx.2_Missense_Mutation_p.G78R|ADD2_uc010fdt.1_Missense_Mutation_p.G78R|ADD2_uc002shc.1_Missense_Mutation_p.G78R|ADD2_uc002shd.1_Missense_Mutation_p.G78R|ADD2_uc010fdu.1_Missense_Mutation_p.G94R	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	78					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GAGTTGTTCCCCTTCTTCATC	0.597													21	36					0	0	0.002299	0	0
ZNF638	27332	broad.mit.edu	37	2	71576164	71576164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:71576164C>T	uc002shx.2	+	2	399	c.80C>T	c.(79-81)CCT>CTT	p.P27L	ZNF638_uc010fec.2_Missense_Mutation_p.P133L|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.P27L|ZNF638_uc002shy.2_Missense_Mutation_p.P27L|ZNF638_uc002shz.2_Missense_Mutation_p.P27L|ZNF638_uc002sia.2_Missense_Mutation_p.P27L|ZNF638_uc002sib.1_Missense_Mutation_p.P27L	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	27					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						GGGATGAGGCCTCCAGGACCA	0.507													16	79					0	0	0.003163	0	0
DYSF	8291	broad.mit.edu	37	2	71766337	71766337	+	Missense_Mutation	SNP	C	T	T	rs139258703		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:71766337C>T	uc002sie.2	+	16	1824	c.1448C>T	c.(1447-1449)TCG>TTG	p.S483L	DYSF_uc010feg.2_Missense_Mutation_p.S514L|DYSF_uc010feh.2_Missense_Mutation_p.S483L|DYSF_uc002sig.3_Missense_Mutation_p.S483L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.S483L|DYSF_uc010fef.2_Missense_Mutation_p.S514L|DYSF_uc010fei.2_Missense_Mutation_p.S514L|DYSF_uc010fek.2_Missense_Mutation_p.S515L|DYSF_uc010fej.2_Missense_Mutation_p.S484L|DYSF_uc010fel.2_Missense_Mutation_p.S484L|DYSF_uc010feo.2_Missense_Mutation_p.S515L|DYSF_uc010fem.2_Missense_Mutation_p.S484L|DYSF_uc010fen.2_Missense_Mutation_p.S515L|DYSF_uc002sif.2_Missense_Mutation_p.S484L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	483	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CTGAGTATGTCGAAAATCTCT	0.552													18	64					0	0	0.001216	0	0
DYSF	8291	broad.mit.edu	37	2	71797810	71797810	+	Missense_Mutation	SNP	G	A	A	rs150877497		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:71797810G>A	uc002sie.2	+	29	3489	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	DYSF_uc010feg.2_Missense_Mutation_p.R1069Q|DYSF_uc010feh.2_Missense_Mutation_p.R1024Q|DYSF_uc002sig.3_Missense_Mutation_p.R1024Q|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1038Q|DYSF_uc010fef.2_Missense_Mutation_p.R1055Q|DYSF_uc010fei.2_Missense_Mutation_p.R1055Q|DYSF_uc010fek.2_Missense_Mutation_p.R1056Q|DYSF_uc010fej.2_Missense_Mutation_p.R1025Q|DYSF_uc010fel.2_Missense_Mutation_p.R1025Q|DYSF_uc010feo.2_Missense_Mutation_p.R1070Q|DYSF_uc010fem.2_Missense_Mutation_p.R1039Q|DYSF_uc010fen.2_Missense_Mutation_p.R1056Q|DYSF_uc002sif.2_Missense_Mutation_p.R1039Q	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1038	Cytoplasmic (Potential).|Arg-rich.		R -> Q (in LGMD2B; uncertain pathogenicity).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TACACACACCGACGGCGGCGC	0.642													7	23					0	0	0.004482	0	0
DYSF	8291	broad.mit.edu	37	2	71825763	71825763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:71825763C>T	uc002sie.2	+	33	3966	c.3590C>T	c.(3589-3591)CCC>CTC	p.P1197L	DYSF_uc010feg.2_Missense_Mutation_p.P1228L|DYSF_uc010feh.2_Missense_Mutation_p.P1183L|DYSF_uc002sig.3_Missense_Mutation_p.P1183L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1197L|DYSF_uc010fef.2_Missense_Mutation_p.P1214L|DYSF_uc010fei.2_Missense_Mutation_p.P1214L|DYSF_uc010fek.2_Missense_Mutation_p.P1215L|DYSF_uc010fej.2_Missense_Mutation_p.P1184L|DYSF_uc010fel.2_Missense_Mutation_p.P1184L|DYSF_uc010feo.2_Missense_Mutation_p.P1229L|DYSF_uc010fem.2_Missense_Mutation_p.P1198L|DYSF_uc010fen.2_Missense_Mutation_p.P1215L|DYSF_uc002sif.2_Missense_Mutation_p.P1198L|DYSF_uc010yqy.1_Missense_Mutation_p.P78L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1197	Cytoplasmic (Potential).|C2 4.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACCCTTAACCCCACCTGGGAC	0.597													10	37					0	0	0.006214	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315384	73315384	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:73315384C>T	uc002siu.3	-	3	1603	c.1362G>A	c.(1360-1362)CGG>CGA	p.R454R	RAB11FIP5_uc002sit.3_Silent_p.R376R	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	454					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						GTTCCTCCTTCCGGGCTCCCT	0.652													59	54					0	0	0.003610	0	0
DGUOK	1716	broad.mit.edu	37	2	74173931	74173931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:74173931C>T	uc002sjx.2	+	3	426	c.341C>T	c.(340-342)TCC>TTC	p.S114F	DGUOK_uc002sjy.2_Missense_Mutation_p.S114F|DGUOK_uc002sjz.2_RNA	NM_080916	NP_550438	Q16854	DGUOK_HUMAN	deoxyguanosine kinase isoform a precursor	114					guanosine metabolic process|purine base metabolic process|purine deoxyribonucleoside metabolic process|purine-containing compound salvage	mitochondrial matrix	ATP binding|deoxyguanosine kinase activity|phosphotransferase activity, alcohol group as acceptor				0						CAGACATTTTCCTTTTTGAGC	0.507													12	37					0	0	0.000978	0	0
TET3	200424	broad.mit.edu	37	2	74273719	74273719	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:74273719C>T	uc002skb.3	+	1	270	c.270C>T	c.(268-270)AAC>AAT	p.N90N	TET3_uc010fez.1_Silent_p.N90N	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	90							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						AAACCTTCAACCGTGAGATGA	0.617													7	28					0	0	0.001984	0	0
TET3	200424	broad.mit.edu	37	2	74274974	74274975	+	Nonsense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:74274974_74274975CC>TA	uc002skb.3	+	1	1525_1526	c.1525_1526CC>TA	c.(1525-1527)CCA>TAA	p.P509*	TET3_uc010fez.1_Nonsense_Mutation_p.P509*	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	509							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCAGGCTCATCCACCGGCCCCT	0.644													6	8					0	0	0.004672	0	0
C2orf65	130951	broad.mit.edu	37	2	74842118	74842119	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:74842118_74842119CC>TT	uc002smy.2	-	3	515_516	c.398_399GG>AA	c.(397-399)AGG>AAA	p.R133K	C2orf65_uc010ysa.1_Missense_Mutation_p.R133K|C2orf65_uc002smz.2_Missense_Mutation_p.R133K	NM_138804	NP_620159	Q8TC57	CB065_HUMAN	hypothetical protein LOC130951	133					chromatin assembly|female gamete generation|RNA processing|spermatogenesis	integral to membrane				ovary(1)|pancreas(1)	2						TCAGAGCTGCCCTTGTGGTCAC	0.49													20	52					0	0	0.004672	0	0
TACR1	6869	broad.mit.edu	37	2	75425727	75425727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:75425727G>A	uc002sng.2	-	1	919	c.334C>T	c.(334-336)CCC>TCC	p.P112S	TACR1_uc002snh.2_Missense_Mutation_p.P112S	NM_001058	NP_001049	P25103	NK1R_HUMAN	tachykinin receptor 1 isoform long	112	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|detection of abiotic stimulus|mechanosensory behavior	integral to plasma membrane	protein binding			ovary(1)	1					Aprepitant(DB00673)|Ketamine(DB01221)|Vapreotide(DB04894)	GCGGCGATGGGAAAGAAGTTG	0.498													20	61					0	0	0.001882	0	0
RETSAT	54884	broad.mit.edu	37	2	85577173	85577173	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:85577173G>A	uc002spd.2	-	4	980	c.789C>T	c.(787-789)TTC>TTT	p.F263F	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Silent_p.F202F|RETSAT_uc010fgf.2_Intron	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	263					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	CGTAAGTGGGGAAGATGTAGC	0.597													20	18					0	0	0.001216	0	0
ATOH8	84913	broad.mit.edu	37	2	85982046	85982046	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:85982046C>A	uc002sqn.2	+	1	1138	c.734C>A	c.(733-735)ACC>AAC	p.T245N	ATOH8_uc002sqm.3_Missense_Mutation_p.T245N	NM_032827	NP_116216	Q96SQ7	ATOH8_HUMAN	atonal homolog 8	245	Helix-loop-helix motif.				cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CGGGTGCACACCATCAGCGCA	0.706													15	27					1.05317e-09	1.52798e-09	0.002450	1	0
POLR1A	25885	broad.mit.edu	37	2	86276287	86276287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:86276287G>A	uc002sqs.2	-	17	2850	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	POLR1A_uc010ytb.1_Missense_Mutation_p.P190L	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	824					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						CCTTACCTGGGGCCCGCAGTG	0.557													38	94					0	0	0.003610	0	0
IMMT	10989	broad.mit.edu	37	2	86400787	86400788	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:86400787_86400788GG>AA	uc002sqz.3	-	4	794_795	c.406_407CC>TT	c.(406-408)CCA>TTA	p.P136L	IMMT_uc002sqy.3_5'Flank|IMMT_uc002srb.3_Missense_Mutation_p.P136L|IMMT_uc002sra.3_Missense_Mutation_p.P136L|IMMT_uc010ytd.1_Missense_Mutation_p.P136L|IMMT_uc010yte.1_Missense_Mutation_p.P136L|IMMT_uc002src.1_5'Flank|IMMT_uc002srd.2_Missense_Mutation_p.P136L|IMMT_uc002sre.3_Missense_Mutation_p.P136L|IMMT_uc010ytf.1_Missense_Mutation_p.P136L|IMMT_uc010fgs.1_Missense_Mutation_p.P136L	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	136	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						TGCTGAAGCTGGAGTATCTCCC	0.302													13	10					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	95601090	95601090	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:95601090C>T	uc002stv.1	-	2		c.159G>A								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		CTTCAAGACTCTCTTGTAAAT	0.333													14	13					0	0	0.003163	0	0
SNRNP200	23020	broad.mit.edu	37	2	96950252	96950252	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:96950252G>A	uc002svu.2	-	31	4322	c.4236C>T	c.(4234-4236)ACC>ACT	p.T1412T	SNRNP200_uc002svt.2_Silent_p.T22T|SNRNP200_uc010yuj.1_RNA|SNRNP200_uc002svv.1_5'UTR	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1412	Helicase ATP-binding 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GGTCTGTGCTGGTCTCGCCTG	0.557													44	45					0	0	0.003214	0	0
TMEM131	23505	broad.mit.edu	37	2	98392351	98392351	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:98392351G>A	uc002syh.3	-	32	4504	c.4275C>T	c.(4273-4275)ACC>ACT	p.T1425T		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1425	Lys-rich.					integral to membrane				ovary(4)|central_nervous_system(2)	6						TCTCTGTGGTGGTGGAGGAGC	0.517													9	39					0	0	0.004482	0	0
VWA3B	200403	broad.mit.edu	37	2	98846523	98846523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:98846523G>A	uc002syo.2	+	16	2425	c.2161G>A	c.(2161-2163)GAA>AAA	p.E721K	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.E240K|VWA3B_uc002sym.2_Missense_Mutation_p.E721K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.E378K|VWA3B_uc002syp.1_Missense_Mutation_p.E113K|VWA3B_uc002syq.1_5'UTR|VWA3B_uc002syr.1_Missense_Mutation_p.E38K	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	721										ovary(3)|large_intestine(2)|skin(1)	6						GCATCAAAAGGAAATCTGTTC	0.358													32	23					0	0	0.006230	0	0
CNGA3	1261	broad.mit.edu	37	2	99012539	99012539	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:99012539G>A	uc002syt.2	+	8	1323	c.906G>A	c.(904-906)AGG>AGA	p.R302R	CNGA3_uc002syu.2_Silent_p.R284R|CNGA3_uc010fij.2_Silent_p.R306R	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	302					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						ATATGTTCAGGATTGGGAACT	0.468													50	33					0	0	0.003610	0	0
INPP4A	3631	broad.mit.edu	37	2	99155368	99155368	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:99155368C>T	uc002syy.2	+	9	987	c.594C>T	c.(592-594)GTC>GTT	p.V198V	INPP4A_uc010yvj.1_Silent_p.V198V|INPP4A_uc010yvk.1_Silent_p.V198V|INPP4A_uc002syx.2_Silent_p.V198V|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	198					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						TTCTTCCTGTCGATGAGAGCT	0.428													5	15					0	0	0.003080	0	0
REV1	51455	broad.mit.edu	37	2	100058907	100058907	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:100058907G>A	uc002tad.2	-	5	587	c.375C>T	c.(373-375)TCC>TCT	p.S125S	REV1_uc002tac.2_Silent_p.S125S|REV1_uc002tae.1_Silent_p.S104S	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	125	BRCT.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						ATGGAATGTAGGAGAGGAGTC	0.443								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					17	48					0	0	0.004990	0	0
TBC1D8	11138	broad.mit.edu	37	2	101666995	101666995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:101666995G>A	uc010fiv.2	-	5	826	c.695C>T	c.(694-696)TCC>TTC	p.S232F	TBC1D8_uc010yvw.1_Missense_Mutation_p.S247F|TBC1D8_uc002tau.3_5'UTR	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	232					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						CAGGAACATGGAGAAGTCACG	0.512													4	18					0	0	0.000248	0	0
IL1R1	3554	broad.mit.edu	37	2	102782592	102782592	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:102782592T>G	uc002tbq.2	+	6	824	c.506T>G	c.(505-507)CTT>CGT	p.L169R	IL1R1_uc010fix.2_Missense_Mutation_p.L169R|IL1R1_uc002tbp.2_Missense_Mutation_p.L169R|IL1R1_uc002tbr.2_Missense_Mutation_p.L169R	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	169	Extracellular (Potential).|Ig-like C2-type 2.				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	CCTCTACTTCTTGACAATATA	0.398													23	17					0	0	0.003330	0	0
IL18RAP	8807	broad.mit.edu	37	2	103040547	103040547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:103040547C>T	uc002tbx.2	+	4	831	c.347C>T	c.(346-348)CCA>CTA	p.P116L	IL18RAP_uc010fiz.2_Intron	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	116	Extracellular (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						TTTTTGACCCCAGGGGTGAAT	0.373													24	14					0	0	0.003330	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236460	103236461	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:103236460_103236461CC>TT	uc002tca.2	+	1	295_296	c.153_154CC>TT	c.(151-156)AGCCCT>AGTTCT	p.P52S		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	52	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						GCCCGCCTAGCCCTGCGAGCGT	0.53													8	11					0	0	0.004672	0	0
SLC9A2	6549	broad.mit.edu	37	2	103317575	103317575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:103317575G>A	uc002tca.2	+	8	1775	c.1633G>A	c.(1633-1635)GAA>AAA	p.E545K		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	545	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TTTGATTCGGGAAAACCAACC	0.318													19	32					0	0	0.006122	0	0
SLC9A2	6549	broad.mit.edu	37	2	103322376	103322376	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:103322376G>A	uc002tca.2	+	11	2191	c.2049G>A	c.(2047-2049)AGG>AGA	p.R683R		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	683	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TACAAAAGAGGAGGACTATTT	0.294													12	33					0	0	0.001855	0	0
TMEM182	130827	broad.mit.edu	37	2	103414344	103414344	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:103414344C>T	uc010fjb.2	+	4	541	c.354C>T	c.(352-354)GTC>GTT	p.V118V	TMEM182_uc002tcc.3_Silent_p.V75V|TMEM182_uc002tcd.3_Silent_p.V22V|TMEM182_uc010ywe.1_RNA	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	118	Helical; (Potential).					integral to membrane					0						TCTGGGCAGTCCTGATGCTCC	0.488													21	38					0	0	0.003954	0	0
GPR45	11250	broad.mit.edu	37	2	105858877	105858877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:105858877G>A	uc002tco.1	+	1	678	c.562G>A	c.(562-564)GAG>AAG	p.E188K		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	188	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GGGCTACACGGAGCTCCCCGC	0.682													13	7					0	0	0.001855	0	0
RGPD3	653489	broad.mit.edu	37	2	107041678	107041678	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:107041678G>A	uc010ywi.1	-	20	2802	c.2745C>T	c.(2743-2745)TCC>TCT	p.S915S		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	915					intracellular transport		binding			ovary(1)	1						ACACAGGGATGGAAAATCCTT	0.363													31	147					0	0	0.003214	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107446620	107446620	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:107446620T>C	uc002tdq.2	-	5	1339	c.1220A>G	c.(1219-1221)TAC>TGC	p.Y407C	ST6GAL2_uc002tdr.2_Missense_Mutation_p.Y407C|ST6GAL2_uc002tds.3_Missense_Mutation_p.Y407C	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	407	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						ATGAAGAATGTAAAATGGCTG	0.378													23	60					0	0	0.001882	0	0
RGPD4	285190	broad.mit.edu	37	2	108476199	108476199	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:108476199G>A	uc010ywk.1	+	12	1738	c.1656G>A	c.(1654-1656)TTG>TTA	p.L552L	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	552					intracellular transport		binding			skin(2)	2						CAGCAAAATTGAGACTTTTAG	0.358													31	91					0	0	0.001512	0	0
SLC5A7	60482	broad.mit.edu	37	2	108627177	108627177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:108627177G>A	uc002tdv.2	+	9	1879	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K	SLC5A7_uc010ywm.1_Missense_Mutation_p.E288K|SLC5A7_uc010fjj.2_Missense_Mutation_p.E535K|SLC5A7_uc010ywn.1_Missense_Mutation_p.E422K	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	535	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TGTCAAAAATGAAAATATTAA	0.373													15	18					0	0	0.003163	0	0
RANBP2	5903	broad.mit.edu	37	2	109383182	109383182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:109383182C>T	uc002tem.3	+	20	6313	c.6187C>T	c.(6187-6189)CTC>TTC	p.L2063F		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2063	RanBD1 2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						CTTAAAAATTCTCAAAAACGA	0.383													138	321					0	0	0.003610	0	0
MALL	7851	broad.mit.edu	37	2	110849249	110849249	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:110849249G>A	uc002tfk.2	-	2	978	c.204C>T	c.(202-204)CTC>CTT	p.L68L	MALL_uc010fju.2_Intron	NM_005434	NP_005425	Q13021	MALL_HUMAN	mal, T-cell differentiation protein-like	68	MARVEL.|Helical; (Potential).				cholesterol homeostasis	clathrin-coated vesicle|Golgi membrane|integral to membrane|membrane raft|plasma membrane	protein binding			ovary(1)|skin(1)	2				Epithelial(1;0.0546)|STAD - Stomach adenocarcinoma(1;0.18)		TCAAGGAGATGAGAAACGAGG	0.468													11	61					0	0	0.001855	0	0
RGPD5	84220	broad.mit.edu	37	2	113147112	113147112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113147112G>A	uc002ths.1	-	20	3487	c.3410C>T	c.(3409-3411)TCT>TTT	p.S1137F	RGPD8_uc010fkk.1_Missense_Mutation_p.S997F|RGPD5_uc002tht.1_Missense_Mutation_p.S388F	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1137	RanBD1 1.				intracellular transport	cytoplasm	binding				0						ATCACCATCAGAGAAATCACT	0.453													25	266					0	0	0.005524	0	0
POLR1B	84172	broad.mit.edu	37	2	113310248	113310248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113310248C>T	uc002thw.2	+	7	1593	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	POLR1B_uc010fkn.2_Missense_Mutation_p.S282F|POLR1B_uc002thx.2_Missense_Mutation_p.S199F|POLR1B_uc010fko.2_Missense_Mutation_p.S338F|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Missense_Mutation_p.S376F|POLR1B_uc002thy.2_Missense_Mutation_p.S199F|POLR1B_uc010yxo.1_Missense_Mutation_p.S115F	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	338					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						CACTTGAAATCCAATACTGAA	0.353													10	60					0	0	0.006214	0	0
PSD4	23550	broad.mit.edu	37	2	113940778	113940778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113940778C>T	uc002tjc.2	+	2	928	c.745C>T	c.(745-747)CCC>TCC	p.P249S	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.P248S|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	249					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTTCAGCAACCCCCTCTTCCT	0.597													23	20					0	0	0.002780	0	0
PSD4	23550	broad.mit.edu	37	2	113943480	113943480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113943480G>A	uc002tjc.2	+	5	1459	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	PSD4_uc002tjd.2_Missense_Mutation_p.E47K|PSD4_uc002tje.2_Intron|PSD4_uc002tjf.2_Missense_Mutation_p.E47K	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	426					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						ACACCCCCAGGAATCTCTTCC	0.642													12	10					0	0	0.001368	0	0
PSD4	23550	broad.mit.edu	37	2	113953731	113953731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113953731G>A	uc002tjc.2	+	12	2416	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	PSD4_uc002tjd.2_Missense_Mutation_p.E366K|PSD4_uc002tje.2_Missense_Mutation_p.E716K|PSD4_uc002tjf.2_Missense_Mutation_p.E366K|PSD4_uc002tjg.2_5'Flank|PSD4_uc010yxs.1_5'Flank|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	745					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CAGGGATGAAGAAGACACAGC	0.552													21	64					0	0	0.002299	0	0
PSD4	23550	broad.mit.edu	37	2	113955447	113955447	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:113955447C>T	uc002tjc.2	+	14	2764	c.2581C>T	c.(2581-2583)CAG>TAG	p.Q861*	PSD4_uc002tjd.2_Nonsense_Mutation_p.Q481*|PSD4_uc002tje.2_Nonsense_Mutation_p.Q831*|PSD4_uc002tjf.2_Nonsense_Mutation_p.Q482*|PSD4_uc002tjg.2_Nonsense_Mutation_p.Q27*|PSD4_uc010yxs.1_Nonsense_Mutation_p.Q91*|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	861	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCACGTCTTCCAGCTGCGCAC	0.657													6	18					0	0	0.001984	0	0
MARCO	8685	broad.mit.edu	37	2	119748191	119748191	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:119748191G>C	uc002tln.1	+	13	1222	c.1090G>C	c.(1090-1092)GGA>CGA	p.G364R	MARCO_uc010yyf.1_Missense_Mutation_p.G286R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	364	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGAAGAAAAGGAGAATCAGG	0.458													15	33					0	0	0.001216	0	0
TMEM37	140738	broad.mit.edu	37	2	120194767	120194767	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:120194767C>T	uc002tly.2	+	2	358	c.324C>T	c.(322-324)TTC>TTT	p.F108F		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	108	Helical; (Potential).					integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						GCCTGGAGTTCCTCATGGTGT	0.652													23	55					0	0	0.002299	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125284989	125284989	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:125284989G>A	uc002tno.2	+	10	1966	c.1602G>A	c.(1600-1602)GGG>GGA	p.G534G	CNTNAP5_uc010flu.2_Silent_p.G535G	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	534	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GTTCCCTGGGGAATTTTAGTG	0.423													21	64					0	0	0.001216	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521678	125521678	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:125521678C>T	uc002tno.2	+	16	2848	c.2484C>T	c.(2482-2484)TTC>TTT	p.F828F	CNTNAP5_uc010flu.2_Silent_p.F829F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	828	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CCGGAGTTTTCCTAGAAAATC	0.353													22	71					0	0	0.003330	0	0
MYO7B	4648	broad.mit.edu	37	2	128367446	128367446	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:128367446T>A	uc002top.2	+	24	3100	c.3047T>A	c.(3046-3048)GTC>GAC	p.V1016D		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1016	MyTH4 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		ATATGGAACGTCATCCTGAGG	0.592													6	6					0	0	0.006214	0	0
WDR33	55339	broad.mit.edu	37	2	128480907	128480907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:128480907C>T	uc002tpg.1	-	12	1394	c.1211G>A	c.(1210-1212)CGA>CAA	p.R404Q		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	404	WD 7.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		TGGTCGGTTTCGAGTCCAGAA	0.388													21	69					0	0	0.001882	0	0
SAP130	79595	broad.mit.edu	37	2	128699649	128699649	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:128699649G>A	uc002tpp.2	-	20	3210	c.3078C>T	c.(3076-3078)GTC>GTT	p.V1026V	SAP130_uc002tpn.2_Silent_p.V786V|SAP130_uc002tpo.2_Silent_p.V806V|SAP130_uc010fmd.2_Silent_p.V1061V	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	1026	Interactions with SIN3A and HDAC1.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		GCAGCTTCAGGACACGGTCTT	0.408													25	84					0	0	0.006320	0	0
UGGT1	56886	broad.mit.edu	37	2	128936107	128936108	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:128936107_128936108CC>TA	uc002tps.2	+	34	3957_3958	c.3779_3780CC>TA	c.(3778-3780)TCC>TTA	p.S1260L	UGGT1_uc002tpr.2_Missense_Mutation_p.S1236L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1260	Glucosyltransferase (By similarity).				'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						AATATTTTCTCCGTTGCATCTG	0.342													13	43					0	0	0.004672	0	0
LOC150776	150776	broad.mit.edu	37	2	132266173	132266173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:132266173C>T	uc010fna.2	+	2	392	c.52C>T	c.(52-54)CAT>TAT	p.H18Y	LOC150776_uc010zax.1_RNA|LOC150776_uc010zay.1_RNA|LOC150776_uc010zaz.1_RNA|LOC150776_uc002tsy.3_RNA					Homo sapiens cDNA FLJ61219 complete cds, highly similar to Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane, transcript variant 2, mRNA.												0						GCAGTCCCCTCATGCCAAGGT	0.418													4	20					0	0	0.000248	0	0
GPR39	2863	broad.mit.edu	37	2	133175238	133175238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:133175238C>T	uc002ttl.2	+	1	1092	c.623C>T	c.(622-624)TCC>TTC	p.S208F		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	208	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TCCAATATGTCCATCTGTACC	0.622													12	39					0	0	0.001855	0	0
NCKAP5	344148	broad.mit.edu	37	2	133636465	133636465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:133636465C>T	uc002ttp.2	-	9	978	c.604G>A	c.(604-606)GAG>AAG	p.E202K	NCKAP5_uc002ttq.2_Missense_Mutation_p.E202K	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	202	Potential.						protein binding				0						TTTTCATTCTCCAAAGCCAAC	0.398													16	58					0	0	0.007413	0	0
LCT	3938	broad.mit.edu	37	2	136547308	136547308	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:136547308T>A	uc002tuu.1	-	16	5407	c.5396A>T	c.(5395-5397)GAG>GTG	p.E1799V		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1799	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGTGGCCCACTCAAAATTGTC	0.493													33	75					0	0	0.004878	0	0
LCT	3938	broad.mit.edu	37	2	136567394	136567394	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:136567394G>A	uc002tuu.1	-	8	2534	c.2523C>T	c.(2521-2523)ATC>ATT	p.I841I		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	841	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TCTTTTCTATGATGCTAGTGA	0.493													55	131					0	0	0.003610	0	0
THSD7B	80731	broad.mit.edu	37	2	138208522	138208523	+	Nonsense_Mutation	DNP	CG	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:138208522_138208523CG>TA	uc002tva.1	+	14	2974_2975	c.2974_2975CG>TA	c.(2974-2976)CGA>TAA	p.R992*	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGTGAGAATTCGATCCAAATGG	0.411													8	22					0	0	0.004672	0	0
THSD7B	80731	broad.mit.edu	37	2	138330034	138330034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:138330034G>A	uc002tva.1	+	16	3244	c.3244G>A	c.(3244-3246)GAT>AAT	p.D1082N	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGCAACCAGGATGAAATTCC	0.453													11	18					0	0	0.000673	0	0
LRP1B	53353	broad.mit.edu	37	2	141081540	141081540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:141081540C>T	uc002tvj.1	-	81	13408	c.12436G>A	c.(12436-12438)GGT>AGT	p.G4146S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4146	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTACTGAACCATGGCCAAAT	0.299										TSP Lung(27;0.18)			17	63					0	0	0.004007	0	0
LRP1B	53353	broad.mit.edu	37	2	141128357	141128357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:141128357G>A	uc002tvj.1	-	71	11902	c.10930C>T	c.(10930-10932)CAC>TAC	p.H3644Y		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3644	Extracellular (Potential).|LDL-receptor class A 29.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGAATACAGTGGGCTTTATTT	0.388										TSP Lung(27;0.18)			63	48					0	0	0.003610	0	0
LRP1B	53353	broad.mit.edu	37	2	141135780	141135780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:141135780C>T	uc002tvj.1	-	68	11579	c.10607G>A	c.(10606-10608)GGA>GAA	p.G3536E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3536	Extracellular (Potential).|LDL-receptor class A 26.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTCAAAATCTCCATCACACCA	0.403										TSP Lung(27;0.18)			17	40					0	0	0.001216	0	0
LRP1B	53353	broad.mit.edu	37	2	141274503	141274503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:141274503C>T	uc002tvj.1	-	50	9076	c.8104G>A	c.(8104-8106)GAT>AAT	p.D2702N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2702	Extracellular (Potential).|LDL-receptor class A 15.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTCTGACCATCGCATATCCAG	0.328										TSP Lung(27;0.18)			11	30					0	0	0.001368	0	0
GTDC1	79712	broad.mit.edu	37	2	144899570	144899570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:144899570G>A	uc002tvp.2	-	6	679	c.400C>T	c.(400-402)CTC>TTC	p.L134F	GTDC1_uc002tvo.2_Missense_Mutation_p.L134F|GTDC1_uc002tvq.2_Missense_Mutation_p.L134F|GTDC1_uc002tvr.2_Missense_Mutation_p.L134F|GTDC1_uc010fnn.2_Missense_Mutation_p.L134F|GTDC1_uc002tvs.2_Missense_Mutation_p.L102F|GTDC1_uc010fno.2_Missense_Mutation_p.L5F|GTDC1_uc002tvt.1_Missense_Mutation_p.L134F	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	134					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		ATGGAAGTGAGAAATGATTCC	0.403													24	20					0	0	0.003330	0	0
MBD5	55777	broad.mit.edu	37	2	149226450	149226450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:149226450C>T	uc002twm.3	+	9	1926	c.938C>T	c.(937-939)CCA>CTA	p.P313L	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.P313L|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	313						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ATGAAAAAACCAATGTGTAAT	0.453													11	30					0	0	0.000978	0	0
NEB	4703	broad.mit.edu	37	2	152520287	152520287	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:152520287G>A	uc010fnx.2	-	45	5729	c.5538C>T	c.(5536-5538)TTC>TTT	p.F1846F		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1846	Nebulin 48.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCACTTGCATGAAGTGCACCA	0.507													15	45					0	0	0.003163	0	0
NEB	4703	broad.mit.edu	37	2	152534195	152534195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:152534195C>T	uc010fnx.2	-	34	3849	c.3658G>A	c.(3658-3660)GGT>AGT	p.G1220S		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1220	Nebulin 30.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AGAGCATCACCGGCCTTTTTA	0.453													52	177					0	0	0.003610	0	0
CACNB4	785	broad.mit.edu	37	2	152695818	152695818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:152695818C>T	uc002tya.2	-	14	1446	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	CACNB4_uc002txy.2_Missense_Mutation_p.E426K|CACNB4_uc002txz.2_Missense_Mutation_p.E442K|CACNB4_uc010fnz.2_Missense_Mutation_p.E398K	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	460					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	TGATAATTTTCATCAGAGGTC	0.433													24	81					0	0	0.003330	0	0
GALNT5	11227	broad.mit.edu	37	2	158157239	158157239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:158157239C>T	uc002tzg.2	+	7	2422	c.2167C>T	c.(2167-2169)CAT>TAT	p.H723Y	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	723	Catalytic subdomain B.|Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CCGAGTGGGCCATATATTCAG	0.458													28	56					0	0	0.002096	0	0
CCDC148	130940	broad.mit.edu	37	2	159201738	159201738	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:159201738C>T	uc002tzq.2	-	3	503	c.240G>A	c.(238-240)CTG>CTA	p.L80L	CCDC148_uc002tzr.2_Intron|CCDC148_uc010foh.2_Intron|CCDC148_uc010foi.1_Silent_p.L27L|CCDC148_uc010foj.1_Intron|CCDC148_uc010fok.1_Intron|CCDC148_uc002tzs.1_Silent_p.L80L	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	80										ovary(2)	2						TGACTTCATTCAGCCTCTGGT	0.368													46	85					0	0	0.003610	0	0
PKP4	8502	broad.mit.edu	37	2	159530252	159530253	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:159530252_159530253CC>TT	uc002tzv.2	+	18	3248_3249	c.2988_2989CC>TT	c.(2986-2991)GACCTC>GATTTC	p.L997F	PKP4_uc002tzw.2_Missense_Mutation_p.L997F|PKP4_uc002tzx.2_Missense_Mutation_p.L654F|PKP4_uc002uaa.2_Missense_Mutation_p.L849F|uc002uab.1_Intron|PKP4_uc002uac.2_Missense_Mutation_p.L178F|PKP4_uc002uad.2_RNA|PKP4_uc002uae.1_Missense_Mutation_p.L84F	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	997					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						AATATCGGGACCTCCGGAGCAT	0.396										HNSCC(62;0.18)			14	18					0	0	0.004672	0	0
LY75	4065	broad.mit.edu	37	2	160732004	160732004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:160732004G>A	uc002ubc.3	-	12	1994	c.1925C>T	c.(1924-1926)CCC>CTC	p.P642L	LY75_uc002ubb.3_Missense_Mutation_p.P642L|LY75_uc010fos.2_Missense_Mutation_p.P642L|LY75_uc010fot.1_Missense_Mutation_p.P642L	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	642	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TTCAGGACAGGGGTCATCAGG	0.458													32	52					0	0	0.003755	0	0
PLA2R1	22925	broad.mit.edu	37	2	160833802	160833802	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:160833802G>A	uc002ube.1	-	15	2601	c.2394C>T	c.(2392-2394)ATC>ATT	p.I798I	PLA2R1_uc010zcp.1_Silent_p.I798I|PLA2R1_uc002ubf.2_Silent_p.I798I	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	798	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TACCTCTTGGGATTTTGCATA	0.348													6	26					0	0	0.001984	0	0
PLA2R1	22925	broad.mit.edu	37	2	160833815	160833815	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:160833815C>T	uc002ube.1	-	15	2588	c.2381G>A	c.(2380-2382)TGG>TAG	p.W794*	PLA2R1_uc010zcp.1_Nonsense_Mutation_p.W794*|PLA2R1_uc002ubf.2_Nonsense_Mutation_p.W794*	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	794	Extracellular (Potential).|C-type lectin 4.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTTGCATATCCATTCACGTTT	0.343													6	27					0	0	0.001984	0	0
SLC4A10	57282	broad.mit.edu	37	2	162751222	162751222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:162751222C>T	uc002ubx.3	+	11	1412	c.1228C>T	c.(1228-1230)CGT>TGT	p.R410C	SLC4A10_uc010fpa.1_Missense_Mutation_p.R422C|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Missense_Mutation_p.R380C|SLC4A10_uc010zcs.1_Missense_Mutation_p.R391C	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	410	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						AGCTAAAGATCGTAATGACTT	0.318													12	21					0	0	0.000978	0	0
IFIH1	64135	broad.mit.edu	37	2	163163336	163163336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:163163336G>A	uc002uce.2	-	3	874	c.652C>T	c.(652-654)CCT>TCT	p.P218S		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	218					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TCCACTTGAGGACCATCAACT	0.383													12	18					0	0	0.001368	0	0
KCNH7	90134	broad.mit.edu	37	2	163241343	163241343	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:163241343G>A	uc002uch.1	-	13	3029	c.2817C>T	c.(2815-2817)TCC>TCT	p.S939S		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	939	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CATCAATGGAGGAGATGAAAG	0.418													39	59					0	0	0.002852	0	0
SCN3A	6328	broad.mit.edu	37	2	166019276	166019276	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:166019276G>A	uc002ucx.2	-	8	1249	c.757C>T	c.(757-759)CTG>TTG	p.L253L	SCN3A_uc002ucy.2_Silent_p.L253L|SCN3A_uc002ucz.2_Silent_p.L253L|SCN3A_uc002uda.1_Silent_p.L122L|SCN3A_uc002udb.1_Silent_p.L122L	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	253	Helical; Name=S5 of repeat I; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AACACAGTCAGGATCATCACA	0.493													25	45					0	0	0.006320	0	0
SCN2A	6326	broad.mit.edu	37	2	166201289	166201289	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:166201289C>T	uc002udc.2	+	16	3077	c.2787C>T	c.(2785-2787)TTC>TTT	p.F929F	SCN2A_uc002udd.2_Silent_p.F929F|SCN2A_uc002ude.2_Silent_p.F929F	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	929	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATGACTTTTTCCACTCCTTCC	0.507													30	64					0	0	0.002096	0	0
SCN2A	6326	broad.mit.edu	37	2	166201295	166201295	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:166201295C>T	uc002udc.2	+	16	3083	c.2793C>T	c.(2791-2793)TCC>TCT	p.S931S	SCN2A_uc002udd.2_Silent_p.S931S|SCN2A_uc002ude.2_Silent_p.S931S	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	931	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTTTCCACTCCTTCCTGATCG	0.498													31	61					0	0	0.001786	0	0
SCN1A	6323	broad.mit.edu	37	2	166866246	166866246	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:166866246G>A	uc010zcz.1	-	20	3970	c.3952C>T	c.(3952-3954)CGA>TGA	p.R1318*	SCN1A_uc002udo.3_Nonsense_Mutation_p.R1198*|SCN1A_uc010fpk.2_Nonsense_Mutation_p.R1170*	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1329	Helical; Voltage-sensor; Name=S4 of repeat III; (By similarity).|III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCTTCAAATCGAGATAAGGCT	0.358													11	25					0	0	0.000978	0	0
SCN9A	6335	broad.mit.edu	37	2	167055571	167055571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:167055571G>A	uc010fpl.2	-	27	5886	c.5545C>T	c.(5545-5547)CGT>TGT	p.R1849C	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1860						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATCTGTGAACGAAGAGAATCC	0.453													42	60					0	0	0.002852	0	0
SCN9A	6335	broad.mit.edu	37	2	167151135	167151135	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:167151135G>A	uc010fpl.2	-	8	1280	c.939C>T	c.(937-939)CTC>CTT	p.L313L	uc002udp.2_RNA|SCN9A_uc002udr.1_Silent_p.L184L|SCN9A_uc002uds.1_Silent_p.L184L|SCN9A_uc002udt.1_Silent_p.L184L	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	313	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AACCACAAAGGAGAGCATCTT	0.328													14	10					0	0	0.003163	0	0
SCN9A	6335	broad.mit.edu	37	2	167168250	167168250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:167168250G>A	uc010fpl.2	-	2	358	c.17C>T	c.(16-18)CCC>CTC	p.P6L		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	6						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AGGTCCTGGGGGAGGCAACAT	0.403													19	35					0	0	0.001882	0	0
XIRP2	129446	broad.mit.edu	37	2	168099639	168099639	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:168099639G>A	uc002udx.2	+	8	1755	c.1737G>A	c.(1735-1737)TGG>TGA	p.W579*	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Nonsense_Mutation_p.W404*|XIRP2_uc010fpq.2_Nonsense_Mutation_p.W357*|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	404	Xin 2.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCATTAGATGGATCTTTGAGA	0.408													12	11					0	0	0.001368	0	0
XIRP2	129446	broad.mit.edu	37	2	168099701	168099701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:168099701C>T	uc002udx.2	+	8	1817	c.1799C>T	c.(1798-1800)TCC>TTC	p.S600F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S425F|XIRP2_uc010fpq.2_Missense_Mutation_p.S378F|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	425					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGTGATATTTCCAGGGGCATT	0.433													10	20					0	0	0.001368	0	0
XIRP2	129446	broad.mit.edu	37	2	168102538	168102538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:168102538G>A	uc002udx.2	+	8	4654	c.4636G>A	c.(4636-4638)GAA>AAA	p.E1546K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E1371K|XIRP2_uc010fpq.2_Missense_Mutation_p.E1324K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1371					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGAAAAGATAGAAATTATTGG	0.373													10	34					0	0	0.000978	0	0
XIRP2	129446	broad.mit.edu	37	2	168102690	168102690	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:168102690G>A	uc002udx.2	+	8	4806	c.4788G>A	c.(4786-4788)CAG>CAA	p.Q1596Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.Q1421Q|XIRP2_uc010fpq.2_Silent_p.Q1374Q|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1421					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTGAGATACAGAAAGAAGAAA	0.383													11	17					0	0	0.000978	0	0
NOSTRIN	115677	broad.mit.edu	37	2	169717389	169717389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:169717389G>A	uc002ueg.2	+	14	1268	c.1264G>A	c.(1264-1266)GGG>AGG	p.G422R	NOSTRIN_uc002uef.2_Missense_Mutation_p.G479R|NOSTRIN_uc002uei.2_Missense_Mutation_p.G305R|NOSTRIN_uc010fpu.2_Missense_Mutation_p.G394R|NOSTRIN_uc002ueh.2_Missense_Mutation_p.G344R|NOSTRIN_uc002uej.2_Missense_Mutation_p.G305R|NOSTRIN_uc002uek.2_Missense_Mutation_p.G106R	NM_001039724	NP_001034813	Q8IVI9	NOSTN_HUMAN	nitric oxide synthase trafficker isoform 2	422					endocytosis|nitric oxide metabolic process|regulation of nitric-oxide synthase activity	cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	protein binding				0						ATCTTCTGGTGGGCAGAGCAA	0.418													14	22					0	0	0.003163	0	0
C2orf77	129881	broad.mit.edu	37	2	170537609	170537609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:170537609C>T	uc002ufe.2	-	2	296	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	68	Potential.										0						CATGCTGCTTCTCTTGTCAAC	0.428													26	62					0	0	0.001512	0	0
MYO3B	140469	broad.mit.edu	37	2	171371488	171371488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:171371488G>A	uc002ufy.2	+	29	3571	c.3428G>A	c.(3427-3429)GGA>GAA	p.G1143E	MYO3B_uc002ufv.2_Missense_Mutation_p.G1130E|MYO3B_uc010fqb.1_Missense_Mutation_p.G1130E|MYO3B_uc002ufz.2_Missense_Mutation_p.G1116E|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1143					response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GGTACGAGGGGAAGTGCCGAG	0.498													9	21					0	0	0.000978	0	0
GAD1	2571	broad.mit.edu	37	2	171704187	171704187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:171704187G>A	uc002ugi.2	+	11	1426	c.1004G>A	c.(1003-1005)GGA>GAA	p.G335E		NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	335					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ACCTTGTAGGGATATGTTCCC	0.353													31	66					0	0	0.004878	0	0
GORASP2	26003	broad.mit.edu	37	2	171804879	171804879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:171804879G>A	uc002ugk.2	+	2	223	c.83G>A	c.(82-84)GGA>GAA	p.G28E	GORASP2_uc002ugj.2_5'UTR|GORASP2_uc010zdl.1_Missense_Mutation_p.G40E|GORASP2_uc010zdm.1_5'UTR|GORASP2_uc002ugl.2_5'UTR	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	28	PDZ.					Golgi membrane				breast(1)|central_nervous_system(1)	2						AATTCCCCAGGACACAGAGCT	0.323													14	24					0	0	0.006122	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173679042	173679042	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:173679042G>A	uc002uhv.3	+	4	520	c.333G>A	c.(331-333)ACG>ACA	p.T111T	RAPGEF4_uc002uhu.2_Silent_p.T111T|RAPGEF4_uc010fqn.2_Silent_p.T94T	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	111	cAMP 1.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			GAATTGGGACGGCCTTTGGAG	0.478													26	39					0	0	0.001786	0	0
EVX2	344191	broad.mit.edu	37	2	176948121	176948122	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:176948121_176948122GG>AA	uc010zeu.1	-	1	569_570	c.383_384CC>TT	c.(382-384)CCC>CTT	p.P128L		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	128						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CGAGGCCCCCGGGGGAGCGAAG	0.688													7	9					0	0	0.004672	0	0
HOXD10	3236	broad.mit.edu	37	2	176981967	176981967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:176981967C>T	uc002ukj.2	+	1	476	c.406C>T	c.(406-408)CCT>TCT	p.P136S		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	136						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GAGGCTGGTCCCTGAGTCTTG	0.493													48	86					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179396977	179396977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179396977C>T	uc010zfg.1	-	307	96885	c.96661G>A	c.(96661-96663)GAA>AAA	p.E32221K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25916K|TTN_uc010zfi.1_Missense_Mutation_p.E25849K|TTN_uc010zfj.1_Missense_Mutation_p.E25724K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTCAAGTTCGCTTTTGTAT	0.438													11	23					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179400315	179400315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179400315C>T	uc010zfg.1	-	307	93547	c.93323G>A	c.(93322-93324)GGA>GAA	p.G31108E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G24803E|TTN_uc010zfi.1_Missense_Mutation_p.G24736E|TTN_uc010zfj.1_Missense_Mutation_p.G24611E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32035							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGATCAATTCCAAATCTGTT	0.423													17	37					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179432657	179432657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179432657C>T	uc010zfg.1	-	275	70722	c.70498G>A	c.(70498-70500)GAA>AAA	p.E23500K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E17195K|TTN_uc010zfi.1_Missense_Mutation_p.E17128K|TTN_uc010zfj.1_Missense_Mutation_p.E17003K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24427							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAATATTTTCAGCATACACT	0.388													53	82					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179452781	179452781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179452781C>T	uc010zfg.1	-	254	55873	c.55649G>A	c.(55648-55650)CGG>CAG	p.R18550Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R12245Q|TTN_uc010zfi.1_Missense_Mutation_p.R12178Q|TTN_uc010zfj.1_Missense_Mutation_p.R12053Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19477							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCATTACACCGTTTCCAGCC	0.463													13	28					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179469558	179469558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179469558C>T	uc010zfg.1	-	230	46778	c.46554G>A	c.(46552-46554)TGG>TGA	p.W15518*	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W9213*|TTN_uc010zfi.1_Nonsense_Mutation_p.W9146*|TTN_uc010zfj.1_Nonsense_Mutation_p.W9021*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16445							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGGGCATCCCATGTCAAGT	0.438													21	27					0	0	0.001523	0	0
TTN	7273	broad.mit.edu	37	2	179532199	179532199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179532199G>A	uc010zfk.1	-	7	753	c.205C>T	c.(205-207)CCT>TCT	p.P69S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11260							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTTTTTAGGAATAGTCACA	0.313													6	13					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179577252	179577252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179577252C>T	uc010zfg.1	-	92	23889	c.23665G>A	c.(23665-23667)GGT>AGT	p.G7889S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4550S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8816							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGAATGTACCCTCTAGGATC	0.388													6	15					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179592968	179592968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179592968C>T	uc010zfg.1	-	64	16075	c.15851G>A	c.(15850-15852)AGA>AAA	p.R5284K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R1945K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6211							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACACAAGTCTGTATTTTGC	0.393													4	23					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179595812	179595812	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179595812G>A	uc010zfg.1	-	57	14072	c.13848C>T	c.(13846-13848)GGC>GGT	p.G4616G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G1277G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGTTCTTGGCCATCTTTAA	0.393													26	32					0	0	0.003330	0	0
TTN	7273	broad.mit.edu	37	2	179597596	179597596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179597596C>T	uc010zfg.1	-	52	12799	c.12575G>A	c.(12574-12576)GGA>GAA	p.G4192E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G853E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5119							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCTTTGCTTCCCACGGAATT	0.428													8	17					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179604819	179604819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179604819C>T	uc010zfh.1	-	46	12852	c.12628G>A	c.(12628-12630)GAA>AAA	p.E4210K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4143K|TTN_uc010zfj.1_Missense_Mutation_p.E4018K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4137							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCAAGCTTTCCTTAGAAAGA	0.498													19	31					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179610515	179610515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179610515G>A	uc002unb.2	-	46	16836	c.16612C>T	c.(16612-16614)CGT>TGT	p.R5538C	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGAGCCACGAACTAAGCAC	0.443													33	35					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179611554	179611554	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179611554T>C	uc002unb.2	-	46	15797	c.15573A>G	c.(15571-15573)AAA>AAG	p.K5191K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACCTTCCTTTTGGTCAGAG	0.388													15	37					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179613473	179613473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179613473C>T	uc002unb.2	-	46	13878	c.13654G>A	c.(13654-13656)GAA>AAA	p.E4552K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	684							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTATTTTTTCCTGTTGTTCC	0.313													16	26					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179617902	179617902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179617902C>T	uc010zfg.1	-	45	10533	c.10309G>A	c.(10309-10311)GAA>AAA	p.E3437K	TTN_uc010zfh.1_Missense_Mutation_p.E3583K|TTN_uc010zfi.1_Missense_Mutation_p.E3516K|TTN_uc010zfj.1_Missense_Mutation_p.E3391K|TTN_uc002umz.1_Missense_Mutation_p.E98K|TTN_uc002unb.2_Missense_Mutation_p.E3437K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAAATTGATTCAGGAGCTAAA	0.264													16	16					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179621414	179621414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179621414C>T	uc010zfh.1	-	44	10500	c.10276G>A	c.(10276-10278)GAA>AAA	p.E3426K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3451							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACTTAATTTCCTTTTGAGAT	0.408													18	31					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179632880	179632880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179632880G>A	uc010zfg.1	-	39	9390	c.9166C>T	c.(9166-9168)CGT>TGT	p.R3056C	TTN_uc010zfh.1_Missense_Mutation_p.R3010C|TTN_uc010zfi.1_Missense_Mutation_p.R3010C|TTN_uc010zfj.1_Missense_Mutation_p.R3010C|TTN_uc002unb.2_Missense_Mutation_p.R3056C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3056							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTATATGACGAGCTGGAAAA	0.239													8	13					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179639012	179639012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179639012C>T	uc010zfg.1	-	30	7203	c.6979G>A	c.(6979-6981)GAT>AAT	p.D2327N	TTN_uc010zfh.1_Missense_Mutation_p.D2281N|TTN_uc010zfi.1_Missense_Mutation_p.D2281N|TTN_uc010zfj.1_Missense_Mutation_p.D2281N|TTN_uc002unb.2_Missense_Mutation_p.D2327N|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2327							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGTTACATCCTTGACCGTG	0.408													29	42					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179650595	179650595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179650595C>T	uc010zfg.1	-	14	2574	c.2350G>A	c.(2350-2352)GGA>AGA	p.G784R	TTN_uc010zfh.1_Missense_Mutation_p.G738R|TTN_uc010zfi.1_Missense_Mutation_p.G738R|TTN_uc010zfj.1_Missense_Mutation_p.G738R|TTN_uc002unb.2_Missense_Mutation_p.G784R|TTN_uc010frg.1_Missense_Mutation_p.G366R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	784							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTGCATTCCCTTTTGATCA	0.463													22	25					0	0	0.002299	0	0
CCDC141	285025	broad.mit.edu	37	2	179702159	179702159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179702159C>T	uc002unf.1	-	13	2119	c.2062G>A	c.(2062-2064)GAA>AAA	p.E688K	CCDC141_uc002une.1_Missense_Mutation_p.E138K	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	688							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AGAACAGATTCCTGGGCATCC	0.522													12	27					0	0	0.002450	0	0
CCDC141	285025	broad.mit.edu	37	2	179720257	179720257	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179720257C>T	uc002unf.1	-	9	1209	c.1152G>A	c.(1150-1152)AGG>AGA	p.R384R		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	384	Potential.						protein binding	p.R384R(1)		ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTTCCATTTTCCTTTTCAAAG	0.274													11	21					0	0	0.000673	0	0
CCDC141	285025	broad.mit.edu	37	2	179742691	179742691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:179742691C>T	uc002unf.1	-	2	231	c.174G>A	c.(172-174)ATG>ATA	p.M58I	CCDC141_uc002ung.2_Missense_Mutation_p.M633I	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	58							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CCATTCTTACCATATTTATTA	0.358													9	29					0	0	0.004482	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800580	185800580	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:185800580C>T	uc002uph.2	+	4	1051	c.457C>T	c.(457-459)CAA>TAA	p.Q153*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	153						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGAAATTTCCCAACGAGTTGT	0.373													14	13					0	0	0.003163	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801111	185801111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:185801111C>T	uc002uph.2	+	4	1582	c.988C>T	c.(988-990)CCA>TCA	p.P330S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	330						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAATTCAGTCCCATTAGCAGA	0.323													13	11					0	0	0.001855	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802718	185802718	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:185802718C>T	uc002uph.2	+	4	3189	c.2595C>T	c.(2593-2595)ATC>ATT	p.I865I		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	865						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTGCAAAAATCGAAAGGAACT	0.358													17	23					0	0	0.007413	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802839	185802839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:185802839G>A	uc002uph.2	+	4	3310	c.2716G>A	c.(2716-2718)GAA>AAA	p.E906K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	906						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CACTTCTGGTGAATTGTCAGA	0.408													13	27					0	0	0.001855	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803026	185803026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:185803026C>T	uc002uph.2	+	4	3497	c.2903C>T	c.(2902-2904)TCC>TTC	p.S968F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	968						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAGCCTAAATCCTATCTTTGC	0.383													16	23					0	0	0.001216	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693226	187693226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:187693226C>T	uc002upu.1	-	9	1427	c.1387G>A	c.(1387-1389)GAA>AAA	p.E463K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	463					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTTGTATTTTCATAGGCATCT	0.284													9	24					0	0	0.000978	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187693262	187693262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:187693262C>T	uc002upu.1	-	9	1391	c.1351G>A	c.(1351-1353)GAA>AAA	p.E451K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	451					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTATTCAATTCATCAAAATTA	0.294													10	25					0	0	0.000978	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187703747	187703747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:187703747C>T	uc002upu.1	-	4	473	c.433G>A	c.(433-435)GAT>AAT	p.D145N		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	145					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GAGCAGATATCCTCTGAATCA	0.358													55	107					0	0	0.003610	0	0
CALCRL	10203	broad.mit.edu	37	2	188247997	188247997	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:188247997C>T	uc002upv.3	-	5	635	c.87G>A	c.(85-87)GAG>GAA	p.E29E	CALCRL_uc010frt.2_Silent_p.E29E	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	29	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GAATTGAGTCCTCAGGACTCT	0.338													11	12					0	0	0.000673	0	0
COL3A1	1281	broad.mit.edu	37	2	189855743	189855743	+	Missense_Mutation	SNP	G	A	A	rs112185887	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:189855743G>A	uc002uqj.1	+	11	929	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	271	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTCGATGGACGAAATGGAGAA	0.279													42	46					0	0	0.003610	0	0
COL3A1	1281	broad.mit.edu	37	2	189855751	189855751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:189855751G>A	uc002uqj.1	+	11	937	c.820G>A	c.(820-822)GAA>AAA	p.E274K	COL3A1_uc010frw.1_5'Flank	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	274	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	ACGAAATGGAGAAAAGGGTGA	0.284													27	60					0	0	0.004289	0	0
SLC40A1	30061	broad.mit.edu	37	2	190437582	190437582	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:190437582C>T	uc002uqp.3	-	4	728	c.377G>A	c.(376-378)GGA>GAA	p.G126E	SLC40A1_uc002uqq.2_Missense_Mutation_p.G126E	NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	126	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GAGAACCCATCCATGGTACAT	0.388													23	25					0	0	0.004656	0	0
STAT4	6775	broad.mit.edu	37	2	191937854	191937854	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:191937854G>A	uc002usm.1	-	5	689	c.435C>T	c.(433-435)CAC>CAT	p.H145H	STAT4_uc002usn.1_Silent_p.H145H|STAT4_uc002uso.2_Silent_p.H145H	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	145					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			CAGCCACTTTGTGCTCCACAT	0.403													17	142					0	0	0.007413	0	0
DNAH7	56171	broad.mit.edu	37	2	196602810	196602810	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:196602810C>T	uc002utj.3	-	65	12011	c.11910G>A	c.(11908-11910)CGG>CGA	p.R3970R	DNAH7_uc002uti.3_Silent_p.R453R	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3970					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CATAACTTGGCCGTTTTGGTA	0.428													7	23					0	0	0.004482	0	0
DNAH7	56171	broad.mit.edu	37	2	196659083	196659083	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:196659083G>A	uc002utj.3	-	57	10796	c.10695C>T	c.(10693-10695)TTC>TTT	p.F3565F	DNAH7_uc002uti.3_Silent_p.F48F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3565	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGCTGCCAAAGAACTCCGGAT	0.463													27	50					0	0	0.006320	0	0
DNAH7	56171	broad.mit.edu	37	2	196723387	196723387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:196723387C>T	uc002utj.3	-	43	7979	c.7878G>A	c.(7876-7878)ATG>ATA	p.M2626I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2626	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCATTATCATCATTTCATCAA	0.383													15	42					0	0	0.004990	0	0
DNAH7	56171	broad.mit.edu	37	2	196801391	196801391	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:196801391G>A	uc002utj.3	-	20	3305	c.3204C>T	c.(3202-3204)TTC>TTT	p.F1068F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1068	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGAATCTGGGGAAAAAGAGGC	0.338													15	31					0	0	0.007413	0	0
DNAH7	56171	broad.mit.edu	37	2	196866570	196866570	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:196866570T>C	uc002utj.3	-	11	1103	c.1002A>G	c.(1000-1002)GAA>GAG	p.E334E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	334	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TATTCTGCACTTCTGGAAACC	0.343													6	13					0	0	0.004482	0	0
HECW2	57520	broad.mit.edu	37	2	197183391	197183391	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:197183391C>T	uc002utm.1	-	9	2406	c.2223G>A	c.(2221-2223)GGG>GGA	p.G741G	HECW2_uc002utl.1_Silent_p.G385G	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	741	Interaction with TP73.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CCTCCAGGCTCCCCCTCCGCT	0.672													7	8					0	0	0.003080	0	0
HECW2	57520	broad.mit.edu	37	2	197183418	197183418	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:197183418C>T	uc002utm.1	-	9	2379	c.2196G>A	c.(2194-2196)GAG>GAA	p.E732E	HECW2_uc002utl.1_Silent_p.E376E	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	732					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CCTCCCCCAGCTCCTCCTGGT	0.647													5	10					0	0	0.001984	0	0
PGAP1	80055	broad.mit.edu	37	2	197777618	197777618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:197777618G>A	uc002utw.2	-	4	751	c.637C>T	c.(637-639)CGT>TGT	p.R213C	PGAP1_uc002utx.2_Missense_Mutation_p.R39C|PGAP1_uc002uty.1_Missense_Mutation_p.R213C|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_Missense_Mutation_p.R39C	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	213	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						GTAATGAAACGATCTAATGGC	0.289													11	19					0	0	0.001368	0	0
RFTN2	130132	broad.mit.edu	37	2	198436869	198436869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:198436869C>T	uc002uuo.3	-	9	1771	c.1369G>A	c.(1369-1371)GAA>AAA	p.E457K		NM_144629	NP_653230	Q52LD8	RFTN2_HUMAN	raftlin family member 2	457						plasma membrane					0						GTCCAGCATTCCCGGGAGGGA	0.547													19	36					0	0	0.001216	0	0
PLCL1	5334	broad.mit.edu	37	2	198950925	198950925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:198950925G>A	uc010fsp.2	+	2	2975	c.2684G>A	c.(2683-2685)CGA>CAA	p.R895Q	PLCL1_uc002uuv.3_Missense_Mutation_p.R816Q	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	895	Potential.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	CATCCATTACGAGAAGCCATA	0.388													9	8					0	0	0.000673	0	0
AOX1	316	broad.mit.edu	37	2	201485379	201485379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:201485379G>A	uc002uvx.2	+	17	1812	c.1711G>A	c.(1711-1713)GGC>AGC	p.G571S	AOX1_uc010zhf.1_Missense_Mutation_p.G127S|AOX1_uc010fsu.2_Intron	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	571					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	ACAGAATATAGGCCCAAAGCA	0.403													7	15					0	0	0.003080	0	0
MPP4	58538	broad.mit.edu	37	2	202545639	202545639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:202545639G>A	uc002uyk.3	-	10	1059	c.851C>T	c.(850-852)GCC>GTC	p.A284V	MPP4_uc010ftj.2_Missense_Mutation_p.A284V|MPP4_uc010zhq.1_Missense_Mutation_p.A284V|MPP4_uc010zhr.1_Missense_Mutation_p.A284V|MPP4_uc010zhs.1_Missense_Mutation_p.A240V|MPP4_uc002uyj.3_Missense_Mutation_p.A240V|MPP4_uc010zht.1_Missense_Mutation_p.A257V|MPP4_uc002uyl.3_RNA|MPP4_uc010ftk.2_Missense_Mutation_p.A271V|MPP4_uc002uym.1_Missense_Mutation_p.A253V|MPP4_uc002uyn.2_Missense_Mutation_p.A240V	NM_033066	NP_149055	Q96JB8	MPP4_HUMAN	membrane protein, palmitoylated 4	284	SH3.					cytoplasm	protein binding				0						CCACCAGAGGGCATCATTCTG	0.572											OREG0015145	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	9					0	0	0.001168	0	0
ALS2	57679	broad.mit.edu	37	2	202603418	202603418	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:202603418A>C	uc002uyo.2	-	12	2748	c.2392T>G	c.(2392-2394)TTC>GTC	p.F798V	ALS2_uc002uyp.3_Missense_Mutation_p.F798V|ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	798	DH.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						AGAAGCTGGAATCCTCCCATA	0.388													8	14					0	0	0.000673	0	0
ALS2	57679	broad.mit.edu	37	2	202619390	202619390	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:202619390G>A	uc002uyo.2	-	6	1832	c.1476C>T	c.(1474-1476)TCC>TCT	p.S492S	ALS2_uc002uyp.3_Silent_p.S492S|ALS2_uc002uyq.2_Silent_p.S492S	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	492					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						AGAGCCTGGGGGAAACTGAAA	0.488													21	24					0	0	0.002780	0	0
FZD7	8324	broad.mit.edu	37	2	202900514	202900514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:202900514C>T	uc002uyw.1	+	1	1205	c.1144C>T	c.(1144-1146)CAC>TAC	p.H382Y		NM_003507	NP_003498	O75084	FZD7_HUMAN	frizzled 7 precursor	382	Helical; Name=4; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|mesenchymal to epithelial transition|negative regulation of cell-substrate adhesion|negative regulation of ectodermal cell fate specification|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent|regulation of catenin import into nucleus|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(2)|ovary(1)|breast(1)	4						GCAGTACTTCCACCTGGCCGC	0.652											OREG0015146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	28					0	0	0.004482	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203817287	203817287	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:203817287C>T	uc002uzo.2	+	5	592	c.312C>T	c.(310-312)ATC>ATT	p.I104I	ALS2CR8_uc002uzn.2_Silent_p.I2I|ALS2CR8_uc002uzm.2_Silent_p.I104I|ALS2CR8_uc010zhy.1_Silent_p.I104I|ALS2CR8_uc010zhz.1_RNA|ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Silent_p.I28I|ALS2CR8_uc010zib.1_Silent_p.I28I|ALS2CR8_uc010zic.1_Silent_p.I16I|ALS2CR8_uc002uzp.2_Silent_p.I104I	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	104										large_intestine(1)|ovary(1)	2						CCAAGATGATCGTTGCCAGCC	0.348													59	109					0	0	0.003610	0	0
ABI2	10152	broad.mit.edu	37	2	204231653	204231653	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:204231653C>T	uc002vaa.2	+	2	406	c.171C>T	c.(169-171)TCC>TCT	p.S57S	ABI2_uc010zig.1_RNA|ABI2_uc002uzz.2_Silent_p.S57S|ABI2_uc010zih.1_5'UTR|ABI2_uc010zii.1_Silent_p.S57S|ABI2_uc010zij.1_5'UTR|ABI2_uc002vab.2_5'UTR	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	57	t-SNARE coiled-coil homology.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						CCACCCAATCCTTAGCAAGTG	0.433													11	13					0	0	0.000978	0	0
ICOS	29851	broad.mit.edu	37	2	204820433	204820433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:204820433C>T	uc002vam.2	+	2	200	c.133C>T	c.(133-135)CCT>TCT	p.P45S	ICOS_uc010zip.1_Missense_Mutation_p.P45S|ICOS_uc010fua.2_Missense_Mutation_p.P45S	NM_012092	NP_036224	Q9Y6W8	ICOS_HUMAN	inducible T-cell co-stimulator precursor	45	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	extracellular region					0						ATGCAAATATCCTGACATTGT	0.368													26	32					0	0	0.007291	0	0
PARD3B	117583	broad.mit.edu	37	2	206166390	206166390	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:206166390G>A	uc002var.1	+	18	2802	c.2595G>A	c.(2593-2595)AGG>AGA	p.R865R	PARD3B_uc010fub.1_Silent_p.R865R|PARD3B_uc002vao.1_Silent_p.R865R|PARD3B_uc002vap.1_Silent_p.R803R|PARD3B_uc002vaq.1_Silent_p.R796R	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	865	Lys-rich.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		atccagaaaggaaaataaaga	0.229													13	10					0	0	0.001368	0	0
ADAM23	8745	broad.mit.edu	37	2	207460812	207460812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:207460812C>T	uc002vbq.2	+	24	2508	c.2285C>T	c.(2284-2286)ACC>ATC	p.T762I	ADAM23_uc010ziv.1_Intron	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	762	EGF-like.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TGTGATTTCACCTGGGCAGGG	0.423													13	19					0	0	0.004990	0	0
MDH1B	130752	broad.mit.edu	37	2	207619767	207619767	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:207619767G>A	uc002vbs.2	-	5	931	c.876C>T	c.(874-876)GCC>GCT	p.A292A	MDH1B_uc010ziw.1_Intron|MDH1B_uc010fui.2_Silent_p.A292A|MDH1B_uc010fuj.2_Silent_p.A194A|MDH1B_uc002vbt.2_Intron	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	292					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		TGGCCAGTATGGCTTTCGCTT	0.423													17	25					0	0	0.004007	0	0
SPAG16	79582	broad.mit.edu	37	2	214878736	214878736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:214878736C>T	uc002veq.2	+	13	1554	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S	SPAG16_uc010fuz.1_Missense_Mutation_p.P339S|SPAG16_uc002ver.2_Missense_Mutation_p.P434S|SPAG16_uc010zjk.1_Missense_Mutation_p.P394S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	488	WD 4.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TGAGTTTTTTCCTTTCTCCAA	0.363													32	44					0	0	0.002836	0	0
ABCA12	26154	broad.mit.edu	37	2	215820086	215820086	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:215820086C>T	uc002vew.2	-	43	6454	c.6234_splice	c.e43-1	p.G2078_splice	ABCA12_uc002vev.2_Splice_Site_p.G1760_splice|ABCA12_uc010zjn.1_Splice_Site_p.G1005_splice	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12						cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TGTTGCATACCTGCAGGTTAA	0.284													4	15					0	0	0.000602	0	0
FN1	2335	broad.mit.edu	37	2	216293030	216293030	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:216293030G>A	uc002vfa.2	-	6	983	c.717C>T	c.(715-717)TCC>TCT	p.S239S	FN1_uc002vfb.2_Silent_p.S239S|FN1_uc002vfc.2_Silent_p.S239S|FN1_uc002vfd.2_Silent_p.S239S|FN1_uc002vfe.2_Silent_p.S239S|FN1_uc002vff.2_Silent_p.S239S|FN1_uc002vfg.2_Silent_p.S239S|FN1_uc002vfh.2_Silent_p.S239S|FN1_uc002vfi.2_Silent_p.S239S|FN1_uc002vfj.2_Silent_p.S239S|FN1_uc002vfl.2_Silent_p.S239S	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	239	Fibrin- and heparin-binding 1.|Fibronectin type-I 5.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAATTCTATAGGATGTCCTTG	0.478													17	31					0	0	0.001216	0	0
RUFY4	285180	broad.mit.edu	37	2	218940305	218940305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:218940305G>A	uc002vgw.2	+	10	2415	c.571G>A	c.(571-573)GGG>AGG	p.G191R	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Missense_Mutation_p.G191R	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	364							metal ion binding	p.P191L(1)		pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GAGCAGGCAGGGGTCGGGGGG	0.597													7	10					0	0	0.000978	0	0
CXCR2	3579	broad.mit.edu	37	2	219000455	219000455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:219000455C>T	uc002vgz.1	+	4	1156	c.931C>T	c.(931-933)CCC>TCC	p.P311S	CXCR2_uc002vha.1_Missense_Mutation_p.P311S|CXCR2_uc002vhb.1_Missense_Mutation_p.P311S	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	311	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CTGCCTCAACCCCCTCATCTA	0.562													12	40					0	0	0.000978	0	0
TTLL4	9654	broad.mit.edu	37	2	219617591	219617591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:219617591C>T	uc002viy.2	+	17	3452	c.3082C>T	c.(3082-3084)CCT>TCT	p.P1028S	TTLL4_uc010zkl.1_Missense_Mutation_p.P863S|TTLL4_uc010fvx.2_Missense_Mutation_p.P964S|TTLL4_uc010zkm.1_Missense_Mutation_p.P231S	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1028					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		ACGAATTTTTCCTTCTCATAT	0.453													39	74					0	0	0.001951	0	0
PRKAG3	53632	broad.mit.edu	37	2	219695493	219695493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:219695493C>T	uc002vjb.1	-	3	224	c.205G>A	c.(205-207)GGG>AGG	p.G69R	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.G69R|PRKAG3_uc010zko.1_Missense_Mutation_p.G69R	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	69					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTGGCTCCCCTTCCTCCACC	0.612													26	42					0	0	0.005443	0	0
CCDC108	255101	broad.mit.edu	37	2	219870935	219870935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:219870935G>A	uc002vjl.1	-	31	4814	c.4730C>T	c.(4729-4731)CCC>CTC	p.P1577L		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1577						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTTCTTGATGGGAGGCAGTGT	0.612													11	24					0	0	0.002450	0	0
CCDC108	255101	broad.mit.edu	37	2	219892725	219892725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:219892725C>T	uc002vjl.1	-	13	1942	c.1858G>A	c.(1858-1860)GAG>AAG	p.E620K	CCDC108_uc010fwa.1_Missense_Mutation_p.E63K|CCDC108_uc010zkp.1_Missense_Mutation_p.E609K|CCDC108_uc010zkq.1_Missense_Mutation_p.E555K	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	620						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCATGTCCTCCAGATCCTGC	0.577													24	34					0	0	0.006320	0	0
C2orf24	27013	broad.mit.edu	37	2	220037846	220037846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220037846G>A	uc002vju.3	-	8	847	c.695C>T	c.(694-696)TCT>TTT	p.S232F	C2orf24_uc002vjv.2_Missense_Mutation_p.S232F	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	232					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TAACAGGCAAGACAGCTGCAG	0.502													5	13					0	0	0.000602	0	0
DNPEP	23549	broad.mit.edu	37	2	220239721	220239721	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220239721G>A	uc010zlg.1	-	14	1369	c.1287C>T	c.(1285-1287)ACC>ACT	p.T429T	DNPEP_uc010zlf.1_RNA|DNPEP_uc002vle.2_Silent_p.T421T|DNPEP_uc002vlf.1_Silent_p.T407T|DNPEP_uc002vlh.2_Silent_p.T368T|DNPEP_uc002vli.1_Silent_p.T368T	NM_012100	NP_036232	Q9ULA0	DNPEP_HUMAN	aspartyl aminopeptidase	411					peptide metabolic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;1.09e-06)|all cancers(144;0.000179)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)	L-Glutamic Acid(DB00142)	TTCCACAGGGGGTGTCATTCC	0.567													9	13					0	0	0.000673	0	0
ACCN4	55515	broad.mit.edu	37	2	220379729	220379729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220379729C>T	uc002vma.2	+	1	678	c.664C>T	c.(664-666)CGG>TGG	p.R222W	ACCN4_uc010fwi.1_Missense_Mutation_p.R222W|ACCN4_uc010fwj.1_Missense_Mutation_p.R222W|ACCN4_uc002vly.1_Missense_Mutation_p.R222W|ACCN4_uc002vlz.2_Missense_Mutation_p.R222W|ACCN4_uc002vmb.2_5'Flank	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	222	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		CTACCTGACCCGGCCTCACCT	0.692													10	11					0	0	0.000673	0	0
ACCN4	55515	broad.mit.edu	37	2	220396617	220396617	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220396617G>A	uc002vma.2	+	2	1115	c.1101G>A	c.(1099-1101)AGG>AGA	p.R367R	ACCN4_uc010fwi.1_Silent_p.R367R|ACCN4_uc010fwj.1_Silent_p.R367R|ACCN4_uc002vly.1_Silent_p.R367R|ACCN4_uc002vlz.2_Silent_p.R367R|ACCN4_uc002vmb.2_Silent_p.R21R	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	367	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		CCATCTGGAGGGAGACAAGTA	0.667													29	37					0	0	0.001512	0	0
ACCN4	55515	broad.mit.edu	37	2	220402443	220402443	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220402443G>A	uc002vma.2	+	8	1829	c.1815G>A	c.(1813-1815)CAG>CAA	p.Q605Q	ACCN4_uc002vlz.2_Silent_p.Q624Q|ACCN4_uc002vmb.2_3'UTR	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	605	Cytoplasmic (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		TGGGGCTTCAGGAGCTGAAGG	0.582													7	5					0	0	0.004482	0	0
SLC4A3	6508	broad.mit.edu	37	2	220504210	220504210	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:220504210C>T	uc002vmp.3	+	20	3299	c.3030C>T	c.(3028-3030)ATC>ATT	p.I1010I	SLC4A3_uc002vmo.3_Silent_p.I1037I|SLC4A3_uc010fwm.2_Silent_p.I560I	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1010	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCAGGCTTATCGTCAGCCAGA	0.662													19	27					0	0	0.002780	0	0
EPHA4	2043	broad.mit.edu	37	2	222428683	222428683	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:222428683G>A	uc002vmq.2	-	3	633	c.591C>T	c.(589-591)GTC>GTT	p.V197V	EPHA4_uc002vmr.2_Silent_p.V197V|EPHA4_uc010zlm.1_Silent_p.V138V|EPHA4_uc010zln.1_Silent_p.V197V	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	197	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		AGAACACACGGACTGATACCA	0.527													22	51					0	0	0.003330	0	0
COL4A4	1286	broad.mit.edu	37	2	227920826	227920826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:227920826G>A	uc010zlt.1	-	30	3205	c.2551C>T	c.(2551-2553)CCA>TCA	p.P851S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	851	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TTCCCACCTGGAGCACCTAAG	0.567													10	20					0	0	0.001368	0	0
COL4A4	1286	broad.mit.edu	37	2	227954607	227954607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:227954607C>T	uc010zlt.1	-	21	2090	c.1436G>A	c.(1435-1437)GGA>GAA	p.G479E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	479	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TGGGCCTCTTCCTCCTGGGGG	0.478													12	13					0	0	0.001368	0	0
COL4A3	1285	broad.mit.edu	37	2	228128651	228128652	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228128651_228128652GG>AA	uc002vom.1	+	21	1468_1469	c.1306_1307GG>AA	c.(1306-1308)GGA>AAA	p.G436K	COL4A3_uc002von.1_Missense_Mutation_p.G436K|COL4A3_uc002voo.1_Missense_Mutation_p.G436K|COL4A3_uc002vop.1_Missense_Mutation_p.G436K|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	436	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGGACCTCCAGGACCGCCAGGT	0.584													13	29					0	0	0.004672	0	0
C2orf83	56918	broad.mit.edu	37	2	228476116	228476116	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228476116C>T	uc002vph.2	-	3	682	c.447G>A	c.(445-447)GGG>GGA	p.G149G	C2orf83_uc010zlu.1_3'UTR	NM_020161	NP_064546	Q53S99	CB083_HUMAN	hypothetical protein LOC56918 isoform 1	149						membrane	folic acid binding|reduced folate carrier activity				0						GAAGCTAGTTCCCCTGAAACC	0.473													25	46					0	0	0.001786	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881214	228881214	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228881214G>A	uc002vpq.2	-	7	4403	c.4356C>T	c.(4354-4356)CTC>CTT	p.L1452L	SPHKAP_uc002vpp.2_Silent_p.L1452L|SPHKAP_uc010zlx.1_Silent_p.L1452L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1452						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTTCCTCTAGGAGGCTGCTTT	0.498													23	33					0	0	0.002780	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882320	228882320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228882320C>T	uc002vpq.2	-	7	3297	c.3250G>A	c.(3250-3252)GAA>AAA	p.E1084K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1084K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1084K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1084						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGAATGCTTTCGCAGCTGGAG	0.622													20	23					0	0	0.001882	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882609	228882609	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228882609C>T	uc002vpq.2	-	7	3008	c.2961G>A	c.(2959-2961)GGG>GGA	p.G987G	SPHKAP_uc002vpp.2_Silent_p.G987G|SPHKAP_uc010zlx.1_Silent_p.G987G	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	987						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CGGTCCCGCTCCCCTGGCTCT	0.532													18	36					0	0	0.001523	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884867	228884867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:228884867C>T	uc002vpq.2	-	7	750	c.703G>A	c.(703-705)GAA>AAA	p.E235K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E235K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E235K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	235						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TTTATATTTTCATAATCTAGT	0.343													25	36					0	0	0.006320	0	0
TRIP12	9320	broad.mit.edu	37	2	230661346	230661346	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:230661346G>A	uc002vpw.1	-	24	3661	c.3552C>T	c.(3550-3552)ATC>ATT	p.I1184I	TRIP12_uc002vpx.1_Silent_p.I1232I|TRIP12_uc002vpy.1_Silent_p.I914I|TRIP12_uc010zlz.1_RNA	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1184					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		GCTTTAATCTGATCTCTCTGC	0.333													11	19					0	0	0.003163	0	0
SP100	6672	broad.mit.edu	37	2	231380111	231380111	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:231380111T>C	uc002vqt.2	+	25	2537	c.2396T>C	c.(2395-2397)GTT>GCT	p.V799A	SP100_uc002vqu.1_Intron|SP100_uc010fxp.1_Intron	NM_003113	NP_003104	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 2	799	HMG box 2.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		ATTGATGATGTTGTGAAGAAA	0.383													12	32					0	0	0.001368	0	0
B3GNT7	93010	broad.mit.edu	37	2	232263084	232263084	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:232263084G>A	uc002vrs.2	+	2	834	c.654G>A	c.(652-654)AAG>AAA	p.K218K		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	218	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		TGACCCTCAAGGAGATCCACT	0.577													38	65					0	0	0.003610	0	0
ALPPL2	251	broad.mit.edu	37	2	233274533	233274533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:233274533C>T	uc002vss.3	+	11	1603	c.1550C>T	c.(1549-1551)CCT>CTT	p.P517L		NM_031313	NP_112603	P10696	PPBN_HUMAN	placental-like alkaline phosphatase	517					phosphorylation	anchored to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			skin(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)	Amifostine(DB01143)|Levamisole(DB00848)	GCGTTGCTTCCTCTGCTGGCA	0.746													7	0					0	0	0.003080	0	0
ALPI	248	broad.mit.edu	37	2	233322730	233322730	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:233322730G>A	uc002vst.3	+	8	956	c.879G>A	c.(877-879)ACG>ACA	p.T293T	ALPI_uc002vsu.3_Silent_p.T204T	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	293					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCGGAGACACGAAATATGAGA	0.622													12	15					0	0	0.002450	0	0
NGEF	25791	broad.mit.edu	37	2	233757668	233757668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:233757668G>A	uc002vts.2	-	7	1330	c.1082C>T	c.(1081-1083)TCT>TTT	p.S361F	NGEF_uc010zmm.1_Missense_Mutation_p.S84F|NGEF_uc010fyg.1_Missense_Mutation_p.S269F	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	361	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GATGTAGACAGAGAAGTGGTC	0.567													18	31					0	0	0.001523	0	0
USP40	55230	broad.mit.edu	37	2	234402154	234402155	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234402154_234402155GG>AA	uc010zmr.1	-	24	2866_2867	c.2866_2867CC>TT	c.(2866-2868)CCC>TTC	p.P956F	USP40_uc010zms.1_Missense_Mutation_p.P54F|USP40_uc002vun.2_Missense_Mutation_p.P120F|USP40_uc002vuo.1_Missense_Mutation_p.P120F	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	944					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		GTGTCCTGAGGGACCCTGAAGC	0.495													6	19					0	0	0.004672	0	0
UGT1A10	54575	broad.mit.edu	37	2	234545659	234545659	+	Missense_Mutation	SNP	C	T	T	rs144666294		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234545659C>T	uc002vur.2	+	1	537	c.491C>T	c.(490-492)CCC>CTC	p.P164L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Missense_Mutation_p.P164L	NM_019075	NP_061948	Q9HAW8	UD110_HUMAN	UDP glycosyltransferase 1 family, polypeptide	164					flavone metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding	p.P164L(1)		ovary(2)|skin(1)	3		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;1.96e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000468)|Lung(119;0.00381)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTCTCCCTCCCCTCTGTGGTC	0.433													36	73					0	0	0.004289	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581260	234581260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234581260C>T	uc002vus.2	+	1	717	c.680C>T	c.(679-681)GCC>GTC	p.A227V	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.A227V	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	227					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	TTCAAAAATGCCCTAGAAATA	0.428													79	129					0	0	0.003610	0	0
UGT1A5	54579	broad.mit.edu	37	2	234621899	234621899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234621899G>A	uc002vuw.2	+	1	262	c.262G>A	c.(262-264)GAA>AAA	p.E88K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.E88K	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	88					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GACCCAGGACGAATTTGATCG	0.428													22	34					0	0	0.003330	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627556	234627556	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234627556G>A	uc002vux.2	+	1	119	c.90G>A	c.(88-90)AAG>AAA	p.K30K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Silent_p.K30K	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	30					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	AGAGTGGAAAGGTGTTGGTGG	0.667													12	12					0	0	0.001855	0	0
TRPM8	79054	broad.mit.edu	37	2	234871952	234871952	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234871952C>T	uc002vvh.2	+	13	1720	c.1680C>T	c.(1678-1680)CCC>CCT	p.P560P	TRPM8_uc010fyj.2_Silent_p.P248P	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	560	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	CTCGGCACCCCCTGCAAGCTC	0.507													14	18					0	0	0.004990	0	0
TRPM8	79054	broad.mit.edu	37	2	234894424	234894424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:234894424C>T	uc002vvh.2	+	21	2894	c.2854C>T	c.(2854-2856)CCC>TCC	p.P952S	TRPM8_uc010fyj.2_Missense_Mutation_p.P530S|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	952	Extracellular (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GCCCCGGTTCCCCGAGTGGAT	0.547													13	29					0	0	0.001368	0	0
ASB18	401036	broad.mit.edu	37	2	237103554	237103554	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:237103554C>T	uc010znh.1	-	6	1362	c.1362G>A	c.(1360-1362)CAG>CAA	p.Q454Q		NM_212556	NP_997721	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box-containing 18	454	SOCS box.				intracellular signal transduction					ovary(1)	1		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		GTAGGTAATTCTGCAGGGGCT	0.537													8	10					0	0	0.006214	0	0
IQCA1	79781	broad.mit.edu	37	2	237233422	237233422	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:237233422C>T	uc002vvz.1	-	19	2560	c.2378G>A	c.(2377-2379)TGG>TAG	p.W793*	IQCA1_uc002vwb.2_Nonsense_Mutation_p.W801*|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Nonsense_Mutation_p.W752*	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	793							ATP binding			ovary(1)	1						TTTGGCATACCAGTTCTGAAA	0.343													6	5					0	0	0.001984	0	0
CXCR7	57007	broad.mit.edu	37	2	237489121	237489121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:237489121C>T	uc010fyq.2	+	3	243	c.13C>T	c.(13-15)CTC>TTC	p.L5F	CXCR7_uc002vwd.2_Missense_Mutation_p.L5F	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	5	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		GGATCTGCATCTCTTCGACTA	0.488													20	15					0	0	0.001523	0	0
ANKMY1	51281	broad.mit.edu	37	2	241492400	241492400	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:241492400G>A	uc002vyz.1	-	3	373	c.144C>T	c.(142-144)TTC>TTT	p.F48F	ANKMY1_uc002vza.1_Silent_p.F137F|ANKMY1_uc010fzd.1_Silent_p.F137F|ANKMY1_uc002vzb.1_Silent_p.F137F|ANKMY1_uc002vzc.1_Silent_p.F137F|ANKMY1_uc002vzd.1_Silent_p.F137F|ANKMY1_uc010fze.1_Intron|ANKMY1_uc002vze.2_Silent_p.F39F|ANKMY1_uc002vzf.2_Silent_p.F39F	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	48							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		ATGTGCCCGTGAAACTGGAGC	0.552													9	21					0	0	0.006214	0	0
PASK	23178	broad.mit.edu	37	2	242062230	242062230	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:242062230G>A	uc002wao.1	-	12	3081	c.2989C>T	c.(2989-2991)CAA>TAA	p.Q997*	PASK_uc010zol.1_Nonsense_Mutation_p.Q811*|PASK_uc010zom.1_Nonsense_Mutation_p.Q962*|PASK_uc010fzl.1_Nonsense_Mutation_p.Q997*|PASK_uc010zon.1_Nonsense_Mutation_p.Q778*|PASK_uc002wap.2_Nonsense_Mutation_p.Q540*|PASK_uc002waq.2_Nonsense_Mutation_p.Q997*	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	997					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CTGTACTTTTGGGAGTACTCG	0.592													21	30					0	0	0.003330	0	0
PASK	23178	broad.mit.edu	37	2	242065899	242065899	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:242065899G>A	uc002wao.1	-	10	2523	c.2431C>T	c.(2431-2433)CGA>TGA	p.R811*	PASK_uc010zol.1_Nonsense_Mutation_p.R625*|PASK_uc010zom.1_Nonsense_Mutation_p.R776*|PASK_uc010fzl.1_Nonsense_Mutation_p.R811*|PASK_uc010zon.1_Nonsense_Mutation_p.R592*|PASK_uc002wap.2_Nonsense_Mutation_p.R354*|PASK_uc002waq.2_Nonsense_Mutation_p.R811*	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	811					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CGGAACCGTCGGCCTTGGCCA	0.562													10	20					0	0	0.000673	0	0
BOK	666	broad.mit.edu	37	2	242509595	242509595	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:242509595G>A	uc002wbq.2	+	4	651	c.405G>A	c.(403-405)GTG>GTA	p.V135V	BOK_uc002wbr.2_5'Flank	NM_032515	NP_115904	Q9UMX3	BOK_HUMAN	BCL2-related ovarian killer	135					activation of caspase activity|cell proliferation|signal transduction by p53 class mediator resulting in induction of apoptosis	mitochondrial membrane|nucleus				ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.04e-33)|all cancers(36;7.87e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.52e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.64e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0835)		GGCTGGCCGTGGACTGTGTGA	0.662													3	6					0	0	0.004672	0	0
ZNF343	79175	broad.mit.edu	37	20	2473352	2473352	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:2473352G>A	uc002wge.1	-	5	785	c.297C>T	c.(295-297)CTC>CTT	p.L99L	ZNF343_uc010gao.1_Silent_p.L99L|ZNF343_uc002wgd.1_Silent_p.L9L	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	99	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TACCCAATGAGAGAAGATTCC	0.284													22	14					0	0	0.001882	0	0
CPXM1	56265	broad.mit.edu	37	20	2778807	2778807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:2778807G>A	uc002wgu.2	-	4	645	c.581C>T	c.(580-582)TCT>TTT	p.S194F	CPXM1_uc010gas.2_Missense_Mutation_p.S194F	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	194	F5/8 type C.				cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						CCTCCAGACAGAGTTCCTGCC	0.622													15	12					0	0	0.006122	0	0
HSPA12B	116835	broad.mit.edu	37	20	3725570	3725570	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:3725570G>A	uc002wjd.2	+	5	391	c.288G>A	c.(286-288)CCG>CCA	p.P96P	HSPA12B_uc010zqi.1_Silent_p.P96P|HSPA12B_uc002wje.2_Silent_p.P9P|HSPA12B_uc010zqj.1_5'UTR	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	96							ATP binding				0						GCGGAGACCCGGGCGTGGCCC	0.557													22	11					0	0	0.001882	0	0
CHGB	1114	broad.mit.edu	37	20	5904347	5904347	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:5904347G>A	uc002wmg.2	+	4	1863	c.1557G>A	c.(1555-1557)GGG>GGA	p.G519G	CHGB_uc010zqz.1_Silent_p.G202G	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	519						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AGAGATTAGGGGAACTGTTCA	0.448													7	4					0	0	0.003080	0	0
TRMT6	51605	broad.mit.edu	37	20	5923407	5923407	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:5923407G>A	uc002wmh.1	-	7	815	c.693C>T	c.(691-693)TAC>TAT	p.Y231Y	TRMT6_uc010zra.1_Silent_p.Y61Y|TRMT6_uc010gbn.1_Silent_p.Y61Y|TRMT6_uc010gbo.1_RNA	NM_015939	NP_057023	Q9UJA5	TRM6_HUMAN	tRNA methyltransferase 6	231					regulation of translational initiation|tRNA processing	nucleus	protein binding|translation initiation factor activity			pancreas(1)	1						CTCCTCCAGGGTATAGCTGAA	0.458													50	15					0	0	0.003610	0	0
PLCB4	5332	broad.mit.edu	37	20	9404516	9404516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:9404516G>A	uc002wnf.2	+	26	2541	c.2405G>A	c.(2404-2406)CGA>CAA	p.R802Q	PLCB4_uc010gbw.1_Missense_Mutation_p.R802Q|PLCB4_uc010gbx.2_Missense_Mutation_p.R814Q|PLCB4_uc002wne.2_Missense_Mutation_p.R802Q|PLCB4_uc002wnh.2_Missense_Mutation_p.R649Q	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	802					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTTCCCTTCGAAATGAGGGA	0.408													8	7					0	0	0.003080	0	0
C20orf103	24141	broad.mit.edu	37	20	9496670	9496670	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:9496670C>T	uc002wni.1	+	3	490	c.261C>T	c.(259-261)ATC>ATT	p.I87I	C20orf103_uc010zrc.1_Intron	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	87	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			AGGCCGATATCGCATTGACCC	0.542													3	3					0	0	0.000248	0	0
PAK7	57144	broad.mit.edu	37	20	9560902	9560902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:9560902C>T	uc002wnl.2	-	5	1425	c.880G>A	c.(880-882)GAA>AAA	p.E294K	PAK7_uc002wnk.2_Missense_Mutation_p.E294K|PAK7_uc002wnj.2_Missense_Mutation_p.E294K|PAK7_uc010gby.1_Missense_Mutation_p.E294K	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	294	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATCATCGGTTCCTGGAGTCCC	0.552													45	20					0	0	0.003610	0	0
C20orf94	128710	broad.mit.edu	37	20	10604013	10604013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:10604013G>A	uc010zre.1	+	8	1393	c.1213G>A	c.(1213-1215)GAA>AAA	p.E405K		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	405							protein binding				0						AAAGAAATACGAAAGAGGCCA	0.448													6	3					0	0	0.001984	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													46	16					0	0	0.002852	0	0
ISM1	140862	broad.mit.edu	37	20	13280026	13280026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:13280026C>T	uc010gce.1	+	6	1321	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	439	AMOP.					extracellular region					0						GGCCCGGCCTCCCAACAACGG	0.567													16	38					0	0	0.004007	0	0
ESF1	51575	broad.mit.edu	37	20	13695710	13695710	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:13695710G>A	uc002woj.2	-	14	2475	c.2367C>T	c.(2365-2367)ATC>ATT	p.I789I		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	789	Lys-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TCTCCTCAAGGATTTTTTCCA	0.403													31	92					0	0	0.001512	0	0
MACROD2	140733	broad.mit.edu	37	20	16030510	16030510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:16030510G>A	uc002wou.2	+	18	1600	c.1336G>A	c.(1336-1338)GGA>AGA	p.G446R	MACROD2_uc002wot.2_Missense_Mutation_p.G423R|MACROD2_uc002woz.2_Missense_Mutation_p.G211R|MACROD2_uc002wpb.2_Missense_Mutation_p.G188R|MACROD2_uc002wpd.2_Missense_Mutation_p.G96R	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	446											0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				ACAAAGAAATGGAACTAAATG	0.512													7	27					0	0	0.006214	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033165	20033165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:20033165C>T	uc002wrs.2	-	2	337	c.305G>A	c.(304-306)GGA>GAA	p.G102E	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.G90E	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	102					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						GGCACCGTTTCCATGGTGACC	0.612													11	50					0	0	0.001368	0	0
C20orf26	26074	broad.mit.edu	37	20	20037323	20037323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:20037323G>A	uc002wru.2	+	2	102	c.26G>A	c.(25-27)GGA>GAA	p.G9E	C20orf26_uc010gcw.1_Intron|C20orf26_uc010zse.1_Missense_Mutation_p.G9E|C20orf26_uc010zsf.1_Missense_Mutation_p.G9E|CRNKL1_uc002wrs.2_5'Flank|CRNKL1_uc002wrt.1_5'Flank	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	9										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TCTCCAAGAGGAAAGGTAGAA	0.358													34	33					0	0	0.004289	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20563781	20563781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:20563781C>T	uc002wrz.2	-	20	2763	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K	RALGAPA2_uc010gcx.2_Missense_Mutation_p.E578K|RALGAPA2_uc010zsg.1_Missense_Mutation_p.E322K	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	874					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTATTCAGTTCTGGGTCTTCC	0.488													8	56					0	0	0.004482	0	0
PAX1	5075	broad.mit.edu	37	20	21687255	21687255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:21687255G>A	uc002wsj.2	+	2	520	c.466G>A	c.(466-468)GAG>AAG	p.E156K	PAX1_uc010zsl.1_Missense_Mutation_p.E156K|PAX1_uc010zsm.1_Missense_Mutation_p.E132K	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	156	Paired.				regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						GCGCTACAACGAGACCGGCTC	0.652													24	68					0	0	0.003330	0	0
FOXA2	3170	broad.mit.edu	37	20	22562714	22562714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:22562714G>A	uc002wsn.2	-	3	1338	c.1148C>T	c.(1147-1149)TCC>TTC	p.S383F	FOXA2_uc002wsm.2_Missense_Mutation_p.S389F	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	383	Transactivation domain 2 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					CTGCTCCGAGGACATGAGGTT	0.552													25	10					0	0	0.002780	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524125	24524125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:24524125G>A	uc002wtw.1	+	2	1025	c.392G>A	c.(391-393)GGG>GAG	p.G131E		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	131	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						TACCCGGATGGGAAGTTCATT	0.597													60	117					0	0	0.003610	0	0
TMEM90B	79953	broad.mit.edu	37	20	24565548	24565548	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:24565548G>A	uc002wtw.1	+	3	1170	c.537G>A	c.(535-537)CGG>CGA	p.R179R		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	179	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						TGCCCCCGCGGGACCACCTGG	0.557													39	94					0	0	0.005524	0	0
NINL	22981	broad.mit.edu	37	20	25442247	25442247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:25442247C>T	uc002wux.1	-	21	3681	c.3607G>A	c.(3607-3609)GTT>ATT	p.V1203I	NINL_uc010gdn.1_Missense_Mutation_p.V854I|NINL_uc002wuw.1_5'Flank	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	1203	Potential.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TCAAGTTCAACTCTAAGTTTT	0.438													36	32					0	0	0.006230	0	0
NINL	22981	broad.mit.edu	37	20	25507211	25507211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:25507211C>T	uc002wux.1	-	2	87	c.13G>A	c.(13-15)GAG>AAG	p.E5K	NINL_uc010gdn.1_Missense_Mutation_p.E5K|NINL_uc010gdo.1_5'UTR|NINL_uc010ztf.1_Missense_Mutation_p.E21K	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	5					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						TAGTGGTTCTCTTCTTCATCC	0.572													39	94					0	0	0.002222	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333													10	86					0	0	0.000673	0	0
FRG1B	284802	broad.mit.edu	37	20	29628282	29628282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:29628282G>A	uc010ztl.1	+	3	226	c.194G>A	c.(193-195)GGG>GAG	p.G65E	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.G17E					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						AATGAAGCAGGGGACATAGAA	0.373													4	69					0	0	0.000602	0	0
MYLK2	85366	broad.mit.edu	37	20	30419644	30419644	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:30419644C>T	uc002wwq.2	+	11	1665	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	MYLK2_uc002wws.2_Silent_p.I138I|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	521	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCAACCTCATCGTCAAGGACC	0.532													41	24					0	0	0.001951	0	0
PLAGL2	5326	broad.mit.edu	37	20	30784839	30784839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:30784839G>A	uc002wxn.2	-	3	1124	c.907C>T	c.(907-909)CCT>TCT	p.P303S		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	303						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GGCATGGTAGGGATGTGGGCA	0.612													65	90					0	0	0.003610	0	0
POFUT1	23509	broad.mit.edu	37	20	30804422	30804422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:30804422C>T	uc002wxp.2	+	4	489	c.440C>T	c.(439-441)CCC>CTC	p.P147L	POFUT1_uc002wxo.2_Missense_Mutation_p.P147L|POFUT1_uc010ztt.1_Missense_Mutation_p.P39L|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	147					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GAAGGAAACCCCTTTGGCCCA	0.522													21	98					0	0	0.004656	0	0
KIF3B	9371	broad.mit.edu	37	20	30919041	30919041	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:30919041G>A	uc002wxq.2	+	9	2330	c.2163G>A	c.(2161-2163)AGG>AGA	p.R721R	KIF3B_uc010ztw.1_Silent_p.R659R	NM_004798	NP_004789	O15066	KIF3B_HUMAN	kinesin family member 3B	721	Globular.				anterograde axon cargo transport|blood coagulation|determination of left/right symmetry|mitotic centrosome separation|plus-end-directed vesicle transport along microtubule|spindle assembly involved in mitosis	centrosome|cytosol|kinesin II complex|plus-end kinesin complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|Rho GTPase binding			central_nervous_system(3)|ovary(2)	5			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AAAGTGGAAGGAAGTCGGGAT	0.483													53	80					0	0	0.003610	0	0
MAPRE1	22919	broad.mit.edu	37	20	31424587	31424588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31424587_31424588CC>TT	uc002wyh.2	+	4	554_555	c.415_416CC>TT	c.(415-417)CCT>TTT	p.P139F		NM_012325	NP_036457	Q15691	MARE1_HUMAN	microtubule-associated protein, RP/EB family,	139	Interaction with MTUS2/TIP150.				cell division|cell proliferation|G2/M transition of mitotic cell cycle|mitotic prometaphase|negative regulation of microtubule polymerization|protein localization to microtubule	centrosome|cortical microtubule cytoskeleton|cytosol	microtubule plus-end binding|protein C-terminus binding				0						TGCAGTGGCTCCTTCCCTTGTT	0.436													38	79					0	0	0.004672	0	0
SUN5	140732	broad.mit.edu	37	20	31585481	31585481	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31585481A>T	uc002wyi.2	-	6	446	c.353T>A	c.(352-354)TTT>TAT	p.F118Y		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	118					spermatogenesis					skin(1)	1						GTGAATAGAAAACATCCAGAA	0.358													22	48					0	0	0.002780	0	0
BPIL1	80341	broad.mit.edu	37	20	31600668	31600668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31600668G>A	uc002wyj.2	+	4	457	c.263G>A	c.(262-264)GGA>GAA	p.G88E		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	88						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GCTGGTTTCGGAGTGCGCCTG	0.532													47	226					0	0	0.003610	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31958389	31958389	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31958389C>A	uc010gek.2	-	12	1474	c.1350G>T	c.(1348-1350)ACG>ACT	p.T450T	CDK5RAP1_uc002wyy.2_Silent_p.T346T|CDK5RAP1_uc002wyz.2_Silent_p.T436T|CDK5RAP1_uc002wza.2_Silent_p.T436T|CDK5RAP1_uc010gel.2_Silent_p.T345T|CDK5RAP1_uc010gem.2_Silent_p.T359T|CDK5RAP1_uc002wzc.1_Silent_p.T436T|CDK5RAP1_uc002wzb.1_Silent_p.T71T	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	450					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						GATCTTCCTCCGTCTCACCAC	0.527													7	216					0.00307968	0.00441594	0.003080	1	0
CDK5RAP1	51654	broad.mit.edu	37	20	31967359	31967359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31967359G>A	uc010gek.2	-	9	1181	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.R249C|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.R339C|CDK5RAP1_uc002wza.2_Missense_Mutation_p.R339C|CDK5RAP1_uc010gel.2_Missense_Mutation_p.R248C|CDK5RAP1_uc010gem.2_Intron|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.R339C	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	353					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						TGAGCAAAACGAAGTCCTCCT	0.483													46	34					0	0	0.002852	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31975249	31975249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31975249G>A	uc010gek.2	-	6	759	c.635C>T	c.(634-636)CCC>CTC	p.P212L	CDK5RAP1_uc002wyy.2_Missense_Mutation_p.P122L|CDK5RAP1_uc002wyz.2_Missense_Mutation_p.P212L|CDK5RAP1_uc002wza.2_Missense_Mutation_p.P212L|CDK5RAP1_uc010gel.2_Missense_Mutation_p.P121L|CDK5RAP1_uc010gem.2_Missense_Mutation_p.P212L|CDK5RAP1_uc002wzc.1_Missense_Mutation_p.P212L|CDK5RAP1_uc010gen.2_Missense_Mutation_p.P212L	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	212	MTTase N-terminal.				brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						CAGCAGCCGGGGAAGGTCCCG	0.567													62	108					0	0	0.003610	0	0
SNTA1	6640	broad.mit.edu	37	20	31997998	31997998	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:31997998G>T	uc002wzd.1	-	6	1452	c.1180C>A	c.(1180-1182)CGC>AGC	p.R394S	SNTA1_uc010zuf.1_Missense_Mutation_p.R319S	NM_003098	NP_003089	Q13424	SNTA1_HUMAN	acidic alpha 1 syntrophin	394	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|sarcolemma	actin binding|calmodulin binding			skin(1)	1						ACAAGCTGGCGGGTCCAGGCA	0.637													10	20					4.3838e-07	6.34584e-07	0.001855	1	0
FAM83C	128876	broad.mit.edu	37	20	33874493	33874493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:33874493C>T	uc010zux.1	-	4	2207	c.2089G>A	c.(2089-2091)GAG>AAG	p.E697K	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.E352K	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	697										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CCCCCAGGCTCAGTTCCCTGC	0.587													48	111					0	0	0.003610	0	0
UQCC	55245	broad.mit.edu	37	20	33891791	33891791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:33891791G>A	uc002xcd.2	-	10	914	c.847C>T	c.(847-849)CCT>TCT	p.P283S	UQCC_uc010zuy.1_Missense_Mutation_p.P184S|UQCC_uc010zuz.1_Missense_Mutation_p.P128S|UQCC_uc010zva.1_Missense_Mutation_p.P146S|UQCC_uc002xce.2_Missense_Mutation_p.P256S|UQCC_uc002xcg.2_Missense_Mutation_p.P149S|UQCC_uc010gfb.2_Missense_Mutation_p.P257S|UQCC_uc010zvb.1_Missense_Mutation_p.P215S|UQCC_uc002xcf.2_Missense_Mutation_p.P171S|UQCC_uc002xch.2_RNA|UQCC_uc002xcc.2_Missense_Mutation_p.P96S	NM_018244	NP_060714	Q9NVA1	UQCC_HUMAN	basic FGF-repressed Zic binding protein isoform	283						cytoplasmic membrane-bounded vesicle				breast(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ATGCTCTGAGGATTCTTCTCC	0.612											OREG0025888	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	106					0	0	0.006999	0	0
PHF20	51230	broad.mit.edu	37	20	34446251	34446251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:34446251G>A	uc002xek.1	+	5	479	c.368G>A	c.(367-369)GGA>GAA	p.G123E	PHF20_uc002xei.1_Missense_Mutation_p.G123E|PHF20_uc010gfo.1_Missense_Mutation_p.G123E|PHF20_uc002xej.1_Intron|PHF20_uc002xel.1_5'UTR	NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					TTTTATGATGGAGTAGTTCAG	0.303													39	75					0	0	0.002222	0	0
C20orf152	140894	broad.mit.edu	37	20	34556625	34556625	+	Translation_Start_Site	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:34556625T>A	uc002xes.1	+	1	97	c.-59T>A	c.(-61--57)ATTTG>ATATG		C20orf152_uc002xer.1_Translation_Start_Site|C20orf152_uc010gfp.1_RNA			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;												0	Breast(12;0.00631)					GGGGAAAAATTTGTAGTCCTC	0.458													8	13					0	0	0.003080	0	0
DLGAP4	22839	broad.mit.edu	37	20	35125333	35125333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:35125333G>A	uc002xff.2	+	8	2309	c.1874G>A	c.(1873-1875)GGA>GAA	p.G625E	DLGAP4_uc010zvp.1_Missense_Mutation_p.G625E|DLGAP4_uc002xfg.2_5'UTR|DLGAP4_uc002xfh.2_Missense_Mutation_p.G86E|DLGAP4_uc002xfi.2_5'UTR|DLGAP4_uc002xfj.2_5'Flank	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	625					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				ACACGGGGTGGAGTCGCCCCA	0.652													15	43					0	0	0.002450	0	0
GHRH	2691	broad.mit.edu	37	20	35882724	35882724	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:35882724T>C	uc002xgr.2	-	3	197	c.197A>G	c.(196-198)AAC>AGC	p.N66S	GHRH_uc002xgs.2_Missense_Mutation_p.N66S|GHRH_uc002xgt.2_Missense_Mutation_p.N66S	NM_021081	NP_066567	P01286	SLIB_HUMAN	growth hormone releasing hormone preproprotein	66					activation of adenylate cyclase activity by G-protein signaling pathway|adenohypophysis development|growth hormone secretion|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of circadian sleep/wake cycle, REM sleep|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to food	extracellular space|terminal button	growth hormone-releasing hormone activity|growth hormone-releasing hormone receptor binding			ovary(1)	1		Myeloproliferative disorder(115;0.00878)				TCGCTCTTGGTTGCTCTCTCT	0.498													29	209					0	0	0.002096	0	0
VSTM2L	128434	broad.mit.edu	37	20	36560175	36560175	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:36560175G>A	uc002xhk.3	+	2	514	c.260G>A	c.(259-261)TGG>TAG	p.W87*		NM_080607	NP_542174	Q96N03	VTM2L_HUMAN	V-set and transmembrane domain containing 2 like	87	Ig-like.									ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				CACCGGGACTGGACCGACAAG	0.657													14	53					0	0	0.001855	0	0
LBP	3929	broad.mit.edu	37	20	36999435	36999435	+	Silent	SNP	C	T	T	rs146457097	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:36999435C>T	uc002xic.1	+	11	1238	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	401					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TCACTGGGTTCCTGAAGCCAG	0.527													52	232					0	0	0.003610	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990831	39990831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:39990831C>T	uc002xjy.1	-	4	1602	c.1378G>A	c.(1378-1380)GGG>AGG	p.G460R		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	460						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				ACTCCCCACCCCCCCATGTCC	0.637													47	77					0	0	0.003610	0	0
PTPRT	11122	broad.mit.edu	37	20	40710652	40710652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:40710652C>T	uc002xkg.2	-	30	4326	c.4142G>A	c.(4141-4143)GGG>GAG	p.G1381E	PTPRT_uc010ggj.2_Missense_Mutation_p.G1400E|PTPRT_uc010ggi.2_Missense_Mutation_p.G584E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1381	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACGGCCTCCCCCATTTCTAAA	0.493													55	58					0	0	0.003610	0	0
PTPRT	11122	broad.mit.edu	37	20	40980844	40980844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:40980844C>T	uc002xkg.2	-	10	1826	c.1642G>A	c.(1642-1644)GAA>AAA	p.E548K	PTPRT_uc010ggj.2_Missense_Mutation_p.E548K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	548	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGTGGGTTTCATTCCGGAGC	0.572													43	69					0	0	0.002522	0	0
PTPRT	11122	broad.mit.edu	37	20	41306689	41306689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:41306689C>T	uc002xkg.2	-	7	1154	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PTPRT_uc010ggj.2_Missense_Mutation_p.E324K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	324	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATTCCACTTCCTTCAGGATG	0.567													18	93					0	0	0.007413	0	0
L3MBTL	26013	broad.mit.edu	37	20	42169682	42169682	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:42169682C>T	uc010zwh.1	+	22	2483	c.2437C>T	c.(2437-2439)CTG>TTG	p.L813L	L3MBTL_uc002xkl.2_Silent_p.L745L|L3MBTL_uc002xkm.2_3'UTR|L3MBTL_uc010ggl.2_3'UTR|L3MBTL_uc002xkn.1_Intron|L3MBTL_uc002xko.2_3'UTR|L3MBTL_uc002xkp.2_Silent_p.L133L|SGK2_uc002xkq.1_Intron	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	Error:Variant_position_missing_in_Q9Y468_after_alignment					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			AAAAGGCATCCTGGAGACAGG	0.473													23	93					0	0	0.003330	0	0
IFT52	51098	broad.mit.edu	37	20	42265791	42265791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:42265791C>T	uc002xkw.2	+	12	1140	c.1018C>T	c.(1018-1020)CCT>TCT	p.P340S	IFT52_uc002xky.2_Missense_Mutation_p.P340S|IFT52_uc002xkx.2_RNA|IFT52_uc010ggn.2_Missense_Mutation_p.P316S|IFT52_uc002xkz.2_Missense_Mutation_p.P340S	NM_016004	NP_057088	Q9Y366	IFT52_HUMAN	intraflagellar transport 52 homolog	340						intraflagellar transport particle B|microtubule-based flagellum	protein C-terminus binding			ovary(2)	2		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TTAGGTTTTTCCTCCCAGTTT	0.398													50	49					0	0	0.003610	0	0
TOX2	84969	broad.mit.edu	37	20	42694442	42694442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:42694442G>A	uc002xlf.3	+	6	1014	c.997G>A	c.(997-999)GGC>AGC	p.G333S	TOX2_uc010ggo.2_Missense_Mutation_p.G351S|TOX2_uc002xle.3_Missense_Mutation_p.G309S|TOX2_uc010ggp.2_Missense_Mutation_p.G309S|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Missense_Mutation_p.G229S	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			TGCCATGCCAGGCCTGGCCTC	0.652													103	96					0	0	0.003610	0	0
TOX2	84969	broad.mit.edu	37	20	42697297	42697297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:42697297C>T	uc002xlf.3	+	8	1455	c.1438C>T	c.(1438-1440)CCC>TCC	p.P480S	TOX2_uc010ggo.2_Missense_Mutation_p.P498S|TOX2_uc002xle.3_Missense_Mutation_p.P456S|TOX2_uc010ggp.2_Missense_Mutation_p.P456S|TOX2_uc002xlg.2_Missense_Mutation_p.P297S|TOX2_uc010zwk.1_Missense_Mutation_p.P376S	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	480					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			CAGCCTGCTCCCCAGGGACAA	0.632													20	18					0	0	0.001882	0	0
HNF4A	3172	broad.mit.edu	37	20	43052704	43052704	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:43052704C>T	uc002xma.2	+	8	1028	c.939C>T	c.(937-939)TCC>TCT	p.S313S	HNF4A_uc002xlt.2_Silent_p.S291S|HNF4A_uc002xlu.2_Silent_p.S291S|HNF4A_uc002xlv.2_Silent_p.S291S|HNF4A_uc002xly.2_Silent_p.S313S|HNF4A_uc002xlz.2_Silent_p.S313S|HNF4A_uc010ggq.2_Silent_p.S306S	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	313					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GGCTGCGTTCCCAGGTGCAGG	0.612													57	312					0	0	0.003610	0	0
RIMS4	140730	broad.mit.edu	37	20	43386794	43386794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:43386794C>T	uc002xms.2	-	3	268	c.268G>A	c.(268-270)GAC>AAC	p.D90N	RIMS4_uc010ggu.2_Missense_Mutation_p.D91N	NM_182970	NP_892015	Q9H426	RIMS4_HUMAN	regulating synaptic membrane exocytosis 4	90					exocytosis|neurotransmitter transport	cell junction|synapse				ovary(4)|central_nervous_system(1)	5		Myeloproliferative disorder(115;0.0122)				AACTGGGCGTCCGACGCCAGG	0.582													7	44					0	0	0.001984	0	0
PI3	5266	broad.mit.edu	37	20	43804764	43804764	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:43804764C>T	uc002xng.2	+	2	366	c.342C>T	c.(340-342)TTC>TTT	p.F114F		NM_002638	NP_002629	P19957	ELAF_HUMAN	elafin preproprotein	114	WAP.				copulation	proteinaceous extracellular matrix	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				TGGCCTGTTTCGTTCCCCAGT	0.567													44	68					0	0	0.003610	0	0
SEMG1	6406	broad.mit.edu	37	20	43836048	43836048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:43836048C>T	uc002xni.2	+	2	167	c.110C>T	c.(109-111)TCC>TTC	p.S37F	SEMG1_uc002xnj.2_Missense_Mutation_p.S37F|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.S37F	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	37					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AGTGAATTTTCCCAATTTCCA	0.403													87	99					0	0	0.003610	0	0
SEMG2	6407	broad.mit.edu	37	20	43850450	43850450	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:43850450C>T	uc010ggz.2	+	2	234	c.177C>T	c.(175-177)TCC>TCT	p.S59S	SEMG2_uc002xnk.2_Silent_p.S59S|SEMG2_uc002xnl.2_Silent_p.S59S	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	59					sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ATACTAAATCCAAAGGCAGTT	0.403													38	81					0	0	0.006230	0	0
PIGT	51604	broad.mit.edu	37	20	44052929	44052929	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:44052929C>T	uc002xoh.1	+	10	1381	c.1308C>T	c.(1306-1308)GCC>GCT	p.A436A	PIGT_uc010ghf.1_Silent_p.A389A|PIGT_uc002xoj.1_Silent_p.A369A|PIGT_uc002xok.1_Silent_p.A401A|PIGT_uc010zwu.1_Silent_p.A174A|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Silent_p.A174A|PIGT_uc010zww.1_Silent_p.A380A|PIGT_uc010zwx.1_Silent_p.A271A|PIGT_uc010zwy.1_Silent_p.A334A|PIGT_uc010zwz.1_Silent_p.A174A|PIGT_uc010zxa.1_Silent_p.A274A|PIGT_uc002xol.1_Silent_p.A225A|PIGT_uc010zxb.1_Silent_p.A112A|PIGT_uc002xom.1_Silent_p.A28A	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	436	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				AGCTGCCGGCCAACTCAGTCA	0.582													30	55					0	0	0.001512	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44505700	44505700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:44505700C>T	uc002xqd.2	+	2	706	c.503C>T	c.(502-504)CCT>CTT	p.P168L	ZSWIM3_uc010zxg.1_Missense_Mutation_p.P162L	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	168							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				GGCATCACTCCTTCTGACCTG	0.493													41	65					0	0	0.002522	0	0
PREX1	57580	broad.mit.edu	37	20	47262529	47262529	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:47262529G>A	uc002xtw.1	-	26	3395	c.3372C>T	c.(3370-3372)GCC>GCT	p.A1124A	PREX1_uc002xtv.1_Silent_p.A421A	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1124					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCAGGGAGGAGGCCTCCTCAG	0.597													42	42					0	0	0.002222	0	0
PREX1	57580	broad.mit.edu	37	20	47268117	47268117	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:47268117G>A	uc002xtw.1	-	22	2495	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F	PREX1_uc002xtv.1_Silent_p.F121F	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	824					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			ACAGCAGTgggaaggctggaa	0.308													33	28					0	0	0.002096	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47648699	47648699	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:47648699A>T	uc002xtx.3	+	38	5329	c.5177A>T	c.(5176-5178)GAA>GTA	p.E1726V	ARFGEF2_uc010zyf.1_Missense_Mutation_p.E1019V	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1726					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			ATAAATGATGAAAAGGTATGA	0.338													38	76					0	0	0.006230	0	0
KCNB1	3745	broad.mit.edu	37	20	47989844	47989844	+	Silent	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:47989844A>C	uc002xur.1	-	2	2417	c.2253T>G	c.(2251-2253)GGT>GGG	p.G751G	KCNB1_uc002xus.1_Silent_p.G751G	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	751	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACTGGTGGACACCCGCCTCAA	0.572													16	191					0	0	0.003610	0	0
FAM65C	140876	broad.mit.edu	37	20	49218928	49218928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:49218928C>T	uc002xvm.2	-	13	1646	c.1328G>A	c.(1327-1329)CGG>CAG	p.R443Q	FAM65C_uc010zyt.1_Missense_Mutation_p.R447Q|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.R443Q	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	443										ovary(2)	2						GGGGTCCTCCCGAGCCTCCTC	0.662													21	36					0	0	0.002299	0	0
DPM1	8813	broad.mit.edu	37	20	49551736	49551736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:49551736G>A	uc002xvw.1	-	9	716	c.716C>T	c.(715-717)TCC>TTC	p.S239F	DPM1_uc002xvv.1_Missense_Mutation_p.S169F|DPM1_uc002xvx.1_RNA	NM_003859	NP_003850	O60762	DPM1_HUMAN	dolichyl-phosphate mannosyltransferase 1	239					C-terminal protein lipidation|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|protein N-linked glycosylation via asparagine|protein O-linked mannosylation	dolichol-phosphate-mannose synthase complex|endoplasmic reticulum membrane|membrane fraction	dolichyl-phosphate beta-D-mannosyltransferase activity|dolichyl-phosphate-mannose-protein mannosyltransferase activity|protein binding			ovary(1)	1						TCCCAACTTGGATTCACCATA	0.303													42	172					0	0	0.003214	0	0
KCNG1	3755	broad.mit.edu	37	20	49620632	49620632	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:49620632G>A	uc002xwa.3	-	3	1781	c.1486C>T	c.(1486-1488)CAG>TAG	p.Q496*		NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	496	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						TCACTGTCCTGGGACACGCTC	0.597													20	46					0	0	0.002299	0	0
NFATC2	4773	broad.mit.edu	37	20	50092036	50092036	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:50092036G>A	uc002xwd.2	-	4	1714	c.1494C>T	c.(1492-1494)GTC>GTT	p.V498V	NFATC2_uc002xwc.2_Silent_p.V498V|NFATC2_uc010zyv.1_Silent_p.V279V|NFATC2_uc010zyw.1_Silent_p.V279V|NFATC2_uc010zyx.1_Silent_p.V478V|NFATC2_uc010zyy.1_Silent_p.V279V|NFATC2_uc010zyz.1_Silent_p.V279V|NFATC2_uc002xwe.2_Silent_p.V478V	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	498	RHD.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GTATCTCCAGGACTTTGGTGT	0.577													70	157					0	0	0.003610	0	0
ZNF217	7764	broad.mit.edu	37	20	52192387	52192387	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:52192387G>A	uc002xwq.3	-	3	3187	c.2916C>T	c.(2914-2916)TTC>TTT	p.F972F	ZNF217_uc010gij.1_Silent_p.F964F	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	972					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			TGGAGCTCAGGAACCTTGGTT	0.552													12	76					0	0	0.001368	0	0
CSTF1	1477	broad.mit.edu	37	20	54974321	54974321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:54974321C>T	uc002xxl.1	+	5	1144	c.944C>T	c.(943-945)TCC>TTC	p.S315F	CSTF1_uc002xxm.1_Missense_Mutation_p.S315F|CSTF1_uc002xxn.1_Missense_Mutation_p.S315F|CSTF1_uc002xxo.1_Missense_Mutation_p.S258F	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	315	WD 5.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			GCCATTTTTTCCAAAAATTCT	0.403													19	66					0	0	0.007413	0	0
CASS4	57091	broad.mit.edu	37	20	55020983	55020983	+	Missense_Mutation	SNP	C	T	T	rs139063252		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:55020983C>T	uc002xxp.2	+	4	712	c.487C>T	c.(487-489)CGG>TGG	p.R163W	CASS4_uc002xxq.3_Missense_Mutation_p.R163W|CASS4_uc002xxr.2_Missense_Mutation_p.R163W|CASS4_uc010zze.1_Missense_Mutation_p.R109W|CASS4_uc010gio.2_Missense_Mutation_p.R163W	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	163					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CAGACCTGTCCGGGCCTCACT	0.567													29	30					0	0	0.003271	0	0
CTCFL	140690	broad.mit.edu	37	20	56083709	56083709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:56083709G>A	uc010gix.1	-	8	2289	c.1627C>T	c.(1627-1629)CCG>TCG	p.P543S	CTCFL_uc010giw.1_Missense_Mutation_p.P543S|CTCFL_uc002xym.2_Missense_Mutation_p.P543S|CTCFL_uc010giz.1_Missense_Mutation_p.P131S|CTCFL_uc010giy.1_Missense_Mutation_p.P213S|CTCFL_uc010gja.1_Missense_Mutation_p.P493S|CTCFL_uc010gjb.1_Missense_Mutation_p.P543S|CTCFL_uc010gjc.1_Missense_Mutation_p.P543S|CTCFL_uc010gjd.1_Missense_Mutation_p.P543S|CTCFL_uc010gje.2_Missense_Mutation_p.P543S|CTCFL_uc010gjf.2_Missense_Mutation_p.P338S|CTCFL_uc010gjg.2_Missense_Mutation_p.P275S|CTCFL_uc010gjh.1_Missense_Mutation_p.P399S|CTCFL_uc010gji.1_Missense_Mutation_p.P338S|CTCFL_uc010gjj.1_Missense_Mutation_p.P543S|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	543					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			TAAACAGTCGGGATGAAATTT	0.438													25	197					0	0	0.004656	0	0
PCK1	5105	broad.mit.edu	37	20	56140548	56140548	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:56140548G>A	uc002xyn.3	+	10	1720	c.1557G>A	c.(1555-1557)AAG>AAA	p.K519K	PCK1_uc010zzm.1_Silent_p.K202K	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	519					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GGTTCCGGAAGGACAAGGAAG	0.547													20	48					0	0	0.001216	0	0
GNAS	2778	broad.mit.edu	37	20	57415767	57415767	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:57415767G>A	uc002xzt.2	+	1	973	c.606G>A	c.(604-606)AGG>AGA	p.R202R	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			AAGATCCAAGGGACCCCGAAG	0.682			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			5	23					0	0	0.000602	0	0
TUBB1	81027	broad.mit.edu	37	20	57599608	57599608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:57599608G>A	uc002yak.2	+	4	1395	c.1126G>A	c.(1126-1128)GAG>AAG	p.E376K		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	376					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	GGCCATCCAAGAGATCTTTAA	0.527													27	24					0	0	0.004656	0	0
SYCP2	10388	broad.mit.edu	37	20	58442899	58442899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:58442899G>A	uc002yaz.2	-	38	4131	c.3992C>T	c.(3991-3993)TCT>TTT	p.S1331F		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1331					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TACACTTTCAGACACTAAAAA	0.323													8	50					0	0	0.004482	0	0
C20orf197	284756	broad.mit.edu	37	20	58645808	58645808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:58645808G>A	uc002ybj.1	+	4	532	c.226G>A	c.(226-228)GGA>AGA	p.G76R		NM_173644	NP_775915	Q8N268	CT197_HUMAN	hypothetical protein LOC284756	76										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(7;2.33e-09)			GAAGATAGAGGGACTTCTGCA	0.313													26	33					0	0	0.006320	0	0
CDH4	1002	broad.mit.edu	37	20	60448830	60448830	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:60448830C>T	uc002ybn.1	+	7	938	c.924C>T	c.(922-924)ACC>ACT	p.T308T	CDH4_uc002ybp.1_Silent_p.T234T	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	308	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			ACGACAGCACCACGGCCAACG	0.607													48	80					0	0	0.003214	0	0
CDH4	1002	broad.mit.edu	37	20	60504813	60504813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:60504813G>A	uc002ybn.1	+	13	2166	c.2152G>A	c.(2152-2154)GAC>AAC	p.D718N	CDH4_uc002ybp.1_Missense_Mutation_p.D644N	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	718	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			TGACAACGGGGACTGCACCAC	0.582													67	56					0	0	0.003610	0	0
HRH3	11255	broad.mit.edu	37	20	60791640	60791640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:60791640G>A	uc002ycf.2	-	3	1057	c.760C>T	c.(760-762)CCA>TCA	p.P254S	HRH3_uc002ycg.2_Missense_Mutation_p.P254S|HRH3_uc002ych.2_Missense_Mutation_p.P254S|HRH3_uc002yci.2_Missense_Mutation_p.P254S	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	254	Poly-Pro.|Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	CCAGGCGGTGGGGGTGGTGAG	0.736													11	12					0	0	0.000978	0	0
LAMA5	3911	broad.mit.edu	37	20	60886054	60886054	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:60886054G>A	uc002ycq.2	-	74	10252	c.10185C>T	c.(10183-10185)TTC>TTT	p.F3395F		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	3395	Laminin G-like 4.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATTGCTCAGGAAGAGCGCCA	0.697													6	45					0	0	0.001984	0	0
LAMA5	3911	broad.mit.edu	37	20	60903380	60903380	+	Silent	SNP	G	A	A	rs143580785	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:60903380G>A	uc002ycq.2	-	35	4636	c.4569C>T	c.(4567-4569)GTC>GTT	p.V1523V		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1523	Laminin EGF-like 13.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCTCACAGCCGACCAGGGGGT	0.662													5	30					0	0	0.000602	0	0
COL9A3	1299	broad.mit.edu	37	20	61461890	61461890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61461890G>A	uc002ydm.2	+	24	1240	c.1237G>A	c.(1237-1239)GAC>AAC	p.D413N		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	413	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CAGCATGGGAGACCCCGGCCT	0.697													12	17					0	0	0.004990	0	0
DIDO1	11083	broad.mit.edu	37	20	61510928	61510928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61510928C>T	uc002ydr.1	-	16	6644	c.6380G>A	c.(6379-6381)CGG>CAG	p.R2127Q	DIDO1_uc002yds.1_Missense_Mutation_p.R2127Q	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2127	Arg-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					gtcccagtcccgctctcggct	0.378													37	62					0	0	0.005524	0	0
DIDO1	11083	broad.mit.edu	37	20	61512276	61512276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61512276C>T	uc002ydr.1	-	16	5296	c.5032G>A	c.(5032-5034)GGT>AGT	p.G1678S	DIDO1_uc002yds.1_Missense_Mutation_p.G1678S	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1678					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCCCTCTCACCGTCGTGCTGC	0.672													16	15					0	0	0.003163	0	0
DIDO1	11083	broad.mit.edu	37	20	61513284	61513284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61513284G>A	uc002ydr.1	-	16	4288	c.4024C>T	c.(4024-4026)CTC>TTC	p.L1342F	DIDO1_uc002yds.1_Missense_Mutation_p.L1342F	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1342					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCCTGGGGGAGACCTGCGGTG	0.577													38	137					0	0	0.002852	0	0
COL20A1	57642	broad.mit.edu	37	20	61937319	61937319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61937319G>A	uc011aau.1	+	5	524	c.424G>A	c.(424-426)GGG>AGG	p.G142R	COL20A1_uc011aav.1_5'Flank	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	142					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CTCCCACACGGGGAGCCCAGA	0.642													6	57					0	0	0.001984	0	0
COL20A1	57642	broad.mit.edu	37	20	61938856	61938856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61938856C>T	uc011aau.1	+	6	611	c.511C>T	c.(511-513)CGC>TGC	p.R171C	COL20A1_uc011aav.1_5'UTR	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	171					cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CCCCCAGTTCCGCTGCCTGCC	0.682													18	17					0	0	0.007413	0	0
COL20A1	57642	broad.mit.edu	37	20	61941816	61941816	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:61941816C>T	uc011aau.1	+	11	1447	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	COL20A1_uc011aav.1_Silent_p.I270I	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	449	Fibronectin type-III 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					TGTTCCCCATCTATGAGGGCG	0.687													8	10					0	0	0.004482	0	0
KCNQ2	3785	broad.mit.edu	37	20	62073779	62073779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:62073779C>T	uc002yey.1	-	5	973	c.796G>A	c.(796-798)GAT>AAT	p.D266N	KCNQ2_uc002yez.1_Missense_Mutation_p.D266N|KCNQ2_uc002yfa.1_Missense_Mutation_p.D266N|KCNQ2_uc002yfb.1_Missense_Mutation_p.D266N|KCNQ2_uc011aax.1_Missense_Mutation_p.D266N|KCNQ2_uc002yfc.1_Missense_Mutation_p.D266N	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	266					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CAGAGTGCATCCGCGTAGGTG	0.577													53	212					0	0	0.003610	0	0
PRIC285	85441	broad.mit.edu	37	20	62197221	62197221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:62197221G>A	uc002yfm.2	-	9	3846	c.2954C>T	c.(2953-2955)GCC>GTC	p.A985V	PRIC285_uc002yfl.1_Missense_Mutation_p.A416V	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	985	Ala-rich.				cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			CTGCTCCTCGGCCAGGTCCCC	0.697													20	7					0	0	0.001523	0	0
ZGPAT	84619	broad.mit.edu	37	20	62364577	62364578	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:62364577_62364578CC>TT	uc002ygk.2	+	3	769_770	c.591_592CC>TT	c.(589-594)TCCCAT>TCTTAT	p.H198Y	ZGPAT_uc002ygi.2_Missense_Mutation_p.H198Y|ZGPAT_uc002ygj.2_Missense_Mutation_p.H198Y|ZGPAT_uc010gkk.1_Intron|ZGPAT_uc010gkl.1_Missense_Mutation_p.H198Y|ZGPAT_uc002ygm.2_Missense_Mutation_p.H198Y|ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_5'Flank	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	198	C3H1-type.				negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GCAGGTTCTCCCATGGGCAGGT	0.653													12	60					0	0	0.004672	0	0
ZNF512B	57473	broad.mit.edu	37	20	62598735	62598735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:62598735G>A	uc002yhl.1	-	3	317	c.263C>T	c.(262-264)CCT>CTT	p.P88L		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	88					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GGAGCTCACAGGAATGTCTCG	0.597													23	168					0	0	0.004656	0	0
MYT1	4661	broad.mit.edu	37	20	62853301	62853301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr20:62853301C>T	uc002yii.2	+	14	2661	c.2297C>T	c.(2296-2298)TCG>TTG	p.S766L	MYT1_uc002yih.2_Missense_Mutation_p.S468L|MYT1_uc002yij.2_Missense_Mutation_p.S425L	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	766					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CAGGAAGTGTCGGAAGAGAAT	0.502													23	37					0	0	0.002299	0	0
TPTE	7179	broad.mit.edu	37	21	10920107	10920107	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:10920107G>A	uc002yip.1	-	19	1515	c.1147C>T	c.(1147-1149)CAG>TAG	p.Q383*	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Nonsense_Mutation_p.Q365*|TPTE_uc002yir.1_Nonsense_Mutation_p.Q345*|TPTE_uc010gkv.1_Nonsense_Mutation_p.Q245*	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	383	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTACTCCCTGAAATTTTTCG	0.378													8	60					0	0	0.004482	0	0
TPTE	7179	broad.mit.edu	37	21	10934997	10934997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:10934997C>T	uc002yip.1	-	15	1164	c.796G>A	c.(796-798)GAA>AAA	p.E266K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E248K|TPTE_uc002yir.1_Missense_Mutation_p.E228K|TPTE_uc010gkv.1_Missense_Mutation_p.E128K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	266	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CGCACAACTTCCTAAAAAAGA	0.333													11	67					0	0	0.002450	0	0
TPTE	7179	broad.mit.edu	37	21	10951333	10951333	+	Missense_Mutation	SNP	G	A	A	rs148393004		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:10951333G>A	uc002yip.1	-	10	747	c.379C>T	c.(379-381)CGT>TGT	p.R127C	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R109C|TPTE_uc002yir.1_Missense_Mutation_p.R89C|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	127					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GAAATAGAACGATACTCCAAA	0.338													22	61					0	0	0.001523	0	0
TPTE	7179	broad.mit.edu	37	21	10951384	10951384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:10951384G>A	uc002yip.1	-	10	696	c.328C>T	c.(328-330)CTT>TTT	p.L110F	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.L92F|TPTE_uc002yir.1_Missense_Mutation_p.L72F|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	110	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGGTCGGCAAGGATGAGAGTG	0.318													27	68					0	0	0.002096	0	0
BTG3	10950	broad.mit.edu	37	21	18966434	18966434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:18966434G>A	uc002ykk.2	-	5	996	c.736C>T	c.(736-738)CCT>TCT	p.P246S	BTG3_uc002ykl.2_Missense_Mutation_p.P290S	NM_006806	NP_006797	Q14201	BTG3_HUMAN	B-cell translocation gene 3 isoform b	246					negative regulation of cell proliferation|negative regulation of mitotic cell cycle	cytoplasm					0				Epithelial(23;0.000283)|all cancers(11;0.0012)|Lung(58;0.0191)|OV - Ovarian serous cystadenocarcinoma(11;0.0206)|COAD - Colon adenocarcinoma(22;0.0315)|LUSC - Lung squamous cell carcinoma(23;0.0703)|Colorectal(24;0.0971)		AACATGTGAGGATTAATCCAG	0.378													11	24					0	0	0.000978	0	0
JAM2	58494	broad.mit.edu	37	21	27062200	27062200	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:27062200C>T	uc002ylp.1	+	3	701	c.156C>T	c.(154-156)ACC>ACT	p.T52T	JAM2_uc011ace.1_Silent_p.T52T|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Intron|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Silent_p.T52T|JAM2_uc010gli.1_Silent_p.T52T	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	52	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						CCTGCAAAACCCCAAAGAAGA	0.378													31	92					0	0	0.006230	0	0
RNF160	26046	broad.mit.edu	37	21	30365230	30365230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:30365230C>T	uc002ymr.2	-	1	48	c.35G>A	c.(34-36)GGA>GAA	p.G12E		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	Error:Variant_position_missing_in_O94822_after_alignment							ligase activity|zinc ion binding				0						GTAATAACTTCCCCCGGGCCC	0.642													4	3					0	0	0.000248	0	0
GRIK1	2897	broad.mit.edu	37	21	30934107	30934107	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:30934107G>A	uc002yno.1	-	15	2658	c.2194C>T	c.(2194-2196)CTG>TTG	p.L732L	GRIK1_uc002ynn.2_Silent_p.L717L|GRIK1_uc011acs.1_Silent_p.L732L|GRIK1_uc011act.1_Silent_p.L593L	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	732	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TTTCTTACCAGGGCGGTCTGC	0.512													10	19					0	0	0.000978	0	0
KRTAP26-1	388818	broad.mit.edu	37	21	31692180	31692180	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:31692180C>T	uc002ynw.2	-	1	428	c.174G>A	c.(172-174)GAG>GAA	p.E58E		NM_203405	NP_981950	Q6PEX3	KR261_HUMAN	keratin associated protein 26-1	58						intermediate filament				ovary(1)	1						CACCGCAGGTCTCTTGGCAGT	0.567													33	54					0	0	0.004878	0	0
KRTAP13-2	337959	broad.mit.edu	37	21	31744114	31744114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:31744114G>A	uc002ynz.3	-	1	444	c.418C>T	c.(418-420)CTC>TTC	p.L140F		NM_181621	NP_853652	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	140						intermediate filament					0						CCATAGCCGAGGGAAGGGAAG	0.572													11	21					0	0	0.001855	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852459	31852459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:31852459C>T	uc011acx.1	-	1	178	c.178G>A	c.(178-180)GGA>AGA	p.G60R		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	60	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						CCGTAGCCTCCAAAGCCAGAG	0.527													70	115					0	0	0.003610	0	0
KRTAP6-1	337966	broad.mit.edu	37	21	31986117	31986117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:31986117G>A	uc002yop.2	-	1	107	c.107C>T	c.(106-108)TCC>TTC	p.S36F	KRTAP20-1_uc011ade.1_5'Flank	NM_181602	NP_853633	Q3LI64	KRA61_HUMAN	keratin associated protein 6-1	36						cytosol|intermediate filament					0						GCCACAGCAGGAGCCATAGCC	0.612													32	46					0	0	0.004289	0	0
TIAM1	7074	broad.mit.edu	37	21	32639059	32639059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:32639059G>A	uc002yow.1	-	5	702	c.230C>T	c.(229-231)TCC>TTC	p.S77F	TIAM1_uc011adk.1_Missense_Mutation_p.S77F|TIAM1_uc011adl.1_Missense_Mutation_p.S77F|TIAM1_uc002yox.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	77					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						ACCATCTTGGGAGAAGGGCTC	0.592													15	22					0	0	0.002450	0	0
SYNJ1	8867	broad.mit.edu	37	21	34004071	34004071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:34004071G>A	uc002yqh.2	-	32	4073	c.4073C>T	c.(4072-4074)CCA>CTA	p.P1358L	SYNJ1_uc011ads.1_3'UTR|SYNJ1_uc002yqf.2_3'UTR|SYNJ1_uc002yqg.2_Missense_Mutation_p.P1272L|SYNJ1_uc002yqi.2_3'UTR|SYNJ1_uc002yqe.3_5'UTR	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1319	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						AATCTTTAATGGTGATTCTCT	0.393													9	14					0	0	0.006214	0	0
SYNJ1	8867	broad.mit.edu	37	21	34018742	34018742	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:34018742G>C	uc002yqh.2	-	24	3325	c.3325C>G	c.(3325-3327)CGA>GGA	p.R1109G	SYNJ1_uc011ads.1_Missense_Mutation_p.R1065G|SYNJ1_uc002yqf.2_Missense_Mutation_p.R1070G|SYNJ1_uc002yqg.2_Missense_Mutation_p.R1065G|SYNJ1_uc002yqi.2_Missense_Mutation_p.R1109G	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1070	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GACGGTGCTCGGCTTGGTCTG	0.527													32	62					0	0	0.003271	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467820	35467820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:35467820C>T	uc002yto.2	+	2	835	c.323C>T	c.(322-324)ACC>ATC	p.T108I	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	108	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						GGGGTATATACCATGCCTGAA	0.453													185	301					0	0	0.003610	0	0
KCNE1	3753	broad.mit.edu	37	21	35821771	35821771	+	Silent	SNP	G	A	A	rs17173508		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:35821771G>A	uc010gmp.2	-	2	592	c.162C>T	c.(160-162)TTC>TTT	p.F54F	KCNE1_uc002ytz.2_Silent_p.F54F|KCNE1_uc010gmq.2_Silent_p.F54F|KCNE1_uc010gmr.2_Silent_p.F54F|KCNE1_uc010gms.2_Silent_p.F54F|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	54	Helical; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	TGAAGAAGCCGAAGAATCCCA	0.607													107	187					0	0	0.003610	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602821	37602821	+	Missense_Mutation	SNP	C	T	T	rs146572771	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:37602821C>T	uc002yvg.2	+	14	1818	c.1739C>T	c.(1738-1740)TCG>TTG	p.S580L	DOPEY2_uc011aeb.1_Missense_Mutation_p.S580L	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	580					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GAAGATGCTTCGTTTCCCCCT	0.473													17	63					0	0	0.004990	0	0
MORC3	23515	broad.mit.edu	37	21	37744705	37744705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:37744705C>T	uc002yvi.2	+	16	2618	c.2542C>T	c.(2542-2544)CGT>TGT	p.R848C		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	848	Potential.				cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						GTCACAAATCCGTTCACAGTG	0.323													16	67					0	0	0.006122	0	0
TTC3	7267	broad.mit.edu	37	21	38529064	38529064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:38529064G>A	uc002yvz.2	+	28	2953	c.2848G>A	c.(2848-2850)GAC>AAC	p.D950N	TTC3_uc011aee.1_Missense_Mutation_p.D640N|TTC3_uc002ywa.2_Missense_Mutation_p.D950N|TTC3_uc002ywb.2_Missense_Mutation_p.D950N|TTC3_uc010gnf.2_Missense_Mutation_p.D715N|TTC3_uc002ywc.2_Missense_Mutation_p.D640N|TTC3_uc002ywd.1_Missense_Mutation_p.D14N	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	950					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TCACAAACTAGACTCTATAGA	0.388													9	61					0	0	0.004482	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086976	39086976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:39086976C>T	uc011aej.1	-	3	537	c.484G>A	c.(484-486)GAT>AAT	p.D162N	KCNJ6_uc002ywo.2_Missense_Mutation_p.D162N	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	162	Extracellular (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	GGGCATTTATCTGTGATGACC	0.428													16	61					0	0	0.001216	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087043	39087043	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:39087043G>A	uc011aej.1	-	3	470	c.417C>T	c.(415-417)TTC>TTT	p.F139F	KCNJ6_uc002ywo.2_Silent_p.F139F	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	139					synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	AAGCAGAGACGAACCCGTTGA	0.453													18	76					0	0	0.002299	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087068	39087068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:39087068G>A	uc011aej.1	-	3	445	c.392C>T	c.(391-393)CCT>CTT	p.P131L	KCNJ6_uc002ywo.2_Missense_Mutation_p.P131L	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	131	Extracellular (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	GGTAACACAAGGAGTCCAGGA	0.468													22	74					0	0	0.002299	0	0
DSCR10	259234	broad.mit.edu	37	21	39580310	39580310	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:39580310G>A	uc010gnt.1	+	3		c.432G>A				NR_027695				Homo sapiens DSCR10 mRNA, complete cds.												0						TGTGTGCCCTGATGTGGACCT	0.572													24	64					0	0	0.003330	0	0
PCP4	5121	broad.mit.edu	37	21	41300911	41300911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:41300911G>A	uc002yyp.2	+	3	145	c.64G>A	c.(64-66)GGA>AGA	p.G22R		NM_006198	NP_006189	P48539	PCP4_HUMAN	Purkinje cell protein 4	22					central nervous system development	cytosol|nucleus				large_intestine(1)	1		Prostate(19;2.65e-06)|all_epithelial(19;0.138)				TGCTACAGATGGACAGAAGAA	0.453													13	64					0	0	0.004007	0	0
DSCAM	1826	broad.mit.edu	37	21	41447141	41447141	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:41447141C>T	uc002yyq.1	-	27	5164	c.4712_splice	c.e27-1	p.S1571_splice	DSCAM_uc002yyr.1_Intron	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform						cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGAATTGTACCTGAAAGCAGG	0.498													10	38					0	0	0.000978	0	0
DSCAM	1826	broad.mit.edu	37	21	41711233	41711234	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:41711233_41711234CC>AT	uc002yyq.1	-	7	1771_1772	c.1319_1320GG>AT	c.(1318-1320)TGG>TAT	p.W440Y	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	440	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGTCCAGGGTCCACGTGATCGT	0.54													7	34					0	0	0.004672	0	0
DSCAM	1826	broad.mit.edu	37	21	41719712	41719712	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:41719712G>A	uc002yyq.1	-	6	1547	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	365	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTTCGTGGTTGATCCCTGTGA	0.512													190	95					0	0	0.003610	0	0
PRDM15	63977	broad.mit.edu	37	21	43240524	43240524	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:43240524G>A	uc002yzq.1	-	24	3276	c.3165C>T	c.(3163-3165)ATC>ATT	p.I1055I	PRDM15_uc002yzo.2_Silent_p.I726I|PRDM15_uc002yzp.2_Silent_p.I746I|PRDM15_uc002yzr.1_Silent_p.I746I	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1055					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCAGGGGTGGATGTACCTGA	0.607													7	17					0	0	0.003080	0	0
UMODL1	89766	broad.mit.edu	37	21	43531747	43531747	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:43531747G>A	uc002zaf.1	+	12	2031	c.2031G>A	c.(2029-2031)GAG>GAA	p.E677E	UMODL1_uc002zad.1_Silent_p.E605E|UMODL1_uc002zae.1_Silent_p.E733E|UMODL1_uc002zag.1_Silent_p.E805E	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	677	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGCGAAATGAGGACAGTGGAC	0.612													10	32					0	0	0.000978	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43809058	43809058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:43809058C>T	uc002zbb.2	-	4	503	c.302G>A	c.(301-303)GGG>GAG	p.G101E	TMPRSS3_uc002zaz.2_5'UTR|TMPRSS3_uc002zba.2_5'UTR|TMPRSS3_uc002zbc.2_Missense_Mutation_p.G101E|TMPRSS3_uc002zbd.2_Missense_Mutation_p.G101E	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	101	LDL-receptor class A.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CTCGTCCTCCCCGTCTTTGCA	0.537													6	46					0	0	0.003080	0	0
RRP1B	23076	broad.mit.edu	37	21	45107874	45107874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45107874C>T	uc002zdk.2	+	13	1733	c.1619C>T	c.(1618-1620)CCG>CTG	p.P540L	RRP1B_uc002zdl.2_Missense_Mutation_p.P73L	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	540					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		CTGTCCACGCCGGCCTGGCCT	0.647													9	39					0	0	0.006214	0	0
AGPAT3	56894	broad.mit.edu	37	21	45379681	45379681	+	Missense_Mutation	SNP	C	T	T	rs151002444		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45379681C>T	uc002zdv.2	+	3	341	c.119C>T	c.(118-120)CCG>CTG	p.P40L	AGPAT3_uc002zdw.2_Missense_Mutation_p.P40L|AGPAT3_uc002zdx.2_Missense_Mutation_p.P127L|AGPAT3_uc002zdy.2_5'UTR	NM_020132	NP_064517	Q9NRZ7	PLCC_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 3	40	Cytoplasmic (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0				STAD - Stomach adenocarcinoma(101;0.18)|Colorectal(79;0.24)		GCGCTCTGGCCGGTCAGCAAG	0.647													9	42					0	0	0.004482	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45518311	45518311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45518311C>T	uc002zea.2	+	21	3411	c.3242C>T	c.(3241-3243)TCC>TTC	p.S1081F	TRAPPC10_uc010gpo.2_Missense_Mutation_p.S792F|TRAPPC10_uc011afa.1_Missense_Mutation_p.S459F|TRAPPC10_uc011afb.1_Missense_Mutation_p.S186F	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1081					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCCCTCTGCTCCCTGGAGGTT	0.468													41	131					0	0	0.003610	0	0
PFKL	5211	broad.mit.edu	37	21	45736130	45736130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45736130C>T	uc002zel.2	+	8	810	c.751C>T	c.(751-753)CGG>TGG	p.R251W	PFKL_uc002zek.2_Missense_Mutation_p.R298W	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	251					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		GACCCAGACTCGGAGCCGTGG	0.642													18	60					0	0	0.007413	0	0
TRPM2	7226	broad.mit.edu	37	21	45784063	45784063	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45784063C>T	uc002zet.1	+	4	534	c.321C>T	c.(319-321)ACC>ACT	p.T107T	TRPM2_uc002zeu.1_Silent_p.T107T|TRPM2_uc002zew.1_Silent_p.T107T|TRPM2_uc010gpt.1_Silent_p.T107T	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	107	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCCCCACACCTTCCAGGGCA	0.527													16	39					0	0	0.006122	0	0
TRPM2	7226	broad.mit.edu	37	21	45798897	45798897	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45798897C>T	uc002zet.1	+	9	1245	c.1032C>T	c.(1030-1032)ACC>ACT	p.T344T	TRPM2_uc002zeu.1_Silent_p.T344T|TRPM2_uc002zew.1_Silent_p.T344T|TRPM2_uc010gpt.1_Silent_p.T344T|TRPM2_uc002zex.1_Silent_p.T130T	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	344	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ACAACGCCACCACCAACGGCA	0.632													25	39					0	0	0.005443	0	0
TRPM2	7226	broad.mit.edu	37	21	45811262	45811262	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45811262G>A	uc002zet.1	+	12	1761	c.1548G>A	c.(1546-1548)TGG>TGA	p.W516*	TRPM2_uc002zeu.1_Nonsense_Mutation_p.W516*|TRPM2_uc002zew.1_Nonsense_Mutation_p.W516*|TRPM2_uc010gpt.1_Nonsense_Mutation_p.W516*|TRPM2_uc002zex.1_Nonsense_Mutation_p.W302*|TRPM2_uc002zey.1_Nonsense_Mutation_p.W29*	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	516	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTGTCACCTGGGACACCTTGC	0.572													19	111					0	0	0.007413	0	0
TRPM2	7226	broad.mit.edu	37	21	45860727	45860727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45860727C>T	uc002zet.1	+	32	4538	c.4325C>T	c.(4324-4326)ACG>ATG	p.T1442M	TRPM2_uc002zeu.1_Missense_Mutation_p.T1442M|TRPM2_uc002zew.1_Missense_Mutation_p.T1442M|TRPM2_uc010gpt.1_Missense_Mutation_p.T1492M|TRPM2_uc002zex.1_Missense_Mutation_p.T1228M|TRPM2_uc002zey.1_Missense_Mutation_p.T921M|TRPM2_uc011aff.1_Missense_Mutation_p.T123M	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1442	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGGATCGAGACGGTGGCCGTC	0.617													42	52					0	0	0.003610	0	0
TRPM2	7226	broad.mit.edu	37	21	45861646	45861646	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45861646G>A	uc002zet.1	+	33	4671	c.4458G>A	c.(4456-4458)GCG>GCA	p.A1486A	TRPM2_uc002zeu.1_Silent_p.A1486A|TRPM2_uc002zew.1_Silent_p.A1486A|TRPM2_uc010gpt.1_Silent_p.A1536A|TRPM2_uc002zex.1_Silent_p.A1272A|TRPM2_uc002zey.1_Silent_p.A965A|TRPM2_uc011aff.1_Silent_p.A167A	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1486	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CACTCTATGCGAACCACAAGA	0.637													11	31					0	0	0.000673	0	0
C21orf29	54084	broad.mit.edu	37	21	45929240	45929240	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45929240G>A	uc002zfe.1	-	10	1662	c.1596C>T	c.(1594-1596)TTC>TTT	p.F532F	C21orf29_uc010gpv.1_Silent_p.F464F	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	532	EAR 5.				cell adhesion	extracellular region	structural molecule activity				0						CCCCGATCTGGAAGACCTCCC	0.438													7	23					0	0	0.004482	0	0
C21orf29	54084	broad.mit.edu	37	21	45947249	45947249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45947249C>T	uc002zfe.1	-	7	1141	c.1075G>A	c.(1075-1077)GAG>AAG	p.E359K	C21orf29_uc010gpv.1_Missense_Mutation_p.E291K	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	359	EAR 2.				cell adhesion	extracellular region	structural molecule activity				0						ACGAACTTCTCTTCGGTCCAC	0.552													17	101					0	0	0.001216	0	0
C21orf29	54084	broad.mit.edu	37	21	45950937	45950937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45950937C>T	uc002zfe.1	-	4	688	c.622G>A	c.(622-624)GGC>AGC	p.G208S	C21orf29_uc010gpv.1_Missense_Mutation_p.G140S	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	208	TSP N-terminal.				cell adhesion	extracellular region	structural molecule activity				0						ATGAACAGGCCTTTGGCTCTC	0.577													6	32					0	0	0.001984	0	0
C21orf29	54084	broad.mit.edu	37	21	45953616	45953616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45953616G>A	uc002zfe.1	-	3	560	c.494C>T	c.(493-495)TCC>TTC	p.S165F	C21orf29_uc010gpv.1_Missense_Mutation_p.S97F	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	165	TSP N-terminal.				cell adhesion	extracellular region	structural molecule activity				0						GACGCCTGCGGACACAGCCAG	0.692													6	25					0	0	0.001168	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45993706	45993706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45993706C>T	uc002zfk.1	+	1	101	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	24						keratin filament					0						GACTCTTGCTCCGACTCCTGG	0.682													23	92					0	0	0.005443	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45994708	45994708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:45994708C>T	uc002zfk.1	+	1	1103	c.1073C>T	c.(1072-1074)TCC>TTC	p.S358F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	358	36 X 5 AA repeats of C-C-X(3).|34.					keratin filament					0						TGCAGACCCTCCTCCTCCGTG	0.662													21	142					0	0	0.002299	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46058033	46058033	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:46058033C>T	uc002zfq.2	+	1	761	c.699C>T	c.(697-699)CCC>CCT	p.P233P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	233						keratin filament					0						TCTGCCGCCCCGTGTGCTCCC	0.692													54	24					0	0	0.003610	0	0
COL18A1	80781	broad.mit.edu	37	21	46888697	46888697	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:46888697C>T	uc011afs.1	+	2	1914	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	COL18A1_uc002zhg.2_Silent_p.F216F|COL18A1_uc002zhi.2_Silent_p.F396F	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	631	TSP N-terminal.				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTGACAAGTTCCAGGTAACCC	0.697													5	5					0	0	0.001168	0	0
COL6A2	1292	broad.mit.edu	37	21	47545416	47545416	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47545416C>T	uc002zia.1	+	25	1936	c.1854C>T	c.(1852-1854)TTC>TTT	p.F618F	COL6A2_uc002zhy.1_Silent_p.F618F|COL6A2_uc002zhz.1_Silent_p.F618F|COL6A2_uc002zib.1_Silent_p.F24F|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	618	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		ACGTGGTCTTCGTCATCGACA	0.607													11	48					0	0	0.002450	0	0
MCM3AP	8888	broad.mit.edu	37	21	47662798	47662798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47662798C>T	uc002zir.1	-	25	5380	c.5344G>A	c.(5344-5346)GAT>AAT	p.D1782N	MCM3APAS_uc002zim.2_Intron|MCM3APAS_uc002zin.2_Intron|MCM3AP_uc002zio.1_Missense_Mutation_p.D277N|MCM3AP_uc002zip.1_Missense_Mutation_p.D523N|MCM3AP_uc002ziq.1_Missense_Mutation_p.D709N|MCM3APAS_uc002zis.1_Intron	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1782					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TTTTTCAAATCGTTTTTAAAA	0.443													12	73					0	0	0.001368	0	0
MCM3AP	8888	broad.mit.edu	37	21	47697595	47697595	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47697595G>A	uc002zir.1	-	5	1740	c.1704C>T	c.(1702-1704)CAC>CAT	p.H568H		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	568					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					CCTCGAATTGGTGGGCCTTTA	0.547													17	71					0	0	0.001216	0	0
PCNT	5116	broad.mit.edu	37	21	47754535	47754535	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47754535C>T	uc002zji.3	+	3	599	c.492C>T	c.(490-492)CAC>CAT	p.H164H	PCNT_uc002zjj.2_Silent_p.H46H|PCNT_uc010gqk.1_RNA	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	164					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TCAGTGACCACCCACCAGAAC	0.552													10	53					0	0	0.006214	0	0
PCNT	5116	broad.mit.edu	37	21	47801634	47801634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47801634C>T	uc002zji.3	+	16	3298	c.3191C>T	c.(3190-3192)ACT>ATT	p.T1064I	PCNT_uc002zjj.2_Missense_Mutation_p.T946I	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1064	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GAAAAGAAAACTGCTTTGCAT	0.403													36	174					0	0	0.007835	0	0
PCNT	5116	broad.mit.edu	37	21	47831942	47831942	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr21:47831942C>T	uc002zji.3	+	28	6062	c.5955C>T	c.(5953-5955)TCC>TCT	p.S1985S	PCNT_uc002zjj.2_Silent_p.S1867S	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1985					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGGAGGCCTCCCATGATGCTG	0.642													8	39					0	0	0.000673	0	0
GAB4	128954	broad.mit.edu	37	22	17445721	17445721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:17445721G>A	uc002zlw.2	-	8	1519	c.1411C>T	c.(1411-1413)CCC>TCC	p.P471S		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	471										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				GTGGAGATGGGGTGTTGGGAG	0.572													14	52					0	0	0.004007	0	0
MICAL3	57553	broad.mit.edu	37	22	18301606	18301606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:18301606G>A	uc002zng.3	-	26	4174	c.3821C>T	c.(3820-3822)TCC>TTC	p.S1274F	MICAL3_uc011agl.1_Missense_Mutation_p.S1190F	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1274	Pro-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CTGGGTAGGGGATGGGACAGT	0.682													18	34					0	0	0.006122	0	0
MICAL3	57553	broad.mit.edu	37	22	18389393	18389393	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:18389393G>A	uc002zng.3	-	2	539	c.186C>T	c.(184-186)GCC>GCT	p.A62A	MICAL3_uc011agl.1_Silent_p.A62A|MICAL3_uc002znh.2_Silent_p.A62A|MICAL3_uc002znk.1_Silent_p.A62A|MICAL3_uc002znl.1_5'UTR|MICAL3_uc010grf.2_Silent_p.A62A|MICAL3_uc011agm.1_Silent_p.A62A	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	62						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		AGAGGGCTTTGGCTTTCCAGT	0.493													180	18					0	0	0.003610	0	0
CLTCL1	8218	broad.mit.edu	37	22	19230400	19230400	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:19230400G>A	uc002zpb.2	-	4	654	c.579C>T	c.(577-579)CCC>CCT	p.P193P	CLTCL1_uc011agv.1_Silent_p.P193P|CLTCL1_uc011agw.1_Silent_p.P193P	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	193	Globular terminal domain.			P -> H (in Ref. 1; AAC50494).	anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					GGCCTTCTATGGGTTGTGAAA	0.478			T	?	ALCL								19	42					0	0	0.006122	0	0
HIRA	7290	broad.mit.edu	37	22	19348765	19348765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:19348765G>A	uc002zpf.1	-	17	2300	c.2080C>T	c.(2080-2082)CTC>TTC	p.L694F	HIRA_uc011agx.1_Missense_Mutation_p.L560F|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Missense_Mutation_p.L650F|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	694	Interaction with CCNA1.|Interaction with PAX3 (By similarity).|Interaction with histone H2B.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					CTTACCTGGAGGGTGAATGCT	0.547													47	5					0	0	0.003610	0	0
PI4KA	5297	broad.mit.edu	37	22	21081523	21081523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:21081523G>A	uc002zsz.3	-	41	4993	c.4762C>T	c.(4762-4764)CCT>TCT	p.P1588S	PI4KA_uc002zsy.3_Missense_Mutation_p.P398S	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1588					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CTCACCGGAGGGAAGGACCGC	0.662													35	16					0	0	0.007835	0	0
HIC2	23119	broad.mit.edu	37	22	21800874	21800874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:21800874G>A	uc002zur.3	+	3	1920	c.1690G>A	c.(1690-1692)GAT>AAT	p.D564N	HIC2_uc002zus.3_Missense_Mutation_p.D564N	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	564	C2H2-type 4.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				CTTCGCCTGCGATGAGTGTGG	0.632													45	6					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	22677072	22677072	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:22677072G>A	uc011aim.1	+	36		c.3112G>A			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGCGGCCCCAGGACAGAAGGT	0.567													108	21					0	0	0.003610	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869154	22869154	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:22869154G>A	uc002zwe.2	-	2	1054	c.801C>T	c.(799-801)CCC>CCT	p.P267P	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TTTCTTTCTTGGGATCAAAGG	0.433													17	100					0	0	0.006122	0	0
RAB36	9609	broad.mit.edu	37	22	23503099	23503099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:23503099C>T	uc002zwv.1	+	10	891	c.851C>T	c.(850-852)GCC>GTC	p.A284V	RAB36_uc010gtw.1_Missense_Mutation_p.A262V	NM_004914	NP_004905	O95755	RAB36_HUMAN	RAB36, member RAS oncogene family	284					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.155)		AGCCGCGTAGCCGCCCTGGCA	0.597													58	24					0	0	0.003610	0	0
ZNF70	7621	broad.mit.edu	37	22	24086047	24086047	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:24086047G>A	uc002zxs.2	-	2	1742	c.1281C>T	c.(1279-1281)TCC>TCT	p.S427S	ZNF70_uc002zxr.1_5'Flank	NM_021916	NP_068735	Q9UC06	ZNF70_HUMAN	zinc finger protein 70	427	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TCCCCCGGAAGGACTTGCCGC	0.547													152	16					0	0	0.003610	0	0
MYO18B	84700	broad.mit.edu	37	22	26270264	26270264	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:26270264G>A	uc003abz.1	+	23	4213	c.3963G>A	c.(3961-3963)AAG>AAA	p.K1321K	MYO18B_uc003aca.1_Silent_p.K1202K|MYO18B_uc010guy.1_Silent_p.K1203K|MYO18B_uc010guz.1_Silent_p.K1202K|MYO18B_uc011aka.1_Silent_p.K475K|MYO18B_uc011akb.1_Silent_p.K834K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1321	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TTTTTCTCAAGGCAGGTGTGA	0.547													107	15					0	0	0.003610	0	0
MYO18B	84700	broad.mit.edu	37	22	26423113	26423113	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:26423113G>A	uc003abz.1	+	43	7423	c.7173G>A	c.(7171-7173)GTG>GTA	p.V2391V	MYO18B_uc003aca.1_Silent_p.V2272V|MYO18B_uc010guy.1_Silent_p.V2273V|MYO18B_uc010guz.1_Silent_p.V2271V|MYO18B_uc011aka.1_Silent_p.V1545V|MYO18B_uc011akb.1_Silent_p.V1904V|MYO18B_uc010gva.1_Silent_p.V374V|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2391						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGTCCTCTGTGGACGATGCGG	0.597													67	28					0	0	0.003610	0	0
MYO18B	84700	broad.mit.edu	37	22	26423526	26423526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:26423526G>A	uc003abz.1	+	43	7836	c.7586G>A	c.(7585-7587)GGA>GAA	p.G2529E	MYO18B_uc003aca.1_Missense_Mutation_p.G2410E|MYO18B_uc010guy.1_Missense_Mutation_p.G2411E|MYO18B_uc010guz.1_Missense_Mutation_p.G2409E|MYO18B_uc011aka.1_Missense_Mutation_p.G1683E|MYO18B_uc011akb.1_Missense_Mutation_p.G2042E|MYO18B_uc010gva.1_Missense_Mutation_p.G512E|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2529						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGTCGACCAGGAATCCCACGA	0.602													37	4					0	0	0.003214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706777	26706777	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:26706777C>T	uc003acb.2	+	7	1812	c.1656C>T	c.(1654-1656)GCC>GCT	p.A552A	SEZ6L_uc003acc.2_Silent_p.A552A|SEZ6L_uc011akc.1_Silent_p.A552A|SEZ6L_uc003acd.2_Silent_p.A552A|SEZ6L_uc011akd.1_Silent_p.A552A|SEZ6L_uc003ace.2_Silent_p.A552A|SEZ6L_uc003acf.1_Silent_p.A325A|SEZ6L_uc010gvc.1_Silent_p.A325A	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	552	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CCCGGGCGGCCTCCACCTTCA	0.602													95	14					0	0	0.003610	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707874	26707874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:26707874G>A	uc003acb.2	+	8	1978	c.1822G>A	c.(1822-1824)GAA>AAA	p.E608K	SEZ6L_uc003acc.2_Missense_Mutation_p.E608K|SEZ6L_uc011akc.1_Missense_Mutation_p.E608K|SEZ6L_uc003acd.2_Missense_Mutation_p.E608K|SEZ6L_uc011akd.1_Missense_Mutation_p.E608K|SEZ6L_uc003ace.2_Missense_Mutation_p.E608K|SEZ6L_uc003acf.1_Missense_Mutation_p.E381K|SEZ6L_uc010gvc.1_Missense_Mutation_p.E381K	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	608	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGCCATCATCGAATGCATCAA	0.592													162	20					0	0	0.003610	0	0
RFPL1	5988	broad.mit.edu	37	22	29835098	29835098	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:29835098G>A	uc003afn.2	+	1	527	c.318G>A	c.(316-318)CTG>CTA	p.L106L	RFPL1S_uc003afm.1_RNA	NM_021026	NP_066306	O75677	RFPL1_HUMAN	ret finger protein-like 1	106							zinc ion binding				0						TCAAGGAACTGGAGCCCAAGC	0.527													38	128					0	0	0.006999	0	0
CCDC157	550631	broad.mit.edu	37	22	30766437	30766437	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:30766437C>T	uc011aku.1	+	5	1203	c.543C>T	c.(541-543)CCC>CCT	p.P181P	CCDC157_uc011akv.1_Silent_p.P181P	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	181										central_nervous_system(1)	1						TAGGCTTGCCCCAGACCTGCC	0.597													130	13					0	0	0.003610	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887849	30887849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:30887849C>T	uc003aid.2	-	10	983	c.883G>A	c.(883-885)GAG>AAG	p.E295K	SEC14L4_uc011akz.1_Missense_Mutation_p.E295K|SEC14L4_uc003aie.2_Missense_Mutation_p.E280K|SEC14L4_uc003aif.2_Missense_Mutation_p.E241K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	295	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AACAGGATCTCGTTCTCCACC	0.652													17	1					0	0	0.007413	0	0
SEC14L4	284904	broad.mit.edu	37	22	30891336	30891336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:30891336C>T	uc003aid.2	-	5	428	c.328G>A	c.(328-330)GGT>AGT	p.G110S	SEC14L4_uc011akz.1_Missense_Mutation_p.G110S|SEC14L4_uc003aie.2_Missense_Mutation_p.G95S|SEC14L4_uc003aif.2_Missense_Mutation_p.G56S	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	110	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	AGCAGGAGACCCTTGGGGTCG	0.542													51	5					0	0	0.003610	0	0
MORC2	22880	broad.mit.edu	37	22	31328894	31328894	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:31328894G>C	uc003aje.1	-	23	3682	c.2318C>G	c.(2317-2319)ACG>AGG	p.T773R		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	835							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						TCTTGGTGTCGTGTCTGTGGG	0.622													156	70					0	0	0.003610	0	0
MORC2	22880	broad.mit.edu	37	22	31338233	31338233	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:31338233T>A	uc003aje.1	-	8	1630	c.266A>T	c.(265-267)AAT>ATT	p.N89I		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	151							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						GGTCCGAGCATTCCAGGTGGG	0.502													162	26					0	0	0.003610	0	0
SYN3	8224	broad.mit.edu	37	22	32914109	32914110	+	Silent	DNP	GG	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:32914109_32914110GG>TT	uc003amx.2	-	12	1689_1690	c.1530_1531CC>AA	c.(1528-1533)CCCCGG>CCAAGG	p.510_511PR>PR	SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Silent_p.509_510PR>PR|SYN3_uc011amc.1_Silent_p.144_145PR>PR	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	510_511	J; Pro-rich linker.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						ACAGGGGGCCGGGGCTGTGAGG	0.629													5	92					0	0	0.004672	0	0
LARGE	9215	broad.mit.edu	37	22	33700406	33700406	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:33700406G>A	uc003and.3	-	13	2118	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	LARGE_uc011amd.1_Silent_p.F312F|LARGE_uc003ane.3_Silent_p.F513F|LARGE_uc010gwp.2_Silent_p.F461F|LARGE_uc011ame.1_Silent_p.F445F|LARGE_uc011amf.1_Silent_p.F513F	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	513	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				CGTAGCGGAGGAACTGCTGGG	0.627													9	37					0	0	0.004482	0	0
ISX	91464	broad.mit.edu	37	22	35480387	35480387	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:35480387G>A	uc003anj.2	+	3	1344	c.393G>A	c.(391-393)CAG>CAA	p.Q131Q	ISX_uc011amg.1_Silent_p.Q119Q	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	131	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						TCTGGTTCCAGAATCAGCGAG	0.483													16	50					0	0	0.004990	0	0
CSF2RB	1439	broad.mit.edu	37	22	37334086	37334086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:37334086C>T	uc003aqa.3	+	14	2453	c.2236C>T	c.(2236-2238)CCT>TCT	p.P746S	CSF2RB_uc003aqc.3_Missense_Mutation_p.P752S	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	746	Cytoplasmic (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CAGCTTATGTCCTGGGCTGGC	0.637													22	97					0	0	0.001882	0	0
LGALS2	3957	broad.mit.edu	37	22	37966292	37966292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:37966292G>A	uc003ata.2	-	4	489	c.377C>T	c.(376-378)TCC>TTC	p.S126F		NM_006498	NP_006489	P05162	LEG2_HUMAN	lectin, galactoside-binding, soluble, 2	126	Galectin.									breast(1)|skin(1)	2	Melanoma(58;0.0574)					CTTGAAAGAGGACATGTTGAA	0.517													90	6					0	0	0.003610	0	0
PDGFB	5155	broad.mit.edu	37	22	39621782	39621782	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:39621782C>T	uc003axf.2	-	6	1661	c.672G>A	c.(670-672)CGG>CGA	p.R224R	PDGFB_uc003axe.2_Silent_p.R209R	NM_002608	NP_002599	P01127	PDGFB_HUMAN	platelet-derived growth factor beta isoform 1	224					activation of protein kinase B activity|cellular response to mycophenolic acid|embryonic placenta development|heart development|hemopoiesis|metanephric glomerular mesangial cell development|monocyte chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|negative regulation of transcription, DNA-dependent|paracrine signaling|peptidyl-serine phosphorylation|peptidyl-tyrosine phosphorylation|platelet activation|platelet degranulation|positive regulation of blood vessel endothelial cell migration|positive regulation of calcium ion import|positive regulation of cell division|positive regulation of chemotaxis|positive regulation of cyclin-dependent protein kinase activity|positive regulation of DNA biosynthetic process|positive regulation of DNA replication|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of glomerular filtration|positive regulation of glomerular mesangial cell proliferation|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent|reactive oxygen species metabolic process|transforming growth factor beta receptor signaling pathway	basolateral plasma membrane|cell surface|endoplasmic reticulum lumen|extracellular region|Golgi membrane|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|superoxide-generating NADPH oxidase activator activity		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(1)	373	Melanoma(58;0.04)				Becaplermin(DB00102)	GCTTGAATTTCCGGTGCTTGC	0.622			T	COL1A1	DFSP								11	27					0	0	0.000978	0	0
TAB1	10454	broad.mit.edu	37	22	39817844	39817844	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:39817844C>T	uc003axt.2	+	8	838	c.789C>T	c.(787-789)TCC>TCT	p.S263S	TAB1_uc003axr.2_Silent_p.S339S|TAB1_uc011aok.1_Silent_p.S97S|TAB1_uc003axu.1_Silent_p.S263S	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	263	PP2C-like.				activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CTGCCAAGTCCAAACCAATCA	0.577													15	76					0	0	0.003163	0	0
CACNA1I	8911	broad.mit.edu	37	22	40057191	40057191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40057191C>T	uc003ayc.2	+	16	2777	c.2777C>T	c.(2776-2778)CCT>CTT	p.P926L	CACNA1I_uc003ayd.2_Missense_Mutation_p.P891L|CACNA1I_uc003aye.2_Missense_Mutation_p.P841L|CACNA1I_uc003ayf.2_Missense_Mutation_p.P806L	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	926	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CACCTAGGTCCTGCTGGGGCT	0.652													27	13					0	0	0.006320	0	0
CACNA1I	8911	broad.mit.edu	37	22	40066866	40066866	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40066866C>T	uc003ayc.2	+	26	4446	c.4446C>T	c.(4444-4446)TCC>TCT	p.S1482S	CACNA1I_uc003ayd.2_Silent_p.S1447S|CACNA1I_uc003aye.2_Silent_p.S1397S|CACNA1I_uc003ayf.2_Silent_p.S1362S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1482	Cytoplasmic (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCATCCACTCCATGTGCACCA	0.587													32	134					0	0	0.004878	0	0
FAM83F	113828	broad.mit.edu	37	22	40417373	40417373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40417373G>A	uc003ayk.1	+	4	953	c.859G>A	c.(859-861)GAG>AAG	p.E287K		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	287										breast(1)	1						CTTTGACACGGAGTTCCGGGA	0.602													149	14					0	0	0.003610	0	0
FAM83F	113828	broad.mit.edu	37	22	40417616	40417616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40417616G>A	uc003ayk.1	+	4	1196	c.1102G>A	c.(1102-1104)GCC>ACC	p.A368T		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	368										breast(1)	1						TGGCGAGTCGGCCTGGCGCCT	0.711													32	4					0	0	0.003755	0	0
TNRC6B	23112	broad.mit.edu	37	22	40662767	40662767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40662767C>T	uc011aor.1	+	5	2744	c.2533C>T	c.(2533-2535)CCA>TCA	p.P845S	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Missense_Mutation_p.P845S|TNRC6B_uc003ayo.2_Missense_Mutation_p.P649S	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	845	Pro-rich.				gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						AGGCCCACCCCCACCACCTCC	0.612													8	46					0	0	0.003080	0	0
TNRC6B	23112	broad.mit.edu	37	22	40711447	40711447	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:40711447C>T	uc011aor.1	+	20	5050	c.4839C>T	c.(4837-4839)CCC>CCT	p.P1613P	TNRC6B_uc003aym.2_Silent_p.P809P|TNRC6B_uc003ayn.3_Silent_p.P1503P|TNRC6B_uc003ayo.2_Silent_p.P1360P	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1613					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CATCATCTCCCTGGAGCAGCA	0.572													71	29					0	0	0.003610	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41320445	41320445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:41320445C>T	uc003azh.2	+	9	1408	c.1316C>T	c.(1315-1317)TCC>TTC	p.S439F	XPNPEP3_uc003azi.2_Missense_Mutation_p.S360F|XPNPEP3_uc011aoy.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	439					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						ATGCCCCGTTCCCTCCCTCTG	0.433													22	84					0	0	0.003954	0	0
EP300	2033	broad.mit.edu	37	22	41564798	41564798	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:41564798G>T	uc003azl.3	+	25	4494	c.4099G>T	c.(4099-4101)GAT>TAT	p.D1367Y		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1367					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TGAAGAAATTGATGGTGTTGA	0.493			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				34	120					2.20474e-14	3.2084e-14	0.003755	1	0
ZC3H7B	23264	broad.mit.edu	37	22	41735047	41735047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:41735047C>T	uc003azw.2	+	9	884	c.668C>T	c.(667-669)TCC>TTC	p.S223F	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	239					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CTTCTCCCCTCCACGCCCACG	0.667													126	107					0	0	0.003610	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42536660	42536661	+	Missense_Mutation	DNP	GG	AA	AA	rs143457816	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:42536660_42536661GG>AA	uc003bci.2	-	8	1331_1332	c.950_951CC>TT	c.(949-951)GCC>GTT	p.A317V	CYP2D7P1_uc003bcg.2_Missense_Mutation_p.A61V|CYP2D7P1_uc003bch.2_Missense_Mutation_p.A61V|CYP2D7P1_uc010gyv.2_Missense_Mutation_p.A101V|CYP2D7P1_uc010gyw.2_RNA	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						TCTTCCAGACGGCCTCATCCTT	0.604													6	9					0	0	0.004672	0	0
SCUBE1	80274	broad.mit.edu	37	22	43616481	43616481	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:43616481G>A	uc003bdt.1	-	14	1750	c.1662C>T	c.(1660-1662)ATC>ATT	p.I554I		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	554					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TCTTTGTCTCGATCTCAAACT	0.607													23	110					0	0	0.005443	0	0
PRR5	55615	broad.mit.edu	37	22	45133024	45133024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:45133024C>T	uc003bfb.1	+	8	1336	c.1064C>T	c.(1063-1065)TCC>TTC	p.S355F	PRR5_uc003bew.1_Missense_Mutation_p.S346F|PRR5_uc003bex.1_Missense_Mutation_p.S260F|PRR5_uc010gzt.1_Missense_Mutation_p.S378F|PRR5_uc010gzu.1_Missense_Mutation_p.S319F|PRR5_uc003bey.1_Missense_Mutation_p.S346F|PRR5_uc003bez.1_Missense_Mutation_p.S260F|PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc003bfd.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|PRR5_uc003bfa.1_Missense_Mutation_p.S248F|PRR5_uc003bfe.1_RNA|PRR5-ARHGAP8_uc003bfg.1_Intron|PRR5_uc003bfh.1_Missense_Mutation_p.S254F	NM_181333	NP_851850	P85299	PRR5_HUMAN	proline rich 5 (renal) isoform 1	355					cell cycle					skin(1)	1		all_neural(38;0.00409)|Ovarian(80;0.024)|Glioma(61;0.0647)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)		ATCCTGGAGTCCGTGGACTCG	0.662													18	94					0	0	0.006122	0	0
PHF21B	112885	broad.mit.edu	37	22	45312464	45312465	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:45312464_45312465CC>TT	uc003bfn.2	-	4	410_411	c.259_260GG>AA	c.(259-261)GGC>AAC	p.G87N	PHF21B_uc003bfm.2_5'UTR|PHF21B_uc011aqk.1_Missense_Mutation_p.G75N|PHF21B_uc011aql.1_Missense_Mutation_p.G87N|PHF21B_uc011aqm.1_Missense_Mutation_p.G75N	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	87							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CCGGTCCCGGCCCGGGGCAACG	0.634													60	25					0	0	0.004672	0	0
RIBC2	26150	broad.mit.edu	37	22	45813682	45813682	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:45813682A>C	uc011aqs.1	+	4	606	c.397A>C	c.(397-399)AAT>CAT	p.N133H		NM_015653	NP_056468	Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	65											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TGATGTTCGGAATACGATATC	0.448													3	70					0	0	0.004672	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653108	46653108	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:46653108T>G	uc003bhh.2	-	1	6112	c.6112A>C	c.(6112-6114)ATT>CTT	p.I2038L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	2038	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		TGAAAGGGAATGAAGTCTTCT	0.383													20	77					0	0	0.001882	0	0
GTSE1	51512	broad.mit.edu	37	22	46708096	46708096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:46708096C>T	uc011aqy.1	+	5	1033	c.821C>T	c.(820-822)TCC>TTC	p.S274F	GTSE1_uc011aqz.1_Missense_Mutation_p.S121F	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	255					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		GAGAAGGAATCCCACCGGGAT	0.537													47	42					0	0	0.003610	0	0
CELSR1	9620	broad.mit.edu	37	22	46932281	46932282	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:46932281_46932282GG>AA	uc003bhw.1	-	1	786_787	c.786_787CC>TT	c.(784-789)ACCCTC>ACTTTC	p.L263F		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	263	Extracellular (Potential).|Cadherin 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		TGGAGGATGAGGGTGCCCGCCG	0.554													56	21					0	0	0.004672	0	0
GRAMD4	23151	broad.mit.edu	37	22	47022827	47022827	+	Missense_Mutation	SNP	C	T	T	rs140068081		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:47022827C>T	uc003bhx.2	+	1	170	c.131C>T	c.(130-132)TCG>TTG	p.S44L		NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	44					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		CCGCGGACCTCGCCCCGGGAC	0.642													20	90					0	0	0.002299	0	0
BRD1	23774	broad.mit.edu	37	22	50171394	50171394	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:50171394G>A	uc003biv.2	-	8	3019	c.2532C>T	c.(2530-2532)GCC>GCT	p.A844A	BRD1_uc011arf.1_Silent_p.A570A|BRD1_uc011arg.1_Silent_p.A893A|BRD1_uc011arh.1_Silent_p.A844A|BRD1_uc003biu.3_Silent_p.A975A	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	844					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GTCGGGGTGTGGCCTTCCTCC	0.711													4	23					0	0	0.000248	0	0
CPT1B	1375	broad.mit.edu	37	22	51011367	51011367	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:51011367G>T	uc003bmk.3	-	10	1451	c.1289C>A	c.(1288-1290)CCC>CAC	p.P430H	CPT1B_uc003bml.2_Missense_Mutation_p.P430H|CPT1B_uc003bmm.2_Missense_Mutation_p.P430H|CPT1B_uc003bmo.2_Missense_Mutation_p.P430H|CPT1B_uc011asa.1_Missense_Mutation_p.P396H|CPT1B_uc003bmn.2_Missense_Mutation_p.P430H|CPT1B_uc011asb.1_Intron|CHKB-CPT1B_uc003bmp.2_Missense_Mutation_p.P227H	NM_001145137	NP_001138609	Q92523	CPT1B_HUMAN	carnitine palmitoyltransferase 1B isoform a	430	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation|regulation of fatty acid oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		all cancers(3;3.56e-77)|OV - Ovarian serous cystadenocarcinoma(4;5.39e-74)|Epithelial(4;5.58e-70)|GBM - Glioblastoma multiforme(4;5.59e-08)|LUAD - Lung adenocarcinoma(64;0.0016)|Lung(4;0.00942)|BRCA - Breast invasive adenocarcinoma(115;0.207)		CTCATCTTCGGGGTCATAGGA	0.562													31	184					1.22384e-17	1.78367e-17	0.002836	1	0
ARSA	410	broad.mit.edu	37	22	51063675	51063675	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:51063675G>A	uc003bnb.3	-	9	1675	c.1422C>T	c.(1420-1422)CCC>CCT	p.P474P	ARSA_uc003bna.3_Silent_p.P390P|ARSA_uc003bnc.3_Silent_p.P474P|ARSA_uc003bnd.3_Silent_p.P474P|ARSA_uc003bmz.3_Silent_p.P474P	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	474						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	CCACCTGGCTGGGGCCGAAGG	0.682													33	18					0	0	0.002445	0	0
ARSA	410	broad.mit.edu	37	22	51065039	51065039	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr22:51065039G>A	uc003bnb.3	-	5	1081	c.828C>T	c.(826-828)GTC>GTT	p.V276V	ARSA_uc003bna.3_Silent_p.V192V|ARSA_uc003bnc.3_Silent_p.V276V|ARSA_uc003bnd.3_Silent_p.V276V|ARSA_uc003bmz.3_Silent_p.V276V|ARSA_uc010hbf.2_3'UTR	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	276						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	CAGTGAAGATGACCAGCGTCT	0.642													42	18					0	0	0.006999	0	0
CNTN6	27255	broad.mit.edu	37	3	1367635	1367635	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:1367635G>A	uc003boz.2	+	9	1350	c.1083G>A	c.(1081-1083)GAG>GAA	p.E361E	CNTN6_uc011asj.1_Silent_p.E289E|CNTN6_uc003bpa.2_Silent_p.E361E	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	361	Ig-like C2-type 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TCAACCCAGAGGTAAGCAACT	0.328													9	23					0	0	0.000978	0	0
CNTN4	152330	broad.mit.edu	37	3	2928832	2928832	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:2928832G>A	uc003bpc.2	+	9	1085	c.864G>A	c.(862-864)GAG>GAA	p.E288E	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Silent_p.E288E	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	288	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TTCAGCAGGAGGATGCTGGTT	0.398													7	23					0	0	0.001984	0	0
IL5RA	3568	broad.mit.edu	37	3	3139581	3139581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:3139581C>T	uc011ask.1	-	8	1326	c.682G>A	c.(682-684)GAT>AAT	p.D228N	IL5RA_uc010hbq.2_Missense_Mutation_p.D228N|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.D228N|IL5RA_uc011asl.1_Missense_Mutation_p.D228N|IL5RA_uc011asm.1_Missense_Mutation_p.D228N|IL5RA_uc010hbt.2_Missense_Mutation_p.D228N|IL5RA_uc011asn.1_Missense_Mutation_p.D228N|IL5RA_uc010hbu.2_Missense_Mutation_p.D228N	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	228	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		AACAGCTGATCAAAGGGCCTG	0.413													10	33					0	0	0.000673	0	0
GRM7	2917	broad.mit.edu	37	3	7620192	7620192	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:7620192G>A	uc003bqm.2	+	8	1873	c.1599G>A	c.(1597-1599)AAG>AAA	p.K533K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.K533K|GRM7_uc003bql.2_Silent_p.K533K|GRM7_uc003bqn.1_Silent_p.K116K|GRM7_uc010hch.1_Silent_p.K44K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	533	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GACAGAGAAAGAAGACACAGA	0.483													23	47					0	0	0.002780	0	0
SRGAP3	9901	broad.mit.edu	37	3	9055474	9055474	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:9055474G>A	uc003brf.1	-	16	2542	c.1866C>T	c.(1864-1866)ACC>ACT	p.T622T	SRGAP3_uc003brg.1_Silent_p.T598T	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	622	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CGCGGGGAAGGGTGACGAGGA	0.552			T	RAF1	pilocytic astrocytoma								37	35					0	0	0.001951	0	0
SRGAP3	9901	broad.mit.edu	37	3	9106152	9106152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:9106152C>T	uc003brf.1	-	5	1276	c.600G>A	c.(598-600)ATG>ATA	p.M200I	SRGAP3_uc003brg.1_Missense_Mutation_p.M200I|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Missense_Mutation_p.M200I|SRGAP3_uc003brj.1_Missense_Mutation_p.M60I	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	200					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GGAGCAGGTTCATGCTGAGGT	0.577			T	RAF1	pilocytic astrocytoma								29	66					0	0	0.002096	0	0
IL17RC	84818	broad.mit.edu	37	3	9959648	9959649	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:9959648_9959649CC>TT	uc003bua.2	+	3	618_619	c.382_383CC>TT	c.(382-384)CCG>TTG	p.P128L	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_RNA|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Missense_Mutation_p.P57L|IL17RC_uc003btz.2_Missense_Mutation_p.P57L|IL17RC_uc011atp.1_5'UTR|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.P57L|IL17RC_uc010hct.2_Missense_Mutation_p.P57L|IL17RC_uc010hcu.2_Missense_Mutation_p.P57L|IL17RC_uc010hcv.2_Missense_Mutation_p.P57L|IL17RC_uc011atq.1_Missense_Mutation_p.P57L|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	128	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						CGTGCCTGCTCCGGGCCCCGTG	0.624													20	11					0	0	0.004672	0	0
SLC6A11	6538	broad.mit.edu	37	3	10953849	10953849	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:10953849T>A	uc003bvz.2	+	7	1000	c.966T>A	c.(964-966)AGT>AGA	p.S322R		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	322	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CTCTGGGAAGTTATAACAATT	0.512													26	83					0	0	0.007291	0	0
Unknown	0	broad.mit.edu	37	3	12299845	12299845	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:12299845C>T	uc003bwp.1	-	1		c.108G>A				NR_003112				NR_003112																		TCAGGAGAGTCCCCCATTGTG	0.502													23	59					0	0	0.002299	0	0
FBLN2	2199	broad.mit.edu	37	3	13612990	13612990	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:13612990G>T	uc011avb.1	+	2	1260	c.1135G>T	c.(1135-1137)GAC>TAC	p.D379Y	FBLN2_uc011auz.1_Missense_Mutation_p.D405Y|FBLN2_uc011ava.1_Missense_Mutation_p.D379Y|FBLN2_uc011avc.1_Missense_Mutation_p.D379Y	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	379	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CTCTCCCAGGGACCCAGTCAA	0.662													6	15					5.18039e-06	7.4952e-06	0.003080	1	0
XPC	7508	broad.mit.edu	37	3	14214555	14214555	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:14214555A>G	uc011ave.1	-	2	215	c.111T>C	c.(109-111)TTT>TTC	p.F37F	XPC_uc011avf.1_5'UTR|XPC_uc011avg.1_Silent_p.F37F	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	37	Glu-rich (acidic).				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						TCTCATCTTCAAAGGCATCTA	0.507			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				3	2					0	0	0.004672	0	0
MRPS25	64432	broad.mit.edu	37	3	15093987	15093987	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:15093987C>T	uc003bzl.2	-	4	598	c.483G>A	c.(481-483)GGG>GGA	p.G161G	MRPS25_uc011avl.1_3'UTR|MRPS25_uc011avm.1_Intron	NM_022497	NP_071942	P82663	RT25_HUMAN	mitochondrial ribosomal protein S25	161					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						CTTTGTACTTCCCCCTCATCT	0.602													34	115					0	0	0.002836	0	0
ZFYVE20	64145	broad.mit.edu	37	3	15124054	15124055	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:15124054_15124055GG>AA	uc003bzm.1	-	9	1273_1274	c.659_660CC>TT	c.(658-660)CCC>CTT	p.P220L	ZFYVE20_uc010hek.1_Missense_Mutation_p.P220L|ZFYVE20_uc011avn.1_Intron	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	220	FYVE-type.|Ser-rich.|Necessary for the correct targeting to endosomes.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						GGACACTGTTGGGTGACTGGCT	0.604													26	17					0	0	0.004672	0	0
ANKRD28	23243	broad.mit.edu	37	3	15720984	15720984	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:15720984C>A	uc003caj.1	-	22	2529	c.2386G>T	c.(2386-2388)GTG>TTG	p.V796L	ANKRD28_uc003cai.1_Missense_Mutation_p.V642L|ANKRD28_uc011avz.1_Missense_Mutation_p.V642L|ANKRD28_uc003cak.1_RNA|ANKRD28_uc011awa.1_Intron	NM_015199	NP_056014	O15084	ANR28_HUMAN	ankyrin repeat domain 28	796	ANK 23.					nucleoplasm	protein binding			breast(1)	1						TTTACTTACACGGCACAATGC	0.378													18	36					5.03518e-11	7.31445e-11	0.007413	1	0
GALNTL2	117248	broad.mit.edu	37	3	16237312	16237312	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:16237312C>T	uc003car.3	+	2	1060	c.585C>T	c.(583-585)GTC>GTT	p.V195V	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	195	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CAGCCAGCGTCATCCTCTGTT	0.592													14	38					0	0	0.004990	0	0
GALNTL2	117248	broad.mit.edu	37	3	16254145	16254145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:16254145G>A	uc003car.3	+	6	1742	c.1267G>A	c.(1267-1269)GAT>AAT	p.D423N	GALNTL2_uc003caq.3_Missense_Mutation_p.D156N	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	423	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CCAAAATCAGGATTCCCATTC	0.537													16	40					0	0	0.007413	0	0
GALNTL2	117248	broad.mit.edu	37	3	16261495	16261495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:16261495C>T	uc003car.3	+	8	2078	c.1603C>T	c.(1603-1605)CCT>TCT	p.P535S	GALNTL2_uc003caq.3_Missense_Mutation_p.P268S|GALNTL2_uc003cas.3_Missense_Mutation_p.P65S	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	535	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GGTGTTGGCTCCTTGCAGTGA	0.547													78	64					0	0	0.003610	0	0
PLCL2	23228	broad.mit.edu	37	3	17056316	17056316	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:17056316C>T	uc011awc.1	+	6	3012	c.2907C>T	c.(2905-2907)GTC>GTT	p.V969V	PLCL2_uc011awd.1_Silent_p.V851V	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	977					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						CCCTAGTGGTCCTAAATCTCA	0.537													47	105					0	0	0.003610	0	0
EFHB	151651	broad.mit.edu	37	3	19959780	19959780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:19959780C>T	uc003cbl.3	-	4	1317	c.1121G>A	c.(1120-1122)GGA>GAA	p.G374E	EFHB_uc003cbm.2_Missense_Mutation_p.G244E	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	374					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TTTTGGTAATCCTGGTGCTTG	0.373													213	202					0	0	0.003610	0	0
RPL15	6138	broad.mit.edu	37	3	23960057	23960057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:23960057C>T	uc003ccn.2	+	3	335	c.299C>T	c.(298-300)TCC>TTC	p.S100F	NKIRAS1_uc003cck.2_Intron|NKIRAS1_uc003ccj.2_5'Flank|NKIRAS1_uc003ccl.2_5'Flank|NKIRAS1_uc003ccm.2_5'Flank|RPL15_uc011awi.1_Missense_Mutation_p.S100F|RPL15_uc011awj.1_Intron|RPL15_uc003cco.2_Missense_Mutation_p.S100F|RPL15_uc003ccp.2_Missense_Mutation_p.S100F|RPL15_uc003ccq.2_Missense_Mutation_p.S100F|RPL15_uc003ccr.2_Missense_Mutation_p.S100F	NM_002948	NP_002939	P61313	RL15_HUMAN	ribosomal protein L15	100					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome			ovary(1)	1						AGCCTTCAGTCCGTTGCAGAG	0.483													51	49					0	0	0.003610	0	0
NGLY1	55768	broad.mit.edu	37	3	25781208	25781209	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:25781208_25781209GT>AA	uc003cdl.2	-	5	848_849	c.740_741AC>TT	c.(739-741)AAC>ATT	p.N247I	NGLY1_uc010hfg.2_Missense_Mutation_p.N247I|NGLY1_uc003cdm.2_Missense_Mutation_p.N247I|NGLY1_uc011awo.1_Missense_Mutation_p.N205I|NGLY1_uc003cdk.2_Intron	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	247					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						TGCACAAAACGTTATTCACCCA	0.416													46	54					0	0	0.004672	0	0
NEK10	152110	broad.mit.edu	37	3	27393991	27393991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:27393991G>A	uc003cdt.1	-	4	371	c.97C>T	c.(97-99)CGG>TGG	p.R33W		NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	33							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						AAAAGGCACCGAAGTCTTTTA	0.413													33	25					0	0	0.002836	0	0
SLC4A7	9497	broad.mit.edu	37	3	27436188	27436188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:27436188G>A	uc003cdv.2	-	20	2982	c.2911C>T	c.(2911-2913)CCA>TCA	p.P971S	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Missense_Mutation_p.P852S|SLC4A7_uc011aww.1_Missense_Mutation_p.P980S|SLC4A7_uc011awx.1_Missense_Mutation_p.P967S|SLC4A7_uc011awy.1_Missense_Mutation_p.P963S|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Missense_Mutation_p.P852S|SLC4A7_uc011axb.1_Missense_Mutation_p.P967S|SLC4A7_uc010hfl.2_Missense_Mutation_p.P521S|SLC4A7_uc003cdw.2_Missense_Mutation_p.P847S	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	971	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						ACAAACCATGGAAGTCCCATG	0.423													15	39					0	0	0.004007	0	0
TGFBR2	7048	broad.mit.edu	37	3	30732960	30732960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:30732960C>T	uc003ceo.2	+	7	1955	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S	TGFBR2_uc003cen.2_Missense_Mutation_p.P550S	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	525	Protein kinase.|Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						GGACCACGACCCAGAGGCCCG	0.607													13	36					0	0	0.002450	0	0
OSBPL10	114884	broad.mit.edu	37	3	31712380	31712380	+	Missense_Mutation	SNP	C	T	T	rs145049164	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:31712380C>T	uc003cev.2	-	10	2203	c.1822G>A	c.(1822-1824)GGA>AGA	p.G608R	OSBPL10_uc003ceu.1_Missense_Mutation_p.G365R|OSBPL10_uc011axf.1_Missense_Mutation_p.G544R	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	608					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		ACTTTTCCTCCGAGCTCCACC	0.557													21	80					0	0	0.001882	0	0
TRIM71	131405	broad.mit.edu	37	3	32932742	32932742	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:32932742C>T	uc003cff.2	+	4	2109	c.2046C>T	c.(2044-2046)TTC>TTT	p.F682F		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	682	NHL 2.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						TCTTCACGTTCGAGGGCCAGT	0.577													28	23					0	0	0.006320	0	0
DCLK3	85443	broad.mit.edu	37	3	36759552	36759553	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:36759552_36759553GG>AA	uc003cgi.2	-	4	2192_2193	c.1701_1702CC>TT	c.(1699-1704)ATCCAG>ATTTAG	p.Q568*		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	568	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TGGCCCAGCTGGATGATGTTAA	0.55													62	65					0	0	0.004672	0	0
TRANK1	9881	broad.mit.edu	37	3	36873271	36873271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:36873271C>T	uc003cgj.2	-	12	6323	c.6021G>A	c.(6019-6021)ATG>ATA	p.M2007I		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2557					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CAGGGCAGTCCATGCTCATGA	0.577													17	47					0	0	0.007413	0	0
TRANK1	9881	broad.mit.edu	37	3	36873994	36873994	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:36873994C>T	uc003cgj.2	-	12	5600	c.5298G>A	c.(5296-5298)AGG>AGA	p.R1766R		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2316	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTTTGAGTTCCCTGTTGTAGT	0.512													39	48					0	0	0.001951	0	0
TRANK1	9881	broad.mit.edu	37	3	36875372	36875372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:36875372G>A	uc003cgj.2	-	12	4222	c.3920C>T	c.(3919-3921)TCC>TTC	p.S1307F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1857					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGAGAGCTTGGAAATGGGAAG	0.413													19	48					0	0	0.007413	0	0
GOLGA4	2803	broad.mit.edu	37	3	37369101	37369101	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:37369101C>T	uc003cgv.2	+	14	6028	c.5724C>T	c.(5722-5724)TCC>TCT	p.S1908S	GOLGA4_uc010hgr.1_Silent_p.S1469S|GOLGA4_uc003cgw.2_Silent_p.S1930S|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Silent_p.S1789S	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1908	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AAGAAAAGTCCAAATCACATT	0.393													47	36					0	0	0.003610	0	0
ITGA9	3680	broad.mit.edu	37	3	37555332	37555332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:37555332C>T	uc003chd.2	+	9	1029	c.976C>T	c.(976-978)CCC>TCC	p.P326S	ITGA9_uc003chc.2_Missense_Mutation_p.P326S	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	326	Extracellular (Potential).|FG-GAP 5.				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		GGTGGGGGCCCCCATGTTTTC	0.547													17	59					0	0	0.004990	0	0
VILL	50853	broad.mit.edu	37	3	38048127	38048127	+	Missense_Mutation	SNP	G	T	T	rs147292695		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38048127G>T	uc003chj.2	+	19	2679	c.2393G>T	c.(2392-2394)CGG>CTG	p.R798L	VILL_uc003chl.2_Missense_Mutation_p.R798L	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	798	HP.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GGCCTGCGCCGGGAACAACTG	0.657													5	49					0.000602214	0.00086696	0.000602	1	0
ACAA1	30	broad.mit.edu	37	3	38169315	38169316	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38169315_38169316CC>TT	uc003cht.2	-	7	794_795	c.587_588GG>AA	c.(586-588)CGG>CAA	p.R196Q	ACAA1_uc003chu.2_Missense_Mutation_p.R163Q|ACAA1_uc010hgy.2_Missense_Mutation_p.R155Q|ACAA1_uc010hgz.2_Missense_Mutation_p.R196Q|ACAA1_uc003chv.2_Missense_Mutation_p.R44Q	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	196					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		CCTGCTTCTCCCGTGAAATGCC	0.5													14	52					0	0	0.004672	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348823	38348823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38348823C>T	uc010hhc.1	+	3	637	c.595C>T	c.(595-597)CTC>TTC	p.L199F	SLC22A14_uc003cia.2_Missense_Mutation_p.L199F|SLC22A14_uc003cib.2_Missense_Mutation_p.L199F|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	199	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		GATAGGCTCTCTCATCTTCAG	0.537													30	25					0	0	0.003271	0	0
SLC22A14	9389	broad.mit.edu	37	3	38350536	38350536	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38350536C>T	uc010hhc.1	+	5	909	c.867C>T	c.(865-867)ATC>ATT	p.I289I	SLC22A14_uc003cib.2_Silent_p.I289I|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	289	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		TGACAGGGATCGCCTACAGTC	0.567													27	73					0	0	0.004878	0	0
SCN5A	6331	broad.mit.edu	37	3	38607912	38607912	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38607912G>A	uc003cio.2	-	21	4022	c.3828C>T	c.(3826-3828)TTC>TTT	p.F1276F	SCN5A_uc003cin.2_Silent_p.F1275F|SCN5A_uc003cil.3_Silent_p.F1276F|SCN5A_uc010hhi.2_Silent_p.F1276F|SCN5A_uc010hhk.2_Silent_p.F1275F|SCN5A_uc011ayr.1_Silent_p.F1222F|SCN5A_uc010hhj.1_Silent_p.F886F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1276	Helical; Name=S3 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTACGATGAGGAAGTCGAGCC	0.577													17	44					0	0	0.001216	0	0
SCN5A	6331	broad.mit.edu	37	3	38620875	38620875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38620875C>T	uc003cio.2	-	18	3534	c.3340G>A	c.(3340-3342)GAC>AAC	p.D1114N	SCN5A_uc003cin.2_Missense_Mutation_p.D1113N|SCN5A_uc003cil.3_Missense_Mutation_p.D1114N|SCN5A_uc010hhi.2_Missense_Mutation_p.D1114N|SCN5A_uc010hhk.2_Missense_Mutation_p.D1113N|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Missense_Mutation_p.D724N	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1114			D -> N (in LQT3).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGCCGCCAGTCGGCCTGAGAT	0.677													8	5					0	0	0.003080	0	0
SCN5A	6331	broad.mit.edu	37	3	38620979	38620979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38620979G>A	uc003cio.2	-	18	3430	c.3236C>T	c.(3235-3237)TCC>TTC	p.S1079F	SCN5A_uc003cin.2_Missense_Mutation_p.S1078F|SCN5A_uc003cil.3_Missense_Mutation_p.S1079F|SCN5A_uc010hhi.2_Missense_Mutation_p.S1079F|SCN5A_uc010hhk.2_Missense_Mutation_p.S1078F|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Missense_Mutation_p.S689F	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1079					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CACAGGCTGGGATTCCTGCTG	0.647													12	17					0	0	0.003163	0	0
SCN5A	6331	broad.mit.edu	37	3	38674777	38674777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38674777G>A	uc003cio.2	-	2	216	c.22C>T	c.(22-24)CGG>TGG	p.R8W	SCN5A_uc003cin.2_Missense_Mutation_p.R8W|SCN5A_uc003cil.3_Missense_Mutation_p.R8W|SCN5A_uc010hhi.2_Missense_Mutation_p.R8W|SCN5A_uc010hhk.2_Missense_Mutation_p.R8W|SCN5A_uc011ayr.1_Missense_Mutation_p.R8W	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	8					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTGGTGCCCCGAGGTAATAGG	0.592													12	24					0	0	0.004007	0	0
SCN10A	6336	broad.mit.edu	37	3	38770042	38770042	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38770042C>T	uc003ciq.2	-	15	2631	c.2631G>A	c.(2629-2631)GGG>GGA	p.G877G		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	877	II.|Helical; Name=S6 of repeat II; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCACCAGGTTCCCTAGCACCA	0.498													25	14					0	0	0.006320	0	0
SCN11A	11280	broad.mit.edu	37	3	38968311	38968311	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:38968311G>A	uc011ays.1	-	4	799	c.600C>T	c.(598-600)TCC>TCT	p.S200S		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	200	Helical; Name=S3 of repeat I; (By similarity).|I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAATGACAATGGAGTCCAGCC	0.398													27	121					0	0	0.006320	0	0
XIRP1	165904	broad.mit.edu	37	3	39227323	39227323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:39227323C>T	uc003cjk.1	-	2	3835	c.3614G>A	c.(3613-3615)GGG>GAG	p.G1205E	XIRP1_uc003cji.2_Intron|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1205							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCCTGGTGGCCCCCAGGCCAT	0.687													7	14					0	0	0.001984	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307214	39307214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:39307214G>A	uc003cjl.2	-	2	879	c.787C>T	c.(787-789)CCC>TCC	p.P263S		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	263	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TCACAACTGGGAAAGAAGTCA	0.463													66	43					0	0	0.003610	0	0
TRAK1	22906	broad.mit.edu	37	3	42242542	42242542	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:42242542C>T	uc003cky.2	+	12	1639	c.1423C>T	c.(1423-1425)CTG>TTG	p.L475L	TRAK1_uc011azh.1_Silent_p.L475L|TRAK1_uc011azi.1_Silent_p.L475L|TRAK1_uc003ckz.3_Silent_p.L401L|TRAK1_uc011azj.1_Silent_p.L401L|TRAK1_uc003cla.2_Silent_p.L417L	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	475	Interaction with HGS.				endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						GGCAGCCGACCTGGGGTGAGC	0.532													11	40					0	0	0.000978	0	0
TRAK1	22906	broad.mit.edu	37	3	42264742	42264742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:42264742C>T	uc003cky.2	+	16	2591	c.2375C>T	c.(2374-2376)TCC>TTC	p.S792F	TRAK1_uc011azi.1_Missense_Mutation_p.S771F	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	792					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						ACACCCACATCCTCCCCACCC	0.607													18	13					0	0	0.007413	0	0
ANO10	55129	broad.mit.edu	37	3	43618494	43618494	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:43618494G>A	uc003cmv.2	-	6	1023	c.852C>T	c.(850-852)CCC>CCT	p.P284P	ANO10_uc011azs.1_Silent_p.P284P|ANO10_uc003cmw.2_Silent_p.P218P|ANO10_uc010hil.2_Intron|ANO10_uc011azt.1_Silent_p.P173P	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	284	Cytoplasmic (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						ATCCTGGCCGGGGCTCCTCAA	0.532													20	38					0	0	0.001882	0	0
C3orf23	285343	broad.mit.edu	37	3	44408953	44408953	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:44408953C>T	uc010him.2	+	5	570	c.325C>T	c.(325-327)CGA>TGA	p.R109*	C3orf23_uc003cnd.3_Nonsense_Mutation_p.R109*|C3orf23_uc003cne.3_Intron	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	109						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		TCTAGGATTTCGAGCAGTCAA	0.303													21	39					0	0	0.003330	0	0
ZNF445	353274	broad.mit.edu	37	3	44488420	44488420	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:44488420G>A	uc003cnf.2	-	8	3091	c.2743C>T	c.(2743-2745)CAG>TAG	p.Q915*	ZNF445_uc011azv.1_Nonsense_Mutation_p.Q903*|ZNF445_uc011azw.1_Nonsense_Mutation_p.Q915*	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	915	C2H2-type 12.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		TGTTTCCTCTGGTGACTGGAA	0.493													42	30					0	0	0.003214	0	0
ZNF502	91392	broad.mit.edu	37	3	44763775	44763775	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:44763775A>T	uc011baa.1	+	4	1721	c.1466A>T	c.(1465-1467)AAG>ATG	p.K489M	ZNF502_uc003cns.2_Missense_Mutation_p.K489M|ZNF502_uc011bab.1_Missense_Mutation_p.K489M|ZNF502_uc003cnt.2_Missense_Mutation_p.K489M	NM_001134440	NP_001127912	Q8TBZ5	ZN502_HUMAN	zinc finger protein 502	489					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00855)|KIRC - Kidney renal clear cell carcinoma(197;0.0471)|Kidney(197;0.0589)		ACTGGTGAGAAGCTCTATAAA	0.398													9	21					0	0	0.006214	0	0
CDCP1	64866	broad.mit.edu	37	3	45134801	45134801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:45134801C>T	uc003com.2	-	6	1730	c.1595G>A	c.(1594-1596)GGT>GAT	p.G532D		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	532	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CACCGTCAGACCCTGCCTGGA	0.502													24	44					0	0	0.006320	0	0
CDCP1	64866	broad.mit.edu	37	3	45152315	45152315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:45152315G>A	uc003com.2	-	4	809	c.674C>T	c.(673-675)TCT>TTT	p.S225F	CDCP1_uc003con.2_Missense_Mutation_p.S225F	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	225	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CTCAAACACAGACTCGATGAT	0.552													103	93					0	0	0.003610	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812825	45812825	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:45812825C>T	uc011bai.1	-	6	943	c.819G>A	c.(817-819)CAG>CAA	p.Q273Q	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Silent_p.Q236Q	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	273	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TGGCGTGCTTCTGGCAGTTGT	0.527													19	57					0	0	0.007413	0	0
ALS2CL	259173	broad.mit.edu	37	3	46729610	46729610	+	Missense_Mutation	SNP	G	A	A	rs144978241		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:46729610G>A	uc003cqa.1	-	3	470	c.280C>T	c.(280-282)CGT>TGT	p.R94C	ALS2CL_uc003cqb.1_Missense_Mutation_p.R94C|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	94					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity	p.R94C(1)		breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TGCAGTACACGGTCAGCACCT	0.617													25	23					0	0	0.007291	0	0
PRSS50	29122	broad.mit.edu	37	3	46758961	46758961	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:46758961G>A	uc003cqe.1	-	2	332	c.273C>T	c.(271-273)TTC>TTT	p.F91F	PRSS50_uc003cqf.1_Silent_p.F5F	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	91					proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						CAGAAACTGGGAATTGGGTCT	0.607													15	40					0	0	0.001523	0	0
MYL3	4634	broad.mit.edu	37	3	46904814	46904814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:46904814G>A	uc003cql.1	-	1	160	c.67C>T	c.(67-69)CCC>TCC	p.P23S		NM_000258	NP_000249	P08590	MYL3_HUMAN	slow skeletal ventricular myosin alkali light	23					cardiac muscle contraction|muscle filament sliding|positive regulation of ATPase activity|regulation of striated muscle contraction|regulation of the force of heart contraction|ventricular cardiac muscle tissue morphogenesis	A band|cytosol|I band|muscle myosin complex	actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle				0				BRCA - Breast invasive adenocarcinoma(193;0.00116)|KIRC - Kidney renal clear cell carcinoma(197;0.00557)|Kidney(197;0.0063)		GGAGGTGCGGGAGCTGGAGCT	0.597													21	58					0	0	0.001882	0	0
KIF9	64147	broad.mit.edu	37	3	47305837	47305837	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:47305837C>A	uc010hjp.2	-	10	1524	c.920G>T	c.(919-921)GGA>GTA	p.G307V	KIF9_uc003cqx.2_Missense_Mutation_p.G307V|KIF9_uc003cqy.2_Missense_Mutation_p.G307V|KIF9_uc011bat.1_RNA|KIF9_uc011bau.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	307					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		ATTGCAGTTTCCCCCTGCGGA	0.443													22	63					3.01185e-09	4.36752e-09	0.003954	1	0
PLXNB1	5364	broad.mit.edu	37	3	48451759	48451759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:48451759G>A	uc003csw.2	-	31	5821	c.5551C>T	c.(5551-5553)CCC>TCC	p.P1851S	PLXNB1_uc003cst.2_Missense_Mutation_p.P301S|PLXNB1_uc003csu.2_Missense_Mutation_p.P1668S|PLXNB1_uc003csx.2_Missense_Mutation_p.P1851S	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1851	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GTGAGGCAGGGGACGAGGGCC	0.637													5	18					0	0	0.004482	0	0
COL7A1	1294	broad.mit.edu	37	3	48604154	48604154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:48604154G>A	uc003ctz.2	-	111	8244	c.8243C>T	c.(8242-8244)CCC>CTC	p.P2748L	UCN2_uc003cty.1_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2748	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTCTCTCCGGGGGGACCTCG	0.642													30	71					0	0	0.007291	0	0
COL7A1	1294	broad.mit.edu	37	3	48627128	48627128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:48627128C>T	uc003ctz.2	-	16	2075	c.2074G>A	c.(2074-2076)GTC>ATC	p.V692I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	692	Nonhelical region (NC1).|Fibronectin type-III 6.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTCACATGGACCGTCCTCACT	0.602													37	25					0	0	0.002222	0	0
CELSR3	1951	broad.mit.edu	37	3	48696450	48696450	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:48696450G>A	uc003cul.2	-	1	3899	c.3618C>T	c.(3616-3618)CTC>CTT	p.L1206L	CELSR3_uc003cuf.1_Silent_p.L1276L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1206	Extracellular (Potential).|Cadherin 9.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		AGGAGTAGAAGAGGTGGTCGG	0.547													8	26					0	0	0.004482	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48719196	48719196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:48719196G>A	uc003cun.2	-	5	710	c.616C>T	c.(616-618)CCC>TCC	p.P206S	NCKIPSD_uc003cum.2_Missense_Mutation_p.P199S|NCKIPSD_uc010hkh.1_Missense_Mutation_p.P206S	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	206	Ser/Thr-rich.|Pro-rich.				cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCCCCGGAGGGCATGGTGTTG	0.622													6	2					0	0	0.001984	0	0
QRICH1	54870	broad.mit.edu	37	3	49114439	49114439	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:49114439G>A	uc010hkq.2	-	3	308	c.12C>T	c.(10-12)TCC>TCT	p.S4S	QRICH1_uc003cvu.2_Silent_p.S4S|QRICH1_uc003cvv.2_Silent_p.S4S	NM_198880	NP_942581	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	4	CARD.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		TGTTCTCTAGGGAATTATTCA	0.428													21	87					0	0	0.001882	0	0
LAMB2	3913	broad.mit.edu	37	3	49168257	49168257	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:49168257C>A	uc003cwe.2	-	8	1251	c.952G>T	c.(952-954)GGC>TGC	p.G318C	LAMB2_uc003cwf.1_Missense_Mutation_p.G318C	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	318	Laminin EGF-like 1.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CAGTTGAGGCCACGTGTGTTG	0.582													37	95					2.6416e-12	3.8393e-12	0.006230	1	0
CCDC71	64925	broad.mit.edu	37	3	49200241	49200241	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:49200241G>A	uc003cwg.3	-	2	1539	c.1401C>T	c.(1399-1401)GTC>GTT	p.V467V		NM_022903	NP_075054	Q8IV32	CCD71_HUMAN	coiled-coil domain containing 71	467										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GAAGGAATCAGACTGCTGAAT	0.562													4	10					0	0	0.000602	0	0
TCTA	6988	broad.mit.edu	37	3	49449976	49449976	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:49449976C>T	uc003cwv.3	+	1	338	c.117C>T	c.(115-117)TTC>TTT	p.F39F	RHOA_uc010hku.2_5'Flank|RHOA_uc003cwu.2_5'Flank	NM_022171	NP_071503	P57738	TCTA_HUMAN	T-cell leukemia translocation altered	39	Cytoplasmic (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		TGACCCTCTTCAAGCTGCTGC	0.647													57	68					0	0	0.003610	0	0
BSN	8927	broad.mit.edu	37	3	49694051	49694051	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:49694051C>T	uc003cxe.3	+	5	7176	c.7062C>T	c.(7060-7062)TTC>TTT	p.F2354F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2354	Potential.				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GGCCAGGGTTCGAGAAAGAGG	0.652													6	4					0	0	0.003080	0	0
SEMA3B	7869	broad.mit.edu	37	3	50312345	50312345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:50312345G>A	uc003cyu.2	+	14	1671	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	SEMA3B_uc003cyt.2_Missense_Mutation_p.E476K|SEMA3B_uc003cyv.2_Missense_Mutation_p.E364K|SEMA3B_uc003cyw.2_Missense_Mutation_p.E200K|SEMA3B_uc010hli.2_Missense_Mutation_p.E369K|SEMA3B_uc003cyx.2_Missense_Mutation_p.E363K|SEMA3B_uc003cyy.2_Missense_Mutation_p.E134K|SEMA3B_uc011bdo.1_Missense_Mutation_p.E134K	NM_004636	NP_004627	Q13214	SEM3B_HUMAN	semaphorin 3B isoform 1 precursor	477	Sema.				axon guidance|cell-cell signaling	endoplasmic reticulum|extracellular region|membrane	receptor activity			lung(2)|central_nervous_system(2)|kidney(1)|skin(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		GCTGCTCCTGGAGGAGCTGCA	0.662											OREG0015583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	15					0	0	0.003163	0	0
NAT6	24142	broad.mit.edu	37	3	50334761	50334761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:50334761G>A	uc003czi.2	-	2	237	c.134C>T	c.(133-135)CCT>CTT	p.P45L	HYAL3_uc003czc.1_Intron|HYAL3_uc003czd.1_Intron|HYAL3_uc003cze.1_Intron|HYAL3_uc003czf.1_Intron|HYAL3_uc003czg.1_Intron|NAT6_uc003czj.2_Missense_Mutation_p.P67L|NAT6_uc003czk.3_Missense_Mutation_p.P45L|NAT6_uc003czl.1_Missense_Mutation_p.P45L	NM_012191	NP_036323	Q93015	NAT6_HUMAN	N-acetyltransferase 6	45						cytoplasm	N-acetyltransferase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		CTGGTGTTCAGGATCCAGGGT	0.602													9	50					0	0	0.000673	0	0
ZMYND10	51364	broad.mit.edu	37	3	50383008	50383008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:50383008C>T	uc003dag.1	-	1	149	c.3G>A	c.(1-3)ATG>ATA	p.M1I	ZMYND10_uc010hll.1_Missense_Mutation_p.M1I|ZMYND10_uc003dah.1_5'UTR|ZMYND10_uc010hlm.1_5'UTR	NM_015896	NP_056980	O75800	ZMY10_HUMAN	zinc finger, MYND domain-containing 10	1						cytoplasm	protein binding|zinc ion binding			lung(4)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		CCAGGTCTCCCATATCGAGGC	0.682										TSP Lung(30;0.18)			5	12					0	0	0.000602	0	0
DOCK3	1795	broad.mit.edu	37	3	51297629	51297629	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:51297629C>T	uc011bds.1	+	23	2250	c.2227C>T	c.(2227-2229)CTG>TTG	p.L743L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	743						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GTCACGGATCCTGTACTCACG	0.468													25	12					0	0	0.003954	0	0
DOCK3	1795	broad.mit.edu	37	3	51297686	51297686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:51297686G>A	uc011bds.1	+	23	2307	c.2284G>A	c.(2284-2286)GAA>AAA	p.E762K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	762						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGTATCCAAGAACTTTTCCA	0.478													10	23					0	0	0.001368	0	0
ABHD14B	84836	broad.mit.edu	37	3	52003559	52003559	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52003559C>T	uc003dcm.2	-	4	1404	c.516G>A	c.(514-516)CTG>CTA	p.L172L	PCBP4_uc003dch.1_5'Flank|PCBP4_uc003dci.1_5'Flank|PCBP4_uc003dcj.1_5'Flank|PCBP4_uc003dck.1_5'Flank|ABHD14B_uc010hly.2_Silent_p.L76L|ABHD14B_uc011bdy.1_Silent_p.L172L|ABHD14B_uc003dcn.2_Silent_p.L172L|ABHD14B_uc011bdz.1_3'UTR	NM_032750	NP_116139	Q96IU4	ABHEB_HUMAN	abhydrolase domain containing 14B	172						cytoplasm|nucleus	hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000548)|KIRC - Kidney renal clear cell carcinoma(197;0.00072)		GCAGCTGCTTCAGGTGCTCAA	0.592													31	84					0	0	0.005524	0	0
DNAH1	25981	broad.mit.edu	37	3	52384040	52384040	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52384040C>T	uc011bef.1	+	15	2823	c.2562C>T	c.(2560-2562)ATC>ATT	p.I854I	DNAH1_uc003ddt.1_Silent_p.I854I	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	854	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCCGCAAGATCTATGAGAAGC	0.632													4	28					0	0	0.001984	0	0
DNAH1	25981	broad.mit.edu	37	3	52394378	52394378	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52394378C>T	uc011bef.1	+	28	4884	c.4623C>T	c.(4621-4623)TTC>TTT	p.F1541F		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1541	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ATGCTGAGTTCATCTATGGCT	0.567													19	19					0	0	0.002299	0	0
STAB1	23166	broad.mit.edu	37	3	52542337	52542337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52542337C>T	uc003dej.2	+	21	2271	c.2197C>T	c.(2197-2199)CCT>TCT	p.P733S	STAB1_uc003dei.1_Missense_Mutation_p.P733S	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	733	EGF-like 5.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CACGCAGTGTCCTGGGGGCTT	0.562													17	64					0	0	0.007413	0	0
PBRM1	55193	broad.mit.edu	37	3	52620570	52620570	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52620570G>A	uc003des.2	-	20	3270	c.3258C>T	c.(3256-3258)GTC>GTT	p.V1086V	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Silent_p.V1086V|PBRM1_uc003der.2_Silent_p.V1054V|PBRM1_uc003det.2_Silent_p.V1101V|PBRM1_uc003deu.2_Silent_p.V1101V|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Silent_p.V1086V|PBRM1_uc010hmk.1_Silent_p.V1061V|PBRM1_uc003dey.2_Silent_p.V1061V|PBRM1_uc003dez.1_Silent_p.V1085V|PBRM1_uc003dfb.1_Silent_p.V998V|PBRM1_uc003dfa.1_Silent_p.V432V	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1086					chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CATCCCGAGGGACAAACCTGA	0.448			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								27	63					0	0	0.005443	0	0
ITIH1	3697	broad.mit.edu	37	3	52816259	52816259	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52816259C>T	uc003dfs.2	+	8	930	c.906C>T	c.(904-906)TCC>TCT	p.S302S	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	302	VWFA.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TCAGTGGCTCCATGAGAGGCC	0.498													18	25					0	0	0.006122	0	0
ITIH1	3697	broad.mit.edu	37	3	52821000	52821000	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52821000C>T	uc003dfs.2	+	14	1797	c.1773C>T	c.(1771-1773)TCC>TCT	p.S591S	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Silent_p.S192S|ITIH1_uc010hmo.1_Silent_p.S145S|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	591	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		ACCTGTCATCCCAGGCCCTGC	0.582													7	25					0	0	0.004482	0	0
ITIH4	3700	broad.mit.edu	37	3	52858519	52858519	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:52858519G>A	uc003dfz.2	-	8	975	c.939C>T	c.(937-939)ATC>ATT	p.I313I	ITIH4_uc011bel.1_Silent_p.I43I|ITIH4_uc003dfy.2_Silent_p.I177I|ITIH4_uc011bem.1_Silent_p.I313I|ITIH4_uc011ben.1_Silent_p.I313I	NM_002218	NP_002209	Q14624	ITIH4_HUMAN	inter-alpha (globulin) inhibitor H4	313	VWFA.				acute-phase response|hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TACTGAAGACGATGAGGTTGA	0.577													32	25					0	0	0.004289	0	0
CACNA1D	776	broad.mit.edu	37	3	53757543	53757543	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:53757543C>T	uc003dgv.3	+	13	1912	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	CACNA1D_uc003dgu.3_Silent_p.F603F|CACNA1D_uc003dgy.3_Silent_p.F583F|CACNA1D_uc003dgw.3_Silent_p.F250F	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	583	Cytoplasmic (Potential).|II.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	AAGCATATTTCGTCTCTCTTT	0.488													41	132					0	0	0.002222	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604011	54604011	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:54604011C>T	uc003dhf.2	+	8	816	c.768C>T	c.(766-768)GAC>GAT	p.D256D	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.D162D|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Translation_Start_Site	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	256	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CTCCGAAAGACGTGGTCATTT	0.428													19	52					0	0	0.001216	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604065	54604065	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:54604065C>T	uc003dhf.2	+	8	870	c.822C>T	c.(820-822)ATC>ATT	p.I274I	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.I180I|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.I8I	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	274	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GTCTGACTATCGCGAAGCAAA	0.463													54	46					0	0	0.003610	0	0
LRTM1	57408	broad.mit.edu	37	3	54958747	54958748	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:54958747_54958748GA>AT	uc003dhl.2	-	2	636_637	c.502_503TC>AT	c.(502-504)TCC>ATC	p.S168I	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	168	Extracellular (Potential).|LRR 5.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		ACTGGGCATGGATTCCAGGAGC	0.475													18	54					0	0	0.004672	0	0
ERC2	26059	broad.mit.edu	37	3	55733504	55733504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:55733504C>T	uc003dhr.1	-	16	3005	c.2749G>A	c.(2749-2751)GAT>AAT	p.D917N	ERC2_uc003dhq.1_RNA	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	917	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		tggtCATCATCATAGTTGTCT	0.383													50	145					0	0	0.003610	0	0
ERC2	26059	broad.mit.edu	37	3	56330159	56330159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:56330159C>T	uc003dhr.1	-	3	1218	c.962G>A	c.(961-963)AGC>AAC	p.S321N		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	321	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ATCCTCCAGGCTTTTGGATGG	0.453													65	182					0	0	0.003610	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56789060	56789060	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:56789060G>A	uc003dig.2	-	3	493	c.324C>T	c.(322-324)TTC>TTT	p.F108F	ARHGEF3_uc011bew.1_Silent_p.F108F|ARHGEF3_uc003dih.2_Silent_p.F140F|ARHGEF3_uc011bev.1_Silent_p.F79F|ARHGEF3_uc003dif.2_Silent_p.F114F|ARHGEF3_uc010hmy.1_5'UTR|ARHGEF3_uc003dii.2_Silent_p.F108F	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	108					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		CGCACACATCGAAGGTCTCAC	0.582													26	72					0	0	0.006320	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58183700	58183700	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:58183700G>A	uc003djo.1	-	6	649	c.552C>T	c.(550-552)TTC>TTT	p.F184F	DNASE1L3_uc011bfd.1_Silent_p.F154F|DNASE1L3_uc003djp.1_Silent_p.F184F|DNASE1L3_uc003djq.1_Silent_p.F184F	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	184					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		CCATGAAAATGAAATTCTAAA	0.517													12	24					0	0	0.002450	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58196577	58196577	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:58196577C>T	uc003djo.1	-	1	154	c.57G>A	c.(55-57)CTG>CTA	p.L19L	DNASE1L3_uc011bfd.1_Silent_p.L19L|DNASE1L3_uc003djp.1_Silent_p.L19L|DNASE1L3_uc003djq.1_Silent_p.L19L	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	19			L -> V (in a breast cancer sample; somatic mutation).		apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters	p.L19V(1)		breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		TCCTCATGGCCAGGGCGCTGT	0.567													25	56					0	0	0.003954	0	0
MAGI1	9223	broad.mit.edu	37	3	65365004	65365004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:65365004C>T	uc003dmn.2	-	17	3453	c.2927G>A	c.(2926-2928)GGG>GAG	p.G976E	MAGI1_uc003dmm.2_Missense_Mutation_p.G1004E|MAGI1_uc003dmo.2_Missense_Mutation_p.G1004E|MAGI1_uc003dmp.2_Missense_Mutation_p.G976E|MAGI1_uc003dmq.1_RNA|MAGI1_uc010hnx.1_Missense_Mutation_p.G287E	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1004	PDZ 5.|Interaction with FCHSD2.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CTCGTTCTCCCCGCGCCGGAT	0.458													4	12					0	0	0.000248	0	0
MAGI1	9223	broad.mit.edu	37	3	65439006	65439006	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:65439006C>T	uc003dmn.2	-	6	1495	c.969G>A	c.(967-969)ACG>ACA	p.T323T	MAGI1_uc003dmm.2_Silent_p.T323T|MAGI1_uc003dmo.2_Silent_p.T323T|MAGI1_uc003dmp.2_Silent_p.T323T|MAGI1_uc010hny.2_Silent_p.T208T|MAGI1_uc003dmr.2_Silent_p.T324T	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	323	WW 1.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		ATGTTGTTTTCGTGTTATGGC	0.403													29	67					0	0	0.002096	0	0
C3orf64	285203	broad.mit.edu	37	3	69053543	69053543	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:69053543G>A	uc003dnl.2	-	8	1011	c.606C>T	c.(604-606)AGC>AGT	p.S202S	C3orf64_uc003dnj.2_5'Flank|C3orf64_uc003dnk.2_Silent_p.S202S|C3orf64_uc011bfw.1_RNA|C3orf64_uc003dnm.1_RNA	NM_173654	NP_775925	Q5NDL2	AER61_HUMAN	AER61 glycosyltransferase	202						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)	1		Lung NSC(201;0.126)		BRCA - Breast invasive adenocarcinoma(55;4.61e-05)|Epithelial(33;0.000291)|LUSC - Lung squamous cell carcinoma(21;0.0127)|KIRC - Kidney renal clear cell carcinoma(39;0.216)		ACTGCAGAGGGCTTTTGCGCT	0.398													37	29					0	0	0.005524	0	0
LMOD3	56203	broad.mit.edu	37	3	69168514	69168514	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:69168514A>G	uc003dns.2	-	2	1201	c.992T>C	c.(991-993)ATG>ACG	p.M331T	LMOD3_uc003dnt.2_Missense_Mutation_p.M331T	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	331						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		GAGACACCTCATGATGGCCAC	0.453													64	208					0	0	0.003610	0	0
FRMD4B	23150	broad.mit.edu	37	3	69246190	69246190	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:69246190C>T	uc003dnv.2	-	13	1244	c.954_splice	c.e13-1	p.R318_splice	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Splice_Site|FRMD4B_uc011bga.1_Splice_Site_p.R162_splice	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B							cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		AACTGAAATCCTGAAAGATTA	0.418													3	21					0	0	0.004672	0	0
RYBP	23429	broad.mit.edu	37	3	72427681	72427681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:72427681G>A	uc003dpe.2	-	4	629	c.512C>T	c.(511-513)TCG>TTG	p.S171L		NM_012234	NP_036366	Q8N488	RYBP_HUMAN	RING1 and YY1 binding protein	181	Interaction with E4TF1B.|Ser-rich.				apoptosis|histone H2A monoubiquitination|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding				0		Prostate(10;0.00174)|Lung NSC(201;0.0659)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;0.000197)|Epithelial(33;0.00068)|LUSC - Lung squamous cell carcinoma(21;0.00228)|Lung(16;0.00677)|KIRC - Kidney renal clear cell carcinoma(39;0.198)|Kidney(39;0.232)		TGAGGATGTCGATGAGGAGCG	0.547													8	24					0	0	0.004482	0	0
PDZRN3	23024	broad.mit.edu	37	3	73432573	73432573	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:73432573T>C	uc003dpl.1	-	10	3240	c.3144A>G	c.(3142-3144)ACA>ACG	p.T1048T	PDZRN3_uc011bgh.1_Silent_p.T705T|PDZRN3_uc010hoe.1_Silent_p.T746T|PDZRN3_uc011bgf.1_Silent_p.T765T|PDZRN3_uc011bgg.1_Silent_p.T768T	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	1048							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CCGGGGATTTTGTGCCGTGGG	0.408													30	99					0	0	0.001512	0	0
EPHA6	285220	broad.mit.edu	37	3	96706726	96706726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:96706726G>A	uc010how.1	+	3	1046	c.1003G>A	c.(1003-1005)GAA>AAA	p.E335K	EPHA6_uc003drp.1_Missense_Mutation_p.E335K	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	240	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GAAGAGTGCTGAAGAGCGTGA	0.478													33	110					0	0	0.003755	0	0
EPHA6	285220	broad.mit.edu	37	3	97311555	97311555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:97311555G>A	uc010how.1	+	12	2529	c.2486G>A	c.(2485-2487)GGA>GAA	p.G829E	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.G195E|EPHA6_uc003drs.3_Missense_Mutation_p.G221E|EPHA6_uc003drr.3_Missense_Mutation_p.G221E|EPHA6_uc003drt.2_Missense_Mutation_p.G221E|EPHA6_uc010hox.1_Intron	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	734	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCAGGGGGAGGATCTTTGCCC	0.547													12	24					0	0	0.001368	0	0
GABRR3	200959	broad.mit.edu	37	3	97711711	97711711	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:97711711G>A	uc011bgr.1	-	8	1089	c.1089C>T	c.(1087-1089)TTC>TTT	p.F363F		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	363	Cytoplasmic (Potential).|Interaction with SQSTM1 (By similarity).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						CTGTCTTCTTGAATTGTTTCC	0.473													48	143					0	0	0.003610	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806465	97806465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:97806465C>T	uc011bgs.1	+	1	449	c.449C>T	c.(448-450)TCA>TTA	p.S150L		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTAAGTATTTCATATGTAATT	0.388													38	120					0	0	0.007835	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806560	97806560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:97806560G>A	uc011bgs.1	+	1	544	c.544G>A	c.(544-546)GAA>AAA	p.E182K		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTCTACTGTGAAATTTTACA	0.308													17	60					0	0	0.006122	0	0
OR5H6	79295	broad.mit.edu	37	3	97983782	97983782	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:97983782C>T	uc003dsi.1	+	1	654	c.654C>T	c.(652-654)TTC>TTT	p.F218F		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F218F(1)		skin(2)|large_intestine(1)	3						TTTTTATTTTCGCAGGTTCTG	0.299													6	28					0	0	0.001984	0	0
OR5H2	79310	broad.mit.edu	37	3	98002019	98002019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:98002019G>A	uc003dsj.1	+	1	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAAACAGGATGATATCTCTGT	0.373													74	62					0	0	0.003610	0	0
OR5H2	79310	broad.mit.edu	37	3	98002309	98002309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:98002309C>T	uc003dsj.1	+	1	578	c.578C>T	c.(577-579)TCC>TTC	p.S193F		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTTATGATTTCCTGTACTGAC	0.308													17	36					0	0	0.004990	0	0
OR5K3	403277	broad.mit.edu	37	3	98110187	98110187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:98110187G>A	uc011bgw.1	+	1	678	c.678G>A	c.(676-678)ATG>ATA	p.M226I		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATTTACAATGAAATCCAAGG	0.343													12	65					0	0	0.000978	0	0
FILIP1L	11259	broad.mit.edu	37	3	99567805	99567805	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:99567805C>T	uc003dtm.2	-	5	3178	c.2715G>A	c.(2713-2715)AAG>AAA	p.K905K	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Silent_p.K905K|FILIP1L_uc010hpf.2_Silent_p.K481K|FILIP1L_uc010hpg.2_Silent_p.K665K|FILIP1L_uc003dtn.2_Silent_p.K665K|FILIP1L_uc003dtp.1_Silent_p.K665K	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	905						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						CTGGAGTAACCTTTATATGAA	0.448													133	81					0	0	0.003610	0	0
TMEM45A	55076	broad.mit.edu	37	3	100275807	100275807	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:100275807T>C	uc003dtz.1	+	3	707	c.394T>C	c.(394-396)TTT>CTT	p.F132L	TMEM45A_uc003dua.1_Missense_Mutation_p.F148L	NM_018004	NP_060474	Q9NWC5	TM45A_HUMAN	transmembrane protein 45A	132						integral to membrane				skin(2)|ovary(1)	3						AAATGCCTTATTTGTGGAGGG	0.383													68	53					0	0	0.003610	0	0
GPR128	84873	broad.mit.edu	37	3	100348442	100348442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:100348442G>A	uc003duc.2	+	2	384	c.116G>A	c.(115-117)GGA>GAA	p.G39E		NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	39	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						GTTTCTTTAGGAAAATCTACT	0.408													9	28					0	0	0.004482	0	0
SENP7	57337	broad.mit.edu	37	3	101062792	101062792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:101062792G>A	uc003dut.2	-	14	1955	c.1844C>T	c.(1843-1845)TCT>TTT	p.S615F	SENP7_uc003duu.2_Missense_Mutation_p.S550F|SENP7_uc003duv.2_Missense_Mutation_p.S582F|SENP7_uc003duw.2_Missense_Mutation_p.S549F|SENP7_uc003dux.2_Missense_Mutation_p.S451F	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	615					proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						GAATTCACTAGATTTTGCTAC	0.259													5	5					0	0	0.001168	0	0
RG9MTD1	54931	broad.mit.edu	37	3	101284252	101284252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:101284252G>A	uc003duz.2	+	2	775	c.627G>A	c.(625-627)ATG>ATA	p.M209I		NM_017819	NP_060289	Q7L0Y3	MRRP1_HUMAN	RNA (guanine-9-) methyltransferase domain	209					tRNA processing	mitochondrion	methyltransferase activity|protein binding			ovary(1)	1						TTTTTGACATGGCTTACGAAA	0.393													36	32					0	0	0.004289	0	0
CEP97	79598	broad.mit.edu	37	3	101446231	101446231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:101446231C>T	uc003dvk.1	+	3	218	c.191C>T	c.(190-192)TCA>TTA	p.S64L	CEP97_uc010hpm.1_Missense_Mutation_p.S64L|CEP97_uc011bhf.1_Missense_Mutation_p.S64L|CEP97_uc003dvl.1_5'UTR	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	64	LRR 2.					centrosome|nucleus	protein binding			ovary(2)	2						TTACAGTTATCAGTAGCTAAT	0.348													18	54					0	0	0.001216	0	0
MYH15	22989	broad.mit.edu	37	3	108107886	108107886	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:108107886G>A	uc003dxa.1	-	39	5583	c.5526C>T	c.(5524-5526)ATC>ATT	p.I1842I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1842	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CACTGCGACGGATTTCACCCT	0.537													29	77					0	0	0.002096	0	0
DZIP3	9666	broad.mit.edu	37	3	108409671	108409671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:108409671C>T	uc003dxd.2	+	32	3976	c.3554C>T	c.(3553-3555)CCA>CTA	p.P1185L	DZIP3_uc003dxf.1_Missense_Mutation_p.P1185L|DZIP3_uc011bhm.1_Missense_Mutation_p.P636L	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	1185	RING-type; atypical.				protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GGGACATGTCCAACGTGCAGA	0.502													26	69					0	0	0.002445	0	0
MORC1	27136	broad.mit.edu	37	3	108724056	108724056	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:108724056A>G	uc003dxl.2	-	19	1961	c.1874T>C	c.(1873-1875)ATA>ACA	p.I625T	MORC1_uc011bhn.1_Missense_Mutation_p.I604T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	625					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGTCTCTTCTATGTTTCTTTT	0.388													14	43					0	0	0.002450	0	0
DPPA2	151871	broad.mit.edu	37	3	109023324	109023324	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:109023324C>T	uc003dxo.2	-	7	1099	c.852G>A	c.(850-852)AAG>AAA	p.K284K		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	284						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						AGGGTTACCTCTTAGCACAGT	0.418													8	32					0	0	0.006214	0	0
CD96	10225	broad.mit.edu	37	3	111296348	111296348	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:111296348G>A	uc003dxw.2	+	4	714	c.544_splice	c.e4-1	p.E182_splice	CD96_uc003dxv.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor						cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						TTCTTCCTTAGGAAAACAGCA	0.423									Opitz_Trigonocephaly_syndrome				42	124					0	0	0.003610	0	0
CD96	10225	broad.mit.edu	37	3	111297971	111297971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:111297971G>A	uc003dxw.2	+	5	859	c.689G>A	c.(688-690)AGA>AAA	p.R230K	CD96_uc003dxv.2_Missense_Mutation_p.R214K|CD96_uc003dxx.2_Missense_Mutation_p.R214K|CD96_uc010hpy.1_Missense_Mutation_p.R214K	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	230	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						ACAGACTACAGACTCCACCTC	0.453									Opitz_Trigonocephaly_syndrome				41	30					0	0	0.007835	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375101	113375101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:113375101C>T	uc003eam.2	-	7	5839	c.5428G>A	c.(5428-5430)GAC>AAC	p.D1810N	KIAA2018_uc003eal.2_Missense_Mutation_p.D1754N	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1810					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TTTTCACTGTCCCTTGATGGA	0.463													112	84					0	0	0.003610	0	0
ADPRH	141	broad.mit.edu	37	3	119301087	119301087	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:119301087G>A	uc003ecs.2	+	3	369	c.71G>A	c.(70-72)TGG>TAG	p.W24*	ADPRH_uc010hqv.2_Nonsense_Mutation_p.W24*|ADPRH_uc011bjb.1_Intron|ADPRH_uc003ect.2_Nonsense_Mutation_p.W24*	NM_001125	NP_001116	P54922	ADPRH_HUMAN	ADP-ribosylarginine hydrolase	24					protein de-ADP-ribosylation		ADP-ribosylarginine hydrolase activity|magnesium ion binding			ovary(1)	1		Lung NSC(201;0.0977)		GBM - Glioblastoma multiforme(114;0.23)		AATGGGAAGTGGGAGTTCCTC	0.572													10	36					0	0	0.006214	0	0
HGD	3081	broad.mit.edu	37	3	120360535	120360535	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:120360535G>A	uc003edw.2	-	11	1150	c.780C>T	c.(778-780)GTC>GTT	p.V260V	HGD_uc003edv.2_Silent_p.V119V	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	260					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TGAACGGGGAGACATCCTAAA	0.413													19	75					0	0	0.001523	0	0
STXBP5L	9515	broad.mit.edu	37	3	120673881	120673881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:120673881G>A	uc003eec.3	+	3	424	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	STXBP5L_uc011bji.1_Missense_Mutation_p.R95Q	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	95	WD 1.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGTGCTATACGAATGTATCCT	0.358													14	37					0	0	0.001855	0	0
STXBP5L	9515	broad.mit.edu	37	3	121126293	121126293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121126293G>A	uc003eec.3	+	24	3003	c.2863G>A	c.(2863-2865)GAA>AAA	p.E955K	STXBP5L_uc011bji.1_Missense_Mutation_p.E931K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	955	WD 12.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AATCTGCTCAGAAAAACAAGC	0.378													8	57					0	0	0.003080	0	0
POLQ	10721	broad.mit.edu	37	3	121208787	121208787	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121208787A>C	uc003eee.3	-	16	3120	c.2991T>G	c.(2989-2991)AAT>AAG	p.N997K	POLQ_uc003eed.2_Missense_Mutation_p.N169K	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	997					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		GCTTCTCTTTATTTATATCTA	0.363								DNA_polymerases_(catalytic_subunits)					17	54					0	0	0.006122	0	0
FBXO40	51725	broad.mit.edu	37	3	121341031	121341031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121341031C>T	uc003eeg.2	+	3	965	c.755C>T	c.(754-756)TCC>TTC	p.S252F		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	252					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GAACAGATTTCCAGTGGCCAT	0.458													8	23					0	0	0.003080	0	0
GOLGB1	2804	broad.mit.edu	37	3	121437283	121437283	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121437283G>A	uc003eei.3	-	8	948	c.822C>T	c.(820-822)GTC>GTT	p.V274V	GOLGB1_uc010hrc.2_Silent_p.V279V|GOLGB1_uc003eej.3_Silent_p.V240V|GOLGB1_uc011bjm.1_Silent_p.V160V|GOLGB1_uc010hrd.1_Silent_p.V238V	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	274	Potential.|Cytoplasmic (Potential).				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GCAAGTCAACGACCTGAGCAC	0.458													37	53					0	0	0.003214	0	0
SLC15A2	6565	broad.mit.edu	37	3	121615323	121615323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121615323C>T	uc003eep.2	+	2	329	c.176C>T	c.(175-177)TCC>TTC	p.S59F	SLC15A2_uc011bjn.1_Missense_Mutation_p.S59F	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	59	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	GAGCGCTTTTCCTATTATGGA	0.448													23	47					0	0	0.004656	0	0
ILDR1	286676	broad.mit.edu	37	3	121720279	121720279	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121720279G>A	uc003ees.2	-	5	628	c.522C>T	c.(520-522)ATC>ATT	p.I174I	ILDR1_uc003eeq.2_Silent_p.I186I|ILDR1_uc003eer.2_Silent_p.I174I|ILDR1_uc010hrg.2_Intron	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	174	Helical; (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		CTCCCAGGATGATGAAGATCA	0.542													18	21					0	0	0.007413	0	0
CASR	846	broad.mit.edu	37	3	121973151	121973151	+	Missense_Mutation	SNP	C	T	T	rs121909262		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121973151C>T	uc003eev.3	+	2	487	c.115C>T	c.(115-117)CCT>TCT	p.P39S	CASR_uc003eew.3_Missense_Mutation_p.P39S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	39	Extracellular (Potential).		P -> A (in FHH).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGGGCTCTTTCCTATTCATTT	0.527													25	58					0	0	0.006320	0	0
CASR	846	broad.mit.edu	37	3	121980966	121980966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121980966G>A	uc003eev.3	+	4	1456	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K	CASR_uc003eew.3_Missense_Mutation_p.E362K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	362	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCACCTCCAAGAAGGTGCAAA	0.507													11	44					0	0	0.000978	0	0
CASR	846	broad.mit.edu	37	3	121981248	121981248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:121981248G>A	uc003eev.3	+	4	1738	c.1366G>A	c.(1366-1368)GAG>AAG	p.E456K	CASR_uc003eew.3_Missense_Mutation_p.E456K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	456	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CAAGAAAGTTGAGGCGTGGCA	0.463													19	49					0	0	0.002299	0	0
CASR	846	broad.mit.edu	37	3	122003000	122003000	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:122003000C>T	uc003eev.3	+	7	2571	c.2199C>T	c.(2197-2199)TTC>TTT	p.F733F	CASR_uc003eew.3_Silent_p.F743F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	733	Helical; Name=4; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCTGCACCTTCATGCAGATTG	0.577													15	34					0	0	0.003163	0	0
PARP9	83666	broad.mit.edu	37	3	122269585	122269585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:122269585G>A	uc010hri.2	-	6	1422	c.1277C>T	c.(1276-1278)TCC>TTC	p.S426F	PARP9_uc003eff.3_Missense_Mutation_p.S391F|PARP9_uc011bjs.1_Missense_Mutation_p.S391F|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.S391F|PARP9_uc003efh.2_Missense_Mutation_p.S426F|PARP9_uc003efj.2_Missense_Mutation_p.S391F	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	426	Macro 2.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		GGCAGGAAAGGAAATGGAAGT	0.348													13	28					0	0	0.003163	0	0
MYLK	4638	broad.mit.edu	37	3	123419176	123419176	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:123419176G>A	uc003ego.2	-	18	3421	c.3139C>T	c.(3139-3141)CTG>TTG	p.L1047L	MYLK_uc011bjw.1_Silent_p.L1047L|MYLK_uc003egp.2_Silent_p.L978L|MYLK_uc003egq.2_Silent_p.L1047L|MYLK_uc003egr.2_Silent_p.L978L|MYLK_uc003egs.2_Silent_p.L871L|MYLK_uc003egt.2_Silent_p.L238L	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1047	6 X 12 AA approximate tandem repeats.|2-5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ATGGGCTTCAGGGTCTCGGCA	0.547													152	135					0	0	0.003610	0	0
KALRN	8997	broad.mit.edu	37	3	124351444	124351444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:124351444G>A	uc003ehg.2	+	35	5481	c.5354G>A	c.(5353-5355)GGA>GAA	p.G1785E	KALRN_uc003ehi.2_Missense_Mutation_p.G158E|KALRN_uc003ehk.2_Missense_Mutation_p.G88E|KALRN_uc003ehj.2_Missense_Mutation_p.G88E	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1785					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AAGGCAGATGGAAACATCAAA	0.552													30	82					0	0	0.001786	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125828895	125828895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:125828895C>T	uc003eim.1	-	20	2429	c.2239G>A	c.(2239-2241)GGG>AGG	p.G747R	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.G646R|ALDH1L1_uc003ein.1_Missense_Mutation_p.G282R	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	747	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTCTGCGGCCCGTGGTCGGTG	0.607													32	24					0	0	0.002445	0	0
UROC1	131669	broad.mit.edu	37	3	126220104	126220104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:126220104C>T	uc003eiz.1	-	10	954	c.922G>A	c.(922-924)GAG>AAG	p.E308K	UROC1_uc010hsi.1_Missense_Mutation_p.E368K	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	308					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CTGAGCACCTCCTTTTTTTTC	0.587													94	73					0	0	0.003610	0	0
UROC1	131669	broad.mit.edu	37	3	126224595	126224595	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:126224595C>T	uc003eiz.1	-	8	794	c.762G>A	c.(760-762)GGG>GGA	p.G254G	UROC1_uc010hsi.1_Silent_p.G254G	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	254					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TGGCCTGAGCCCCACTCATTC	0.512													14	36					0	0	0.003163	0	0
UROC1	131669	broad.mit.edu	37	3	126226630	126226630	+	Missense_Mutation	SNP	G	A	A	rs116272550	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:126226630G>A	uc003eiz.1	-	6	589	c.557C>T	c.(556-558)TCC>TTC	p.S186F	UROC1_uc010hsi.1_Missense_Mutation_p.S186F	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	186					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		CGTCCGGGAGGAGTAGTTGGG	0.557													24	55					0	0	0.001786	0	0
UROC1	131669	broad.mit.edu	37	3	126229580	126229580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:126229580G>A	uc003eiz.1	-	2	216	c.184C>T	c.(184-186)CCA>TCA	p.P62S	UROC1_uc010hsi.1_Missense_Mutation_p.P62S	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	62					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		GCAAACTCTGGGGCCAGCAGC	0.607													9	23					0	0	0.006214	0	0
GATA2	2624	broad.mit.edu	37	3	128205204	128205204	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:128205204C>T	uc003ekm.3	-	4	672	c.237G>A	c.(235-237)CTG>CTA	p.L79L	GATA2_uc003ekn.3_Silent_p.L79L|GATA2_uc003eko.2_Silent_p.L79L|uc003ekp.2_5'Flank	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	79					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GGCCTCCGGTCAGGCGGGCTG	0.652			Mis		AML(CML blast transformation)								7	20					0	0	0.000673	0	0
GATA2	2624	broad.mit.edu	37	3	128205212	128205212	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:128205212C>T	uc003ekm.3	-	4	665	c.230_splice	c.e4-1	p.A77_splice	GATA2_uc003ekn.3_Splice_Site_p.A77_splice|GATA2_uc003eko.2_Splice_Site_p.A77_splice|uc003ekp.2_5'Flank	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1						blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GTCAGGCGGGCTGCGGGCAAA	0.642			Mis		AML(CML blast transformation)								5	22					0	0	0.001168	0	0
ACAD9	28976	broad.mit.edu	37	3	128627937	128627937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:128627937C>T	uc003ela.3	+	14	1682	c.1480C>T	c.(1480-1482)CTT>TTT	p.L494F	ACAD9_uc010hsw.1_3'UTR|ACAD9_uc011bks.1_Missense_Mutation_p.L371F|ACAD9_uc003elb.2_Missense_Mutation_p.L371F|ACAD9_uc003eld.1_RNA|ACAD9_uc003ele.2_Missense_Mutation_p.L146F	NM_014049	NP_054768	Q9H845	ACAD9_HUMAN	acyl-Coenzyme A dehydrogenase family, member 9	494						mitochondrion	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding			ovary(2)|central_nervous_system(1)	3						GCACCCCAGTCTTGCGGTGAG	0.597													13	14					0	0	0.001368	0	0
COL29A1	256076	broad.mit.edu	37	3	130188179	130188179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:130188179C>T	uc010htj.1	+	38	7825	c.7331C>T	c.(7330-7332)TCC>TTC	p.S2444F	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.S483F	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2444	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						TTTGTGTTTTCCTTTGGCCCT	0.443													25	8					0	0	0.003954	0	0
COL6A6	131873	broad.mit.edu	37	3	130345328	130345328	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:130345328G>A	uc010htl.2	+	24	4910	c.4879_splice	c.e24-1	p.G1627_splice	COL6A6_uc003eni.3_Splice_Site	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor						axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CTGTTTAACAGGGAGAACCTG	0.438													28	29					0	0	0.002445	0	0
ACPP	55	broad.mit.edu	37	3	132071617	132071617	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:132071617C>T	uc010htp.2	+	9	1008	c.918C>T	c.(916-918)CTC>CTT	p.L306L	ACPP_uc003eon.3_Silent_p.L273L|ACPP_uc003eop.3_Silent_p.L306L	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	306						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						ACAACGGACTCCTTCCTCCCT	0.433													30	42					0	0	0.003271	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133663997	133663997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:133663997G>A	uc003eqa.3	-	10	1677	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	SLCO2A1_uc003eqb.3_Missense_Mutation_p.S392F|SLCO2A1_uc011blv.1_Missense_Mutation_p.S287F	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	468	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						ATGGCAAGGGGAGAGGTACTC	0.582													40	130					0	0	0.002222	0	0
KY	339855	broad.mit.edu	37	3	134323202	134323202	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:134323202A>G	uc010hty.2	-	11	1267	c.1205T>C	c.(1204-1206)TTG>TCG	p.L402S	KY_uc011blw.1_3'UTR|KY_uc011blx.1_Missense_Mutation_p.L381S	NM_178554	NP_848649	Q8NBH2	KY_HUMAN	kyphoscoliosis peptidase	402						cytoskeleton|Z disc	peptidase activity			ovary(2)	2						GTACACCTCCAACTTCATCCC	0.547													19	59					0	0	0.007413	0	0
DZIP1L	199221	broad.mit.edu	37	3	137781670	137781670	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:137781670G>A	uc003erq.2	-	16	2655	c.2292C>T	c.(2290-2292)GTC>GTT	p.V764V		NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	764						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						ACCAGGCAGGGACCCTGGGTT	0.597													90	251					0	0	0.003610	0	0
DZIP1L	199221	broad.mit.edu	37	3	137790621	137790621	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:137790621G>A	uc003erq.2	-	12	1842	c.1479C>T	c.(1477-1479)GTC>GTT	p.V493V	DZIP1L_uc003err.1_Silent_p.V493V	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	493						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						GCTCCCGCTGGACTCTCAGCA	0.517													75	160					0	0	0.003610	0	0
ARMC8	25852	broad.mit.edu	37	3	137991881	137991881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:137991881C>T	uc003esa.1	+	18	1877	c.1510C>T	c.(1510-1512)CGG>TGG	p.R504W	TXNDC6_uc003esd.1_Intron|TXNDC6_uc010huf.1_Intron|TXNDC6_uc003ese.1_Intron|ARMC8_uc011bmf.1_Missense_Mutation_p.R487W|ARMC8_uc011bmg.1_Missense_Mutation_p.R451W|ARMC8_uc011bmh.1_Missense_Mutation_p.R445W|ARMC8_uc003esb.1_Missense_Mutation_p.R476W|ARMC8_uc003esc.1_Missense_Mutation_p.R276W|ARMC8_uc003esf.1_Missense_Mutation_p.R87W	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	518	ARM 11.						binding				0						ACAGCTATTCCGGTTATTATC	0.373													180	412					0	0	0.003610	0	0
NMNAT3	349565	broad.mit.edu	37	3	139297746	139297746	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:139297746C>T	uc003etj.2	-	2	301	c.261G>A	c.(259-261)CAG>CAA	p.Q87Q	NMNAT3_uc003etk.2_Silent_p.Q50Q|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	87					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						TCCACTGTGCCTGCTCACTCT	0.592													11	26					0	0	0.001855	0	0
CLSTN2	64084	broad.mit.edu	37	3	140122557	140122557	+	Missense_Mutation	SNP	C	T	T	rs150165907		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:140122557C>T	uc003etn.2	+	3	509	c.319C>T	c.(319-321)CGT>TGT	p.R107C	CLSTN2_uc003etm.2_Missense_Mutation_p.R107C	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	107	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGGCCGGCTCCGTGCCAAGAG	0.562										HNSCC(16;0.037)			38	105					0	0	0.004878	0	0
GRK7	131890	broad.mit.edu	37	3	141497610	141497611	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:141497610_141497611CC>TT	uc011bnd.1	+	1	568_569	c.484_485CC>TT	c.(484-486)CCC>TTC	p.P162F		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	162	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						GCAAGAGCAGCCCTTTAAGGAT	0.55													20	55					0	0	0.004672	0	0
ATR	545	broad.mit.edu	37	3	142217497	142217497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:142217497G>A	uc003eux.3	-	32	5622	c.5500C>T	c.(5500-5502)CTT>TTT	p.L1834F		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1834	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						GCAGCTGAAAGAGGTACAATT	0.368								Other_conserved_DNA_damage_response_genes					9	21					0	0	0.004482	0	0
PLS1	5357	broad.mit.edu	37	3	142430402	142430402	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:142430402T>C	uc010huv.2	+	15	1848	c.1689T>C	c.(1687-1689)AAT>AAC	p.N563N	PLS1_uc003euz.2_Silent_p.N563N|PLS1_uc003eva.2_Silent_p.N563N	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	563	CH 4.|Actin-binding 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TTGCACCAAATGCAGTTCGTC	0.348													15	46					0	0	0.004990	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142561813	142561813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:142561813G>A	uc003evd.2	-	4	722	c.526C>T	c.(526-528)CCT>TCT	p.P176S		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	176	CUB 2.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						ACTCCTGCAGGGTAATCCCGG	0.483													22	43					0	0	0.002299	0	0
SLC9A9	285195	broad.mit.edu	37	3	142985652	142985652	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:142985652T>C	uc003evn.2	-	16	2012	c.1830A>G	c.(1828-1830)AAA>AAG	p.K610K		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	610					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GGGGTGAAGCTTTCTGGTCCA	0.512													46	53					0	0	0.003610	0	0
SLC9A9	285195	broad.mit.edu	37	3	142985654	142985654	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:142985654T>A	uc003evn.2	-	16	2010	c.1828A>T	c.(1828-1830)AAA>TAA	p.K610*		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	610					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GGTGAAGCTTTCTGGTCCAGA	0.512													45	52					0	0	0.003610	0	0
SLC9A9	285195	broad.mit.edu	37	3	143297500	143297500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:143297500G>A	uc003evn.2	-	7	1003	c.821C>T	c.(820-822)TCT>TTT	p.S274F	SLC9A9_uc011bnk.1_Missense_Mutation_p.S148F	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	274					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						ATTCCCCACAGACTGGAAGAA	0.458													16	41					0	0	0.003163	0	0
ZIC1	7545	broad.mit.edu	37	3	147131198	147131198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:147131198G>A	uc003ewe.2	+	3	1923	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	402	Ser-rich.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CTCTGGCTACGAATCCTCCAC	0.612													43	41					0	0	0.003610	0	0
CP	1356	broad.mit.edu	37	3	148930247	148930247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:148930247C>T	uc003ewy.3	-	2	638	c.385G>A	c.(385-387)GAA>AAA	p.E129K	CP_uc011bnr.1_RNA|CP_uc003ewz.2_Missense_Mutation_p.E129K	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	129	F5/8 type A 1.|Plastocyanin-like 1.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	CCCTCATGTTCCTTATAGTAA	0.368													8	28					0	0	0.004482	0	0
WWTR1	25937	broad.mit.edu	37	3	149260244	149260244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:149260244C>T	uc003exe.2	-	3	665	c.649G>A	c.(649-651)GGG>AGG	p.G217R	WWTR1_uc003exf.2_Missense_Mutation_p.G217R|WWTR1_uc011bns.1_Missense_Mutation_p.G217R|WWTR1_uc003exh.2_Missense_Mutation_p.G217R	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	217	Gln-rich.				hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			CTCATGAGCCCTGCGGGTGGG	0.557													10	46					0	0	0.000978	0	0
WWTR1	25937	broad.mit.edu	37	3	149375082	149375082	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:149375082G>A	uc003exe.2	-	1	28	c.12C>T	c.(10-12)GCC>GCT	p.A4A	WWTR1_uc003exf.2_Silent_p.A4A|WWTR1_uc011bns.1_Silent_p.A4A|WWTR1_uc003exh.2_Silent_p.A4A|uc010hvg.1_RNA|uc003exi.1_5'Flank	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	4					hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GGGGCGCCGAGGCCGGATTCA	0.562													18	13					0	0	0.007413	0	0
SELT	51714	broad.mit.edu	37	3	150340893	150340893	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:150340893G>A	uc011bnx.1	+	4	396	c.312G>A	c.(310-312)AAG>AAA	p.K104K		NM_016275	NP_057359	P62341	SELT_HUMAN	selenoprotein T precursor	104					cell redox homeostasis|selenocysteine incorporation		selenium binding				0			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TTGTTGGCAAGGATCCTTTTG	0.373													15	26					0	0	0.003163	0	0
MED12L	116931	broad.mit.edu	37	3	151094947	151094948	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:151094947_151094948GG>AA	uc003eyp.2	+	28	4230_4231	c.4192_4193GG>AA	c.(4192-4194)GGA>AAA	p.G1398K	MED12L_uc011bnz.1_Missense_Mutation_p.G1258K|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.G561K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1398					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GAGACAGAATGGAATAAAGACA	0.366													8	29					0	0	0.004672	0	0
MME	4311	broad.mit.edu	37	3	154886309	154886309	+	Silent	SNP	C	T	T	rs148809350		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:154886309C>T	uc010hvr.1	+	19	2020	c.1809C>T	c.(1807-1809)CTC>CTT	p.L603L	MME_uc003fab.1_Silent_p.L603L|MME_uc003fac.1_Silent_p.L603L|MME_uc003fad.1_Silent_p.L603L|MME_uc003fae.1_Silent_p.L603L	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	603	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	ATGGAGACCTCGTTGACTGGT	0.378													16	15					0	0	0.004007	0	0
PLCH1	23007	broad.mit.edu	37	3	155199919	155199919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:155199919G>A	uc011bok.1	-	23	4197	c.3920C>T	c.(3919-3921)TCC>TTC	p.S1307F	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.S1269F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1307					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGTATTAGGGGATCCAGGCAG	0.493													46	93					0	0	0.003214	0	0
PLCH1	23007	broad.mit.edu	37	3	155211982	155211982	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:155211982G>A	uc011bok.1	-	16	2371	c.2094C>T	c.(2092-2094)TTC>TTT	p.F698F	PLCH1_uc011boj.1_Silent_p.F698F|PLCH1_uc011bol.1_Silent_p.F680F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	698	PI-PLC Y-box.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CATTTGCCTTGAATTTGGCTC	0.408													18	68					0	0	0.001523	0	0
GFM1	85476	broad.mit.edu	37	3	158363443	158363443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:158363443C>T	uc003fce.2	+	2	214	c.107C>T	c.(106-108)TCT>TTT	p.S36F	GFM1_uc003fcd.2_Missense_Mutation_p.S36F|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_5'Flank	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	36					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TGCCGATGGTCTTCATCAGGG	0.373													16	37					0	0	0.006122	0	0
OTOL1	131149	broad.mit.edu	37	3	161214732	161214732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:161214732C>T	uc011bpb.1	+	1	137	c.137C>T	c.(136-138)CCA>CTA	p.P46L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	46						collagen					0						GGTCTAAAGCCATCCAGTGGC	0.443													30	20					0	0	0.006320	0	0
SI	6476	broad.mit.edu	37	3	164776809	164776809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:164776809C>T	uc003fei.2	-	12	1402	c.1340G>A	c.(1339-1341)GGA>GAA	p.G447E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	447	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TTGTGTGTTTCCCCTCTCATA	0.353										HNSCC(35;0.089)			11	17					0	0	0.001855	0	0
SI	6476	broad.mit.edu	37	3	164792420	164792420	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:164792420G>C	uc003fei.2	-	3	216	c.154C>G	c.(154-156)CGT>GGT	p.R52G		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	52	Ser/Thr-rich.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTAGTCACACGAGTAGTAGCT	0.333										HNSCC(35;0.089)			15	24					0	0	0.001523	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906936	164906936	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:164906936C>T	uc003fej.3	-	2	2127	c.1683G>A	c.(1681-1683)GAG>GAA	p.E561E	SLITRK3_uc003fek.2_Silent_p.E561E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	561	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCCAAGGATTCTCATTGAGGT	0.532										HNSCC(40;0.11)			13	41					0	0	0.003163	0	0
WDR49	151790	broad.mit.edu	37	3	167322099	167322099	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:167322099G>A	uc003fev.1	-	2	399	c.93C>T	c.(91-93)CTC>CTT	p.L31L	WDR49_uc011bpd.1_Silent_p.L84L|WDR49_uc003few.1_Silent_p.L372L	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	31	WD 1.									large_intestine(1)|ovary(1)|skin(1)	3						CAATTAAATTGAGCCGAGAGT	0.393													10	34					0	0	0.000673	0	0
MECOM	2122	broad.mit.edu	37	3	168813034	168813034	+	Splice_Site	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:168813034C>G	uc003ffi.3	-	12	2555	c.2286_splice	c.e12-1	p.R762_splice	MECOM_uc010hwk.1_Splice_Site_p.R776_splice|MECOM_uc003ffj.3_Splice_Site_p.R827_splice|MECOM_uc011bpi.1_Splice_Site_p.R754_splice|MECOM_uc003ffn.3_Splice_Site_p.R762_splice|MECOM_uc003ffk.2_Splice_Site_p.R753_splice|MECOM_uc003ffl.2_Splice_Site_p.R913_splice|MECOM_uc011bpj.1_Splice_Site_p.R950_splice|MECOM_uc011bpk.1_Splice_Site_p.R752_splice	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b						apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)		lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GTATTTGCATCTGAAAAATAA	0.333													4	23					0	0	0.000248	0	0
LRRC34	151827	broad.mit.edu	37	3	169525424	169525424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:169525424C>T	uc003ffx.2	-	3	307	c.292G>A	c.(292-294)GAT>AAT	p.D98N	LRRC34_uc003ffy.2_Missense_Mutation_p.D98N|LRRC34_uc011bpn.1_Missense_Mutation_p.D98N|LRRC34_uc003ffz.2_Missense_Mutation_p.D50N|LRRC34_uc003fga.3_Missense_Mutation_p.D50N	NM_153353	NP_699184	Q8IZ02	LRC34_HUMAN	leucine rich repeat containing 34	98											0	all_cancers(22;4.12e-22)|all_epithelial(15;7.54e-27)|all_lung(20;1.63e-16)|Lung NSC(18;6.92e-16)|Ovarian(172;0.000223)|Breast(254;0.197)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			ATCCAAAAATCTTCACCTGTA	0.303													12	55					0	0	0.003163	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169539830	169539830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:169539830C>T	uc003fgb.2	+	1	121	c.121C>T	c.(121-123)CCT>TCT	p.P41S		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	41	LRR 1.										0						GACTGCCATTCCTTTGGAGAT	0.378													29	71					0	0	0.002836	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198732	170198732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:170198732C>T	uc003fgz.2	-	7	1655	c.1339G>A	c.(1339-1341)GAG>AAG	p.E447K	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	447						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			TTGGTGTGCTCCTCAGACAAG	0.527													37	39					0	0	0.003755	0	0
TNIK	23043	broad.mit.edu	37	3	170879094	170879094	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:170879094C>T	uc003fhh.2	-	11	1326	c.981G>A	c.(979-981)GAG>GAA	p.E327E	TNIK_uc003fhi.2_Silent_p.E327E|TNIK_uc003fhj.2_Silent_p.E327E|TNIK_uc003fhk.2_Silent_p.E327E|TNIK_uc003fhl.2_Silent_p.E327E|TNIK_uc003fhm.2_Silent_p.E327E|TNIK_uc003fhn.2_Silent_p.E327E|TNIK_uc003fho.2_Silent_p.E327E	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	327	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CCTCTTCTTCCTCACTTCCAC	0.303													17	35					0	0	0.006122	0	0
PLD1	5337	broad.mit.edu	37	3	171452666	171452666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:171452666G>A	uc003fhs.2	-	5	645	c.529C>T	c.(529-531)CTT>TTT	p.L177F	PLD1_uc003fht.2_Missense_Mutation_p.L177F	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	177	PX.				cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CTTCTACCAAGGAATTGTTCT	0.438													27	92					0	0	0.005443	0	0
YEATS2	55689	broad.mit.edu	37	3	183476713	183476713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:183476713C>T	uc003fly.2	+	13	1811	c.1616C>T	c.(1615-1617)CCT>CTT	p.P539L		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	539					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCCCCTGTTCCTAAAATTCAT	0.363													25	52					0	0	0.003954	0	0
HTR3E	285242	broad.mit.edu	37	3	183823756	183823756	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:183823756C>T	uc010hxq.2	+	7	1390	c.924C>T	c.(922-924)ATC>ATT	p.I308I	HTR3E_uc003fml.3_Silent_p.I293I|HTR3E_uc003fmm.2_Silent_p.I323I|HTR3E_uc010hxr.2_Silent_p.I334I|HTR3E_uc003fmn.2_Silent_p.I308I	NM_182589	NP_872395	A5X5Y0	5HT3E_HUMAN	5-hydroxytryptamine receptor 3 subunit E	308	Helical; Name=3; (Potential).					integral to membrane|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(143;1.46e-10)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCCCCCTCATCGGTATGGCTC	0.547													43	111					0	0	0.003610	0	0
EIF4G1	1981	broad.mit.edu	37	3	184035215	184035215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:184035215C>T	uc003fnp.2	+	5	452	c.254C>T	c.(253-255)TCC>TTC	p.S85F	EIF4G1_uc003fno.1_Intron|EIF4G1_uc010hxw.1_Intron|EIF4G1_uc003fnt.2_Intron|EIF4G1_uc003fnq.2_5'UTR|EIF4G1_uc003fnr.2_Intron|EIF4G1_uc010hxx.2_Missense_Mutation_p.S92F|EIF4G1_uc003fns.2_Missense_Mutation_p.S45F|EIF4G1_uc010hxy.2_Missense_Mutation_p.S92F|EIF4G1_uc010hxz.1_5'UTR|EIF4G1_uc003fnv.3_Missense_Mutation_p.S85F|EIF4G1_uc003fnu.3_Missense_Mutation_p.S85F|EIF4G1_uc003fnw.2_Missense_Mutation_p.S92F	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	85					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCTGCTGGATCCCAAGTAATG	0.657													25	59					0	0	0.004656	0	0
EIF4G1	1981	broad.mit.edu	37	3	184035526	184035526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:184035526C>T	uc003fnp.2	+	6	544	c.346C>T	c.(346-348)CCG>TCG	p.P116S	EIF4G1_uc003fno.1_Missense_Mutation_p.P57S|EIF4G1_uc010hxw.1_Intron|EIF4G1_uc003fnt.2_5'UTR|EIF4G1_uc003fnq.2_Missense_Mutation_p.P29S|EIF4G1_uc003fnr.2_5'UTR|EIF4G1_uc010hxx.2_Missense_Mutation_p.P123S|EIF4G1_uc003fns.2_Missense_Mutation_p.P76S|EIF4G1_uc010hxy.2_Missense_Mutation_p.P123S|EIF4G1_uc010hxz.1_Missense_Mutation_p.P29S|EIF4G1_uc003fnv.3_Missense_Mutation_p.P116S|EIF4G1_uc003fnu.3_Missense_Mutation_p.P116S|EIF4G1_uc003fnw.2_Missense_Mutation_p.P123S|EIF4G1_uc003fnx.2_5'Flank|EIF4G1_uc003fny.3_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	116					insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ATACGTTGTCCCGACACAGCA	0.557													5	37					0	0	0.000602	0	0
CLCN2	1181	broad.mit.edu	37	3	184075882	184075882	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:184075882G>A	uc003foi.2	-	5	607	c.483C>T	c.(481-483)GGC>GGT	p.G161G	CLCN2_uc003foh.2_5'Flank|CLCN2_uc010hya.1_Silent_p.G161G|CLCN2_uc011brl.1_Silent_p.G161G|CLCN2_uc011brm.1_Silent_p.G117G|CLCN2_uc011brn.1_Silent_p.G161G	NM_004366	NP_004357	P51788	CLCN2_HUMAN	chloride channel 2	161	Selectivity filter part_1 (By similarity).					chloride channel complex	voltage-gated chloride channel activity				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;2.22e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Lubiprostone(DB01046)	GGATGCCAGAGCCTGGAGAGG	0.552													28	66					0	0	0.001512	0	0
THPO	7066	broad.mit.edu	37	3	184091368	184091368	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:184091368C>T	uc003fol.1	-	5	446	c.231G>A	c.(229-231)GAG>GAA	p.E77E	THPO_uc003fom.1_Silent_p.E77E|THPO_uc003fon.2_Silent_p.E77E|THPO_uc011bro.1_Silent_p.E77E|THPO_uc003fop.2_Silent_p.E77E|THPO_uc011brp.1_Silent_p.E77E|THPO_uc011brq.1_Silent_p.E77E|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA|THPO_uc003fot.1_Silent_p.E77E|THPO_uc003fou.1_Silent_p.E77E	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	77					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCTTGGTCTCCTCCTGAGAAA	0.547													3	15					0	0	0.004672	0	0
EPHB3	2049	broad.mit.edu	37	3	184295720	184295720	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:184295720C>T	uc003foz.2	+	8	2111	c.1674C>T	c.(1672-1674)CCC>CCT	p.P558P		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	558	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGCAGCTTCCCCTCATCGTGG	0.642													19	40					0	0	0.001216	0	0
MAP3K13	9175	broad.mit.edu	37	3	185190873	185190873	+	Missense_Mutation	SNP	G	A	A	rs144909413		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:185190873G>A	uc010hyf.2	+	12	2020	c.1754G>A	c.(1753-1755)CGA>CAA	p.R585Q	MAP3K13_uc011brt.1_Missense_Mutation_p.R378Q|MAP3K13_uc011bru.1_Missense_Mutation_p.R441Q|MAP3K13_uc003fpi.2_Missense_Mutation_p.R585Q|MAP3K13_uc010hyg.2_Missense_Mutation_p.R275Q	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	585					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGCCGATATCGAAGCAAACCA	0.542													58	167					0	0	0.003610	0	0
SENP2	59343	broad.mit.edu	37	3	185316753	185316753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:185316753C>T	uc003fpn.2	+	4	470	c.299C>T	c.(298-300)TCG>TTG	p.S100L	SENP2_uc011brv.1_Missense_Mutation_p.S90L|SENP2_uc011brw.1_Intron	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	100					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			AAGGTATTTTCGAACTCTTCA	0.363													193	167					0	0	0.003610	0	0
SENP2	59343	broad.mit.edu	37	3	185337194	185337194	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:185337194T>C	uc003fpn.2	+	13	1521	c.1350T>C	c.(1348-1350)GGT>GGC	p.G450G	SENP2_uc011brv.1_Silent_p.G440G|SENP2_uc011brw.1_Silent_p.G263G	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	450	Protease.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			AGTCTGGGGGTTACCAAGCAG	0.393													277	250					0	0	0.003610	0	0
HRG	3273	broad.mit.edu	37	3	186383882	186383882	+	Missense_Mutation	SNP	C	T	T	rs141595547	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:186383882C>T	uc003fqq.2	+	1	85	c.62C>T	c.(61-63)CCC>CTC	p.P21L		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	21	Cystatin 1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		GCCGTGAGTCCCACTGACTGC	0.493													24	44					0	0	0.003330	0	0
CCDC50	152137	broad.mit.edu	37	3	191075887	191075887	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:191075887C>T	uc003fsw.2	+	3	803	c.213C>T	c.(211-213)GCC>GCT	p.A71A	CCDC50_uc003fsv.2_Silent_p.A71A	NM_174908	NP_777568	Q8IVM0	CCD50_HUMAN	Ymer protein short isoform	71	Potential.					cytoplasm	protein binding				0	all_cancers(143;8.88e-09)|Ovarian(172;0.103)|Breast(254;0.221)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000136)		AAGCGCAGGCCCAGCTCCAGA	0.552													51	45					0	0	0.003610	0	0
ATP13A5	344905	broad.mit.edu	37	3	193042758	193042758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:193042758C>T	uc011bsq.1	-	14	1569	c.1569G>A	c.(1567-1569)TGG>TGA	p.W523*		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	523					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ACAGTGGGCTCCATGGCACAG	0.522													36	67					0	0	0.002836	0	0
ATP13A3	79572	broad.mit.edu	37	3	194169326	194169326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:194169326G>A	uc003fty.3	-	11	1412	c.1010C>T	c.(1009-1011)CCT>CTT	p.P337L	ATP13A3_uc003ftz.1_Missense_Mutation_p.P43L	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	337					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		ATCCACTGAAGGATTTGGCAA	0.333													13	34					0	0	0.004007	0	0
ACAP2	23527	broad.mit.edu	37	3	195063202	195063202	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:195063202G>A	uc003fun.3	-	6	767	c.526C>T	c.(526-528)CAG>TAG	p.Q176*	ACAP2_uc003fuo.2_Nonsense_Mutation_p.Q176*	NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	176	BAR.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CTATATACCTGAAGCACATAA	0.368													12	41					0	0	0.001368	0	0
OSTalpha	200931	broad.mit.edu	37	3	195944803	195944803	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:195944803G>A	uc003fwd.2	+	2	330	c.129G>A	c.(127-129)CTG>CTA	p.L43L	OSTalpha_uc011btu.1_Silent_p.L43L	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	43						integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		CCCAACTCCTGAGAGGTGAGT	0.617													4	14					0	0	0.000248	0	0
ZNF595	152687	broad.mit.edu	37	4	60001	60001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:60001G>A	uc003fzv.1	+	3	337	c.181G>A	c.(181-183)GAG>AAG	p.E61K	ZNF595_uc003fzu.1_RNA|ZNF718_uc003fzt.3_Missense_Mutation_p.E61K|ZNF595_uc010iay.1_RNA|ZNF595_uc011bus.1_Intron|ZNF595_uc011but.1_Intron	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	61					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		GCAAATAAAAGAGCCCTGCAA	0.448													7	124					0	0	0.003080	0	0
GAK	2580	broad.mit.edu	37	4	860902	860902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:860902G>A	uc003gbm.3	-	21	2913	c.2714C>T	c.(2713-2715)TCC>TTC	p.S905F	GAK_uc003gbn.3_Missense_Mutation_p.S826F|GAK_uc010ibk.1_Missense_Mutation_p.S799F|GAK_uc010ibi.2_Missense_Mutation_p.S86F|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.S769F	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	905					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GGTGTTGCTGGAGGGGGCCTT	0.721													6	8					0	0	0.003080	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2306454	2306454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:2306454G>A	uc003gex.1	-	8	1932	c.1613C>T	c.(1612-1614)TCG>TTG	p.S538L	ZFYVE28_uc011bvk.1_Missense_Mutation_p.S468L|ZFYVE28_uc011bvl.1_Missense_Mutation_p.S508L|ZFYVE28_uc003gew.1_Missense_Mutation_p.S424L	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	538					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						CACGGGCTCCGAGGCGGCCTC	0.672													8	21					0	0	0.003080	0	0
RGS12	6002	broad.mit.edu	37	4	3319347	3319348	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:3319347_3319348CC>TT	uc003ggw.2	+	2	2354_2355	c.1450_1451CC>TT	c.(1450-1452)CCC>TTC	p.P484F	RGS12_uc003ggu.2_Missense_Mutation_p.P484F|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.P484F|RGS12_uc003ggx.1_Missense_Mutation_p.P484F	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	484						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGAAGGGAGCCCCCCATTTGAG	0.683													23	34					0	0	0.004672	0	0
RGS12	6002	broad.mit.edu	37	4	3319756	3319756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:3319756G>A	uc003ggw.2	+	2	2763	c.1859G>A	c.(1858-1860)CGA>CAA	p.R620Q	RGS12_uc003ggu.2_Missense_Mutation_p.R620Q|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.R620Q|RGS12_uc003ggx.1_Missense_Mutation_p.R620Q	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	620						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CGAAATGTTCGAAAGACTAAG	0.582													28	52					0	0	0.006320	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6042423	6042423	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:6042423C>T	uc010idb.1	-	18	2604	c.2118G>A	c.(2116-2118)AAG>AAA	p.K706K	JAKMIP1_uc010idc.1_Silent_p.K521K|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CCAGGTAGCCCTTCTGCCTGC	0.557													6	11					0	0	0.003080	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6380203	6380203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:6380203C>T	uc003gjc.2	-	3	635	c.265G>A	c.(265-267)GAG>AAG	p.E89K	PPP2R2C_uc003gjb.2_Missense_Mutation_p.E72K|PPP2R2C_uc011bwd.1_Missense_Mutation_p.E82K|PPP2R2C_uc011bwe.1_Missense_Mutation_p.E82K|PPP2R2C_uc003gja.2_Missense_Mutation_p.E89K|PPP2R2C_uc003gjd.1_Missense_Mutation_p.E177K	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	89	WD 2.				signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						ATCTTCTCCTCTATCTCCAGG	0.582													21	41					0	0	0.001523	0	0
PSAPL1	768239	broad.mit.edu	37	4	7436274	7436274	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:7436274C>T	uc011bwj.1	-	1	427	c.333G>A	c.(331-333)GTG>GTA	p.V111V	SORCS2_uc003gkb.3_Intron|SORCS2_uc011bwi.1_Intron	NM_001085382	NP_001078851	Q6NUJ1	SAPL1_HUMAN	prosaposin-like protein 1	111	Saposin B-type 1.				sphingolipid metabolic process	extracellular region|lysosome					0						TGTGGGCATCCACCATCCACT	0.632													7	7					0	0	0.003080	0	0
GPR78	27201	broad.mit.edu	37	4	8588793	8588793	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:8588793C>T	uc003glk.2	+	3	1214	c.795C>T	c.(793-795)CTC>CTT	p.L265L	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	265	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						TGGCGGAGCTCGTGCCCTTCG	0.612													6	8					0	0	0.001168	0	0
CPZ	8532	broad.mit.edu	37	4	8609090	8609090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:8609090C>T	uc003glm.2	+	7	1291	c.1165C>T	c.(1165-1167)CCC>TCC	p.P389S	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.P252S|CPZ_uc003glo.2_Missense_Mutation_p.P378S|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	389					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GGTGTCCTACCCCTTCGACTT	0.602											OREG0016100	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	14					0	0	0.004482	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447216	10447216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:10447216G>A	uc003gmn.2	-	3	1224	c.737C>T	c.(736-738)TCC>TTC	p.S246F		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	246					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						CCGTGGATTGGAAGCTTTTAG	0.433													54	78					0	0	0.003610	0	0
LDB2	9079	broad.mit.edu	37	4	16590354	16590354	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:16590354C>T	uc003goz.2	-	4	826	c.510G>A	c.(508-510)CCG>CCA	p.P170P	LDB2_uc003gpa.2_Silent_p.P170P|LDB2_uc003gpb.2_Silent_p.P170P|LDB2_uc011bxh.1_Silent_p.P170P|LDB2_uc010iee.2_Silent_p.P170P|LDB2_uc003goy.2_Silent_p.P46P|LDB2_uc011bxi.1_Silent_p.P46P	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	170							LIM domain binding|transcription cofactor activity				0						GGATGCTTCTCGGGACTAACT	0.388													19	27					0	0	0.001882	0	0
GPR125	166647	broad.mit.edu	37	4	22414874	22414874	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:22414874A>G	uc003gqm.1	-	14	2428	c.2163T>C	c.(2161-2163)CAT>CAC	p.H721H	GPR125_uc010ieo.1_Silent_p.H577H	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	721	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				AATAGAGTATATGGCACCCAT	0.438													35	71					0	0	0.004289	0	0
GPR125	166647	broad.mit.edu	37	4	22422588	22422588	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:22422588C>A	uc003gqm.1	-	12	1995	c.1730G>T	c.(1729-1731)CGG>CTG	p.R577L	GPR125_uc010ieo.1_Missense_Mutation_p.R451L|GPR125_uc003gqn.1_Missense_Mutation_p.R351L|GPR125_uc003gqo.2_Missense_Mutation_p.R577L	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	577	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				CTCTGGATCCCGCCTCCCATA	0.468													7	226					0.000157383	0.000226799	0.003080	1	0
STIM2	57620	broad.mit.edu	37	4	27019467	27019467	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:27019467C>G	uc003gsh.3	+	12	2125	c.1909C>G	c.(1909-1911)CGG>GGG	p.R637G	STIM2_uc003gsg.3_Missense_Mutation_p.R629G|STIM2_uc010iex.2_Missense_Mutation_p.R629G|STIM2_uc010iey.2_Missense_Mutation_p.R253G	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	542	Cytoplasmic (Potential).|His/Pro-rich.				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				GTCACACCCTCGGCACCCTCA	0.607													56	73					0	0	0.003610	0	0
ARAP2	116984	broad.mit.edu	37	4	36075412	36075412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:36075412C>T	uc003gsq.1	-	32	4980	c.4642G>A	c.(4642-4644)GAA>AAA	p.E1548K	ARAP2_uc003gso.2_RNA	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1548					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CGTTTTCGTTCCTTTCCAGCT	0.398													26	28					0	0	0.005443	0	0
TMEM156	80008	broad.mit.edu	37	4	38995437	38995437	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:38995437C>T	uc003gto.2	-	3	648	c.540G>A	c.(538-540)TCG>TCA	p.S180S	TMEM156_uc010ifj.2_Silent_p.S180S	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	180	Extracellular (Potential).					integral to membrane				skin(1)	1						TGTAGTTTATCGATTTCTCCT	0.368													29	45					0	0	0.007291	0	0
N4BP2	55728	broad.mit.edu	37	4	40098995	40098995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:40098995C>T	uc003guy.3	+	3	373	c.35C>T	c.(34-36)CCT>CTT	p.P12L	N4BP2_uc010ifq.2_5'UTR	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	12						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GGGGGAAATCCTTTTCGGAAG	0.403													27	55					0	0	0.003271	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351431	40351431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:40351431G>A	uc003gva.1	+	4	914	c.898G>A	c.(898-900)GGT>AGT	p.G300S		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	300					elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GCCCCTGATAGGTGAGTCCAA	0.488													29	38					0	0	0.003271	0	0
RBM47	54502	broad.mit.edu	37	4	40440485	40440485	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:40440485G>A	uc003gvc.2	-	4	1136	c.426C>T	c.(424-426)CTC>CTT	p.L142L	RBM47_uc003gvd.2_Silent_p.L142L|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.L104L|RBM47_uc003gvg.1_Silent_p.L142L	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	142	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						AGCACACGCCGAGCAGGCGGC	0.627													14	24					0	0	0.003163	0	0
GRXCR1	389207	broad.mit.edu	37	4	43032468	43032468	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:43032468C>T	uc003gwt.2	+	4	784	c.784C>T	c.(784-786)CGA>TGA	p.R262*		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	262					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GTCCATGTTTCGAAACTGCTT	0.473													47	55					0	0	0.003610	0	0
GABRA2	2555	broad.mit.edu	37	4	46252554	46252555	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:46252554_46252555GG>AA	uc003gxc.3	-	9	1799_1800	c.1126_1127CC>TT	c.(1126-1128)CCG>TTG	p.P376L	GABRA2_uc010igc.2_Missense_Mutation_p.P376L|GABRA2_uc011bzc.1_Missense_Mutation_p.P381L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	376	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGAAAGATTCGGGGCATAATTG	0.421													28	64					0	0	0.004672	0	0
TXK	7294	broad.mit.edu	37	4	48081967	48081967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:48081967C>T	uc003gxx.3	-	11	1221	c.1135G>A	c.(1135-1137)GAA>AAA	p.E379K	TXK_uc010igj.2_RNA|TXK_uc011bzj.1_Missense_Mutation_p.E66K	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	379	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						TCCAGATATTCCATTCCTTCA	0.373													35	57					0	0	0.006999	0	0
FRYL	285527	broad.mit.edu	37	4	48552675	48552675	+	Silent	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:48552675G>T	uc003gyh.1	-	38	5172	c.4567C>A	c.(4567-4569)CGG>AGG	p.R1523R	FRYL_uc003gyk.2_Silent_p.R1523R|FRYL_uc003gyg.1_Silent_p.R219R|FRYL_uc003gyi.1_Silent_p.R412R	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1523					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TGATGTTGCCGATTCAAATGA	0.363													31	39					1.90571e-15	2.77605e-15	0.004289	1	0
FRYL	285527	broad.mit.edu	37	4	48563556	48563556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:48563556G>A	uc003gyh.1	-	33	4399	c.3794C>T	c.(3793-3795)TCT>TTT	p.S1265F	FRYL_uc003gyk.2_Missense_Mutation_p.S1265F|FRYL_uc003gyi.1_Missense_Mutation_p.S154F	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1265					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ATATGAAACAGAATAGAGATG	0.438													21	19					0	0	0.001523	0	0
FRYL	285527	broad.mit.edu	37	4	48581195	48581196	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:48581195_48581196GA>AT	uc003gyh.1	-	23	2927_2928	c.2322_2323TC>AT	c.(2320-2325)TCTCCT>TCATCT	p.P775S	FRYL_uc003gyk.2_Missense_Mutation_p.P775S	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	775					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TGGCTAATAGGAGAAGAGTTCC	0.376													5	26					0	0	0.004672	0	0
FIP1L1	81608	broad.mit.edu	37	4	54294293	54294293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:54294293C>T	uc003gzy.2	+	13	1303	c.1117C>T	c.(1117-1119)CCA>TCA	p.P373S	PDGFRA_uc003haa.2_Intron|FIP1L1_uc003gzx.3_Missense_Mutation_p.P358S|FIP1L1_uc011bzt.1_Missense_Mutation_p.P337S|FIP1L1_uc011bzu.1_Missense_Mutation_p.P358S|FIP1L1_uc003gzz.2_Missense_Mutation_p.P299S|FIP1L1_uc003hab.2_Missense_Mutation_p.P338S|FIP1L1_uc003hac.2_Missense_Mutation_p.P118S|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_5'UTR|FIP1L1_uc003hae.2_5'UTR	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	373	Pro-rich.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			tccacctcctccatttcttcc	0.328			T	PDGFRA	idiopathic hypereosinophilic syndrome								18	12					0	0	0.007413	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139855	55139855	+	Missense_Mutation	SNP	C	T	T	rs142980928		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:55139855C>T	uc003han.3	+	10	1847	c.1516C>T	c.(1516-1518)CTC>TTC	p.L506F	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.L400F|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	506	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GGCTAAGAATCTCCTTGGAGC	0.592			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			21	33					0	0	0.003330	0	0
PDCL2	132954	broad.mit.edu	37	4	56448404	56448404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:56448404C>T	uc003hbb.2	-	2	110	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_152401	NP_689614	Q8N4E4	PDCL2_HUMAN	phosducin-like 2	3											0	Lung NSC(11;0.00256)|Glioma(25;0.08)|all_epithelial(27;0.0863)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.69e-07)|Lung(4;1.03e-06)|Epithelial(7;0.00669)			TCATTGGGATCCTACACAAAA	0.303													11	28					0	0	0.001855	0	0
EXOC1	55763	broad.mit.edu	37	4	56768600	56768600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:56768600C>T	uc003hbe.1	+	18	2586	c.2428C>T	c.(2428-2430)CGT>TGT	p.R810C	EXOC1_uc003hbf.1_Missense_Mutation_p.R810C|EXOC1_uc003hbg.1_Missense_Mutation_p.R795C	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	810					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					ACAAGAACTTCGTAAAGTCAT	0.383													18	32					0	0	0.001216	0	0
KIAA1211	57482	broad.mit.edu	37	4	57164435	57164435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:57164435C>T	uc003hbk.2	+	4	431	c.40C>T	c.(40-42)CCT>TCT	p.P14S	KIAA1211_uc010iha.2_5'UTR	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	14										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					TATTTTTATCCCTGATGGGGG	0.428													11	21					0	0	0.000673	0	0
AASDH	132949	broad.mit.edu	37	4	57204882	57204882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:57204882C>T	uc003hbn.2	-	15	3136	c.2983G>A	c.(2983-2985)GGT>AGT	p.G995S	AASDH_uc010ihb.2_Missense_Mutation_p.G510S|AASDH_uc011caa.1_Nonsense_Mutation_p.W787*|AASDH_uc003hbo.2_Missense_Mutation_p.G895S|AASDH_uc011cab.1_Missense_Mutation_p.G510S|AASDH_uc010ihc.2_Nonsense_Mutation_p.W855*	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	995					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				TCATGGGAACCAAAAAATATT	0.378													17	18					0	0	0.004007	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68930472	68930472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:68930472C>T	uc003hdt.1	-	8	995	c.946G>A	c.(946-948)GAC>AAC	p.D316N	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron|SYT14L_uc010ihn.2_5'Flank	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	316	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATAGATGAGTCTGGGAGGCAA	0.388													14	22					0	0	0.004007	0	0
UGT2B10	7365	broad.mit.edu	37	4	69693259	69693259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:69693259G>A	uc003hee.2	+	5	1325	c.1300G>A	c.(1300-1302)GAT>AAT	p.D434N	UGT2B10_uc011cam.1_Missense_Mutation_p.D350N	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	434					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						AGTAATTAATGATCCTTCGTG	0.383													24	49					0	0	0.001786	0	0
UGT2B10	7365	broad.mit.edu	37	4	69696515	69696515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:69696515C>T	uc003hee.2	+	6	1530	c.1505C>T	c.(1504-1506)ACC>ATC	p.T502I	UGT2B10_uc011cam.1_Missense_Mutation_p.T418I	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	502	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGTGTGGCAACCGTGCTATTT	0.433													39	57					0	0	0.004289	0	0
UGT2A3	79799	broad.mit.edu	37	4	69816930	69816930	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:69816930C>T	uc003hef.2	-	1	580	c.549G>A	c.(547-549)GGG>GGA	p.G183G	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	183	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CTGGAAGTTTCCCACAGCTTC	0.448													8	11					0	0	0.004482	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146930	70146930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:70146930G>A	uc003hej.2	+	1	714	c.712G>A	c.(712-714)GAA>AAA	p.E238K	UGT2B28_uc010ihr.2_Missense_Mutation_p.E238K	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	238					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GTTTTACAGTGAAGTTTTAGG	0.343													21	43					0	0	0.003330	0	0
SULT1B1	27284	broad.mit.edu	37	4	70599185	70599185	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:70599185C>T	uc003hen.2	-	6	841	c.543G>A	c.(541-543)TGG>TGA	p.W181*		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	181					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						CCTTTTTCTTCCACCAGTTTT	0.323													32	63					0	0	0.002096	0	0
SULT1E1	6783	broad.mit.edu	37	4	70719950	70719950	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:70719950C>T	uc003heo.2	-	4	467	c.354G>A	c.(352-354)TGG>TGA	p.W118*	SULT1E1_uc010ihv.1_Nonsense_Mutation_p.W118*	NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	118					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						AATCCTTTTCCCAAAATGAGG	0.343													10	24					0	0	0.006214	0	0
CSN2	1447	broad.mit.edu	37	4	70823295	70823296	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:70823295_70823296GG>AA	uc003hes.3	-	5	384_385	c.371_372CC>TT	c.(370-372)CCC>CTT	p.P124L	CSN2_uc003het.3_Missense_Mutation_p.P123L	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	124					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						GGTCAAAAAAGGGTATCGTTGG	0.48													17	35					0	0	0.004672	0	0
SMR3A	26952	broad.mit.edu	37	4	71232489	71232489	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:71232489G>A	uc003hfg.1	+	3	264	c.183G>A	c.(181-183)GGG>GGA	p.G61G	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	61	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				ATGGTCCAGGGAGATTTCCAC	0.547													34	58					0	0	0.002445	0	0
SMR3A	26952	broad.mit.edu	37	4	71232589	71232589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:71232589C>T	uc003hfg.1	+	3	364	c.283C>T	c.(283-285)CCT>TCT	p.P95S	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	95	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				ACACTCTCTTCCTCCTCCTTA	0.532													23	39					0	0	0.006320	0	0
PROL1	58503	broad.mit.edu	37	4	71275199	71275199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:71275199C>T	uc003hfi.2	+	3	328	c.154C>T	c.(154-156)CCC>TCC	p.P52S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	52	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TCCCCCACCTCCCTATGACTC	0.502													34	41					0	0	0.003755	0	0
MUC7	4589	broad.mit.edu	37	4	71347503	71347503	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:71347503A>G	uc011cat.1	+	4	1330	c.1042A>G	c.(1042-1044)ACT>GCT	p.T348A	MUC7_uc011cau.1_Missense_Mutation_p.T348A|MUC7_uc003hfj.2_Missense_Mutation_p.T348A|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	348	Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			TAAACAACCAACTTCAGCTCC	0.388													26	33					0	0	0.003954	0	0
ENAM	10117	broad.mit.edu	37	4	71508720	71508720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:71508720G>A	uc011caw.1	+	9	1858	c.1577G>A	c.(1576-1578)AGG>AAG	p.R526K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	526					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			GGGTCAAGAAGGATGCCATAT	0.418													34	30					0	0	0.002445	0	0
GC	2638	broad.mit.edu	37	4	72635106	72635106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:72635106C>T	uc003hge.2	-	2	223	c.70G>A	c.(70-72)GAA>AAA	p.E24K	GC_uc003hgd.2_5'UTR|GC_uc010iie.2_Missense_Mutation_p.E24K|GC_uc010iif.2_Missense_Mutation_p.E43K	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	24	Albumin 1.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	TTATTCTTTTCATAATCCCGG	0.408													7	11					0	0	0.006214	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013235	73013235	+	Silent	SNP	C	T	T	rs145038184	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:73013235C>T	uc003hgg.2	+	4	1373	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	NPFFR2_uc010iig.1_Silent_p.F207F|NPFFR2_uc003hgi.2_Silent_p.F326F|NPFFR2_uc003hgh.2_Silent_p.F323F|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	425	Helical; Name=7; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GGCTGGCATTCGGCAACAGCA	0.463													32	35					0	0	0.003271	0	0
ANKRD17	26057	broad.mit.edu	37	4	73987397	73987397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:73987397G>A	uc003hgp.2	-	19	3689	c.3572C>T	c.(3571-3573)GCT>GTT	p.A1191V	ANKRD17_uc003hgo.2_Missense_Mutation_p.A1078V|ANKRD17_uc003hgq.2_Missense_Mutation_p.A940V|ANKRD17_uc003hgr.2_Missense_Mutation_p.A1190V|ANKRD17_uc011cbd.1_Missense_Mutation_p.A756V	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1191	ANK 19.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GCCACCAGAAGCAGCCAGACT	0.393													12	39					0	0	0.001368	0	0
AFM	173	broad.mit.edu	37	4	74367531	74367531	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:74367531G>A	uc003hhb.2	+	13	1705	c.1674G>A	c.(1672-1674)AAG>AAA	p.K558K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	558	Albumin 3.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGAAGCTGAAGCATGAACTCA	0.388													4	9					0	0	0.000248	0	0
CCDC158	339965	broad.mit.edu	37	4	77292590	77292590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:77292590C>T	uc003hkb.3	-	9	1282	c.1129G>A	c.(1129-1131)GAT>AAT	p.D377N		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	377	Potential.									skin(3)|ovary(2)|pancreas(1)	6						TGAAGTTGATCATCTAAATTT	0.378													5	14					0	0	0.001984	0	0
GK2	2712	broad.mit.edu	37	4	80327831	80327831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:80327831C>T	uc003hlu.2	-	1	1542	c.1524G>A	c.(1522-1524)ATG>ATA	p.M508I		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	508					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CCATTGACTTCATTACGGCTT	0.448													24	45					0	0	0.007291	0	0
BMP3	651	broad.mit.edu	37	4	81967643	81967643	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:81967643G>A	uc003hmg.3	+	2	1388	c.1068G>A	c.(1066-1068)CTG>CTA	p.L356L		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	356					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						AGCAGACCCTGAAAAAGGCAA	0.478													15	24					0	0	0.002450	0	0
HPSE	10855	broad.mit.edu	37	4	84243433	84243433	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:84243433G>A	uc003hoj.3	-	2	411	c.312C>T	c.(310-312)TTC>TTT	p.F104F	HPSE_uc010ika.2_Silent_p.F104F|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_5'UTR|HPSE_uc011cct.1_Silent_p.F104F|HPSE_uc003hok.3_Silent_p.F104F	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	104					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	TCTTGGGATCGAAAATTAGGA	0.418													6	23					0	0	0.001168	0	0
WDFY3	23001	broad.mit.edu	37	4	85617242	85617242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:85617242C>T	uc003hpd.2	-	58	9190	c.8782G>A	c.(8782-8784)GTA>ATA	p.V2928I	WDFY3_uc003hpe.1_Missense_Mutation_p.V539I	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2928	BEACH.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AAGACATTTACAGCTTCTACT	0.408													24	44					0	0	0.003954	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86491674	86491674	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:86491674G>A	uc003hpk.2	+	2	430	c.-19_splice	c.e2-1		ARHGAP24_uc003hpi.1_Splice_Site|ARHGAP24_uc003hpj.2_Splice_Site	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1						angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		TTGCTAACTAGGAAAGTCCAT	0.403													4	8					0	0	0.000248	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86916612	86916612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:86916612C>T	uc003hpk.2	+	9	2254	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	ARHGAP24_uc003hpl.2_Missense_Mutation_p.S507F|ARHGAP24_uc010ikf.2_Missense_Mutation_p.S517F|ARHGAP24_uc003hpm.2_Missense_Mutation_p.S509F	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	602					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GACGACCTTTCCCACCCCAGG	0.552													19	29					0	0	0.007413	0	0
MAPK10	5602	broad.mit.edu	37	4	86988960	86988960	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:86988960G>A	uc003hpq.2	-	9	1018	c.951C>T	c.(949-951)CTC>CTT	p.L317L	MAPK10_uc010ikg.2_Silent_p.L279L|MAPK10_uc003hpr.2_Silent_p.L279L|MAPK10_uc003hps.2_Silent_p.L317L|MAPK10_uc003hpt.2_Silent_p.L317L|MAPK10_uc003hpu.2_Silent_p.L317L|MAPK10_uc003hpv.2_Silent_p.L172L|MAPK10_uc003hpn.2_Silent_p.L65L|MAPK10_uc003hpo.2_Silent_p.L172L|MAPK10_uc011ccw.1_Silent_p.L203L|MAPK10_uc003hpp.2_Silent_p.L172L	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	317	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		CCGCTGGGAAGAGGGAATCTG	0.483													9	17					0	0	0.006214	0	0
PTPN13	5783	broad.mit.edu	37	4	87691040	87691040	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:87691040C>T	uc003hpz.2	+	29	5088	c.4608C>T	c.(4606-4608)CTC>CTT	p.L1536L	PTPN13_uc003hpy.2_Silent_p.L1541L|PTPN13_uc003hqa.2_Silent_p.L1517L|PTPN13_uc003hqb.2_Silent_p.L1345L|PTPN13_uc003hqc.1_5'UTR	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1536	PDZ 3.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TTAAAAAGCTCTTTCCTGGAC	0.383													38	20					0	0	0.006999	0	0
PDHA2	5161	broad.mit.edu	37	4	96761999	96761999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:96761999G>A	uc003htr.3	+	1	761	c.698G>A	c.(697-699)AGA>AAA	p.R233K		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	233					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TCTACTGAGAGAGCAGCAGCC	0.438													26	6					0	0	0.004656	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99300270	99300270	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:99300270T>C	uc003htx.3	+	5	654	c.464T>C	c.(463-465)TTG>TCG	p.L155S	RAP1GDS1_uc003htu.2_Missense_Mutation_p.L155S|RAP1GDS1_uc003htw.3_Missense_Mutation_p.L156S|RAP1GDS1_uc003htv.3_Missense_Mutation_p.L156S|RAP1GDS1_uc003htz.3_Intron|RAP1GDS1_uc003hty.3_Intron|RAP1GDS1_uc003hua.3_Intron	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	155							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		GAGAAGCTCTTGACTGTCTTT	0.403			T	NUP98	T-ALL								33	26					0	0	0.007835	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99363184	99363184	+	Silent	SNP	C	T	T	rs56262026	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:99363184C>T	uc003htx.3	+	15	1930	c.1740C>T	c.(1738-1740)GTC>GTT	p.V580V	RAP1GDS1_uc003htw.3_Silent_p.V581V|RAP1GDS1_uc003htv.3_Silent_p.V580V|RAP1GDS1_uc003htz.3_Silent_p.V531V|RAP1GDS1_uc003hty.3_Silent_p.V532V|RAP1GDS1_uc003hua.3_Silent_p.V489V	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	580							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		TTCTAGATGTCGTATCCAAAC	0.423			T	NUP98	T-ALL								6	8					0	0	0.001984	0	0
ADH4	127	broad.mit.edu	37	4	100063856	100063856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:100063856G>A	uc003hun.2	-	2	170	c.94C>T	c.(94-96)CCC>TCC	p.P32S	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.P51S	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	32					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	TGAGCCTTGGGGGGAGCTACT	0.507													14	10					0	0	0.004990	0	0
CENPE	1062	broad.mit.edu	37	4	104029962	104029962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:104029962G>A	uc003hxb.1	-	48	8099	c.8009C>T	c.(8008-8010)CCA>CTA	p.P2670L	CENPE_uc003hxc.1_Missense_Mutation_p.P2549L	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2670	Globular autoinhibitory domain (By similarity).				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTACTTACCTGGACAAAGGCC	0.358													5	5					0	0	0.000602	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109675807	109675807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:109675807C>T	uc003hzc.2	-	5	651	c.470G>A	c.(469-471)GGA>GAA	p.G157E	AGXT2L1_uc010imc.2_Missense_Mutation_p.G151E|AGXT2L1_uc011cfm.1_Missense_Mutation_p.G117E|AGXT2L1_uc011cfn.1_Missense_Mutation_p.G84E|AGXT2L1_uc011cfo.1_Missense_Mutation_p.G99E	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	157					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		GACATCTTTTCCTTTCTGAAA	0.229													19	11					0	0	0.001882	0	0
COL25A1	84570	broad.mit.edu	37	4	109745366	109745367	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:109745366_109745367CC>TT	uc003hze.1	-	34	2339_2340	c.1808_1809GG>AA	c.(1807-1809)CGG>CAA	p.R603Q	COL25A1_uc003hzg.2_Missense_Mutation_p.R603Q|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.R391Q	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	603	Extracellular (Potential).|Collagen-like 7.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CCTTCTCACCCCGTGGACCAGG	0.411													17	9					0	0	0.004672	0	0
COL25A1	84570	broad.mit.edu	37	4	110223081	110223081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:110223081G>A	uc003hze.1	-	2	626	c.95C>T	c.(94-96)CCC>CTC	p.P32L	COL25A1_uc003hzg.2_Missense_Mutation_p.P32L|COL25A1_uc003hzh.1_Missense_Mutation_p.P32L	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	32	Cytoplasmic (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		GGCACACGGGGGCATGGTCCG	0.667													18	5					0	0	0.006122	0	0
LRIT3	345193	broad.mit.edu	37	4	110791254	110791254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:110791254G>A	uc003hzx.3	+	3	1407	c.1214G>A	c.(1213-1215)AGA>AAA	p.R405K	LRIT3_uc003hzw.3_Missense_Mutation_p.R267K	NM_198506	NP_940908	Q3SXY7	LRIT3_HUMAN	leucine-rich repeat, immunoglobulin-like and	405						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;0.0011)		GGTGGGAAAAGAAATTTAAAG	0.423													19	15					0	0	0.006122	0	0
PRSS12	8492	broad.mit.edu	37	4	119204249	119204249	+	Missense_Mutation	SNP	C	T	T	rs138052286		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:119204249C>T	uc003ica.1	-	12	2104	c.2057G>A	c.(2056-2058)AGG>AAG	p.R686K		NM_003619	NP_003610	P56730	NETR_HUMAN	neurotrypsin precursor	686	Peptidase S1.					membrane	scavenger receptor activity			skin(1)	1						AGCATAGCTCCTAGTGCTGTT	0.413													35	63					0	0	0.004289	0	0
FABP2	2169	broad.mit.edu	37	4	120241921	120241921	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:120241921G>A	uc003icw.2	-	2	203	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2	48							fatty acid binding			ovary(1)	1						CTTTGACTGTGAATTTATTTC	0.358													25	22					0	0	0.003954	0	0
PDE5A	8654	broad.mit.edu	37	4	120419785	120419785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:120419785C>T	uc003idh.2	-	21	2754	c.2599G>A	c.(2599-2601)GGG>AGG	p.G867R	uc003ide.3_Intron|PDE5A_uc003idf.2_Missense_Mutation_p.G825R|PDE5A_uc003idg.2_Missense_Mutation_p.G815R	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	867					platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	CCGCTTTCCCCATTAATCAGC	0.493													21	39					0	0	0.002780	0	0
C4orf31	79625	broad.mit.edu	37	4	121958055	121958055	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:121958055C>T	uc003idq.1	-	4	1598	c.1071G>A	c.(1069-1071)AGG>AGA	p.R357R		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	357											0						TTGCTCCCTTCCTTTTAACAA	0.433													26	42					0	0	0.005443	0	0
C4orf31	79625	broad.mit.edu	37	4	121966872	121966872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:121966872G>A	uc003idq.1	-	2	648	c.121C>T	c.(121-123)CAT>TAT	p.H41Y		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	41											0						GACGAATCATGAAAAAATGCC	0.433													16	34					0	0	0.004990	0	0
TNIP3	79931	broad.mit.edu	37	4	122075770	122075770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:122075770C>T	uc010ing.2	-	5	624	c.428G>A	c.(427-429)GGA>GAA	p.G143E	TNIP3_uc010inh.2_Missense_Mutation_p.G143E|TNIP3_uc011cgj.1_Missense_Mutation_p.G201E|TNIP3_uc010ini.2_Missense_Mutation_p.G143E	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	143	Potential.									ovary(1)	1						AGTATTTTTTCCCTTTAAAAG	0.333													14	23					0	0	0.001855	0	0
BBS7	55212	broad.mit.edu	37	4	122756341	122756341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:122756341G>A	uc003ied.2	-	14	1643	c.1469C>T	c.(1468-1470)CCT>CTT	p.P490L	BBS7_uc003iee.1_Missense_Mutation_p.P490L	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	490					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						GAGTGAAAGAGGTTTGATGTG	0.408									Bardet-Biedl_syndrome				17	20					0	0	0.001523	0	0
TRPC3	7222	broad.mit.edu	37	4	122854187	122854187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:122854187C>T	uc003ieg.2	-	2	300	c.226G>A	c.(226-228)GGA>AGA	p.G76R	TRPC3_uc010inr.2_Missense_Mutation_p.G3R|TRPC3_uc003ief.2_Missense_Mutation_p.G3R|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	Error:Variant_position_missing_in_Q13507_after_alignment					axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GATGGGCTTCCCTCCATGGAC	0.547													12	17					0	0	0.001855	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:123274229C>T	uc003ieh.2	+	79	14065	c.14020C>T	c.(14020-14022)CGT>TGT	p.R4674C	KIAA1109_uc003iem.2_Missense_Mutation_p.R1030C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4674					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCCAAATTTTCGTTCAAAATC	0.368													20	26					0	0	0.001523	0	0
IL21	59067	broad.mit.edu	37	4	123534028	123534028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:123534028C>T	uc003ies.2	-	4	461	c.416G>A	c.(415-417)AGA>AAA	p.R139K	IL21_uc010int.2_Missense_Mutation_p.R132K	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	132					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						TGATTTGAATCTTTCTAGGAA	0.313													7	13					0	0	0.004482	0	0
FAT4	79633	broad.mit.edu	37	4	126389779	126389779	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:126389779G>A	uc003ifj.3	+	11	12012	c.12012G>A	c.(12010-12012)ACG>ACA	p.T4004T	FAT4_uc011cgp.1_Silent_p.T2267T|FAT4_uc003ifi.1_Silent_p.T1482T	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4004	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AATTTGCCACGATTAAAAGTC	0.398													9	23					0	0	0.004482	0	0
FAT4	79633	broad.mit.edu	37	4	126411466	126411466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:126411466G>A	uc003ifj.3	+	17	13489	c.13489G>A	c.(13489-13491)GAG>AAG	p.E4497K	FAT4_uc011cgp.1_Missense_Mutation_p.E2738K|FAT4_uc003ifi.1_Missense_Mutation_p.E1974K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4497	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGGCCCTGAAGAGATCTCTCT	0.602													16	38					0	0	0.006122	0	0
SLC25A31	83447	broad.mit.edu	37	4	128651718	128651718	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:128651718G>A	uc003ifl.2	+	1	164	c.18G>A	c.(16-18)GCG>GCA	p.A6A		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	6					transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GTGAGCCTGCGAAAAAGAAGG	0.552													18	65					0	0	0.007413	0	0
HSPA4L	22824	broad.mit.edu	37	4	128722309	128722309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:128722309C>T	uc003ifm.2	+	5	699	c.446C>T	c.(445-447)ACT>ATT	p.T149I	HSPA4L_uc010iny.1_Missense_Mutation_p.T108I|HSPA4L_uc011cgr.1_Missense_Mutation_p.T116I	NM_014278	NP_055093	O95757	HS74L_HUMAN	heat shock 70kDa protein 4-like	149					protein folding|response to unfolded protein	cytoplasm|nucleus	ATP binding|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						AGCTTTTTTACTGATGCCGAG	0.338													15	40					0	0	0.007413	0	0
SLC7A11	23657	broad.mit.edu	37	4	139153492	139153492	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:139153492A>C	uc011chb.1	-	3	729	c.449T>G	c.(448-450)ATT>AGT	p.I150S		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	150	Extracellular (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	TGGTTCCAGAATGTAGCGTCC	0.368													40	28					0	0	0.002852	0	0
SLC7A11	23657	broad.mit.edu	37	4	139163171	139163171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:139163171C>T	uc011chb.1	-	1	333	c.53G>A	c.(52-54)GGA>GAA	p.G18E		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	18	Cytoplasmic (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	GTTAACATTTCCCTGCAGGTA	0.507													13	27					0	0	0.001368	0	0
MAML3	55534	broad.mit.edu	37	4	140811507	140811508	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:140811507_140811508GG>AA	uc003ihz.1	-	2	1834_1835	c.1082_1083CC>TT	c.(1081-1083)CCC>CTT	p.P361L	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	361					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GAGAGTGAGAGGGGTCGCTCTT	0.554													12	50					0	0	0.004672	0	0
ZNF827	152485	broad.mit.edu	37	4	146686280	146686280	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:146686280C>T	uc003ikn.2	-	13	3138	c.3090G>A	c.(3088-3090)ACG>ACA	p.T1030T	ZNF827_uc003ikm.2_Silent_p.T1030T|ZNF827_uc010iox.2_Silent_p.T680T|ZNF827_uc003ikl.2_Silent_p.T115T	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	1030	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					ACATGTTCTTCGTCTTGCAGA	0.532													11	42					0	0	0.000673	0	0
EDNRA	1909	broad.mit.edu	37	4	148407109	148407109	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:148407109C>T	uc003iky.2	+	2	968	c.276C>T	c.(274-276)ATC>ATT	p.I92I	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Silent_p.I92I|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Silent_p.I92I	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	92	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	CTATTTTCATCGTGGGAATGG	0.443													42	48					0	0	0.003610	0	0
DCLK2	166614	broad.mit.edu	37	4	151023715	151023715	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:151023715C>T	uc003ilm.3	+	2	607	c.507C>T	c.(505-507)ATC>ATT	p.I169I	DCLK2_uc003iln.3_Silent_p.I169I|DCLK2_uc003ilo.3_Silent_p.I169I|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	169					intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					CTGTGAACATCAAGGGTGGGA	0.408													26	13					0	0	0.005443	0	0
LRBA	987	broad.mit.edu	37	4	151271219	151271219	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:151271219G>A	uc010ipj.2	-	49	7794	c.7320C>T	c.(7318-7320)GCC>GCT	p.A2440A	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Silent_p.A330A|LRBA_uc003ilt.3_Silent_p.A1088A|LRBA_uc003ilu.3_Silent_p.A2429A	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2440	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ACACATTGAGGGCTCGGACAG	0.418													27	22					0	0	0.005443	0	0
ARFIP1	27236	broad.mit.edu	37	4	153809445	153809445	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:153809445C>T	uc003imz.2	+	8	1228	c.952C>T	c.(952-954)CTA>TTA	p.L318L	ARFIP1_uc003inb.2_Silent_p.L286L|ARFIP1_uc003ina.2_Silent_p.L286L|ARFIP1_uc003inc.2_Silent_p.L318L|ARFIP1_uc011cij.1_Silent_p.L138L	NM_001025595	NP_001020766	P53367	ARFP1_HUMAN	ADP-ribosylation factor interacting protein 1	318	AH.				intracellular protein transport|regulation of protein secretion	cytosol|Golgi membrane				ovary(1)	1	all_hematologic(180;0.093)					ATTGAAATTTCTAGAAGAAAA	0.348													6	17					0	0	0.001168	0	0
FHDC1	85462	broad.mit.edu	37	4	153897073	153897073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:153897073C>T	uc003inf.2	+	11	2705	c.2630C>T	c.(2629-2631)CCC>CTC	p.P877L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	877					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GCCTCCAAGCCCGGGAGCGCC	0.642													31	53					0	0	0.001512	0	0
RNF175	285533	broad.mit.edu	37	4	154649477	154649477	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:154649477A>T	uc003int.2	-	4	656	c.283T>A	c.(283-285)TAT>AAT	p.Y95N	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	95	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				ATCGTGAAATATAAGGGGACA	0.448													64	46					0	0	0.003610	0	0
SFRP2	6423	broad.mit.edu	37	4	154702787	154702787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:154702787G>A	uc003inv.1	-	3	945	c.704C>T	c.(703-705)TCG>TTG	p.S235L		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	235	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				CCACAGCACCGATTTCTTCAG	0.512													20	56					0	0	0.007413	0	0
DCHS2	54798	broad.mit.edu	37	4	155256132	155256132	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:155256132G>A	uc003inw.2	-	8	1104	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	DCHS2_uc003inx.2_Silent_p.F867F	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	368	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GAGTTGTCTGGAAAATGTGTA	0.443													16	48					0	0	0.004007	0	0
FGA	2243	broad.mit.edu	37	4	155507767	155507767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:155507767C>T	uc003iod.1	-	5	872	c.814G>A	c.(814-816)GGA>AGA	p.G272R	FGA_uc003ioe.1_Missense_Mutation_p.G272R|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	272	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GTGGAGCCTCCTCGAGTAATC	0.542													29	105					0	0	0.006320	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156651255	156651255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:156651255G>A	uc003iov.2	+	11	2481	c.1945G>A	c.(1945-1947)GAA>AAA	p.E649K	GUCY1A3_uc003iow.2_Missense_Mutation_p.E649K|GUCY1A3_uc010iqd.2_Missense_Mutation_p.E648K|GUCY1A3_uc003iox.2_Missense_Mutation_p.E649K|GUCY1A3_uc003ioz.2_Missense_Mutation_p.E414K|GUCY1A3_uc003ioy.2_Missense_Mutation_p.E649K|GUCY1A3_uc010iqe.2_Missense_Mutation_p.E414K|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.E649K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	649					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTTCCCTAGTGAAATCCCCGG	0.403													41	46					0	0	0.002852	0	0
ACCN5	51802	broad.mit.edu	37	4	156784766	156784766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:156784766G>A	uc003ipe.1	-	2	228	c.181C>T	c.(181-183)CGC>TGC	p.R61C		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	61	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		AGCACCCTGCGAATTTTGCTC	0.488													12	22					0	0	0.001855	0	0
CTSO	1519	broad.mit.edu	37	4	156858553	156858553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:156858553G>A	uc003ipg.2	-	5	684	c.635C>T	c.(634-636)TCT>TTT	p.S212F		NM_001334	NP_001325	P43234	CATO_HUMAN	cathepsin O preproprotein	212					proteolysis	lysosome	cysteine-type endopeptidase activity				0	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.05)|Kidney(143;0.0627)|COAD - Colon adenocarcinoma(41;0.148)		TGAAAATCCAGAATGTGAACC	0.294													10	21					0	0	0.000978	0	0
GLRB	2743	broad.mit.edu	37	4	158057999	158057999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:158057999C>T	uc003ipj.2	+	6	773	c.571C>T	c.(571-573)CCC>TCC	p.P191S		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	191	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GACATTGTTTCCCATGGATAC	0.348													20	21					0	0	0.002299	0	0
RXFP1	59350	broad.mit.edu	37	4	159529156	159529156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:159529156C>T	uc003ipz.2	+	6	579	c.497C>T	c.(496-498)TCC>TTC	p.S166F	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Missense_Mutation_p.S85F|RXFP1_uc010iqo.2_Missense_Mutation_p.S166F|RXFP1_uc011cjb.1_Missense_Mutation_p.S112F|RXFP1_uc010iqk.2_Missense_Mutation_p.S34F|RXFP1_uc011cjc.1_Missense_Mutation_p.S85F|RXFP1_uc011cjd.1_Missense_Mutation_p.S85F|RXFP1_uc010iql.2_Missense_Mutation_p.S34F|RXFP1_uc011cje.1_Missense_Mutation_p.S193F|RXFP1_uc010iqm.2_Missense_Mutation_p.S133F|RXFP1_uc011cjf.1_Missense_Mutation_p.S36F|RXFP1_uc010iqn.2_Missense_Mutation_p.S112F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	166	Extracellular (Potential).|LRR 1.					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ACATCCATCTCCATCTATGCT	0.299													13	59					0	0	0.003163	0	0
FNIP2	57600	broad.mit.edu	37	4	159772596	159772596	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:159772596C>A	uc003iqe.3	+	8	1034	c.851C>A	c.(850-852)CCA>CAA	p.P284Q		NM_020840	NP_065891	Q9P278	FNIP2_HUMAN	folliculin interacting protein 2	284					DNA damage response, signal transduction resulting in induction of apoptosis|protein phosphorylation|regulation of protein phosphorylation	cytoplasm	protein binding				0	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.00936)		GGCATCATCCCAAGAAGGTGA	0.493													6	127					0.00116845	0.00167919	0.001168	1	0
NPY5R	4889	broad.mit.edu	37	4	164271428	164271429	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:164271428_164271429GG>AT	uc003iqn.2	+	4	185_186	c.3_4GG>AT	c.(1-6)ATGGAT>ATATAT	p.1_2MD>IY		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	1_2	Extracellular (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				ACTATAATATGGATTTAGAGCT	0.347													13	26					0	0	0.004672	0	0
NPY5R	4889	broad.mit.edu	37	4	164271932	164271932	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:164271932C>T	uc003iqn.2	+	4	689	c.507C>T	c.(505-507)GCC>GCT	p.A169A		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	169	Helical; Name=4; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TAGGTTTTGCCATCTGTTCTC	0.408													46	148					0	0	0.003610	0	0
NPY5R	4889	broad.mit.edu	37	4	164272238	164272238	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:164272238C>T	uc003iqn.2	+	4	995	c.813C>T	c.(811-813)CTC>CTT	p.L271L		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	271	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				AGGTGAAACTCTCTGGCAGCC	0.398													37	19					0	0	0.005524	0	0
TRIM60	166655	broad.mit.edu	37	4	165961360	165961360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:165961360G>A	uc003iqy.1	+	3	306	c.136G>A	c.(136-138)GAT>AAT	p.D46N	TRIM60_uc010iqx.1_Missense_Mutation_p.D46N	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	46	RING-type.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		ATCCTGGAAGGATCTAGATGA	0.493													30	81					0	0	0.001786	0	0
GK3P	2713	broad.mit.edu	37	4	166200246	166200246	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:166200246C>T	uc003ird.3	-	1	930	c.552G>A	c.(550-552)TGG>TGA	p.W184*	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						CTGTCAAACTCCAAATAAGCC	0.418													10	19					0	0	0.000978	0	0
TLL1	7092	broad.mit.edu	37	4	166924680	166924680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:166924680G>A	uc003irh.1	+	6	1417	c.770G>A	c.(769-771)CGA>CAA	p.R257Q	TLL1_uc011cjn.1_Missense_Mutation_p.R257Q|TLL1_uc011cjo.1_Missense_Mutation_p.R81Q	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	257	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGACCAGATCGAGATAACCAC	0.408													14	35					0	0	0.003163	0	0
TLL1	7092	broad.mit.edu	37	4	166976255	166976255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:166976255G>A	uc003irh.1	+	13	2199	c.1552G>A	c.(1552-1554)GAC>AAC	p.D518N	TLL1_uc011cjn.1_Missense_Mutation_p.D541N|TLL1_uc011cjo.1_Missense_Mutation_p.D342N	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	518	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TTGTGCTTATGACTACCTGGA	0.343													33	37					0	0	0.004878	0	0
TLL1	7092	broad.mit.edu	37	4	167021925	167021925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:167021925C>T	uc003irh.1	+	21	3586	c.2939C>T	c.(2938-2940)TCA>TTA	p.S980L	TLL1_uc011cjn.1_Missense_Mutation_p.S1003L|TLL1_uc011cjo.1_Missense_Mutation_p.S804L	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	980	CUB 5.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ATTGGAGATTCAGTTTTAATT	0.323													59	49					0	0	0.003610	0	0
PALLD	23022	broad.mit.edu	37	4	169812165	169812165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:169812165G>A	uc011cjx.1	+	11	2268	c.2057G>A	c.(2056-2058)CGA>CAA	p.R686Q	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.R686Q|PALLD_uc003irv.2_Missense_Mutation_p.R304Q|PALLD_uc003irw.2_Missense_Mutation_p.R188Q	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	910					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GACCTGGAACGAAAACTTCGC	0.473									Pancreatic_Cancer_Familial_Clustering_of				28	25					0	0	0.006320	0	0
SH3RF1	57630	broad.mit.edu	37	4	170017731	170017731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:170017731C>T	uc003isa.1	-	12	2941	c.2606G>A	c.(2605-2607)GGC>GAC	p.G869D		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	869	SH3 4.					Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		TTGTAATGTGCCTTTGAACCA	0.418													55	36					0	0	0.003610	0	0
ADAM29	11086	broad.mit.edu	37	4	175898965	175898965	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:175898965G>A	uc003iuc.2	+	5	2959	c.2289G>A	c.(2287-2289)GTG>GTA	p.V763V	ADAM29_uc003iud.2_Silent_p.V763V|ADAM29_uc010irr.2_Silent_p.V763V|ADAM29_uc011cki.1_Silent_p.V763V	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	763	Cytoplasmic (Potential).|9 X 9 AA approximate repeats.|3.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AACCTCCTGTGACACCCTCCC	0.567													79	57					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183675719	183675719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:183675719C>T	uc003ivd.1	+	21	4236	c.4199C>T	c.(4198-4200)ACA>ATA	p.T1400I	ODZ3_uc003ive.1_Missense_Mutation_p.T813I	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1400	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GCGGTGCAGACAACACTGGAA	0.512													17	13					0	0	0.004990	0	0
WWC2	80014	broad.mit.edu	37	4	184166646	184166646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:184166646C>T	uc010irx.2	+	6	862	c.680C>T	c.(679-681)TCT>TTT	p.S227F	WWC2_uc003ivk.3_Missense_Mutation_p.S22F|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Intron	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	227	Potential.							p.S227F(1)		ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		GAACTAAAATCTATCAGAAAG	0.368													16	14					0	0	0.004007	0	0
UFSP2	55325	broad.mit.edu	37	4	186329116	186329116	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:186329116A>G	uc003ixo.2	-	9	1212	c.1095T>C	c.(1093-1095)GGT>GGC	p.G365G	UFSP2_uc003ixn.2_Silent_p.G240G|UFSP2_uc003ixq.2_Silent_p.G255G|UFSP2_uc003ixp.2_RNA	NM_018359	NP_060829	Q9NUQ7	UFSP2_HUMAN	UFM1-specific peptidase 2	365						endoplasmic reticulum|nucleus	small conjugating protein-specific protease activity				0		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;0.00109)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;3.4e-25)|Epithelial(43;2.23e-22)|OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;8.1e-05)|GBM - Glioblastoma multiforme(59;0.000148)|STAD - Stomach adenocarcinoma(60;0.000782)|LUSC - Lung squamous cell carcinoma(40;0.00939)|COAD - Colon adenocarcinoma(29;0.0108)|READ - Rectum adenocarcinoma(43;0.166)		TTGACGTTATACCGATCAATT	0.383													7	24					0	0	0.003080	0	0
SORBS2	8470	broad.mit.edu	37	4	186544548	186544548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:186544548C>T	uc003iyl.2	-	13	2881	c.2023G>A	c.(2023-2025)GAA>AAA	p.E675K	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.E775K|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.E579K|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.E789K|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	675						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		CTGGCTCTTTCGTGTTTTAAC	0.423													29	90					0	0	0.002096	0	0
TRIML1	339976	broad.mit.edu	37	4	189068478	189068478	+	Silent	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:189068478G>T	uc003izm.1	+	6	1474	c.1359G>T	c.(1357-1359)GGG>GGT	p.G453G	TRIML1_uc003izn.1_Silent_p.G177G	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	453	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CAAATGAGGGGACAAACACAG	0.577													28	51					1.68575e-08	2.44331e-08	0.007291	1	0
FRG2	448831	broad.mit.edu	37	4	190947577	190947577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:190947577C>T	uc003izv.2	-	3	346	c.293G>A	c.(292-294)AGA>AAA	p.R98K	FRG2_uc011clh.1_Missense_Mutation_p.R99K	NM_001005217	NP_001005217	Q64ET8	FRG2_HUMAN	FSHD region gene 2	98						nucleus				ovary(1)	1		all_cancers(14;1.01e-50)|all_epithelial(14;6.7e-35)|all_lung(41;2.17e-14)|Lung NSC(41;4.95e-14)|Breast(6;3.4e-05)|Melanoma(20;0.000539)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|all_hematologic(60;0.0489)|Prostate(90;0.0513)		all cancers(3;3.83e-31)|Epithelial(3;1.36e-30)|OV - Ovarian serous cystadenocarcinoma(60;1.99e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00831)|READ - Rectum adenocarcinoma(43;0.155)		ACTCATTTTTCTTTTCCTGCA	0.443													40	30					0	0	0.003610	0	0
TRIP13	9319	broad.mit.edu	37	5	911963	911963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:911963C>T	uc003jbr.2	+	10	982	c.872C>T	c.(871-873)TCC>TTC	p.S291F		NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	291					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			AACAGGCATTCCAATGTTGTG	0.542													6	34					0	0	0.003080	0	0
SLC6A19	340024	broad.mit.edu	37	5	1214133	1214133	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:1214133C>T	uc003jbw.3	+	6	896	c.840C>T	c.(838-840)TCC>TCT	p.S280S		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	280	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCTCCTTCTCCCTGGCCTTCG	0.637													7	76					0	0	0.004482	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244835	1244835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:1244835C>T	uc003jby.1	+	11	1732	c.1609C>T	c.(1609-1611)CTC>TTC	p.L537F		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	537	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTACATCATCCTCCTGTTCTG	0.612													11	47					0	0	0.000978	0	0
SLC6A3	6531	broad.mit.edu	37	5	1443098	1443098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:1443098G>A	uc003jck.2	-	2	336	c.215C>T	c.(214-216)TCC>TTC	p.S72F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	72	Helical; Name=1; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GCCAATGACGGACAGGAGAAA	0.612													19	65					0	0	0.007413	0	0
IRX1	79192	broad.mit.edu	37	5	3599525	3599525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:3599525C>T	uc003jde.2	+	2	515	c.463C>T	c.(463-465)CCC>TCC	p.P155S		NM_024337	NP_077313	P78414	IRX1_HUMAN	iroquois homeobox protein 1	155	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						GAATCCCTACCCCACCAAGGG	0.642													17	75					0	0	0.007413	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5186172	5186172	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:5186172C>T	uc003jdl.2	+	5	909	c.771C>T	c.(769-771)CCC>CCT	p.P257P	ADAMTS16_uc003jdk.1_Silent_p.P257P|ADAMTS16_uc003jdj.1_Silent_p.P257P	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	257					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TAGACATGCCCCAGCCTCCCA	0.468													43	234					0	0	0.003610	0	0
ADCY2	108	broad.mit.edu	37	5	7626297	7626297	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:7626297C>T	uc003jdz.1	+	4	655	c.588C>T	c.(586-588)ATC>ATT	p.I196I		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	196	Helical; (Potential).			VWQILANVIIFICGNLAGAY -> GLADPGQCDHFHLWEPG XTN (in Ref. 1; AAP97285).	activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						CCAATGTGATCATTTTCATCT	0.443													21	153					0	0	0.002299	0	0
SEMA5A	9037	broad.mit.edu	37	5	9154728	9154728	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:9154728G>A	uc003jek.2	-	12	2065	c.1353C>T	c.(1351-1353)TTC>TTT	p.F451F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	451	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCCTCTCAGGGAAGAGCTCAA	0.557													43	57					0	0	0.003610	0	0
CTNND2	1501	broad.mit.edu	37	5	11732286	11732286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:11732286C>T	uc003jfa.1	-	2	281	c.136G>A	c.(136-138)GAA>AAA	p.E46K	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	46					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GAGGTGGTTTCTGTTTCAGAG	0.478													54	34					0	0	0.003610	0	0
CTNND2	1501	broad.mit.edu	37	5	11732344	11732344	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:11732344C>T	uc003jfa.1	-	2	223	c.78G>A	c.(76-78)GAG>GAA	p.E26E	CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	26					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AACTCGTCTTCTCTGAGGCTG	0.507													17	77					0	0	0.007413	0	0
DNAH5	1767	broad.mit.edu	37	5	13737574	13737574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13737574C>T	uc003jfd.2	-	66	11284	c.11242G>A	c.(11242-11244)GAA>AAA	p.E3748K	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3748	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTACATCTTCCATCAGATGA	0.363									Kartagener_syndrome				12	60					0	0	0.000978	0	0
DNAH5	1767	broad.mit.edu	37	5	13766175	13766175	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13766175C>T	uc003jfd.2	-	59	10053	c.10011G>A	c.(10009-10011)GTG>GTA	p.V3337V	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3337	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGTCAATTTTCACAGCACTGA	0.493									Kartagener_syndrome				24	103					0	0	0.003954	0	0
DNAH5	1767	broad.mit.edu	37	5	13793771	13793771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13793771C>T	uc003jfd.2	-	49	8119	c.8077G>A	c.(8077-8079)GAG>AAG	p.E2693K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2693	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGGTGAACTCCCCAGGCTTC	0.443									Kartagener_syndrome				88	43					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13823447	13823447	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13823447C>T	uc003jfd.2	-	40	6654	c.6612G>A	c.(6610-6612)TTG>TTA	p.L2204L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2204					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GATCTTCAATCAAACTCAAAA	0.368									Kartagener_syndrome				80	31					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13829760	13829760	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13829760G>A	uc003jfd.2	-	38	6345	c.6303C>T	c.(6301-6303)TTC>TTT	p.F2101F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2101	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCACTGAGCGGAAATTAATCT	0.453									Kartagener_syndrome				30	42					0	0	0.002836	0	0
DNAH5	1767	broad.mit.edu	37	5	13865925	13865925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13865925G>A	uc003jfd.2	-	27	4249	c.4207C>T	c.(4207-4209)CTT>TTT	p.L1403F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1403	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTATTTCAAGAAGCTGAGGA	0.328									Kartagener_syndrome				42	21					0	0	0.003214	0	0
DNAH5	1767	broad.mit.edu	37	5	13900349	13900349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13900349C>T	uc003jfd.2	-	15	2267	c.2225G>A	c.(2224-2226)CGA>CAA	p.R742Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	742	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTATCTATCTCGTTTCTGGAA	0.388									Kartagener_syndrome				8	49					0	0	0.004482	0	0
DNAH5	1767	broad.mit.edu	37	5	13901467	13901467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13901467G>A	uc003jfd.2	-	14	1988	c.1946C>T	c.(1945-1947)GCT>GTT	p.A649V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	649	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTTAGCACAGCTGGGTGCTG	0.557									Kartagener_syndrome				35	18					0	0	0.005524	0	0
DNAH5	1767	broad.mit.edu	37	5	13914702	13914702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:13914702C>T	uc003jfd.2	-	10	1289	c.1247G>A	c.(1246-1248)GGA>GAA	p.G416E	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	416	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGAAGCGGTTCCATTATTGGT	0.358									Kartagener_syndrome				42	35					0	0	0.002852	0	0
FAM105A	54491	broad.mit.edu	37	5	14601342	14601342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:14601342G>A	uc003jfj.2	+	3	358	c.245G>A	c.(244-246)AGA>AAA	p.R82K		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	82										ovary(1)	1	Lung NSC(4;0.00592)					TATCTGCAGAGAAAATTCAAA	0.299													6	48					0	0	0.003080	0	0
FBXL7	23194	broad.mit.edu	37	5	15928222	15928222	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:15928222C>T	uc003jfn.1	+	3	832	c.351C>T	c.(349-351)CTC>CTT	p.L117L		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	117	F-box.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						TAGACCGGCTCCCGGACCACT	0.692													9	3					0	0	0.000978	0	0
MYO10	4651	broad.mit.edu	37	5	16680099	16680099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:16680099G>A	uc003jft.3	-	33	4967	c.4499C>T	c.(4498-4500)GCC>GTC	p.A1500V	MYO10_uc011cnb.1_Missense_Mutation_p.A129V|MYO10_uc011cnc.1_Missense_Mutation_p.A379V|MYO10_uc011cnd.1_Missense_Mutation_p.A857V|MYO10_uc011cne.1_Missense_Mutation_p.A857V|MYO10_uc010itx.2_Missense_Mutation_p.A1122V	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1500					axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						GTCGATCGGGGCCTTGGTGTC	0.552													7	21					0	0	0.004482	0	0
CDH18	1016	broad.mit.edu	37	5	19571736	19571736	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:19571736A>G	uc003jgc.2	-	7	1582	c.1205T>C	c.(1204-1206)GTT>GCT	p.V402A	CDH18_uc003jgd.2_Missense_Mutation_p.V402A|CDH18_uc011cnm.1_Missense_Mutation_p.V402A	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	402	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AACTGTACCAACGACGGTCCC	0.423													40	16					0	0	0.002852	0	0
CDH18	1016	broad.mit.edu	37	5	19839093	19839093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:19839093C>T	uc003jgc.2	-	2	380	c.3G>A	c.(1-3)ATG>ATA	p.M1I	CDH18_uc003jgd.2_Missense_Mutation_p.M1I|CDH18_uc011cnm.1_Missense_Mutation_p.M1I	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	1					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TAGTAATTTTCATTGTAAGAT	0.428													32	12					0	0	0.002836	0	0
PRDM9	56979	broad.mit.edu	37	5	23517998	23517998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:23517998C>T	uc003jgo.2	+	5	492	c.310C>T	c.(310-312)CCT>TCT	p.P104S		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	104					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AGTCAAACCTCCTTGGATGGC	0.358										HNSCC(3;0.000094)			100	40					0	0	0.003610	0	0
PRDM9	56979	broad.mit.edu	37	5	23527689	23527689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:23527689C>T	uc003jgo.2	+	11	2674	c.2492C>T	c.(2491-2493)CCC>CTC	p.P831L		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	831					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GGGGAGAAGCCCTATGTCTGC	0.587										HNSCC(3;0.000094)			27	99					0	0	0.007291	0	0
CDH9	1007	broad.mit.edu	37	5	26903766	26903766	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:26903766C>A	uc003jgs.1	-	6	1148	c.979G>T	c.(979-981)GGG>TGG	p.G327W	CDH9_uc010iug.2_Missense_Mutation_p.G327W	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	327	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GTTATAATCCCTTCCTGTGTA	0.403													27	150					2.61193e-14	3.80001e-14	0.001786	1	0
CDH9	1007	broad.mit.edu	37	5	26915831	26915831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:26915831C>T	uc003jgs.1	-	3	599	c.430G>A	c.(430-432)GAA>AAA	p.E144K	CDH9_uc010iug.2_Missense_Mutation_p.E144K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	144	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATGATAAATTCCGATTCCGGT	0.398													32	149					0	0	0.002445	0	0
CDH6	1004	broad.mit.edu	37	5	31317540	31317540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:31317540C>T	uc003jhe.1	+	10	1897	c.1571C>T	c.(1570-1572)TCG>TTG	p.S524L	CDH6_uc003jhd.1_Missense_Mutation_p.S524L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	524	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CACCAATTTTCGTTTTCCTTG	0.403													48	26					0	0	0.003610	0	0
CDH6	1004	broad.mit.edu	37	5	31323113	31323113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:31323113G>A	uc003jhe.1	+	12	2397	c.2071G>A	c.(2071-2073)GAC>AAC	p.D691N		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	691	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ATTACGAAGGGACATTGTGCC	0.498													34	19					0	0	0.003271	0	0
RNASEN	29102	broad.mit.edu	37	5	31526376	31526377	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:31526376_31526377GG>CA	uc003jhg.2	-	4	1022_1023	c.663_664CC>TG	c.(661-666)TCCCCA>TCTGCA	p.P222A	RNASEN_uc003jhh.2_Missense_Mutation_p.P222A|RNASEN_uc003jhi.2_Missense_Mutation_p.P222A|RNASEN_uc010iui.1_Missense_Mutation_p.P213A	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	222	Arg-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						AGCCTTTCTGGGGACCTTCTCT	0.564													9	46					0	0	0.004672	0	0
RNASEN	29102	broad.mit.edu	37	5	31526613	31526613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:31526613G>A	uc003jhg.2	-	4	786	c.427C>T	c.(427-429)CCC>TCC	p.P143S	RNASEN_uc003jhh.2_Missense_Mutation_p.P143S|RNASEN_uc003jhi.2_Missense_Mutation_p.P143S|RNASEN_uc010iui.1_Missense_Mutation_p.P134S	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	143	Pro-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						ATCATGAAGGGGAAAGTGCCT	0.587													5	14					0	0	0.000602	0	0
RNASEN	29102	broad.mit.edu	37	5	31526876	31526876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:31526876G>A	uc003jhg.2	-	4	523	c.164C>T	c.(163-165)CCT>CTT	p.P55L	RNASEN_uc003jhh.2_Missense_Mutation_p.P55L|RNASEN_uc003jhi.2_Missense_Mutation_p.P55L|RNASEN_uc010iui.1_Missense_Mutation_p.P46L	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	55	Pro-rich.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						GGCACTTGGAGGTTCATATTG	0.557													19	2					0	0	0.001216	0	0
Unknown	0	broad.mit.edu	37	5	33162268	33162268	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:33162268C>T	uc003jhx.2	+	1		c.3C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTTTCTCTTTCCAGCCAGCGC	0.418													15	13					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	5	33162567	33162567	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:33162567G>A	uc003jhx.2	+	1		c.302G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTCGTACCAAGACCCTGGTGA	0.527													26	12					0	0	0.001786	0	0
DNAJC21	134218	broad.mit.edu	37	5	34945102	34945102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:34945102G>A	uc003jjc.2	+	8	1341	c.1114G>A	c.(1114-1116)GAA>AAA	p.E372K	DNAJC21_uc003jjb.2_Missense_Mutation_p.E372K|DNAJC21_uc010iuu.1_Missense_Mutation_p.E256K|DNAJC21_uc003jjd.2_5'Flank	NM_001012339	NP_001012339	Q5F1R6	DJC21_HUMAN	DnaJ homology subfamily A member 5 isoform 2	372	Glu-rich.				protein folding	ribosome	heat shock protein binding|nucleic acid binding|unfolded protein binding|zinc ion binding			breast(1)|skin(1)	2	all_lung(31;7.08e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			CAATTCTGAGGAAGAAATGGA	0.328													67	26					0	0	0.003610	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965835	35965835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:35965835G>A	uc003jjv.1	-	4	653	c.496C>T	c.(496-498)CTT>TTT	p.L166F	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.L166F|UGT3A1_uc011cor.1_Missense_Mutation_p.L132F|UGT3A1_uc003jjy.1_Missense_Mutation_p.L112F	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	166	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTGGTGGGAAGAATGGCCACA	0.433													9	42					0	0	0.004482	0	0
C5orf42	65250	broad.mit.edu	37	5	37201695	37201695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:37201695C>T	uc011cpa.1	-	19	3736	c.3505G>A	c.(3505-3507)GAA>AAA	p.E1169K	C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.E244K|C5orf42_uc011cpb.1_Missense_Mutation_p.E50K	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1169										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			AAGCTTACTTCACTAAGAATA	0.328													47	24					0	0	0.003610	0	0
LIFR	3977	broad.mit.edu	37	5	38523666	38523666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:38523666G>A	uc010ive.1	-	5	748	c.416C>T	c.(415-417)CCA>CTA	p.P139L	LIFR_uc003jli.2_Missense_Mutation_p.P139L	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	139	Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					CAAGATCTCTGGAGTATCTGG	0.348			T	PLAG1	salivary adenoma								10	79					0	0	0.000978	0	0
OSMR	9180	broad.mit.edu	37	5	38904051	38904051	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:38904051G>A	uc003jln.1	+	8	1426	c.1059G>A	c.(1057-1059)TGG>TGA	p.W353*		NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	353	Fibronectin type-III 1.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TCATGACCTGGAAGGTGCACT	0.313													5	46					0	0	0.000602	0	0
FYB	2533	broad.mit.edu	37	5	39119080	39119080	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:39119080T>A	uc003jls.2	-	14	2226	c.2159A>T	c.(2158-2160)AAA>ATA	p.K720I	FYB_uc003jlt.2_Missense_Mutation_p.K766I|FYB_uc003jlu.2_Missense_Mutation_p.K720I|FYB_uc011cpl.1_Missense_Mutation_p.K776I	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	720					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TCCCCACTTTTTAGAAGTTAT	0.328													10	35					0	0	0.006214	0	0
DAB2	1601	broad.mit.edu	37	5	39377034	39377034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:39377034G>A	uc003jlx.2	-	12	2386	c.1855C>T	c.(1855-1857)CCT>TCT	p.P619S	DAB2_uc003jlw.2_Missense_Mutation_p.P598S	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	619					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GGCTGAGGAGGAGTGACCAGG	0.532											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	73	101					0	0	0.003610	0	0
C7	730	broad.mit.edu	37	5	40962209	40962209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:40962209C>T	uc003jmh.2	+	13	1798	c.1684C>T	c.(1684-1686)CCT>TCT	p.P562S	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	562					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ACATTGCTTTCCTTTGTCTTT	0.333													4	4					0	0	0.000248	0	0
C7	730	broad.mit.edu	37	5	40964869	40964869	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:40964869G>A	uc003jmh.2	+	14	1890	c.1776G>A	c.(1774-1776)GGG>GGA	p.G592G	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	592	Sushi 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TTCCTGTGGGGAAAAATGTAG	0.368													6	77					0	0	0.001168	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41005013	41005013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:41005013C>T	uc003jmj.3	-	36	4364	c.3874G>A	c.(3874-3876)GAA>AAA	p.E1292K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E847K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1292	HEAT 14.						binding			ovary(6)|central_nervous_system(2)	8						AGGATTGGTTCCTTCATGAGC	0.493													5	30					0	0	0.001168	0	0
C6	729	broad.mit.edu	37	5	41143050	41143050	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:41143050T>C	uc003jmk.2	-	18	2892	c.2682A>G	c.(2680-2682)CAA>CAG	p.Q894Q	C6_uc003jml.1_Silent_p.Q894Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	894	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CACAGTAGAGTTGGTTTCCAC	0.443													43	30					0	0	0.002222	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382018	41382018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:41382018G>A	uc003jmm.1	-	2	824	c.722C>T	c.(721-723)TCG>TTG	p.S241L		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	241					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TATAAAAAACGATCCCTTCTT	0.507													54	37					0	0	0.003610	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382115	41382115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:41382115C>T	uc003jmm.1	-	2	727	c.625G>A	c.(625-627)GGG>AGG	p.G209R		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	209					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						ATCATCTGCCCAGGCCAGAGA	0.512													17	37					0	0	0.004990	0	0
GHR	2690	broad.mit.edu	37	5	42719252	42719252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:42719252C>T	uc003jmt.2	+	10	1686	c.1643C>T	c.(1642-1644)CCT>CTT	p.P548L	GHR_uc011cpq.1_Missense_Mutation_p.P361L	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	548	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	CCTGTGGCTCCTCACATCAAG	0.493													4	31					0	0	0.000602	0	0
HCN1	348980	broad.mit.edu	37	5	45262581	45262581	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:45262581G>A	uc003jok.2	-	8	2140	c.2115C>T	c.(2113-2115)AGC>AGT	p.S705S		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	705	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GTACAGGAGGGCTGCAGACCG	0.557													31	10					0	0	0.002836	0	0
HCN1	348980	broad.mit.edu	37	5	45396809	45396809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:45396809C>T	uc003jok.2	-	4	1040	c.1015G>A	c.(1015-1017)GAT>AAT	p.D339N		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	339	Extracellular (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CCCCAAGAATCATTCTGCAAC	0.418													14	62					0	0	0.003163	0	0
PARP8	79668	broad.mit.edu	37	5	50055551	50055551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:50055551C>T	uc003jon.3	+	5	441	c.259C>T	c.(259-261)CAT>TAT	p.H87Y	PARP8_uc011cpz.1_Intron|PARP8_uc003joo.2_Missense_Mutation_p.H87Y|PARP8_uc003jop.2_Missense_Mutation_p.H87Y	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	87						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				AGTAATTTTTCATAGAATAGC	0.254													13	46					0	0	0.004990	0	0
PELO	53918	broad.mit.edu	37	5	52096729	52096729	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:52096729C>T	uc003jos.2	+	2	1486	c.501C>T	c.(499-501)ATC>ATT	p.I167I	ITGA1_uc003jov.2_Intron|ITGA1_uc003jou.2_Intron|PELO_uc003jot.1_Intron	NM_015946	NP_057030	Q9BRX2	PELO_HUMAN	pelota homolog	167					cell cycle|cell division|translation	cytoplasm|nucleus	endonuclease activity|metal ion binding|protein binding				0		Lung NSC(810;4.94e-05)|Breast(144;0.0848)				AGGTGAACATCCCTAGGAAAA	0.567													61	41					0	0	0.003610	0	0
ITGA1	3672	broad.mit.edu	37	5	52183790	52183790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:52183790C>T	uc003jou.2	+	8	969	c.917C>T	c.(916-918)TCC>TTC	p.S306F	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	306	Extracellular (Potential).|VWFA.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				CAACGGTTTTCCATAGCTGTA	0.393													6	49					0	0	0.001984	0	0
ITGA1	3672	broad.mit.edu	37	5	52221138	52221138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:52221138G>A	uc003jou.2	+	19	2486	c.2434G>A	c.(2434-2436)GAA>AAA	p.E812K	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.E343K	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	812	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				TGGAAATAAGGAAAAATGTAT	0.398													5	77					0	0	0.001984	0	0
ESM1	11082	broad.mit.edu	37	5	54281313	54281313	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:54281313G>A	uc003jpk.2	-	1	102	c.33C>T	c.(31-33)CTC>CTT	p.L11L	ESM1_uc010ivt.2_Silent_p.L11L	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	11					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			GTGCAGGCACGAGGAGCGTGG	0.602													5	43					0	0	0.000602	0	0
DHX29	54505	broad.mit.edu	37	5	54566508	54566508	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:54566508G>T	uc003jpx.2	-	19	3011	c.2891C>A	c.(2890-2892)TCT>TAT	p.S964Y	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	964	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				CTCCACCAAAGAACTCATCTG	0.428													11	60					6.40141e-05	9.23404e-05	0.000978	1	0
DHX29	54505	broad.mit.edu	37	5	54569141	54569141	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:54569141G>T	uc003jpx.2	-	17	2875	c.2755C>A	c.(2755-2757)CCC>ACC	p.P919T	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	919	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				CCTGGAGGGGGAAGTGTGAAT	0.363													36	15					6.04917e-29	8.83192e-29	0.006999	1	0
DDX4	54514	broad.mit.edu	37	5	55034816	55034816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:55034816G>A	uc003jqg.3	+	2	99	c.25G>A	c.(25-27)GAA>AAA	p.E9K	DDX4_uc010ivz.2_Missense_Mutation_p.E9K|DDX4_uc003jqh.3_Missense_Mutation_p.E9K	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	9					multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TTGGGAAGCAGAAATCAACCC	0.303													79	30					0	0	0.003610	0	0
PLK2	10769	broad.mit.edu	37	5	57751513	57751513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:57751513G>A	uc003jrn.2	-	11	1605	c.1478C>T	c.(1477-1479)CCC>CTC	p.P493L		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	493					positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		CTGCTCTTTGGGAATGCAATC	0.493													17	20					0	0	0.007413	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59983018	59983018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:59983018G>A	uc003jsh.2	-	2	158	c.85C>T	c.(85-87)CCG>TCG	p.P29S	DEPDC1B_uc011cqm.1_Missense_Mutation_p.P29S|DEPDC1B_uc011cqn.1_Missense_Mutation_p.P2S	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	29	DEP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				TTCCGTAACGGCATCTTAGCA	0.443													18	100					0	0	0.001882	0	0
HTR1A	3350	broad.mit.edu	37	5	63256644	63256645	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:63256644_63256645GG>AA	uc011cqt.1	-	1	902_903	c.902_903CC>TT	c.(901-903)TCC>TTT	p.S301F		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	301	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	AGTGCTCTTTGGAGTTGCCCAC	0.644													7	31					0	0	0.004672	0	0
RGS7BP	401190	broad.mit.edu	37	5	63871694	63871694	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:63871694C>T	uc003jtj.2	+	3	426	c.426C>T	c.(424-426)TCC>TCT	p.S142S	RGS7BP_uc011cqu.1_Silent_p.S9S	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	142					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		TGCTAAAATCCATATGTCTGC	0.428													10	60					0	0	0.000673	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64511160	64511160	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:64511160G>A	uc003jtp.2	-	19	3241	c.2427C>T	c.(2425-2427)CTC>CTT	p.L809L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.L430L	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	809	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CCATGACGATGAGATTTTCTG	0.318													11	64					0	0	0.001855	0	0
TAF9	6880	broad.mit.edu	37	5	68651550	68651550	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:68651550G>A	uc003jwa.2	-	4	344	c.252C>T	c.(250-252)TTC>TTT	p.F84F	TAF9_uc003jwb.2_Silent_p.F81F	NM_016283	NP_057367	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		AGCGTTCAGGGAAGAAATCAC	0.333													15	77					0	0	0.003163	0	0
MAP1B	4131	broad.mit.edu	37	5	71490076	71490076	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:71490076C>T	uc003kbw.3	+	5	1135	c.894C>T	c.(892-894)ATC>ATT	p.I298I	MAP1B_uc010iyw.1_Silent_p.I315I|MAP1B_uc010iyx.1_Silent_p.I172I|MAP1B_uc010iyy.1_Silent_p.I172I	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	298						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GGAAGCTCATCCGACACTTAG	0.493													90	46					0	0	0.003610	0	0
MRPS27	23107	broad.mit.edu	37	5	71519533	71519533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:71519533G>A	uc003kbz.3	-	10	1018	c.982C>T	c.(982-984)CCT>TCT	p.P328S	MRPS27_uc003kca.3_Missense_Mutation_p.P272S|MRPS27_uc011cse.1_Missense_Mutation_p.P342S|MRPS27_uc011csd.1_Missense_Mutation_p.P109S|MRPS27_uc010iyz.1_RNA	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	328						mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		AGGTATTGAGGAAGCTTGGAC	0.468													55	67					0	0	0.003610	0	0
MRPS27	23107	broad.mit.edu	37	5	71533937	71533937	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:71533937G>A	uc003kbz.3	-	5	336	c.300C>T	c.(298-300)AAC>AAT	p.N100N	MRPS27_uc003kca.3_Silent_p.N44N|MRPS27_uc011cse.1_Silent_p.N114N|MRPS27_uc010iza.2_Silent_p.N44N|MRPS27_uc010iyz.1_RNA	NM_015084	NP_055899	Q92552	RT27_HUMAN	mitochondrial ribosomal protein S27	100						mitochondrion|ribosome					0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-53)		GGTACCAGCAGTTGGGGCTGT	0.403													41	17					0	0	0.007835	0	0
PTCD2	79810	broad.mit.edu	37	5	71631620	71631620	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:71631620G>A	uc003kcb.2	+	6	558	c.548_splice	c.e6-1	p.S183_splice	PTCD2_uc011csf.1_Splice_Site|PTCD2_uc003kcc.2_Splice_Site_p.S31_splice|PTCD2_uc011csg.1_Splice_Site_p.G11_splice|PTCD2_uc011csh.1_Splice_Site_p.G74_splice|PTCD2_uc003kcd.2_Splice_Site	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2												0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		ACTTTTGGCAGGTGCTTTGCA	0.408													37	17					0	0	0.006999	0	0
ZNF366	167465	broad.mit.edu	37	5	71739929	71739929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:71739929G>A	uc003kce.1	-	5	2075	c.1889C>T	c.(1888-1890)CCC>CTC	p.P630L		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	630					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		AGGGCTGTAGGGCTCCACCTC	0.677													18	179					0	0	0.001882	0	0
TMEM174	134288	broad.mit.edu	37	5	72469221	72469221	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:72469221G>A	uc010izc.2	+	1	199	c.151G>A	c.(151-153)GGG>AGG	p.G51R		NM_153217	NP_694949	Q8WUU8	TM174_HUMAN	transmembrane protein 174	51	Helical; (Potential).					integral to membrane				ovary(1)	1		Lung NSC(167;0.0378)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;1.46e-54)		GGGACTGGTGGGGATCACATT	0.572													95	35					0	0	0.003610	0	0
SV2C	22987	broad.mit.edu	37	5	75581632	75581632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:75581632G>A	uc003kei.1	+	6	1208	c.1074G>A	c.(1072-1074)ATG>ATA	p.M358I		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	358	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		AAGCTTGGATGATTCTGAAGT	0.463													16	96					0	0	0.001216	0	0
F2RL1	2150	broad.mit.edu	37	5	76128740	76128740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:76128740G>A	uc003keo.2	+	2	483	c.308G>A	c.(307-309)CGA>CAA	p.R103Q		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	103	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		TTTCTTTTCCGAACTAAGAAG	0.478													450	233					0	0	0.003610	0	0
PDE8B	8622	broad.mit.edu	37	5	76646927	76646927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:76646927G>A	uc003kfa.2	+	9	1100	c.1055G>A	c.(1054-1056)GGG>GAG	p.G352E	PDE8B_uc003kfb.2_Missense_Mutation_p.G332E|PDE8B_uc003kfc.2_Missense_Mutation_p.G352E|PDE8B_uc003kfd.2_Missense_Mutation_p.G305E|PDE8B_uc003kfe.2_Intron	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	352					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		CGGAAATCCGGGGACAGCATC	0.502													55	392					0	0	0.003610	0	0
CMYA5	202333	broad.mit.edu	37	5	79033165	79033165	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79033165C>T	uc003kgc.2	+	2	8649	c.8577C>T	c.(8575-8577)TCC>TCT	p.S2859S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2859						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATGACACATCCGATGTGCCTA	0.413													89	29					0	0	0.003610	0	0
CMYA5	202333	broad.mit.edu	37	5	79089293	79089293	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79089293C>T	uc003kgc.2	+	12	11895	c.11823C>T	c.(11821-11823)TCC>TCT	p.S3941S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3941	B30.2/SPRY.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGCTGCCTTCCTGTGGCCAGC	0.557													68	27					0	0	0.003610	0	0
LOC644936	644936	broad.mit.edu	37	5	79595569	79595569	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79595569G>A	uc010jai.2	-	1	729	c.588C>T	c.(586-588)TTC>TTT	p.F196F		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						ACATCTGCTGGAAGGTGGACA	0.547													52	34					0	0	0.003610	0	0
LOC644936	644936	broad.mit.edu	37	5	79595782	79595782	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79595782G>A	uc010jai.2	-	1	516	c.375C>T	c.(373-375)TCC>TCT	p.S125S		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						ACTTCATGATGGAGTTGAAGG	0.512													29	21					0	0	0.006320	0	0
ZFYVE16	9765	broad.mit.edu	37	5	79730011	79730011	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79730011C>T	uc003kgr.3	+	3	347	c.45C>T	c.(43-45)CTC>CTT	p.L15L	ZFYVE16_uc010jak.1_Silent_p.L15L|ZFYVE16_uc003kgp.2_Silent_p.L15L|ZFYVE16_uc003kgq.3_Silent_p.L15L|ZFYVE16_uc003kgs.3_Silent_p.L15L	NM_001105251	NP_001098721	Q7Z3T8	ZFY16_HUMAN	zinc finger, FYVE domain containing 16	15					BMP signaling pathway|endosome transport|protein targeting to lysosome|regulation of endocytosis|vesicle organization	early endosome membrane	1-phosphatidylinositol binding|metal ion binding|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|protein transporter activity				0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.6e-46)|Epithelial(54;2.02e-41)|all cancers(79;5.05e-36)		TGGACAAACTCCTTGATGATT	0.333													86	36					0	0	0.003610	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855155	79855155	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:79855155G>A	uc010jam.2	-	4	1034	c.684C>T	c.(682-684)TCC>TCT	p.S228S	ANKRD34B_uc003kgw.2_Silent_p.S228S|ANKRD34B_uc010jan.2_Silent_p.S228S	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	228						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		TCCTCACAGGGGAACCTGGGT	0.527													7	57					0	0	0.001984	0	0
MSH3	4437	broad.mit.edu	37	5	80037355	80037355	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:80037355C>T	uc003kgz.2	+	11	1894	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	547					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		ATCTGGAAATCCTACAGAATC	0.333								MMR					13	76					0	0	0.002450	0	0
SSBP2	23635	broad.mit.edu	37	5	80762802	80762802	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:80762802C>A	uc003kho.2	-	9	840	c.629G>T	c.(628-630)GGA>GTA	p.G210V	SSBP2_uc010jar.2_Missense_Mutation_p.G98V|SSBP2_uc003khn.2_Missense_Mutation_p.G84V|SSBP2_uc003khp.2_Missense_Mutation_p.G218V|SSBP2_uc011ctp.1_Missense_Mutation_p.G190V|SSBP2_uc011ctq.1_Missense_Mutation_p.G188V|SSBP2_uc011ctr.1_Missense_Mutation_p.G180V	NM_012446	NP_036578	P81877	SSBP2_HUMAN	single-stranded DNA binding protein 2	210	Gly-rich.|Pro-rich.				regulation of transcription, DNA-dependent	cytoplasm|nucleus	single-stranded DNA binding		SSBP2/JAK2(4)	haematopoietic_and_lymphoid_tissue(4)|skin(1)	5		Lung NSC(167;0.00154)|all_lung(232;0.00179)|Ovarian(174;0.0338)		OV - Ovarian serous cystadenocarcinoma(54;1.07e-41)|Epithelial(54;2.79e-35)|all cancers(79;1.18e-29)		CATGTTCATTCCAGGCATTCC	0.333													32	19					9.17885e-22	1.33844e-21	0.003271	1	0
GPR98	84059	broad.mit.edu	37	5	89949562	89949562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:89949562G>A	uc003kju.2	+	20	4267	c.4171G>A	c.(4171-4173)GAA>AAA	p.E1391K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1391	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACAAACAAACGAATCCCATGT	0.393													19	4					0	0	0.007413	0	0
GPR98	84059	broad.mit.edu	37	5	90024648	90024648	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:90024648T>C	uc003kju.2	+	49	10420	c.10324T>C	c.(10324-10326)TTT>CTT	p.F3442L	GPR98_uc003kjt.2_Missense_Mutation_p.F1148L|GPR98_uc003kjv.2_Missense_Mutation_p.F1042L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3442	Extracellular (Potential).|EAR 5.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGGCAGTGGGTTTATTAACTT	0.448													52	8					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	90106148	90106148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:90106148G>A	uc003kju.2	+	74	15167	c.15071G>A	c.(15070-15072)AGA>AAA	p.R5024K	GPR98_uc003kjt.2_Missense_Mutation_p.R2730K|GPR98_uc003kjw.2_Missense_Mutation_p.R685K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5024	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGATGATCAGATTACATGTA	0.403													23	9					0	0	0.002780	0	0
TTC37	9652	broad.mit.edu	37	5	94818193	94818193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:94818193G>A	uc003klb.2	-	39	4466	c.4196C>T	c.(4195-4197)TCT>TTT	p.S1399F		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1399							binding			ovary(3)|pancreas(1)	4						AGCTGGAACAGAGGTTGAGTT	0.393													71	42					0	0	0.003610	0	0
TTC37	9652	broad.mit.edu	37	5	94852694	94852694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:94852694G>A	uc003klb.2	-	22	2632	c.2362C>T	c.(2362-2364)CGC>TGC	p.R788C		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	788							binding			ovary(3)|pancreas(1)	4						TGTGCTTGGCGATAATAATTA	0.333													15	17					0	0	0.002450	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101813454	101813454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:101813454C>T	uc003knn.2	-	3	900	c.728G>A	c.(727-729)GGA>GAA	p.G243E	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.G243E|SLCO6A1_uc003knq.2_Intron	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	243	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		AAGAGGCATTCCTGCTATTCC	0.408													23	87					0	0	0.003330	0	0
PAM	5066	broad.mit.edu	37	5	102282552	102282552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:102282552G>A	uc003knw.2	+	7	911	c.538G>A	c.(538-540)GAC>AAC	p.D180N	PAM_uc003kns.2_Missense_Mutation_p.D180N|PAM_uc003knt.2_Missense_Mutation_p.D180N|PAM_uc003knu.2_Missense_Mutation_p.D180N|PAM_uc003knv.2_Missense_Mutation_p.D180N|PAM_uc011cuz.1_Missense_Mutation_p.D83N	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	180	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	TAATAACAAGGACTGTTCTGG	0.358													6	22					0	0	0.001984	0	0
RAB9BP1	9366	broad.mit.edu	37	5	104435745	104435745	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:104435745G>A	uc003kok.2	+	1		c.571G>A				NR_000039				Homo sapiens RAB9, member RAS oncogene family, pseudogene 1 (RAB9P1), non-coding RNA.												0						TGACTTCATCGAAACCATTGG	0.413													4	3					0	0	0.000248	0	0
EFNA5	1946	broad.mit.edu	37	5	106717056	106717056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:106717056G>A	uc003kol.2	-	5	869	c.587C>T	c.(586-588)GCC>GTC	p.A196V		NM_001962	NP_001953	P52803	EFNA5_HUMAN	ephrin-A5 precursor	196					cell-cell signaling	anchored to plasma membrane|caveola|extracellular space	ephrin receptor binding				0		all_cancers(142;5.15e-06)|all_epithelial(76;4.39e-07)|Prostate(80;0.00726)|Lung NSC(167;0.0736)|Ovarian(225;0.0797)|all_lung(232;0.0854)|Colorectal(57;0.241)		Epithelial(69;1.25e-12)|OV - Ovarian serous cystadenocarcinoma(64;1.32e-11)|BRCA - Breast invasive adenocarcinoma(61;0.0376)|COAD - Colon adenocarcinoma(37;0.109)		GGATGGCTCGGCTGACTCATG	0.488													34	19					0	0	0.003755	0	0
WDR36	134430	broad.mit.edu	37	5	110459595	110459595	+	Silent	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:110459595A>T	uc003kpd.2	+	20	2526	c.2409A>T	c.(2407-2409)GCA>GCT	p.A803A	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	803					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		GATATGCTGCACCTGAACAAA	0.368													10	59					0	0	0.000673	0	0
MCC	4163	broad.mit.edu	37	5	112419847	112419847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:112419847G>A	uc003kqj.3	-	8	1546	c.1016C>T	c.(1015-1017)TCG>TTG	p.S339L	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.S529L|MCC_uc011cwb.1_Missense_Mutation_p.S339L|MCC_uc010jcd.1_Missense_Mutation_p.S301L	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	339					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		AGATGATGACGATTCGGACCT	0.443													24	111					0	0	0.004656	0	0
ZNF474	133923	broad.mit.edu	37	5	121488171	121488171	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:121488171G>A	uc003ksv.2	+	2	862	c.486G>A	c.(484-486)CAG>CAA	p.Q162Q		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	162						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		AGAGTGCCCAGGCTCAGCTGC	0.547													16	35					0	0	0.001523	0	0
ZNF474	133923	broad.mit.edu	37	5	121488633	121488633	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:121488633G>A	uc003ksv.2	+	2	1324	c.948G>A	c.(946-948)CAG>CAA	p.Q316Q		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	316						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		CAAAATATCAGAATTTGAATT	0.438													35	9					0	0	0.003755	0	0
SNCAIP	9627	broad.mit.edu	37	5	121726833	121726833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:121726833G>A	uc003ksw.1	+	2	210	c.4G>A	c.(4-6)GAA>AAA	p.E2K	SNCAIP_uc011cwl.1_5'UTR|SNCAIP_uc010jct.2_Missense_Mutation_p.E2K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E2K|SNCAIP_uc003ksy.1_5'UTR|SNCAIP_uc003ksz.1_5'UTR|SNCAIP_uc010jcu.2_5'UTR|SNCAIP_uc011cwm.1_5'UTR|SNCAIP_uc003kta.1_5'UTR|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_5'UTR|SNCAIP_uc010jcx.1_Missense_Mutation_p.E2K	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	2					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AAGAATAATGGAAGCCCCTGA	0.353													58	18					0	0	0.003610	0	0
ZNF608	57507	broad.mit.edu	37	5	123983241	123983241	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:123983241C>A	uc003ktq.1	-	4	2959	c.2836G>T	c.(2836-2838)GCT>TCT	p.A946S	ZNF608_uc003ktr.1_Intron|ZNF608_uc003kts.1_Missense_Mutation_p.A946S|ZNF608_uc003ktt.1_Missense_Mutation_p.A946S|ZNF608_uc003ktp.1_5'Flank	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	946	Ser-rich.					intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CCATCGTCAGCAGCATCAGAT	0.507													47	12					6.17242e-35	9.01642e-35	0.003610	1	0
MEGF10	84466	broad.mit.edu	37	5	126792879	126792879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:126792879C>T	uc003kuh.3	+	26	3654	c.3292C>T	c.(3292-3294)CCA>TCA	p.P1098S	MEGF10_uc003kui.3_Missense_Mutation_p.P1098S	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	1098	Cytoplasmic (Potential).|Necessary for formation of large intracellular vacuoles.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CTCCCAGGATCCATATGACCT	0.458													54	81					0	0	0.003610	0	0
FBN2	2201	broad.mit.edu	37	5	127681179	127681179	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:127681179G>A	uc003kuu.2	-	24	3526	c.3087C>T	c.(3085-3087)GTC>GTT	p.V1029V	FBN2_uc003kuv.2_Silent_p.V996V	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1029	TB 5.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		AAGCCGCCCCGACAGCACAGC	0.592													24	86					0	0	0.003330	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128956409	128956409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:128956409C>T	uc003kvb.1	+	9	1559	c.1559C>T	c.(1558-1560)TCA>TTA	p.S520L	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	520	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GGTGACGTTTCATGGTCTCGA	0.408													22	104					0	0	0.003954	0	0
IL13	3596	broad.mit.edu	37	5	131995466	131995466	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:131995466C>T	uc003kxj.1	+	3	293	c.279C>T	c.(277-279)ATC>ATT	p.I93I		NM_002188	NP_002179	P35225	IL13_HUMAN	interleukin 13 precursor	93					cellular component movement|immune response|inflammatory response|signal transduction	extracellular space|soluble fraction	cytokine activity			ovary(1)|skin(1)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCAGTGCCATCGAGAAGACCC	0.637													47	31					0	0	0.003610	0	0
SEC24A	10802	broad.mit.edu	37	5	134007571	134007571	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:134007571T>C	uc003kzs.2	+	4	1100	c.812T>C	c.(811-813)TTA>TCA	p.L271S	SEC24A_uc011cxu.1_Missense_Mutation_p.Y39H	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	271					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GGAGGTGGCTTATTGGGTGAG	0.328													6	52					0	0	0.001984	0	0
CATSPER3	347732	broad.mit.edu	37	5	134343724	134343724	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:134343724C>A	uc003lag.2	+	4	638	c.570C>A	c.(568-570)ATC>ATA	p.I190I		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	190	Helical; Name=Segment S5; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCATGTACATCTTCGCTATCT	0.557													28	42					1.06801e-11	1.55186e-11	0.001786	1	0
TIFAB	497189	broad.mit.edu	37	5	134785608	134785608	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:134785608G>A	uc003law.3	-	2	223	c.22C>T	c.(22-24)CTG>TTG	p.L8L	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	8											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTCACTCGCAGGACGGTGAGG	0.607													57	36					0	0	0.003610	0	0
LOC153328	153328	broad.mit.edu	37	5	135207319	135207319	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:135207319C>T	uc003laz.1	+	5	763	c.591C>T	c.(589-591)ATC>ATT	p.I197I	LOC153328_uc003lba.2_Intron			Q6ZT89	S2548_HUMAN	RecName: Full=Putative mitochondrial carrier protein FLJ44862;	197	Helical; Name=4; (Potential).|Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCTACTTCATCCCCTACGTGT	0.627													37	16					0	0	0.007835	0	0
WNT8A	7478	broad.mit.edu	37	5	137423581	137423581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:137423581G>A	uc003lcd.1	+	4	333	c.328G>A	c.(328-330)GAA>AAA	p.E110K	BRD8_uc003lcc.1_Intron|WNT8A_uc011cyj.1_Missense_Mutation_p.E128K|WNT8A_uc011cyk.1_Missense_Mutation_p.E128K	NM_058244	NP_490645	Q9H1J5	WNT8A_HUMAN	wingless-type MMTV integration site family,	110					brain segmentation|canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|cell migration involved in gastrulation|dorsal/ventral pattern formation|ectoderm development|endoderm development|eye development|hindbrain development|mesodermal cell fate commitment|negative regulation of Wnt receptor signaling pathway|neural crest cell fate commitment|neural plate pattern specification|notochord development|palate development|polarity specification of anterior/posterior axis|polarity specification of proximal/distal axis|positive regulation of fibroblast growth factor receptor signaling pathway|regulation of transcription involved in anterior/posterior axis specification|response to retinoic acid|somitogenesis|spinal cord anterior/posterior patterning|tail morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			ovary(1)|lung(1)|breast(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGGTGACTTCGAAAACTGTGG	0.483													29	128					0	0	0.007291	0	0
KDM3B	51780	broad.mit.edu	37	5	137754678	137754678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:137754678G>A	uc003lcy.1	+	14	3672	c.3472G>A	c.(3472-3474)GAA>AAA	p.E1158K	KDM3B_uc010jew.1_Missense_Mutation_p.E814K|KDM3B_uc011cys.1_Missense_Mutation_p.E190K	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1158					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TTCTGGAAACGAAACTACCTT	0.478													78	42					0	0	0.003610	0	0
CTNNA1	1495	broad.mit.edu	37	5	138163391	138163391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:138163391C>T	uc003ldh.2	+	7	1141	c.1046C>T	c.(1045-1047)TCG>TTG	p.S349L	CTNNA1_uc011cyx.1_Missense_Mutation_p.S246L|CTNNA1_uc011cyy.1_Missense_Mutation_p.S226L|CTNNA1_uc003ldi.2_Missense_Mutation_p.S47L|CTNNA1_uc003ldj.2_Missense_Mutation_p.S349L	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	349	Interaction with alpha-actinin.				adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GACCTGCTTTCGGAGTACATG	0.488													20	64					0	0	0.002299	0	0
CTNNA1	1495	broad.mit.edu	37	5	138253548	138253548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:138253548G>A	uc003ldh.2	+	11	1602	c.1507G>A	c.(1507-1509)GAT>AAT	p.D503N	CTNNA1_uc011cyx.1_Missense_Mutation_p.D400N|CTNNA1_uc011cyy.1_Missense_Mutation_p.D380N|CTNNA1_uc003ldi.2_Missense_Mutation_p.D201N|CTNNA1_uc003ldj.2_Missense_Mutation_p.D503N|CTNNA1_uc003ldl.2_Missense_Mutation_p.D133N	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	503					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AGATGCTGTCGATGACATTAC	0.408													76	266					0	0	0.003610	0	0
HBEGF	1839	broad.mit.edu	37	5	139722387	139722387	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:139722387G>A	uc003lfi.2	-	3	506	c.231C>T	c.(229-231)TCC>TCT	p.S77S	HBEGF_uc010jfj.2_Intron	NM_001945	NP_001936	Q99075	HBEGF_HUMAN	heparin-binding EGF-like growth factor	77	Extracellular (Potential).				epidermal growth factor receptor signaling pathway|muscle organ development|positive regulation of protein kinase B signaling cascade|positive regulation of wound healing	cell surface|extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|eukaryotic cell surface binding|growth factor activity|heparin binding|receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGCTTGGAGGATAAAGTGA	0.458													162	214					0	0	0.003610	0	0
SLC4A9	83697	broad.mit.edu	37	5	139751116	139751116	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:139751116C>T	uc003lfm.2	+	19	2684	c.2649C>T	c.(2647-2649)ACC>ACT	p.T883T	SLC4A9_uc003lfj.2_Silent_p.T859T|SLC4A9_uc011czg.1_Silent_p.T796T|SLC4A9_uc003lfl.2_Silent_p.T859T|SLC4A9_uc003lfk.2_Silent_p.T845T	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	883	Membrane (anion exchange).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCTCTGACCAGGGTCCACC	0.532													29	158					0	0	0.002836	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139905617	139905617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:139905617C>T	uc003lfs.1	+	26	4653	c.4529C>T	c.(4528-4530)ACC>ATC	p.T1510I	ANKHD1_uc003lfr.2_Missense_Mutation_p.T1510I|ANKHD1_uc003lfu.1_Missense_Mutation_p.T990I|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.T249I|ANKHD1_uc003lfw.2_Missense_Mutation_p.T148I|ANKHD1_uc010jfl.2_5'UTR|ANKHD1-EIF4EBP3_uc003lfx.1_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1510						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTAGTGCAACCACCACCACT	0.413													66	29					0	0	0.003610	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182667	140182667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140182667G>A	uc003lhf.2	+	1	1885	c.1885G>A	c.(1885-1887)GGA>AGA	p.G629R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.G629R	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	629	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTGTACACGGGAGAGATCAG	0.657													22	54					0	0	0.002780	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202248	140202248	+	Silent	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140202248T>G	uc003lhl.2	+	1	888	c.888T>G	c.(886-888)TCT>TCG	p.S296S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.S296S|PCDHA5_uc003lhj.1_Silent_p.S296S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	296	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAATTAATTCTAATACTGGTG	0.313													8	26					0	0	0.006214	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202306	140202306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140202306G>A	uc003lhl.2	+	1	946	c.946G>A	c.(946-948)GAA>AAA	p.E316K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.E316K|PCDHA5_uc003lhj.1_Missense_Mutation_p.E316K	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	316	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACTCATATGAAATTAATAT	0.323													6	31					0	0	0.001168	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203063	140203063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140203063G>A	uc003lhl.2	+	1	1703	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.R568Q|PCDHA5_uc003lhj.1_Missense_Mutation_p.R568Q	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	568	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGTGCCTCGAGTGGGTGGC	0.721													17	77					0	0	0.006122	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207914	140207914	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140207914C>A	uc003lho.2	+	1	265	c.238C>A	c.(238-240)CAG>AAG	p.Q80K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.Q80K|PCDHA6_uc011dab.1_Missense_Mutation_p.Q80K	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	80	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTAAATCTGCAGAATGGCAT	0.632													29	238					7.61001e-30	1.11136e-29	0.005524	1	0
PCDHA7	56141	broad.mit.edu	37	5	140214425	140214425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140214425C>T	uc003lhq.2	+	1	457	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.P153S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCGGTTTCCACTAGAGGG	0.557													32	29					0	0	0.004289	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228404	140228404	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140228404G>A	uc003lhu.2	+	1	1048	c.324G>A	c.(322-324)GTG>GTA	p.V108V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.V108V	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	108	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGGAGGTGATCGTAGACA	0.542													38	240					0	0	0.001951	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230469	140230469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140230469G>A	uc003lhu.2	+	1	3113	c.2389G>A	c.(2389-2391)GGG>AGG	p.G797R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.G797R	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	797	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATTCAACTGGGAAGGTGGG	0.423													48	26					0	0	0.003610	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235949	140235949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140235949G>A	uc003lhx.2	+	1	316	c.316G>A	c.(316-318)GAG>AAG	p.E106K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.E106K|PCDHA10_uc011dad.1_Missense_Mutation_p.E106K	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	106	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCACCTGGAGGTGATCGT	0.542													32	207					0	0	0.002836	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250642	140250642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140250642G>A	uc003lia.2	+	1	2812	c.1954G>A	c.(1954-1956)GAT>AAT	p.D652N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D652N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	652	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGGTGAAGGATCACGGTGA	0.672													22	36					0	0	0.001523	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140308886	140308886	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140308886G>A	uc003lih.2	+	1	2585	c.2409G>A	c.(2407-2409)GGG>GGA	p.G803G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.G803G	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	803	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATAGGAAAGGGGATCACGCTA	0.448													86	24					0	0	0.003610	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347257	140347257	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140347257C>T	uc003lii.2	+	1	1146	c.906C>T	c.(904-906)GAC>GAT	p.D302D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Silent_p.D302D	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	302	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACGTCGGACCGGGAGAGGC	0.572													5	24					0	0	0.001168	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140362134	140362134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140362134C>T	uc003lii.2	+	3	2939	c.2699C>T	c.(2698-2700)TCC>TTC	p.S900F	PCDHA1_uc003lha.2_Missense_Mutation_p.S579F|PCDHA1_uc003lhb.2_Missense_Mutation_p.S843F|PCDHA2_uc003lhd.2_Missense_Mutation_p.S841F|PCDHA3_uc003lhf.2_Missense_Mutation_p.S843F|PCDHA4_uc003lhi.2_Missense_Mutation_p.S840F|PCDHA4_uc003lhh.1_Missense_Mutation_p.S840F|PCDHA5_uc003lhk.1_Missense_Mutation_p.S829F|PCDHA5_uc003lhl.2_Missense_Mutation_p.S829F|PCDHA6_uc003lhn.2_Missense_Mutation_p.S579F|PCDHA6_uc003lho.2_Missense_Mutation_p.S843F|PCDHA7_uc003lhq.2_Missense_Mutation_p.S830F|PCDHA8_uc003lhs.2_Missense_Mutation_p.S843F|PCDHA9_uc003lhu.2_Missense_Mutation_p.S843F|PCDHA10_uc003lhw.2_Missense_Mutation_p.S578F|PCDHA10_uc003lhx.2_Missense_Mutation_p.S841F|PCDHA11_uc003lia.2_Missense_Mutation_p.S842F|PCDHA12_uc003lic.2_Missense_Mutation_p.S834F|PCDHA13_uc003lie.1_Missense_Mutation_p.S843F|PCDHA13_uc003lif.2_Missense_Mutation_p.S843F|PCDHAC1_uc003lih.2_Missense_Mutation_p.S856F	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	900	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAACAGTATCCAGTGCAACA	0.493													8	41					0	0	0.004482	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474497	140474497	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140474497G>A	uc003lil.2	+	1	261	c.123G>A	c.(121-123)ACG>ACA	p.T41T	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	41	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGAGGAAACGGAGAGTGGCT	0.507													11	57					0	0	0.001368	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481302	140481302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140481302C>T	uc003lio.2	+	1	1069	c.1069C>T	c.(1069-1071)CCT>TCT	p.P357S	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	357	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGCCCTATTCCTGAGAACTC	0.493													14	52					0	0	0.002450	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515442	140515442	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140515442C>T	uc003liq.2	+	1	643	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	142	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTAAAAATCCCAGAGAGCA	0.438													38	64					0	0	0.007835	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553298	140553298	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140553298C>T	uc003lit.2	+	1	1056	c.882C>T	c.(880-882)ATC>ATT	p.I294I		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	294	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTTTCAAATCAATCCAACAT	0.423													15	79					0	0	0.002450	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553440	140553440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140553440G>A	uc003lit.2	+	1	1198	c.1024G>A	c.(1024-1026)GAT>AAT	p.D342N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	342	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGATATAAACGATAATCGACC	0.448													8	37					0	0	0.003080	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559563	140559563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140559563G>A	uc011dai.1	+	1	2134	c.1948G>A	c.(1948-1950)GAG>AAG	p.E650K	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	650	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACAATGGCGAGCCTCCGTG	0.706													30	20					0	0	0.002222	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580830	140580830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140580830G>A	uc003liy.2	+	1	1483	c.1483G>A	c.(1483-1485)GAC>AAC	p.D495N	PCDHB11_uc011daj.1_Missense_Mutation_p.D130N	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	495	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCGCCCCAGGACCTGCACCT	0.637													75	115					0	0	0.003610	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590025	140590025	+	Missense_Mutation	SNP	C	T	T	rs141554375		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140590025C>T	uc003liz.2	+	1	1735	c.1546C>T	c.(1546-1548)CTC>TTC	p.L516F	PCDHB12_uc011dak.1_Missense_Mutation_p.L179F	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	516	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGTTTGCCCTCAGGTCGCT	0.687													68	81					0	0	0.003610	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590527	140590527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140590527C>T	uc003liz.2	+	1	2237	c.2048C>T	c.(2047-2049)GCC>GTC	p.A683V	PCDHB12_uc011dak.1_Missense_Mutation_p.A346V|PCDHB13_uc003lja.1_5'Flank	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	683	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGGCCCAGGCCGACTCGCTC	0.706													96	61					0	0	0.003610	0	0
PCDHB14	56122	broad.mit.edu	37	5	140604586	140604586	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140604586G>A	uc003ljb.2	+	1	1509	c.1509G>A	c.(1507-1509)TTG>TTA	p.L503L	PCDHB14_uc011dal.1_Silent_p.L350L	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	503	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCGCCTCCTTGGTCTCCATCA	0.657													22	159					0	0	0.004656	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616170	140616170	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140616170C>T	uc003ljc.1	+	1	2233	c.1885C>T	c.(1885-1887)CAG>TAG	p.Q629*		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						CTCCCAGGCCCAGGCCGACTC	0.692													18	102					0	0	0.007413	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616219	140616219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140616219C>T	uc003ljc.1	+	1	2282	c.1934C>T	c.(1933-1935)TCG>TTG	p.S645L		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCCTCGGTGTCGTCGCTCTTC	0.687													30	157					0	0	0.002836	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625680	140625680	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140625680C>T	uc003lje.2	+	1	534	c.534C>T	c.(532-534)TTC>TTT	p.F178F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	178	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCTCATTTCCATGTTTCCA	0.507													7	29					0	0	0.001984	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711742	140711742	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140711742G>T	uc003lji.1	+	1	1491	c.1491G>T	c.(1489-1491)CAG>CAT	p.Q497H	PCDHGA1_uc011dan.1_Missense_Mutation_p.Q497H	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	497	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACTATCCAGGGGGCACCCC	0.542													7	135					0.00307968	0.00441594	0.003080	1	0
PCDHGA2	56113	broad.mit.edu	37	5	140718610	140718610	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140718610G>A	uc003ljk.1	+	1	257	c.72G>A	c.(70-72)TGG>TGA	p.W24*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Nonsense_Mutation_p.W24*	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	24					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACCCTGTGGGAGGCCAGGG	0.582											OREG0016854	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	40					0	0	0.003330	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718902	140718902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140718902G>A	uc003ljk.1	+	1	549	c.364G>A	c.(364-366)GAA>AAA	p.E122K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.E122K	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	122	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTAGAGGTGGAAATAACAGA	0.448													33	33					0	0	0.002096	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140732088	140732088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140732088C>T	uc003ljo.1	+	1	2261	c.2261C>T	c.(2260-2262)TCT>TTT	p.S754F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.S754F|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	754	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTATTGCCTCTCATTCTGCA	0.517													21	67					0	0	0.001523	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140740132	140740132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140740132G>A	uc003ljs.1	+	1	430	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc011dar.1_Missense_Mutation_p.E144K	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	144	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAATTGGCGAATCCACTAA	0.368													19	55					0	0	0.001882	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745253	140745253	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140745253C>T	uc003lju.1	+	1	1356	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.F452F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	452	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCCAATTTCCCTCAAGCCT	0.522													27	138					0	0	0.005443	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745589	140745589	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140745589C>T	uc003lju.1	+	1	1692	c.1692C>T	c.(1690-1692)TAC>TAT	p.Y564Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.Y564Y	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	564	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGATCCTGTACCCCGCCCTCC	0.617													39	142					0	0	0.002222	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764449	140764449	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140764449C>T	uc003lka.1	+	1	1983	c.1983C>T	c.(1981-1983)ACC>ACT	p.T661T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.T661T	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	661	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCACACTCACCGTGGCTGTGG	0.642													9	36					0	0	0.006214	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772572	140772572	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140772572C>T	uc003lkd.1	+	1	1090	c.192C>T	c.(190-192)GTC>GTT	p.V64V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.V64V	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	64	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCACGGAGTCCGTATCGTCT	0.612													45	21					0	0	0.003610	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140783812	140783812	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140783812C>T	uc003lkh.1	+	1	1293	c.1293C>T	c.(1291-1293)CCC>CCT	p.P431P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.P431P	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	431	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAACTCCGCCCCTGTCCACAG	0.453													29	7					0	0	0.001786	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784766	140784766	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140784766C>T	uc003lkh.1	+	1	2247	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.F749F	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGAGCTTTCCTACAGACCT	0.567													53	32					0	0	0.003610	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812225	140812225	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140812225G>A	uc003lkt.1	+	1	2068	c.1899G>A	c.(1897-1899)CTG>CTA	p.L633L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.L633L	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	633	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCCTGCTGGACAGAGACG	0.692													23	89					0	0	0.002299	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812288	140812288	+	Silent	SNP	C	T	T	rs13360857		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140812288C>T	uc003lkt.1	+	1	2131	c.1962C>T	c.(1960-1962)CTC>CTT	p.L654L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Silent_p.L654L	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	654	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCCCCTCTCTCCGCCACTG	0.682													22	101					0	0	0.001882	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140869593	140869593	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140869593C>T	uc003lla.1	+	1	786	c.786C>T	c.(784-786)CTC>CTT	p.L262L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Silent_p.L262L	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	262	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTGCTGCTCCGCCTCAATG	0.522													96	89					0	0	0.003610	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870620	140870620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:140870620C>T	uc003lla.1	+	1	1813	c.1813C>T	c.(1813-1815)CTC>TTC	p.L605F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Missense_Mutation_p.L605F	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	605	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATGCGTGGCTCTCCTACTC	0.617													31	17					0	0	0.003271	0	0
ARAP3	64411	broad.mit.edu	37	5	141051852	141051852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:141051852C>T	uc003llm.2	-	10	1480	c.1402G>A	c.(1402-1404)GGG>AGG	p.G468R	ARAP3_uc011dbe.1_Missense_Mutation_p.G130R|ARAP3_uc003lln.2_Missense_Mutation_p.G390R|ARAP3_uc003llo.1_Missense_Mutation_p.G468R	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	468	PH 2.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CGAGCACCCCCAGACTCGGCT	0.627													12	63					0	0	0.001855	0	0
PCDH12	51294	broad.mit.edu	37	5	141324995	141324995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:141324995C>T	uc003llx.2	-	4	4717	c.3506G>A	c.(3505-3507)GGG>GAG	p.G1169E		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	1169	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCTCAGTCCCCGTCTTTCC	0.532													10	11					0	0	0.000978	0	0
PCDH12	51294	broad.mit.edu	37	5	141334755	141334755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:141334755C>T	uc003llx.2	-	1	3873	c.2662G>A	c.(2662-2664)GGG>AGG	p.G888R		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	888	Cytoplasmic (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAGCCTCCCTGTGGGGCTG	0.647													16	23					0	0	0.006122	0	0
POU4F3	5459	broad.mit.edu	37	5	145719773	145719773	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:145719773G>A	uc003loa.2	+	2	872	c.783G>A	c.(781-783)GAG>GAA	p.E261E		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	261					sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTACCGAGAGAAGAACAGCA	0.602													13	53					0	0	0.001368	0	0
SH3TC2	79628	broad.mit.edu	37	5	148408018	148408018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:148408018C>T	uc003lpu.2	-	11	1429	c.1277G>A	c.(1276-1278)AGC>AAC	p.S426N	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_Missense_Mutation_p.S70N|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.S419N|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Missense_Mutation_p.S311N	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	426							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCTCCAGGCTGGAGTCCTC	0.622													9	73					0	0	0.004482	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148743657	148743657	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:148743657C>T	uc003lqk.2	+	3	416	c.354C>T	c.(352-354)TTC>TTT	p.F118F	PCYOX1L_uc003lql.2_Silent_p.F101F|PCYOX1L_uc010jgz.2_Silent_p.F101F|PCYOX1L_uc003lqm.2_5'UTR|PCYOX1L_uc003lqn.2_Silent_p.F28F	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	118					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAGCACTTCATGCTGGAGG	0.627													30	36					0	0	0.001786	0	0
IL17B	27190	broad.mit.edu	37	5	148754100	148754100	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:148754100G>A	uc003lqo.2	-	3	425	c.375C>T	c.(373-375)GGC>GGT	p.G125G		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	125					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTCACACAGCCCAGACACA	0.667													39	17					0	0	0.002222	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149216017	149216017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:149216017C>T	uc003lrc.2	+	8	2041	c.1999C>T	c.(1999-2001)CAC>TAC	p.H667Y	PPARGC1B_uc003lrb.1_Missense_Mutation_p.H667Y|PPARGC1B_uc003lrd.2_Missense_Mutation_p.H628Y|PPARGC1B_uc003lrf.2_Missense_Mutation_p.H646Y|PPARGC1B_uc003lre.1_Missense_Mutation_p.H646Y	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	667					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GCTCCTGTCCCACCTGCGACA	0.642													15	76					0	0	0.002450	0	0
CSF1R	1436	broad.mit.edu	37	5	149459766	149459766	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:149459766G>A	uc003lrl.2	-	3	636	c.441C>T	c.(439-441)CCC>CCT	p.P147P	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.P147P|CSF1R_uc011dce.1_Silent_p.P147P|CSF1R_uc011dcf.1_Silent_p.P147P	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	147	Extracellular (Potential).|Ig-like C2-type 2.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	GGCGCATGAGGGGCCGGCCAC	0.617													4	47					0	0	0.000602	0	0
CAMK2A	815	broad.mit.edu	37	5	149602733	149602733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:149602733G>A	uc003lru.2	-	17	1467	c.1252C>T	c.(1252-1254)CAC>TAC	p.H418Y	CAMK2A_uc003lrs.2_Missense_Mutation_p.H129Y|CAMK2A_uc003lrt.2_Missense_Mutation_p.H429Y	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	418					interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTGGATGTGGGGATTCAGG	0.652													9	71					0	0	0.000978	0	0
CD74	972	broad.mit.edu	37	5	149792262	149792262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:149792262C>T	uc003lsc.2	-	1	62	c.51G>A	c.(49-51)ATG>ATA	p.M17I	CD74_uc003lse.2_Missense_Mutation_p.M17I|CD74_uc003lsd.2_Missense_Mutation_p.M17I|CD74_uc003lsf.1_Missense_Mutation_p.M17I	NM_001025159	NP_001020330	P04233	HG2A_HUMAN	CD74 antigen isoform a	17	Cytoplasmic (Potential).				antigen processing and presentation of endogenous antigen|cell proliferation|immunoglobulin mediated immune response|intracellular protein transport|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of peptide secretion|positive regulation of B cell proliferation|positive regulation of chemokine (C-X-C motif) ligand 2 production|positive regulation of cytokine-mediated signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of macrophage cytokine production|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|prostaglandin biosynthetic process|protein complex assembly|regulation of macrophage activation	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|lysosome|receptor complex	beta-amyloid binding|cytokine receptor activity|identical protein binding|MHC class II protein binding			breast(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCTGGTCATCCATGACTGGCT	0.617			T	ROS1	NSCLC								36	181					0	0	0.002222	0	0
RPS14	6208	broad.mit.edu	37	5	149826385	149826385	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:149826385G>A	uc003lsh.2	-	3	564	c.291C>T	c.(289-291)CTC>CTT	p.L97L	uc003lsg.2_5'Flank|RPS14_uc003lsi.2_Silent_p.L97L|RPS14_uc003lsj.2_Silent_p.L97L	NM_001025071	NP_001020242	P62263	RS14_HUMAN	ribosomal protein S14	97					endocrine pancreas development|erythrocyte differentiation|maturation of SSU-rRNA|negative regulation of transcription from RNA polymerase II promoter|ribosomal small subunit assembly|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	mRNA 5'-UTR binding|protein binding|structural constituent of ribosome|translation regulator activity			central_nervous_system(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGTGGCCCGGAGTTTGATGT	0.572													11	73					0	0	0.000978	0	0
RBM22	55696	broad.mit.edu	37	5	150072586	150072586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:150072586G>A	uc003lst.2	-	10	1125	c.1003C>T	c.(1003-1005)CTT>TTT	p.L335F		NM_018047	NP_060517	Q9NW64	RBM22_HUMAN	RNA binding motif protein 22	335	Pro-rich.				protein import into nucleus, translocation	catalytic step 2 spliceosome|cytoplasm	calcium-dependent protein binding|nucleotide binding|RNA binding|zinc ion binding				0		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGAGGAGGAAGAGCTGGAGGA	0.517													19	46					0	0	0.002780	0	0
ZNF300	91975	broad.mit.edu	37	5	150275551	150275551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:150275551G>A	uc003lsy.1	-	6	1517	c.1250C>T	c.(1249-1251)GCC>GTC	p.A417V	IRGM_uc011dcl.1_Intron	NM_052860	NP_443092	Q96RE9	ZN300_HUMAN	zinc finger protein 300	417	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		Medulloblastoma(196;0.109)|all_hematologic(541;0.131)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTCACAGAAGGCTTTCCCACA	0.463													35	20					0	0	0.003271	0	0
SLC36A1	206358	broad.mit.edu	37	5	150867587	150867587	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:150867587C>T	uc003luc.2	+	11	1420	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	GM2A_uc011dcs.1_Intron	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	401	Helical; Name=10; (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	TGGTCATCTCCCTGGTGGGCT	0.617													37	16					0	0	0.002222	0	0
FAT2	2196	broad.mit.edu	37	5	150901330	150901331	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:150901330_150901331GG>AT	uc003lue.3	-	18	10836_10837	c.10823_10824CC>AT	c.(10822-10824)ACC>AAT	p.T3608N	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.T301N	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3608	Cadherin 32.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCGTGGTGAAGGTCCCATCGCT	0.634													10	30					0	0	0.004672	0	0
FAT2	2196	broad.mit.edu	37	5	150946879	150946879	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:150946879C>T	uc003lue.3	-	1	1627	c.1614G>A	c.(1612-1614)TGG>TGA	p.W538*	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Nonsense_Mutation_p.W538*	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	538	Cadherin 4.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAGGGGATCCCCAGTCTGATG	0.463													81	27					0	0	0.003610	0	0
GRIA1	2890	broad.mit.edu	37	5	153029980	153029980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:153029980G>A	uc003lva.3	+	4	916	c.551G>A	c.(550-552)GGA>GAA	p.G184E	GRIA1_uc003luy.3_Missense_Mutation_p.G184E|GRIA1_uc003luz.3_Missense_Mutation_p.G89E|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G104E|GRIA1_uc011dcx.1_Missense_Mutation_p.G115E|GRIA1_uc011dcy.1_Missense_Mutation_p.G194E|GRIA1_uc011dcz.1_Missense_Mutation_p.G194E|GRIA1_uc010jia.1_Missense_Mutation_p.G164E	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	184	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	ACAGAGGAGGGATACCGGATG	0.512													20	85					0	0	0.002299	0	0
MFAP3	4238	broad.mit.edu	37	5	153433112	153433112	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:153433112C>T	uc003lvf.2	+	3	1444	c.928C>T	c.(928-930)CAG>TAG	p.Q310*	MFAP3_uc010jib.2_Nonsense_Mutation_p.Q310*|MFAP3_uc011ddb.1_Nonsense_Mutation_p.Q164*	NM_001135037	NP_001128509	P55082	MFAP3_HUMAN	microfibrillar-associated protein 3 isoform 2	310	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	Renal(175;0.00488)	Lung NSC(249;0.00145)|all_lung(500;0.00226)|all_neural(177;0.122)|Breast(839;0.14)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;9.69e-06)|GBM - Glioblastoma multiforme(465;0.0201)		TGAACAAGGCCAGGAAATAGC	0.448													15	62					0	0	0.004007	0	0
GEMIN5	25929	broad.mit.edu	37	5	154307058	154307058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:154307058G>A	uc003lvx.3	-	7	1050	c.967C>T	c.(967-969)CTC>TTC	p.L323F	GEMIN5_uc011ddk.1_Missense_Mutation_p.L322F	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	323					ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GCACTGAAGAGGGTGTATTTC	0.373													34	36					0	0	0.005524	0	0
GEMIN5	25929	broad.mit.edu	37	5	154311045	154311045	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:154311045G>A	uc003lvx.3	-	5	837	c.754C>T	c.(754-756)CGA>TGA	p.R252*	GEMIN5_uc011ddk.1_Nonsense_Mutation_p.R251*	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	252	WD 4.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CTCCAGATTCGAATGGTTTGA	0.418													6	55					0	0	0.003080	0	0
KIF4B	285643	broad.mit.edu	37	5	154394966	154394966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:154394966C>T	uc010jih.1	+	1	1707	c.1547C>T	c.(1546-1548)GCT>GTT	p.A516V		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	516	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACTCAGCATGCTCTCCATCAA	0.493													35	47					0	0	0.005524	0	0
TIMD4	91937	broad.mit.edu	37	5	156347490	156347490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156347490G>A	uc003lwh.2	-	8	1094	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	TIMD4_uc010jii.2_Missense_Mutation_p.S318L|TIMD4_uc003lwg.2_Missense_Mutation_p.S48L	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	346	Cytoplasmic (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTGTTTCTGCGAACAATAGGT	0.423													80	476					0	0	0.003610	0	0
TIMD4	91937	broad.mit.edu	37	5	156376728	156376728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156376728G>A	uc003lwh.2	-	4	751	c.694C>T	c.(694-696)CTC>TTC	p.L232F	TIMD4_uc010jii.2_Missense_Mutation_p.L232F	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	232	Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCACTGGGGAGGACAGTTTCT	0.453													31	205					0	0	0.002836	0	0
TIMD4	91937	broad.mit.edu	37	5	156381595	156381596	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156381595_156381596GG>AA	uc003lwh.2	-	2	287_288	c.230_231CC>TT	c.(229-231)ACC>ATT	p.T77I	TIMD4_uc010jii.2_Missense_Mutation_p.T77I	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	77	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ACTTTCTTGAGGTCACCCTCAT	0.525													106	523					0	0	0.004672	0	0
ITK	3702	broad.mit.edu	37	5	156671372	156671372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156671372G>A	uc003lwo.1	+	13	1415	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	445	Protein kinase.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGCCTGTCAGATTATCTACG	0.572			T	SYK	peripheral T-cell lymphoma								97	438					0	0	0.003610	0	0
CYFIP2	26999	broad.mit.edu	37	5	156810362	156810362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156810362C>T	uc003lwq.2	+	30	3340	c.3202C>T	c.(3202-3204)CCT>TCT	p.P1068S	CYFIP2_uc011ddn.1_Missense_Mutation_p.P1042S|CYFIP2_uc011ddo.1_Missense_Mutation_p.P872S|CYFIP2_uc003lwr.2_Missense_Mutation_p.P1068S|CYFIP2_uc003lws.2_Missense_Mutation_p.P1068S|CYFIP2_uc003lwt.2_Missense_Mutation_p.P971S|CYFIP2_uc011ddp.1_Missense_Mutation_p.P802S|CYFIP2_uc003lwv.2_Missense_Mutation_p.P23S	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1093					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCTGGGGACCCCTCAGGTACC	0.393													39	280					0	0	0.002222	0	0
ADAM19	8728	broad.mit.edu	37	5	156946919	156946919	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:156946919G>A	uc003lwz.2	-	6	592	c.528C>T	c.(526-528)TTC>TTT	p.F176F	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_Silent_p.F107F	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	176					proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGAGTGCTCGAACCCACAGT	0.557													17	145					0	0	0.004990	0	0
SOX30	11063	broad.mit.edu	37	5	157078476	157078476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:157078476G>A	uc003lxb.1	-	1	953	c.611C>T	c.(610-612)CCG>CTG	p.P204L	SOX30_uc003lxc.1_Missense_Mutation_p.P204L|SOX30_uc011dds.1_Intron	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	204					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GATGGCTGCCGGGCTTTTGCC	0.657													27	112					0	0	0.002096	0	0
THG1L	54974	broad.mit.edu	37	5	157161590	157161590	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:157161590C>T	uc003lxd.2	+	3	501	c.375C>T	c.(373-375)TTC>TTT	p.F125F	THG1L_uc011ddu.1_Intron	NM_017872	NP_060342	Q9NWX6	THG1_HUMAN	interphase cytoplasmic foci protein 45	125					protein homotetramerization|tRNA modification	mitochondrion	GTP binding|metal ion binding|tRNA guanylyltransferase activity				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAAGTAAGTTCATGACTCACG	0.458													45	155					0	0	0.003610	0	0
GABRA6	2559	broad.mit.edu	37	5	161116303	161116303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:161116303C>T	uc003lyu.2	+	5	828	c.490C>T	c.(490-492)CCT>TCT	p.P164S	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	164	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGTTAACTTTCCTATGGATGG	0.388										TCGA Ovarian(5;0.080)			16	77					0	0	0.001216	0	0
ODZ2	57451	broad.mit.edu	37	5	167420138	167420138	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:167420138C>T	uc010jjd.2	+	5	1137	c.1137C>T	c.(1135-1137)TCC>TCT	p.S379S	ODZ2_uc003lzq.2_Silent_p.S258S|ODZ2_uc003lzr.3_Silent_p.S188S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTGCCCTCTCCGCCATTGCCG	0.572													10	81					0	0	0.000978	0	0
ODZ2	57451	broad.mit.edu	37	5	167553802	167553802	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:167553802G>A	uc010jjd.2	+	12	2253	c.2253G>A	c.(2251-2253)GGG>GGA	p.G751G	ODZ2_uc003lzr.3_Silent_p.G519G|ODZ2_uc003lzt.3_Silent_p.G115G|ODZ2_uc010jje.2_Silent_p.G22G|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCTGCATCGGGGGAGCCTGCC	0.572													6	14					0	0	0.004482	0	0
WWC1	23286	broad.mit.edu	37	5	167812347	167812347	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:167812347C>T	uc003lzu.2	+	3	454	c.361C>T	c.(361-363)CTG>TTG	p.L121L	WWC1_uc003lzv.2_Silent_p.L121L|WWC1_uc011den.1_Silent_p.L121L	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	121	Potential.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		GCAGCAGCGCCTGGAGCTTGC	0.597													9	56					0	0	0.006214	0	0
RARS	5917	broad.mit.edu	37	5	167920929	167920929	+	Missense_Mutation	SNP	C	T	T	rs145783542		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:167920929C>T	uc003lzx.2	+	4	441	c.400C>T	c.(400-402)CCA>TCA	p.P134S	RARS_uc011deo.1_Intron	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	134					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		GAAAGTTAATCCAAGAGAAAT	0.358													9	49					0	0	0.001855	0	0
DOCK2	1794	broad.mit.edu	37	5	169081436	169081436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169081436C>T	uc003maf.2	+	2	153	c.73C>T	c.(73-75)CCC>TCC	p.P25S	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	25	SH3.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAGCGGAGCCCCCCAGCTCTC	0.557													31	23					0	0	0.003755	0	0
DOCK2	1794	broad.mit.edu	37	5	169096332	169096332	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169096332G>A	uc003maf.2	+	3	248	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	56	SH3.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAATGTTACAGGTAAGGTCAC	0.423													85	45					0	0	0.003610	0	0
DOCK2	1794	broad.mit.edu	37	5	169506038	169506038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169506038C>T	uc003maf.2	+	49	5134	c.5054C>T	c.(5053-5055)TCC>TTC	p.S1685F	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.S1177F|DOCK2_uc003mah.2_Missense_Mutation_p.S241F	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1685					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAACCGATCTCCCCGGGGAGC	0.557													53	78					0	0	0.003610	0	0
FOXI1	2299	broad.mit.edu	37	5	169535234	169535234	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169535234G>A	uc003mai.3	+	2	801	c.756G>A	c.(754-756)TTG>TTA	p.L252L	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	252					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGACATCTTGGATGGAGCCT	0.597									Pendred_syndrome				29	40					0	0	0.001512	0	0
FOXI1	2299	broad.mit.edu	37	5	169535329	169535329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169535329C>T	uc003mai.3	+	2	896	c.851C>T	c.(850-852)TCT>TTT	p.S284F	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	284					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTCCTTTCCTCTATGACAGCC	0.637									Pendred_syndrome				17	68					0	0	0.007413	0	0
LCP2	3937	broad.mit.edu	37	5	169677741	169677741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:169677741C>T	uc003man.1	-	20	1679	c.1472G>A	c.(1471-1473)GGG>GAG	p.G491E	C5orf58_uc003mal.2_Intron|LCP2_uc011des.1_Missense_Mutation_p.G286E|LCP2_uc011det.1_Missense_Mutation_p.G320E	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	491	SH2.				immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		TACCTCTTTCCCTCGGAGTCC	0.413													19	72					0	0	0.001882	0	0
RANBP17	64901	broad.mit.edu	37	5	170667972	170667972	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:170667972G>A	uc003mba.2	+	23	2479	c.2463G>A	c.(2461-2463)CAG>CAA	p.Q821Q	RANBP17_uc003mbb.2_Silent_p.Q146Q|RANBP17_uc003mbd.2_Silent_p.Q184Q|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	821					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAAAAGATCAGATTTATCCAA	0.413			T	TRD@	ALL								22	158					0	0	0.002299	0	0
NPM1	4869	broad.mit.edu	37	5	170818768	170818768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:170818768C>T	uc011dex.1	+	5	452	c.317C>T	c.(316-318)TCA>TTA	p.S106L	NPM1_uc003mbh.2_Missense_Mutation_p.S106L|NPM1_uc003mbi.2_Missense_Mutation_p.S106L|NPM1_uc003mbj.2_Missense_Mutation_p.S106L	NM_002520	NP_002511	P06748	NPM_HUMAN	nucleophosmin 1 isoform 1	106	Necessary for interaction with APEX1.|Required for interaction with SENP3.				anti-apoptosis|cell aging|CenH3-containing nucleosome assembly at centromere|centrosome cycle|DNA repair|interspecies interaction between organisms|intracellular protein transport|negative regulation of cell proliferation|negative regulation of centrosome duplication|nucleocytoplasmic transport|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|regulation of endodeoxyribonuclease activity|regulation of endoribonuclease activity|ribosome assembly|signal transduction	nucleolus|nucleoplasm|ribonucleoprotein complex|spindle pole centrosome	histone binding|NF-kappaB binding|protein binding|protein heterodimerization activity|protein homodimerization activity|ribosomal large subunit binding|ribosomal small subunit binding|RNA binding|Tat protein binding|transcription coactivator activity|unfolded protein binding		NPM1/ALK(632)	haematopoietic_and_lymphoid_tissue(3109)|skin(1)	3110	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AAGTGTGGTTCAGGGCCAGTG	0.393			T|F 	ALK|RARA|MLF1	NHL|APL|AML								64	30					0	0	0.003610	0	0
CPEB4	80315	broad.mit.edu	37	5	173372032	173372032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:173372032C>T	uc003mcs.3	+	5	2751	c.1345C>T	c.(1345-1347)CTT>TTT	p.L449F	CPEB4_uc010jju.1_Missense_Mutation_p.L424F|CPEB4_uc010jjv.2_Missense_Mutation_p.L432F|CPEB4_uc011dfg.1_Missense_Mutation_p.L424F|CPEB4_uc003mct.3_Missense_Mutation_p.L59F|CPEB4_uc003mcu.3_Missense_Mutation_p.L42F	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	449							nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGATCAGCCTCTTCATAGTGG	0.478													38	85					0	0	0.005524	0	0
CDHR2	54825	broad.mit.edu	37	5	176003066	176003066	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176003066C>T	uc003mem.1	+	12	1140	c.1074C>T	c.(1072-1074)CTC>CTT	p.L358L	CDHR2_uc003men.1_Silent_p.L358L	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	358	Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ACTGCAGCCTCCCAGCCTGCA	0.577													41	19					0	0	0.001951	0	0
CDHR2	54825	broad.mit.edu	37	5	176011703	176011704	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176011703_176011704CC>TT	uc003mem.1	+	19	2487_2488	c.2421_2422CC>TT	c.(2419-2424)ACCCTG>ACTTTG	p.807_808TL>TL	CDHR2_uc003men.1_Silent_p.807_808TL>TL	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	807_808	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						ATCCCCCCACCCTGGATGTAGC	0.594													20	117					0	0	0.004672	0	0
CDHR2	54825	broad.mit.edu	37	5	176019740	176019740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176019740G>A	uc003mem.1	+	31	3817	c.3751G>A	c.(3751-3753)GAC>AAC	p.D1251N	CDHR2_uc003men.1_Missense_Mutation_p.D1251N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	1251	Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						CTCCCTGGACGACAACTCTGT	0.483													74	17					0	0	0.003610	0	0
GPRIN1	114787	broad.mit.edu	37	5	176025676	176025676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176025676G>A	uc003meo.1	-	2	1335	c.1160C>T	c.(1159-1161)CCT>CTT	p.P387L		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	387						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCAGACACAGGACGCCCCTC	0.527													8	62					0	0	0.006214	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026791	176026791	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176026791C>T	uc003meo.1	-	2	220	c.45G>A	c.(43-45)AAG>AAA	p.K15K		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	15						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCTGGAATCCTTTTGAAGCA	0.627													6	40					0	0	0.001984	0	0
UNC5A	90249	broad.mit.edu	37	5	176306753	176306754	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176306753_176306754CC>TA	uc003mey.2	+	15	2587_2588	c.2395_2396CC>TA	c.(2395-2397)CCC>TAC	p.P799Y		NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	799	Death.|Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAAGCCCAGCCCCACAGCCATG	0.693													11	51					0	0	0.004672	0	0
FGFR4	2264	broad.mit.edu	37	5	176520541	176520541	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176520541C>T	uc003mfl.2	+	10	1553	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	FGFR4_uc003mfm.2_Silent_p.F462F|FGFR4_uc011dfu.1_Intron|FGFR4_uc003mfo.2_Silent_p.F422F	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	462	Cytoplasmic (Potential).				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	TATGGGAGTTCCCCCGGGACA	0.687										TSP Lung(9;0.080)			51	29					0	0	0.003610	0	0
SLC34A1	6569	broad.mit.edu	37	5	176813035	176813035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176813035G>A	uc003mgk.3	+	3	258	c.157G>A	c.(157-159)GGC>AGC	p.G53S		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	53	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCCAGCCTGGGCCCTGTGGC	0.687													13	68					0	0	0.002450	0	0
SLC34A1	6569	broad.mit.edu	37	5	176821091	176821091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176821091G>A	uc003mgk.3	+	10	1170	c.1069G>A	c.(1069-1071)GGA>AGA	p.G357R		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	357	Helical; Name=M4; (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCTGCTGGCAGGATCCCTGGT	0.602													38	218					0	0	0.002852	0	0
DOK3	79930	broad.mit.edu	37	5	176931115	176931115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176931115G>A	uc003mhk.2	-	6	1365	c.1360C>T	c.(1360-1362)CGG>TGG	p.R454W	DOK3_uc003mhh.3_Intron|DOK3_uc003mhi.3_Intron|DOK3_uc003mhj.3_Intron|DOK3_uc003mhl.2_Missense_Mutation_p.R398W	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	454	Pro-rich.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			AGCAGCCGCCGGTACTGGGCC	0.682													18	5					0	0	0.001216	0	0
DDX41	51428	broad.mit.edu	37	5	176939113	176939113	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:176939113G>A	uc003mho.2	-	16	1737	c.1716C>T	c.(1714-1716)TCC>TCT	p.S572S	DOK3_uc003mhi.3_5'Flank|DOK3_uc003mhj.3_5'Flank|DOK3_uc003mhk.2_5'Flank|DOK3_uc003mhl.2_5'Flank|DDX41_uc003mhm.2_Silent_p.S352S|DDX41_uc003mhn.2_Silent_p.S441S|DDX41_uc003mhp.2_Silent_p.S441S	NM_016222	NP_057306	Q9UJV9	DDX41_HUMAN	DEAD-box protein abstrakt	572					apoptosis|multicellular organismal development	catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|zinc ion binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			TGTCCAGCATGGACTCATCCC	0.617													48	23					0	0	0.003610	0	0
N4BP3	23138	broad.mit.edu	37	5	177546597	177546597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:177546597C>T	uc003mik.1	+	2	260	c.13C>T	c.(13-15)CCA>TCA	p.P5S	N4BP3_uc003mil.1_5'Flank	NM_015111	NP_055926	O15049	N4BP3_HUMAN	Nedd4 binding protein 3	5						cytoplasmic vesicle membrane					0	all_cancers(89;0.00294)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCACAGCCCCAGGCCCTGC	0.642													44	17					0	0	0.003610	0	0
COL23A1	91522	broad.mit.edu	37	5	177675236	177675236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:177675236C>T	uc003mje.2	-	20	1527	c.1169G>A	c.(1168-1170)GGG>GAG	p.G390E	COL23A1_uc010jkt.2_Missense_Mutation_p.G272E	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	390	Extracellular (Potential).|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		CCCCTTCTCCCCCTTGAGGCC	0.642													55	19					0	0	0.003610	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178552028	178552028	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:178552028C>T	uc003mjw.2	-	19	2904	c.2904G>A	c.(2902-2904)CGG>CGA	p.R968R		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	968	TSP type-1 3.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GGCTGCAGGCCCGGCGGCTCT	0.687													13	63					0	0	0.003163	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178553072	178553072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:178553072C>T	uc003mjw.2	-	18	2677	c.2677G>A	c.(2677-2679)GGC>AGC	p.G893S		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	893	TSP type-1 2.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		GCACAGAAGCCACGGTGTACC	0.652													14	107					0	0	0.004007	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178580519	178580519	+	Silent	SNP	G	A	A	rs147438064	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:178580519G>A	uc003mjw.2	-	9	1488	c.1488C>T	c.(1486-1488)TTC>TTT	p.F496F	ADAMTS2_uc011dgm.1_Silent_p.F496F	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	496	Disintegrin.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		AGCCCAGGCCGAAGTCAAAGC	0.672													5	25					0	0	0.001168	0	0
FLT4	2324	broad.mit.edu	37	5	180047291	180047291	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:180047291G>A	uc003mma.3	-	17	2503	c.2424C>T	c.(2422-2424)ATC>ATT	p.I808I	FLT4_uc003mlz.3_Silent_p.I808I|FLT4_uc003mmb.1_Silent_p.I341I	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	808	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGCCCGTCTTGATGTCTGCGT	0.622									Congenital_Hereditary_Lymphedema				82	38					0	0	0.003610	0	0
FLT4	2324	broad.mit.edu	37	5	180048671	180048672	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:180048671_180048672CC>TT	uc003mma.3	-	13	1969_1970	c.1890_1891GG>AA	c.(1888-1893)GGGGCG>GGAACG	p.A631T	FLT4_uc003mlz.3_Missense_Mutation_p.A631T|FLT4_uc003mmb.1_Missense_Mutation_p.A164T|FLT4_uc011dgy.1_Missense_Mutation_p.A631T	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	631	Ig-like C2-type 6.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCGTGGCGCGCCCCAGGTGCCA	0.678									Congenital_Hereditary_Lymphedema				17	12					0	0	0.004672	0	0
BTNL8	79908	broad.mit.edu	37	5	180338607	180338607	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:180338607G>A	uc003mmp.2	+	3	900	c.666G>A	c.(664-666)CAG>CAA	p.Q222Q	BTNL8_uc003mmq.2_Silent_p.Q222Q|BTNL8_uc011dhg.1_Silent_p.Q97Q|BTNL8_uc010jll.2_Silent_p.Q222Q|BTNL8_uc010jlm.2_Silent_p.Q106Q|BTNL8_uc011dhh.1_Silent_p.Q38Q	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	222	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCAGGGTACAGATAGGAGGTG	0.547													14	56					0	0	0.002450	0	0
BTNL8	79908	broad.mit.edu	37	5	180377239	180377239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:180377239C>T	uc003mmp.2	+	8	1432	c.1198C>T	c.(1198-1200)CCC>TCC	p.P400S	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Missense_Mutation_p.P275S|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Missense_Mutation_p.P284S|BTNL8_uc011dhh.1_Missense_Mutation_p.P216S	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	400	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGCGTCTTCCCCAGGACCCC	0.463													53	29					0	0	0.003610	0	0
DUSP22	56940	broad.mit.edu	37	6	348772	348772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:348772C>T	uc003msx.2	+	7	878	c.439C>T	c.(439-441)CGG>TGG	p.R147W	DUSP22_uc011dhn.1_Missense_Mutation_p.R147W|DUSP22_uc003msy.1_Missense_Mutation_p.R104W	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	147					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		TCTCCAGTATCGGCAGTGGCT	0.517													38	106					0	0	0.002852	0	0
SERPINB6	5269	broad.mit.edu	37	6	2948542	2948542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:2948542G>A	uc003muk.2	-	6	3116	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F	SERPINB6_uc003mui.2_Missense_Mutation_p.S257F|SERPINB6_uc003muj.2_RNA|SERPINB6_uc003mul.2_Missense_Mutation_p.S374F|SERPINB6_uc003mum.2_Missense_Mutation_p.S374F|SERPINB6_uc003mun.2_Missense_Mutation_p.S374F|SERPINB6_uc003muo.2_Missense_Mutation_p.S374F	NM_004568	NP_004559	P35237	SPB6_HUMAN	serine (or cysteine) proteinase inhibitor, clade	374					regulation of proteolysis	centrosome|cytosol|protein complex	protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.0895)			Drotrecogin alfa(DB00055)	TCACGGAGAGGAAAAGCGGCC	0.602													11	60					0	0	0.000978	0	0
PRPF4B	8899	broad.mit.edu	37	6	4032432	4032432	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:4032432C>T	uc003mvv.2	+	2	772	c.681C>T	c.(679-681)TCC>TCT	p.S227S	PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	227	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				AAAGCCCATCCAAAAGAAGTA	0.388													193	78					0	0	0.003610	0	0
PRPF4B	8899	broad.mit.edu	37	6	4032706	4032706	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:4032706A>G	uc003mvv.2	+	2	1046	c.955A>G	c.(955-957)ACT>GCT	p.T319A	PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	319	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				ACGGTCTGAAACTGATAAAGA	0.413													86	43					0	0	0.003610	0	0
RREB1	6239	broad.mit.edu	37	6	7230453	7230453	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7230453C>T	uc003mxc.2	+	10	2511	c.2121C>T	c.(2119-2121)CCC>CCT	p.P707P	RREB1_uc003mxb.2_Silent_p.P707P|RREB1_uc010jnx.2_Silent_p.P707P	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	707	C2H2-type 9.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				GCCACTACCCCTTCACTGTCA	0.597													44	39					0	0	0.003610	0	0
CAGE1	285782	broad.mit.edu	37	6	7373578	7373578	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7373578G>A	uc003mxi.2	-	4	1787	c.1066C>T	c.(1066-1068)CAG>TAG	p.Q356*	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Nonsense_Mutation_p.Q247*|CAGE1_uc003mxk.1_Nonsense_Mutation_p.Q247*	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	492	Potential.										0	Ovarian(93;0.0418)					TCAAGTTTCTGGAATTCCTCC	0.378													21	16					0	0	0.001523	0	0
DSP	1832	broad.mit.edu	37	6	7568118	7568118	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7568118G>A	uc003mxp.1	+	10	1524	c.1245G>A	c.(1243-1245)CTG>CTA	p.L415L	DSP_uc003mxq.1_Silent_p.L415L	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	415	Globular 1.|Spectrin 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGCACCTGCTGGAACAGATCA	0.542													7	49					0	0	0.003080	0	0
DSP	1832	broad.mit.edu	37	6	7568687	7568687	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7568687C>T	uc003mxp.1	+	11	1563	c.1284C>T	c.(1282-1284)ATC>ATT	p.I428I	DSP_uc003mxq.1_Silent_p.I428I	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	428	Globular 1.|Spectrin 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAGAGAAAATCCTTGAATACA	0.378													54	26					0	0	0.003610	0	0
DSP	1832	broad.mit.edu	37	6	7581653	7581653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7581653G>A	uc003mxp.1	+	23	5509	c.5230G>A	c.(5230-5232)GAT>AAT	p.D1744N	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1744	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGCGGACAGTGATAAAAATGC	0.502													28	154					0	0	0.006320	0	0
DSP	1832	broad.mit.edu	37	6	7583607	7583607	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7583607A>G	uc003mxp.1	+	24	6391	c.6112A>G	c.(6112-6114)AAA>GAA	p.K2038E	DSP_uc003mxq.1_Missense_Mutation_p.K1439E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2038	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CAAGAGAAAGAAATTAATCAG	0.488													36	79					0	0	0.004289	0	0
DSP	1832	broad.mit.edu	37	6	7583695	7583695	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7583695T>C	uc003mxp.1	+	24	6479	c.6200T>C	c.(6199-6201)CTG>CCG	p.L2067P	DSP_uc003mxq.1_Missense_Mutation_p.L1468P	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2067	Plectin 2.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AATGAGAAGCTGACTGTCGAC	0.473													123	58					0	0	0.003610	0	0
BMP6	654	broad.mit.edu	37	6	7727831	7727831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7727831G>A	uc003mxu.3	+	1	821	c.643G>A	c.(643-645)GTC>ATC	p.V215I		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	215					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					CGCGGACATGGTCATGAGCTT	0.622													8	27					0	0	0.000673	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7987235	7987236	+	Missense_Mutation	DNP	CC	TT	TT	rs148316753	by1000genomes	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:7987235_7987236CC>TT	uc003mxx.3	+	1	901_902	c.466_467CC>TT	c.(466-468)CCG>TTG	p.P156L	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						CTGCAGTGAGCCGCTGATTGAA	0.515													32	8					0	0	0.004672	0	0
RANBP9	10048	broad.mit.edu	37	6	13632704	13632704	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:13632704G>A	uc003nbb.2	-	12	1904	c.1845C>T	c.(1843-1845)GCC>GCT	p.A615A	RANBP9_uc003nba.2_Silent_p.A274A	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	615	Interaction with FMR1.				axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			TTTCTATGGCGGCCTGACTTC	0.413													97	71					0	0	0.003610	0	0
NUP153	9972	broad.mit.edu	37	6	17649490	17649490	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:17649490G>A	uc003ncd.1	-	12	1637	c.1437C>T	c.(1435-1437)ATC>ATT	p.I479I	NUP153_uc011dje.1_Silent_p.I510I|NUP153_uc010jpl.1_Silent_p.I479I	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	479					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			AAGAACTGGTGATCGGTAGAG	0.373													12	85					0	0	0.001368	0	0
KIAA0319	9856	broad.mit.edu	37	6	24601303	24601303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:24601303G>A	uc011djo.1	-	2	266	c.29C>T	c.(28-30)TCA>TTA	p.S10L	KIAA0319_uc011djp.1_Intron|KIAA0319_uc003neh.1_Missense_Mutation_p.S10L|KIAA0319_uc011djq.1_5'UTR|KIAA0319_uc011djr.1_Missense_Mutation_p.S10L	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	10					negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CAGCAGCAATGAAGAGAGCAC	0.532													114	103					0	0	0.003610	0	0
SLC17A2	10246	broad.mit.edu	37	6	25923992	25923992	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:25923992G>A	uc011dkb.1	-	2	254	c.171C>T	c.(169-171)GCC>GCT	p.A57A	SLC17A2_uc011dkc.1_Silent_p.A57A|SLC17A2_uc003nfl.2_Silent_p.A57A			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	57					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						CCTCAGTGGAGGCATTAGATA	0.458													30	180					0	0	0.002445	0	0
TRIM38	10475	broad.mit.edu	37	6	25983887	25983887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:25983887C>T	uc003nfm.2	+	8	1805	c.1370C>T	c.(1369-1371)CCT>CTT	p.P457L	TRIM38_uc003nfn.2_Missense_Mutation_p.P439L|TRIM38_uc010jqd.2_Missense_Mutation_p.P93L	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	457	B30.2/SPRY.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						CAATATTCTCCTTTGTTTCTG	0.388													61	34					0	0	0.003610	0	0
HIST1H2AG	8969	broad.mit.edu	37	6	27100920	27100920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:27100920C>T	uc003niw.2	+	1	104	c.70C>T	c.(70-72)CTC>TTC	p.L24F	HIST1H2BJ_uc003niu.1_5'Flank|HIST1H2BJ_uc003niv.2_5'Flank	NM_021064	NP_066408	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ag	24					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding				0						TAGGGCCGGTCTCCAGTTCCC	0.657													16	61					0	0	0.006122	0	0
OR2B6	26212	broad.mit.edu	37	6	27925685	27925685	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:27925685C>T	uc011dkx.1	+	1	667	c.667C>T	c.(667-669)CGA>TGA	p.R223*		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTTTATTGTCCGAGCAGTATT	0.418													35	143					0	0	0.003755	0	0
OR2B6	26212	broad.mit.edu	37	6	27925809	27925809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:27925809C>T	uc011dkx.1	+	1	791	c.791C>T	c.(790-792)TCG>TTG	p.S264L		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAACCACCTTCGCCCAGCTCC	0.453													92	50					0	0	0.003610	0	0
ZNF323	64288	broad.mit.edu	37	6	28297244	28297244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28297244G>A	uc003nla.2	-	2	617	c.217C>T	c.(217-219)CAC>TAC	p.H73Y	ZNF323_uc003nld.2_Missense_Mutation_p.H73Y|ZNF323_uc010jra.2_Missense_Mutation_p.H73Y|ZNF323_uc003nlb.2_Intron|ZNF323_uc010jrb.2_Intron|ZNF323_uc003nlc.2_Missense_Mutation_p.H73Y	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	73	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCTTTGGTGTGGATTTCTGGC	0.552													174	96					0	0	0.003610	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28327564	28327564	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28327564C>T	uc003nle.3	+	2	417	c.201C>T	c.(199-201)CTC>CTT	p.L67L	ZKSCAN3_uc010jrc.2_Silent_p.L67L|ZKSCAN3_uc003nlf.3_Intron	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	67	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						TGAGTCGGCTCCGAGAGCTCT	0.667													14	85					0	0	0.003163	0	0
GPX6	257202	broad.mit.edu	37	6	28472213	28472213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28472213C>T	uc011dlj.1	-	6	572	c.522G>A	c.(520-522)ATG>ATA	p.M174I	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	174					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CATGGACCTTCATGGGCTCCC	0.498													13	56					0	0	0.002450	0	0
SCAND3	114821	broad.mit.edu	37	6	28542714	28542714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28542714C>T	uc003nlo.2	-	3	2386	c.1768G>A	c.(1768-1770)GAA>AAA	p.E590K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	590					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGCTTTTTTCAGCCACCTTA	0.363													38	18					0	0	0.005524	0	0
SCAND3	114821	broad.mit.edu	37	6	28543161	28543161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28543161C>T	uc003nlo.2	-	3	1939	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	441	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGAAAATTCCCTCCCATTG	0.418													53	23					0	0	0.003610	0	0
SCAND3	114821	broad.mit.edu	37	6	28543719	28543719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:28543719C>T	uc003nlo.2	-	3	1381	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	255	Potential.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCTTTCACTTCCTTTATCAAC	0.353													21	117					0	0	0.001216	0	0
OR14J1	442191	broad.mit.edu	37	6	29274755	29274755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:29274755C>T	uc011dln.1	+	1	289	c.289C>T	c.(289-291)CTT>TTT	p.L97F		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCAGTGCATTCTTCAGGTTTT	0.458													175	68					0	0	0.003610	0	0
OR12D3	81797	broad.mit.edu	37	6	29342252	29342252	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:29342252C>T	uc003nme.2	-	1	817	c.813G>A	c.(811-813)CGG>CGA	p.R271R		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	271	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						TGGCCATTATCCGGTCCTGAA	0.463													16	72					0	0	0.003163	0	0
OR12D3	81797	broad.mit.edu	37	6	29342738	29342738	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:29342738C>T	uc003nme.2	-	1	331	c.327G>A	c.(325-327)GAG>GAA	p.E109E		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						GTAAAATGGCCTCTGTGCTTC	0.493													51	16					0	0	0.003610	0	0
OR2H1	26716	broad.mit.edu	37	6	29430158	29430158	+	Silent	SNP	C	T	T	rs144363872	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:29430158C>T	uc003nmi.2	+	3	1055	c.612C>T	c.(610-612)TTC>TTT	p.F204F	OR2H1_uc003nmj.1_Silent_p.F204F|OR2H1_uc010jri.1_Silent_p.F126F	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGTCATCTTCGTGGTTGTGC	0.502													169	49					0	0	0.003610	0	0
RNF39	80352	broad.mit.edu	37	6	30043030	30043031	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:30043030_30043031GG>AA	uc003npe.2	-	1	598_599	c.536_537CC>TT	c.(535-537)CCC>CTT	p.P179L	RNF39_uc003npd.2_Missense_Mutation_p.P179L	NM_025236	NP_079512	Q9H2S5	RNF39_HUMAN	ring finger protein 39 isoform 1	179						cytoplasm	zinc ion binding				0						AGCCCATGGTGGGGATGCGCCC	0.713													10	20					0	0	0.004672	0	0
TRIM31	11074	broad.mit.edu	37	6	30075851	30075851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:30075851C>T	uc003npg.1	-	6	972	c.862G>A	c.(862-864)GGG>AGG	p.G288R	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	288	Potential.					mitochondrion	ligase activity|zinc ion binding			lung(1)	1						TTTAGGCTCCCTGTGATGGAG	0.433													35	18					0	0	0.004289	0	0
ABCF1	23	broad.mit.edu	37	6	30546139	30546140	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:30546139_30546140CC>TT	uc003nql.2	+	5	453_454	c.358_359CC>TT	c.(358-360)CCC>TTC	p.P120F	ABCF1_uc003nqk.2_Missense_Mutation_p.P121F|ABCF1_uc003nqm.2_Missense_Mutation_p.P120F|ABCF1_uc010jsb.2_Intron	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	120					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						CGCCCCAAAACCCCGCGGAGGG	0.49													12	70					0	0	0.004672	0	0
MUC21	394263	broad.mit.edu	37	6	30951752	30951752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:30951752G>A	uc003nsh.2	+	1	268	c.17G>A	c.(16-18)GGA>GAA	p.G6E	MUC21_uc003nsi.1_RNA	NM_001010909	NP_001010909	Q5SSG8	MUC21_HUMAN	mucin 21 precursor	6						integral to membrane|plasma membrane				ovary(1)|skin(1)	2						ATGCAGAAAGGAAATGTTCTC	0.428													24	83					0	0	0.006320	0	0
CDSN	1041	broad.mit.edu	37	6	31083859	31083860	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31083859_31083860GG>AA	uc003nsm.1	-	2	1559_1560	c.1532_1533CC>TT	c.(1531-1533)CCC>CTT	p.P511L	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	511					cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						CAGCTAGCTGGGGCCCCAGAGG	0.564													20	84					0	0	0.004672	0	0
CDSN	1041	broad.mit.edu	37	6	31084447	31084447	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31084447C>T	uc003nsm.1	-	2	972	c.945G>A	c.(943-945)AAG>AAA	p.K315K	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	315	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						AGATTTTACCCTTACTGTAGG	0.552													40	17					0	0	0.002222	0	0
MICA	4276	broad.mit.edu	37	6	31379747	31379747	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31379747C>G	uc003ntk.1	+	4	676	c.637C>G	c.(637-639)CGC>GGC	p.R213G	MICA_uc003rxz.1_Missense_Mutation_p.R75G					RecName: Full=MHC class I polypeptide-related sequence A;          Short=MIC-A; Flags: Precursor;												0		Ovarian(999;0.0253)				GAATGTCACCCGCAGCGAGGC	0.572													41	24					0	0	0.003610	0	0
LTA	4049	broad.mit.edu	37	6	31541214	31541214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31541214C>T	uc011dnu.1	+	4	575	c.362C>T	c.(361-363)TCT>TTT	p.S121F	LTA_uc003nue.1_Missense_Mutation_p.S121F|LTA_uc003nuf.2_Intron|LTA_uc003nuh.2_Intron|LTA_uc003nug.2_Intron|LTA_uc010jsr.2_Intron|TNF_uc003nui.2_5'Flank	NM_001159740	NP_001153212	P01374	TNFB_HUMAN	lymphotoxin alpha precursor	121					cell-cell signaling|induction of apoptosis|signal transduction	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0					Etanercept(DB00005)	AAAGCCTACTCTCCCAAGGCC	0.572													93	64					0	0	0.003610	0	0
BAT2	7916	broad.mit.edu	37	6	31598926	31598926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31598926C>T	uc003nvb.3	+	16	2725	c.2476C>T	c.(2476-2478)CCT>TCT	p.P826S	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P826S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	826	4 X 57 AA type A repeats.|Poly-Pro.					cytoplasm|nucleus	protein binding				0						GAGCGAGACTCCTCCAGTACC	0.502													33	173					0	0	0.004878	0	0
BAT3	7917	broad.mit.edu	37	6	31608220	31608221	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31608220_31608221CG>AT	uc003nvg.3	-	22	3303_3304	c.2989_2990CG>AT	c.(2989-2991)CGG>ATG	p.R997M	BAT3_uc003nvf.3_Missense_Mutation_p.R991M|BAT3_uc003nvh.3_Missense_Mutation_p.R991M|BAT3_uc003nvi.3_Missense_Mutation_p.R991M|BAT3_uc011dnw.1_Missense_Mutation_p.R991M|BAT3_uc011dnx.1_Intron	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	997					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						CTGTTCATCCCGGGAGCCCCCC	0.599													14	850					0	0	0.004672	0	0
BAT3	7917	broad.mit.edu	37	6	31617092	31617093	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31617092_31617093CC>AA	uc003nvg.3	-	4	620_621	c.306_307GG>TT	c.(304-309)ACGGGG>ACTTGG	p.G103W	BAT3_uc003nvf.3_Missense_Mutation_p.G103W|BAT3_uc003nvh.3_Missense_Mutation_p.G103W|BAT3_uc003nvi.3_Missense_Mutation_p.G103W|BAT3_uc011dnw.1_Missense_Mutation_p.G103W|BAT3_uc011dnx.1_Missense_Mutation_p.G103W|BAT3_uc003nvj.1_Missense_Mutation_p.G103W	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	103					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						GAGGCAGACCCCGTCCCAGAAG	0.589													11	682					0	0	0.004672	0	0
C6orf25	80739	broad.mit.edu	37	6	31691460	31691460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31691460G>A	uc011doc.1	+	2	106	c.106G>A	c.(106-108)GGA>AGA	p.G36R	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Missense_Mutation_p.G36R|C6orf25_uc011dod.1_Missense_Mutation_p.G36R|C6orf25_uc011doe.1_Missense_Mutation_p.G36R|C6orf25_uc003nwo.2_Missense_Mutation_p.G36R|C6orf25_uc003nwn.2_Missense_Mutation_p.G36R	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	36	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						TCTCTCCTGCGGAGGAGTCTC	0.667													91	161					0	0	0.003610	0	0
C6orf25	80739	broad.mit.edu	37	6	31691594	31691594	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31691594C>T	uc011doc.1	+	2	240	c.240C>T	c.(238-240)TTC>TTT	p.F80F	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Silent_p.F80F|C6orf25_uc011dod.1_Silent_p.F80F|C6orf25_uc011doe.1_Silent_p.F80F|C6orf25_uc003nwo.2_Silent_p.F80F|C6orf25_uc003nwn.2_Silent_p.F80F	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	80	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						TCCAGCCTTTCGTCGGCCGCC	0.687													160	318					0	0	0.003610	0	0
CLIC1	1192	broad.mit.edu	37	6	31698760	31698761	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31698760_31698761CC>AA	uc003nwr.2	-	6	848_849	c.584_585GG>TT	c.(583-585)CGG>CTT	p.R195L	DDAH2_uc003nwp.2_5'Flank|DDAH2_uc003nwq.2_5'Flank|CLIC1_uc003rje.2_Missense_Mutation_p.R195L	NM_001288	NP_001279	O00299	CLIC1_HUMAN	chloride intracellular channel 1	195	GST C-terminal.				signal transduction	brush border|chloride channel complex|cytoplasm|membrane fraction|nuclear membrane|plasma membrane|soluble fraction	protein binding|voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						TGGTGAATCCCCGGTACTTCTT	0.579													13	576					0	0	0.004672	0	0
MSH5	4439	broad.mit.edu	37	6	31727911	31727911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31727911C>T	uc003nwv.1	+	19	1809	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F	MSH5_uc003nwt.1_Missense_Mutation_p.S594F|MSH5_uc003nwu.1_Missense_Mutation_p.S577F|MSH5_uc003nww.1_Missense_Mutation_p.S577F|MSH5_uc003nwx.1_Missense_Mutation_p.S594F|MSH5_uc011dof.1_Missense_Mutation_p.S276F|MSH5_uc003nwy.1_Missense_Mutation_p.S251F|MSH5_uc003nwz.3_RNA|C6orf26_uc003nxa.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	577					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						GTGCCCAACTCCACAGAATGT	0.542								Direct_reversal_of_damage|MMR					262	403					0	0	0.003610	0	0
C6orf27	80737	broad.mit.edu	37	6	31744007	31744007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:31744007G>A	uc011dog.1	-	3	485	c.247C>T	c.(247-249)CTT>TTT	p.L83F	C6orf27_uc003nxd.2_5'UTR|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	83						extracellular region				ovary(3)	3						TCATCAGCAAGGAGTGTTCGA	0.582													248	170					0	0	0.003610	0	0
CYP21A2	1589	broad.mit.edu	37	6	32007339	32007339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32007339C>T	uc003nze.1	+	5	684	c.566C>T	c.(565-567)CCT>CTT	p.P189L	CYP21A2_uc003nzf.1_Missense_Mutation_p.P159L	NM_000500	NP_000491	P08686	CP21A_HUMAN	cytochrome P450, family 21, subfamily A,	188					glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|steroid 21-monooxygenase activity|steroid binding				0						AACTTAATGCCTGCCTATTAC	0.542													107	55					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32016312	32016313	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32016312_32016313GG>AA	uc003nzl.2	-	29	10068_10069	c.9866_9867CC>TT	c.(9865-9867)TCC>TTT	p.S3289F	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3336	Fibronectin type-III 25.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTACCAGGAAGGAGTCAAAGGG	0.728													42	354					0	0	0.004672	0	0
TNXB	7148	broad.mit.edu	37	6	32023874	32023874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32023874C>T	uc003nzl.2	-	24	8423	c.8221G>A	c.(8221-8223)GAG>AAG	p.E2741K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2799	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACTGTCAGCTCCCCCAGGAGC	0.627													156	463					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32029321	32029321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32029321C>T	uc003nzl.2	-	21	7547	c.7345G>A	c.(7345-7347)GAC>AAC	p.D2449N		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2509	Fibronectin type-III 17.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCCGCCCGTCCCTGTCCTTG	0.657													374	286					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32041690	32041690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32041690G>A	uc003nzl.2	-	12	4617	c.4415C>T	c.(4414-4416)CCG>CTG	p.P1472L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1559					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGCTCCAGCGGGGACTCAGT	0.557													158	407					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32049952	32049952	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32049952C>T	uc003nzl.2	-	9	3799	c.3597G>A	c.(3595-3597)CGG>CGA	p.R1199R		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1286	Fibronectin type-III 5.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCACCTGGGGCCGTCCATCCC	0.562													72	474					0	0	0.003610	0	0
ATF6B	1388	broad.mit.edu	37	6	32095928	32095928	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32095928G>T	uc003nzn.2	-	1	90	c.57C>A	c.(55-57)GAC>GAA	p.D19E	ATF6B_uc003nzo.2_Missense_Mutation_p.D19E|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_Missense_Mutation_p.D19E	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	19	Cytoplasmic (Potential).|Transcription activation.				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TAAGCAGGTTGTCGGTGAAGA	0.652													115	222					1.14069e-62	1.66712e-62	0.003610	1	0
AGER	177	broad.mit.edu	37	6	32150708	32150708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32150708C>T	uc003oal.1	-	6	625	c.601G>A	c.(601-603)GAT>AAT	p.D201N	AGER_uc003oak.1_5'UTR|AGER_uc003oar.2_Missense_Mutation_p.D100N|AGER_uc011dpm.1_Missense_Mutation_p.D100N|AGER_uc011dpn.1_Missense_Mutation_p.D100N|AGER_uc010jtv.1_Missense_Mutation_p.D201N|AGER_uc011dpo.1_Missense_Mutation_p.D114N|AGER_uc003oam.1_Intron|AGER_uc003oan.1_Missense_Mutation_p.D187N|AGER_uc003oap.1_Missense_Mutation_p.D217N|AGER_uc003oat.1_Missense_Mutation_p.D217N|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Missense_Mutation_p.D187N|AGER_uc010jtw.1_RNA|AGER_uc003oas.1_Missense_Mutation_p.D201N|AGER_uc003oau.1_Missense_Mutation_p.D201N|AGER_uc011dpp.1_Missense_Mutation_p.D201N|AGER_uc011dpq.1_Missense_Mutation_p.D217N	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	201	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						GGACGGGGATCTCCTCCCCGG	0.622													311	408					0	0	0.003610	0	0
NOTCH4	4855	broad.mit.edu	37	6	32168713	32168713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32168713C>T	uc003obb.2	-	23	4349	c.4210G>A	c.(4210-4212)GAC>AAC	p.D1404N	NOTCH4_uc003oba.2_Missense_Mutation_p.D67N|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1404	Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						AGCCCAGGGTCCCAGGGACAG	0.642													58	302					0	0	0.003610	0	0
TAP2	6891	broad.mit.edu	37	6	32782291	32782291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32782291G>A	uc011dqf.1	-	14	2392	c.2270C>T	c.(2269-2271)CCA>CTA	p.P757L	HLA-DOB_uc003oca.2_Missense_Mutation_p.P150L|HLA-DOB_uc011dqg.1_Missense_Mutation_p.P150L	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						GATATCCCCTGGATAGAAGCC	0.547													37	224					0	0	0.004289	0	0
TAP2	6891	broad.mit.edu	37	6	32797178	32797178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32797178G>A	uc003occ.2	-	10	1962	c.1931C>T	c.(1930-1932)GCC>GTC	p.A644V	TAP2_uc011dqf.1_Missense_Mutation_p.A644V|TAP2_uc003ocb.1_Missense_Mutation_p.A644V|TAP2_uc003ocd.2_Missense_Mutation_p.A644V	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	644	ABC transporter.|Cytoplasmic (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						GGTACTCACGGCCTGCTCGCA	0.622													12	4					0	0	0.001855	0	0
PSMB8	5696	broad.mit.edu	37	6	32809461	32809461	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:32809461T>C	uc003oce.2	-	5	632	c.589A>G	c.(589-591)ATG>GTG	p.M197V	TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank|PSMB8_uc003ocf.2_Missense_Mutation_p.M193V	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	197					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						GTGGAGAACATATTTCCTGAG	0.502													106	198					0	0	0.003610	0	0
COL11A2	1302	broad.mit.edu	37	6	33156922	33156922	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33156922G>A	uc003ocx.1	-	3	504	c.276C>T	c.(274-276)ACC>ACT	p.T92T	COL11A2_uc003ocy.1_Silent_p.T92T|COL11A2_uc003ocz.1_Silent_p.T92T|COL11A2_uc003oda.2_Silent_p.T92T	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	92	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						GACCAGGGCGGGTCCGGACAA	0.592													33	53					0	0	0.002445	0	0
RING1	6015	broad.mit.edu	37	6	33179007	33179007	+	Silent	SNP	C	A	A	rs137929771		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33179007C>A	uc003odk.2	+	5	722	c.528C>A	c.(526-528)CCC>CCA	p.P176P	RING1_uc011dqx.1_Silent_p.P176P|RING1_uc003odl.2_Silent_p.P147P	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	176	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						AAGGAGAGCCCGGGGAGGGAG	0.642													8	226					0.00307968	0.00441594	0.003080	1	0
RPS18	6222	broad.mit.edu	37	6	33244213	33244213	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33244213C>T	uc003odp.1	+	6	474	c.429C>T	c.(427-429)GGC>GGT	p.G143G	RPS18_uc010jum.1_RNA|RPS18_uc003odq.1_RNA|B3GALT4_uc003odr.2_5'Flank	NM_022551	NP_072045	P62269	RS18_HUMAN	ribosomal protein S18	143					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	rRNA binding|structural constituent of ribosome				0						GCCGCCGTGGCCGCACCGTGG	0.488													18	26					0	0	0.002780	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33399973	33399973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33399973C>T	uc011dri.1	+	4	526	c.331C>T	c.(331-333)CCA>TCA	p.P111S	SYNGAP1_uc003oeo.1_Missense_Mutation_p.P96S|SYNGAP1_uc010juy.2_Missense_Mutation_p.P96S	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	111					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding	p.F111F(1)		ovary(4)	4						GAAGAGTGTCCCAGGGGGGAA	0.637													6	57					0	0	0.001984	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33406562	33406562	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33406562C>T	uc011dri.1	+	10	1737	c.1542C>T	c.(1540-1542)ATC>ATT	p.I514I	SYNGAP1_uc003oeo.1_Silent_p.I499I|SYNGAP1_uc010juy.2_Silent_p.I499I|SYNGAP1_uc010juz.2_Silent_p.I226I	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	514	Ras-GAP.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GAGAATTCATCCGTGCTCTGT	0.557													100	139					0	0	0.003610	0	0
C6orf227	401253	broad.mit.edu	37	6	33561001	33561001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:33561001G>A	uc003oew.1	-	1	115	c.113C>T	c.(112-114)CCT>CTT	p.P38L		NR_027908				RecName: Full=Putative uncharacterized protein C6orf227;												0						GGAACCAAGAGGTTGGCACCG	0.721													7	10					0	0	0.003080	0	0
GRM4	2914	broad.mit.edu	37	6	34003929	34003929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:34003929G>A	uc003oir.3	-	8	2128	c.1958C>T	c.(1957-1959)TCG>TTG	p.S653L	GRM4_uc011dsn.1_Missense_Mutation_p.S606L|GRM4_uc010jvh.2_Missense_Mutation_p.S653L|GRM4_uc010jvi.2_Missense_Mutation_p.S345L|GRM4_uc003oio.2_Missense_Mutation_p.S345L|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.S513L|GRM4_uc003oiq.2_Missense_Mutation_p.S520L|GRM4_uc011dsm.1_Missense_Mutation_p.S484L	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	653	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TCGGCGCAGCGAGCAGGTGCC	0.612													46	37					0	0	0.003610	0	0
GRM4	2914	broad.mit.edu	37	6	34101185	34101185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:34101185G>A	uc003oir.3	-	1	259	c.89C>T	c.(88-90)TCC>TTC	p.S30F	GRM4_uc011dsn.1_Missense_Mutation_p.S30F|GRM4_uc010jvh.2_Missense_Mutation_p.S30F|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Intron	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	30					activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CTTTCCCAGGGAGGAAGGCAT	0.632													10	47					0	0	0.000673	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773458	35773458	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:35773458T>A	uc003olg.1	+	1	388	c.11T>A	c.(10-12)TTG>TAG	p.L4*		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	4						integral to membrane				skin(1)	1						ATGGTGAAATTGCTGCCGGCC	0.622													16	44					0	0	0.007413	0	0
SLC26A8	116369	broad.mit.edu	37	6	35960338	35960338	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:35960338G>A	uc003olm.2	-	6	852	c.741C>T	c.(739-741)TTC>TTT	p.F247F	SLC26A8_uc003oln.2_Silent_p.F247F|SLC26A8_uc003oll.2_Intron	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	247	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TCCCAAAGATGAAAGTCAGCT	0.463													80	12					0	0	0.003610	0	0
MAPK13	5603	broad.mit.edu	37	6	36106167	36106167	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:36106167G>A	uc003ols.2	+	9	806	c.708G>A	c.(706-708)CTG>CTA	p.L236L	MAPK13_uc003olt.2_Intron	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	236	Protein kinase.				cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CCCAGATCCTGAAAGTGACCG	0.602													28	2					0	0	0.002445	0	0
FGD2	221472	broad.mit.edu	37	6	36979490	36979490	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:36979490C>T	uc010jwp.1	+	4	558	c.387C>T	c.(385-387)TTC>TTT	p.F129F	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	129	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGGTGTTTTTCCAGGAGCTGC	0.547													69	42					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38875791	38875791	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:38875791G>A	uc003ooe.1	+	62	9357	c.8757G>A	c.(8755-8757)GTG>GTA	p.V2919V	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGATTTCAGTGATGAAGAGGG	0.393													30	34					0	0	0.002096	0	0
DNAH8	1769	broad.mit.edu	37	6	38913246	38913246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:38913246G>A	uc003ooe.1	+	78	11960	c.11360G>A	c.(11359-11361)GGA>GAA	p.G3787E	DNAH8_uc003oog.1_Missense_Mutation_p.G236E|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCCCCAGGGGGAGCAGCTCTG	0.453													23	74					0	0	0.003330	0	0
KCNK5	8645	broad.mit.edu	37	6	39159434	39159434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:39159434C>T	uc003oon.2	-	5	1096	c.732G>A	c.(730-732)TGG>TGA	p.W244*		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	244	Helical; (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						TGCTCACCTTCCAGTTGACAA	0.592													32	106					0	0	0.003271	0	0
KIAA0240	23506	broad.mit.edu	37	6	42796529	42796529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:42796529C>T	uc003osn.1	+	6	609	c.458C>T	c.(457-459)TCT>TTT	p.S153F	KIAA0240_uc003osm.1_Missense_Mutation_p.S153F|KIAA0240_uc011duw.1_Missense_Mutation_p.S153F|KIAA0240_uc003oso.1_Missense_Mutation_p.S153F|KIAA0240_uc003osp.1_Missense_Mutation_p.S153F	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	153										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			ACTCAGGCTTCTAATGTTTCT	0.463													133	20					0	0	0.003610	0	0
CNPY3	10695	broad.mit.edu	37	6	42906465	42906465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:42906465C>T	uc003ota.3	+	6	1222	c.773C>T	c.(772-774)CCC>CTC	p.P258L	CNPY3_uc003osz.2_Missense_Mutation_p.P233L|CNPY3_uc003otc.3_Missense_Mutation_p.P133L|CNPY3_uc003otb.3_Missense_Mutation_p.P169L	NM_006586	NP_006577	Q9BT09	CNPY3_HUMAN	trinucleotide repeat containing 5 precursor	258	Saposin B-type.				innate immune response	endoplasmic reticulum				ovary(1)	1	Colorectal(47;0.196)		all cancers(41;0.000954)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			GACCCCAGCCCCGAGGAGGAT	0.612													33	5					0	0	0.002222	0	0
CUL9	23113	broad.mit.edu	37	6	43167691	43167691	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:43167691C>T	uc003ouk.2	+	14	3256	c.3181C>T	c.(3181-3183)CTA>TTA	p.L1061L	CUL9_uc003oul.2_Silent_p.L1061L|CUL9_uc010jyk.2_Silent_p.L213L	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1061					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						GACCTGCTTCCTACATCGCCT	0.502													80	15					0	0	0.003610	0	0
RUNX2	860	broad.mit.edu	37	6	45296521	45296521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:45296521G>A	uc011dvx.1	+	2	268	c.58G>A	c.(58-60)GAT>AAT	p.D20N	SUPT3H_uc003oxn.1_Intron|SUPT3H_uc003oxo.2_Intron|SUPT3H_uc011dvv.1_Intron|SUPT3H_uc003oxp.2_Intron|RUNX2_uc011dvy.1_Missense_Mutation_p.D20N|RUNX2_uc003oxs.1_RNA	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	20					negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						CTTCTTTTGGGGTAAGTGTTA	0.358													39	22					0	0	0.002852	0	0
PGK2	5232	broad.mit.edu	37	6	49753821	49753821	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:49753821C>T	uc003ozu.2	-	1	1187	c.1080G>A	c.(1078-1080)GTG>GTA	p.V360V		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	360					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AAGTGGCTTTCACAATTTCAT	0.473													125	71					0	0	0.003610	0	0
TFAP2B	7021	broad.mit.edu	37	6	50805795	50805795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:50805795C>T	uc003pag.2	+	5	1095	c.929C>T	c.(928-930)TCC>TTC	p.S310F		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	310					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					TTACTCACCTCCCTGGTGGAA	0.483													21	60					0	0	0.001523	0	0
GCM1	8521	broad.mit.edu	37	6	52993217	52993217	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:52993217C>T	uc003pbp.2	-	6	1307	c.1098G>A	c.(1096-1098)GAG>GAA	p.E366E		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	366						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					CATGTACTTTCTCTTCATAAA	0.488													28	173					0	0	0.004656	0	0
FAM83B	222584	broad.mit.edu	37	6	54735289	54735289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:54735289C>T	uc003pck.2	+	2	361	c.245C>T	c.(244-246)TCC>TTC	p.S82F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	82										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ACTGATGATTCCTGTGATGAT	0.433													28	170					0	0	0.002445	0	0
FAM83B	222584	broad.mit.edu	37	6	54805757	54805757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:54805757G>A	uc003pck.2	+	5	2104	c.1988G>A	c.(1987-1989)CGA>CAA	p.R663Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	663										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTTAAAAGGCGAAGTTTCCCG	0.343													82	50					0	0	0.003610	0	0
COL21A1	81578	broad.mit.edu	37	6	55922555	55922555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:55922555C>T	uc003pcs.2	-	30	3006	c.2774G>A	c.(2773-2775)GGA>GAA	p.G925E	COL21A1_uc010jzz.2_Missense_Mutation_p.G310E|COL21A1_uc011dxg.1_Missense_Mutation_p.G298E|COL21A1_uc011dxh.1_Missense_Mutation_p.G276E|COL21A1_uc003pcr.2_Missense_Mutation_p.G282E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	925					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCCTTGGATTCCAGGTTTTCC	0.517													5	16					0	0	0.000602	0	0
COL21A1	81578	broad.mit.edu	37	6	56044778	56044778	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:56044778G>A	uc003pcs.2	-	3	470	c.238C>T	c.(238-240)CAA>TAA	p.Q80*	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Nonsense_Mutation_p.Q80*|COL21A1_uc003pcu.1_Nonsense_Mutation_p.Q80*	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	80	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCACTATATTGAACCACTCCA	0.413													30	5					0	0	0.002096	0	0
DST	667	broad.mit.edu	37	6	56458588	56458588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:56458588C>T	uc003pdf.2	-	42	6270	c.6242G>A	c.(6241-6243)AGA>AAA	p.R2081K	DST_uc003pcz.3_Missense_Mutation_p.R1903K|DST_uc011dxj.1_Missense_Mutation_p.R1932K|DST_uc011dxk.1_Missense_Mutation_p.R1943K|DST_uc003pcy.3_Missense_Mutation_p.R1577K|DST_uc010kaa.1_RNA	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	3989	Spectrin 2.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TTCCAACACTCTGTTTCCAGA	0.433													53	318					0	0	0.003610	0	0
LGSN	51557	broad.mit.edu	37	6	63990162	63990162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:63990162G>A	uc003peh.2	-	4	1328	c.1294C>T	c.(1294-1296)CAT>TAT	p.H432Y	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	432					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	TTACTGCTATGAAGTCCATCT	0.483													13	106					0	0	0.002450	0	0
BAI3	577	broad.mit.edu	37	6	69349304	69349304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:69349304C>T	uc003pev.3	+	3	1185	c.737C>T	c.(736-738)GCC>GTC	p.A246V	BAI3_uc010kak.2_Missense_Mutation_p.A246V	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	246	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACCAGGGAGGCCAAGCGACCA	0.522													5	8					0	0	0.001168	0	0
FAM135A	57579	broad.mit.edu	37	6	71190694	71190694	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:71190694C>T	uc003pfj.2	+	7	766	c.633C>T	c.(631-633)GTC>GTT	p.V211V	FAM135A_uc003pfi.2_Silent_p.V211V|FAM135A_uc003pfh.2_Silent_p.V168V|FAM135A_uc003pfk.2_Silent_p.V211V|FAM135A_uc003pfl.2_Silent_p.V48V|FAM135A_uc003pfm.1_5'Flank	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	211										central_nervous_system(1)	1						AAAGTGTGGTCTTTGGTATTA	0.343													37	9					0	0	0.007835	0	0
KHDC1	80759	broad.mit.edu	37	6	73952130	73952130	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:73952130G>A	uc003pgo.2	-	3	831	c.330C>T	c.(328-330)TTC>TTT	p.F110F	KHDC1_uc011dyl.1_RNA|KHDC1_uc003pgn.3_Silent_p.F37F	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	110	KH; atypical.					integral to membrane	RNA binding			skin(1)	1						GCCACTCACCGAAGATGAGCT	0.522													17	19					0	0	0.007413	0	0
CD109	135228	broad.mit.edu	37	6	74519803	74519803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:74519803C>T	uc003php.2	+	27	3877	c.3452C>T	c.(3451-3453)TCA>TTA	p.S1151L	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.S1151L|CD109_uc010kba.2_Missense_Mutation_p.S1074L	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	1151						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						GCACTGCTCTCACACTTCTTA	0.483													32	3					0	0	0.004878	0	0
IMPG1	3617	broad.mit.edu	37	6	76751784	76751784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:76751784C>T	uc003pik.1	-	2	257	c.127G>A	c.(127-129)GAA>AAA	p.E43K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	43					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCAGTTGTTTCATTTCTTGGG	0.323													19	43					0	0	0.001882	0	0
PGM3	5238	broad.mit.edu	37	6	83896745	83896745	+	Missense_Mutation	SNP	G	T	T	rs142142489	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:83896745G>T	uc003pjv.2	-	4	479	c.439C>A	c.(439-441)CTA>ATA	p.L147I	PGM3_uc003pjw.2_Missense_Mutation_p.L66I|PGM3_uc011dyz.1_Missense_Mutation_p.L175I	NM_015599	NP_056414	O95394	AGM1_HUMAN	phosphoglucomutase 3	147					dolichol-linked oligosaccharide biosynthetic process|embryo development ending in birth or egg hatching|glucose 1-phosphate metabolic process|hemopoiesis|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	magnesium ion binding|phosphoacetylglucosamine mutase activity|phosphoglucomutase activity				0		all_cancers(76;0.000504)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.068)		BRCA - Breast invasive adenocarcinoma(397;0.0478)		TGACCTCCTAGAACAGTCACA	0.299													39	8					2.37825e-27	3.47141e-27	0.002522	1	0
SNAP91	9892	broad.mit.edu	37	6	84311154	84311154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:84311154G>A	uc011dze.1	-	15	1477	c.1160C>T	c.(1159-1161)TCT>TTT	p.S387F	SNAP91_uc011dzd.1_5'UTR|SNAP91_uc003pkb.2_Missense_Mutation_p.S350F|SNAP91_uc003pkc.2_Missense_Mutation_p.S385F|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.S385F	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	387	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TGCAGCCAAAGAATCTATATT	0.423													9	4					0	0	0.000673	0	0
TBX18	9096	broad.mit.edu	37	6	85446677	85446677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:85446677G>A	uc003pkl.1	-	8	1550	c.1550C>T	c.(1549-1551)TCC>TTC	p.S517F	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	517					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		AGTATTATAGGAACCCTGATG	0.478													37	68					0	0	0.007835	0	0
MDN1	23195	broad.mit.edu	37	6	90482425	90482425	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:90482425G>A	uc003pnn.1	-	14	2066	c.1950C>T	c.(1948-1950)TTC>TTT	p.F650F	MDN1_uc003pno.1_Silent_p.F68F	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	650					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GTGTAGCAGCGAAAGTGAACT	0.498													17	37					0	0	0.001216	0	0
GJA10	84694	broad.mit.edu	37	6	90604271	90604271	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:90604271C>T	uc011eaa.1	+	1	84	c.84C>T	c.(82-84)ATC>ATT	p.I28I		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	28	Helical; (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		GGCTGACCATCCTCTTCATCT	0.512													32	14					0	0	0.002445	0	0
EPHA7	2045	broad.mit.edu	37	6	93964399	93964399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:93964399C>T	uc003poe.2	-	14	2739	c.2498G>A	c.(2497-2499)GGA>GAA	p.G833E	EPHA7_uc003pof.2_Missense_Mutation_p.G828E|EPHA7_uc011eac.1_Missense_Mutation_p.G829E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	833	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AGGTCTTTCTCCATAAGACAT	0.403													22	8					0	0	0.001512	0	0
EPHA7	2045	broad.mit.edu	37	6	94120701	94120701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:94120701C>T	uc003poe.2	-	3	591	c.350G>A	c.(349-351)GGA>GAA	p.G117E	EPHA7_uc003pof.2_Missense_Mutation_p.G117E|EPHA7_uc011eac.1_Missense_Mutation_p.G117E|EPHA7_uc003pog.3_Missense_Mutation_p.G117E	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	117	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTTGCAAGTTCCCAGTACTCC	0.383													39	14					0	0	0.007835	0	0
FUT9	10690	broad.mit.edu	37	6	96651729	96651729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:96651729C>T	uc003pop.3	+	3	1039	c.698C>T	c.(697-699)CCT>CTT	p.P233L		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	233	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AATTTGATTCCTACCATATCT	0.353													11	3					0	0	0.001368	0	0
KIAA0776	23376	broad.mit.edu	37	6	97001327	97001327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:97001327C>T	uc003por.2	+	19	2381	c.2333C>T	c.(2332-2334)TCC>TTC	p.S778F	KIAA0776_uc010kck.2_RNA	NM_015323	NP_056138	O94874	UFL1_HUMAN	hypothetical protein LOC23376	778					negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|protein ufmylation	endoplasmic reticulum|nucleus	protein binding|UFM1 conjugating enzyme activity			ovary(1)	1		all_cancers(76;5.83e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0604)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0934)		CTTTCTTCATCCATTAAAGAC	0.363													8	16					0	0	0.000978	0	0
SFRS18	25957	broad.mit.edu	37	6	99856122	99856123	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:99856122_99856123GG>AA	uc003ppo.3	-	7	926_927	c.698_699CC>TT	c.(697-699)CCC>CTT	p.P233L	SFRS18_uc003ppp.3_Missense_Mutation_p.P233L|SFRS18_uc011eag.1_Missense_Mutation_p.P233L|SFRS18_uc003ppr.2_Missense_Mutation_p.P233L	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	233						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		GAATCCAAGCGGGAAGAGTCCT	0.361													32	8					0	0	0.004672	0	0
GRIK2	2898	broad.mit.edu	37	6	102074293	102074294	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:102074293_102074294GG>AA	uc003pqp.3	+	3	571_572	c.322_323GG>AA	c.(322-324)GGG>AAG	p.G108K	GRIK2_uc003pqn.2_Missense_Mutation_p.G108K|GRIK2_uc003pqo.3_Missense_Mutation_p.G108K|GRIK2_uc010kcw.2_Missense_Mutation_p.G108K	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	108	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TGCCATCTTCGGGCCTTCACAC	0.54													114	40					0	0	0.004672	0	0
PRDM1	639	broad.mit.edu	37	6	106553680	106553680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:106553680C>T	uc003prd.2	+	5	1879	c.1645C>T	c.(1645-1647)CTC>TTC	p.L549F	PRDM1_uc003pre.2_Missense_Mutation_p.L415F	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	549					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		AGCCATGAATCTCATTAAAAA	0.552			D|N|Mis|F|S		DLBCL								21	4					0	0	0.001882	0	0
AKD1	221264	broad.mit.edu	37	6	109962759	109962759	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:109962759G>A	uc003ptn.2	-	10	972	c.895C>T	c.(895-897)CAG>TAG	p.Q299*	AKD1_uc003ptr.3_Nonsense_Mutation_p.Q299*	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	299					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						TCTGCACCCTGAAGTTTGGTT	0.299													20	3					0	0	0.002299	0	0
KIAA1919	91749	broad.mit.edu	37	6	111587465	111587465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:111587465C>T	uc003puv.3	+	4	1122	c.700C>T	c.(700-702)CTT>TTT	p.L234F		NM_153369	NP_699200	Q5TF39	NAGT1_HUMAN	sodium-dependent glucose transporter 1	234	Helical; (Potential).				carbohydrate transport|sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(3)	3		all_cancers(87;2.35e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.055)|all cancers(137;0.0871)|Epithelial(106;0.0884)		TCTTTGTCTCCTTTTTCTGTT	0.378													31	7					0	0	0.002445	0	0
HS3ST5	222537	broad.mit.edu	37	6	114379098	114379098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:114379098C>T	uc003pwg.3	-	2	396	c.364G>A	c.(364-366)GAA>AAA	p.E122K	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.E122K	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	122	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		AAGTGGATTTCTTGAGAGGCT	0.443													39	17					0	0	0.007835	0	0
COL10A1	1300	broad.mit.edu	37	6	116442158	116442158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:116442158C>T	uc003pwm.2	-	3	1217	c.1121G>A	c.(1120-1122)GGG>GAG	p.G374E	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	374	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		ACCCTTAGCCCCAGGGTATCC	0.592													5	21					0	0	0.001168	0	0
ROS1	6098	broad.mit.edu	37	6	117700232	117700232	+	Missense_Mutation	SNP	G	A	A	rs146533107		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:117700232G>A	uc003pxp.1	-	17	2786	c.2587C>T	c.(2587-2589)CGG>TGG	p.R863W	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	863	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTCTGTCCCCGAAGAACAGCT	0.373			T	GOPC|ROS1	glioblastoma|NSCLC								24	8					0	0	0.003954	0	0
RSPO3	84870	broad.mit.edu	37	6	127476437	127476437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:127476437G>A	uc003qar.2	+	4	778	c.488G>A	c.(487-489)GGA>GAA	p.G163E	RSPO3_uc003qas.1_Missense_Mutation_p.G163E	NM_032784	NP_116173	Q9BXY4	RSPO3_HUMAN	R-spondin 3 precursor	163	TSP type-1.					extracellular region	heparin binding				0				GBM - Glioblastoma multiforme(226;0.0555)		ACGAAGAAGGGAAAAACATGT	0.463													28	77					0	0	0.006320	0	0
THEMIS	387357	broad.mit.edu	37	6	128134340	128134340	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:128134340C>T	uc003qbi.2	-	5	1765	c.1446G>A	c.(1444-1446)GAG>GAA	p.E482E	THEMIS_uc010kfa.2_Silent_p.E385E|THEMIS_uc011ebt.1_Silent_p.E482E|THEMIS_uc010kfb.2_Silent_p.E447E	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	482	CABIT 2.			E -> K (in Ref. 1; BAG53994).	negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TAATGTCCTCCTCCAACTGCA	0.493													27	10					0	0	0.004656	0	0
THEMIS	387357	broad.mit.edu	37	6	128134948	128134948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:128134948C>T	uc003qbi.2	-	5	1157	c.838G>A	c.(838-840)GAG>AAG	p.E280K	THEMIS_uc010kfa.2_Missense_Mutation_p.E183K|THEMIS_uc011ebt.1_Missense_Mutation_p.E280K|THEMIS_uc010kfb.2_Missense_Mutation_p.E245K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	280	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						ATGGGGAACTCTTTACTAGTC	0.408													69	19					0	0	0.003610	0	0
THEMIS	387357	broad.mit.edu	37	6	128135035	128135035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:128135035C>T	uc003qbi.2	-	5	1070	c.751G>A	c.(751-753)GAA>AAA	p.E251K	THEMIS_uc010kfa.2_Missense_Mutation_p.E154K|THEMIS_uc011ebt.1_Missense_Mutation_p.E251K|THEMIS_uc010kfb.2_Missense_Mutation_p.E216K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	251	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCTTTGACTTCGACATCTAGA	0.348													61	16					0	0	0.003610	0	0
ENPP3	5169	broad.mit.edu	37	6	131973708	131973708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:131973708C>T	uc003qcu.3	+	5	651	c.304C>T	c.(304-306)CGT>TGT	p.R102C	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Missense_Mutation_p.R68C|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.R102C	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	102	Extracellular (Potential).|SMB 2.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		CAATAAATTTCGTTGTGGAGA	0.378													24	32					0	0	0.003954	0	0
MOXD1	26002	broad.mit.edu	37	6	132645139	132645139	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:132645139G>A	uc003qdf.2	-	7	1143	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	MOXD1_uc003qde.2_Silent_p.F280F	NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	348	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		GGATGGTATGGAAGAGGCTCA	0.488													19	32					0	0	0.007413	0	0
EYA4	2070	broad.mit.edu	37	6	133833883	133833883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:133833883G>A	uc003qec.3	+	15	1764	c.1306G>A	c.(1306-1308)GAT>AAT	p.D436N	EYA4_uc011ecq.1_Missense_Mutation_p.D382N|EYA4_uc011ecr.1_Missense_Mutation_p.D388N|EYA4_uc003qed.3_Missense_Mutation_p.D436N|EYA4_uc003qee.3_Missense_Mutation_p.D413N|EYA4_uc011ecs.1_Missense_Mutation_p.D442N|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	436					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TCATATAGATGATGTTTCCTC	0.368													36	16					0	0	0.005524	0	0
TCF21	6943	broad.mit.edu	37	6	134210675	134210675	+	Missense_Mutation	SNP	G	A	A	rs144842546		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:134210675G>A	uc003qei.3	+	1	416	c.140G>A	c.(139-141)GGG>GAG	p.G47E	uc003qeg.1_5'Flank|TCF21_uc003qej.2_Missense_Mutation_p.G47E	NM_003206	NP_003197	O43680	TCF21_HUMAN	transcription factor 21	47					branching involved in ureteric bud morphogenesis|mesoderm development|negative regulation of androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus	androgen receptor binding|E-box binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity				0	Colorectal(23;0.221)|Breast(56;0.247)			GBM - Glioblastoma multiforme(68;0.00518)|OV - Ovarian serous cystadenocarcinoma(155;0.00783)		TGCGAGAATGGGTCTCCCCAG	0.602													11	8					0	0	0.000978	0	0
BCLAF1	9774	broad.mit.edu	37	6	136589383	136589383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136589383C>T	uc003qgx.1	-	10	2567	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K	BCLAF1_uc011edb.1_Missense_Mutation_p.E100K|BCLAF1_uc003qgw.1_Missense_Mutation_p.E599K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E770K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E770K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	772					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTTCTCTTTCCTTCTTACTC	0.388													20	65					0	0	0.003954	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597445	136597445	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136597445C>T	uc003qgx.1	-	5	1471	c.1218G>A	c.(1216-1218)GAG>GAA	p.E406E	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Silent_p.E404E|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.E404E	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	406					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTCTATAATCCTCTGTCTCCT	0.428													77	205					0	0	0.003610	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597558	136597558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136597558C>T	uc003qgx.1	-	5	1358	c.1105G>A	c.(1105-1107)GGG>AGG	p.G369R	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.G367R|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.G367R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	369					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTGCCCTCCCTTTCTCTGAT	0.428													66	168					0	0	0.003610	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599265	136599265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136599265G>A	uc003qgx.1	-	4	1007	c.754C>T	c.(754-756)CAC>TAC	p.H252Y	BCLAF1_uc003qgw.1_Missense_Mutation_p.H252Y|BCLAF1_uc003qgy.1_Missense_Mutation_p.H250Y|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.H250Y	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	252					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTTGCAGAGTGAACTGTACTG	0.438													13	74					0	0	0.004007	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599532	136599532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136599532C>T	uc003qgx.1	-	4	740	c.487G>A	c.(487-489)GAA>AAA	p.E163K	BCLAF1_uc003qgw.1_Missense_Mutation_p.E163K|BCLAF1_uc003qgy.1_Missense_Mutation_p.E161K|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E161K	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	163					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GTTTGTTTTTCCTGAGACCCT	0.433													33	175					0	0	0.003755	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599586	136599586	+	Missense_Mutation	SNP	G	A	A	rs146404127		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:136599586G>A	uc003qgx.1	-	4	686	c.433C>T	c.(433-435)CGT>TGT	p.R145C	BCLAF1_uc003qgw.1_Missense_Mutation_p.R145C|BCLAF1_uc003qgy.1_Missense_Mutation_p.R143C|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.R143C	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	145	Poly-Ser.				induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		GATGAAGAACGAGAAGAGGAT	0.443													40	213					0	0	0.006230	0	0
RAET1G	353091	broad.mit.edu	37	6	150240791	150240791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:150240791C>T	uc010kii.1	-	2	315	c.247G>A	c.(247-249)GTC>ATC	p.V83I	RAET1G_uc003qnm.2_RNA	NM_001001788	NP_001001788	Q6H3X3	RET1G_HUMAN	retinoic acid early transcript 1G precursor	83	MHC class I alpha-1 like.|Extracellular (Potential).				antigen processing and presentation|immune response	integral to membrane|MHC class I protein complex	protein binding				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.73e-12)		GCCGTTGTGACATTTAGTTTC	0.493													45	102					0	0	0.003610	0	0
ULBP3	79465	broad.mit.edu	37	6	150387223	150387223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:150387223C>T	uc003qns.3	-	2	164	c.164G>A	c.(163-165)AGC>AAC	p.S55N	ULBP3_uc011eej.1_5'Flank|ULBP3_uc011eek.1_Intron	NM_024518	NP_078794	Q9BZM4	N2DL3_HUMAN	UL16 binding protein 3 precursor	55	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation	anchored to membrane|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.12)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.45e-12)		ATCCACCTGGCTCTGGACCTC	0.463													51	17					0	0	0.003610	0	0
PPP1R14C	81706	broad.mit.edu	37	6	150535922	150535922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:150535922C>T	uc003qnt.2	+	2	490	c.349C>T	c.(349-351)CTT>TTT	p.L117F		NM_030949	NP_112211	Q8TAE6	PP14C_HUMAN	protein phosphatase 1, regulatory (inhibitor)	117					regulation of phosphorylation	cytoplasm|membrane					0		Ovarian(120;0.0284)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;9.14e-12)		TGATGATCTTCTTGATGCAGA	0.413													23	38					0	0	0.006320	0	0
SYNE1	23345	broad.mit.edu	37	6	152461226	152461226	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:152461226G>A	uc010kiw.2	-	140	25919	c.25317C>T	c.(25315-25317)CTC>CTT	p.L8439L	SYNE1_uc010kiv.2_Silent_p.L2963L|SYNE1_uc003qos.3_Silent_p.L2963L|SYNE1_uc003qot.3_Silent_p.L8391L|SYNE1_uc003qou.3_Silent_p.L8439L|SYNE1_uc003qop.3_Silent_p.L624L|SYNE1_uc011eez.1_Silent_p.L641L|SYNE1_uc003qoq.3_Silent_p.L641L|SYNE1_uc003qor.3_Silent_p.L1362L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8439	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCCACTTCTGGAGGTTCTGCT	0.547										HNSCC(10;0.0054)			22	43					0	0	0.002299	0	0
SYNE1	23345	broad.mit.edu	37	6	152631048	152631048	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:152631048G>A	uc010kiw.2	-	90	17726	c.17124C>T	c.(17122-17124)CTC>CTT	p.L5708L	SYNE1_uc010kiv.2_Silent_p.L232L|SYNE1_uc003qos.3_Silent_p.L232L|SYNE1_uc003qot.3_Silent_p.L5637L|SYNE1_uc003qou.3_Silent_p.L5708L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5708	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGCATGACAGAGAGGTAAGC	0.607										HNSCC(10;0.0054)			27	10					0	0	0.006320	0	0
SYNE1	23345	broad.mit.edu	37	6	152690746	152690746	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:152690746G>A	uc010kiw.2	-	60	10113	c.9511C>T	c.(9511-9513)CTA>TTA	p.L3171L	SYNE1_uc003qot.3_Silent_p.L3178L|SYNE1_uc003qou.3_Silent_p.L3171L|SYNE1_uc010kja.1_5'UTR|SYNE1_uc003qov.2_Silent_p.L249L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3171	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGGATCTTTAGATTCTGCAAG	0.398										HNSCC(10;0.0054)			17	7					0	0	0.004990	0	0
SYNE1	23345	broad.mit.edu	37	6	152861132	152861132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:152861132C>T	uc010kiw.2	-	4	694	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	SYNE1_uc003qot.3_Missense_Mutation_p.R31Q|SYNE1_uc003qou.3_Missense_Mutation_p.R31Q|SYNE1_uc010kjb.1_Missense_Mutation_p.R31Q|SYNE1_uc003qpa.1_Missense_Mutation_p.R31Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	31	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGTGAAAGTTCGTTTTTGTAC	0.338										HNSCC(10;0.0054)			74	21					0	0	0.003610	0	0
TULP4	56995	broad.mit.edu	37	6	158924013	158924013	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:158924013C>T	uc003qrf.2	+	13	4675	c.3318C>T	c.(3316-3318)CAC>CAT	p.H1106H	TULP4_uc003qrg.2_Intron	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	1106					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		CCTTGAGGCACCCTCCCCTGC	0.632													24	15					0	0	0.005443	0	0
SYTL3	94120	broad.mit.edu	37	6	159146619	159146619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:159146619C>T	uc003qrp.2	+	10	1049	c.805C>T	c.(805-807)CTC>TTC	p.L269F	SYTL3_uc011efp.1_Missense_Mutation_p.L269F|SYTL3_uc003qro.2_Missense_Mutation_p.L201F|SYTL3_uc003qrq.2_Missense_Mutation_p.L201F|SYTL3_uc003qrr.2_Missense_Mutation_p.L269F|SYTL3_uc003qrs.2_Missense_Mutation_p.L201F|SYTL3_uc011efq.1_Intron	NM_001009991	NP_001009991	Q4VX76	SYTL3_HUMAN	synaptotagmin-like 3	269					intracellular protein transport	endomembrane system|membrane	Rab GTPase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.54e-17)|BRCA - Breast invasive adenocarcinoma(81;8.24e-06)		GCAACAGAATCTCCCATCCAG	0.388													106	35					0	0	0.003610	0	0
FNDC1	84624	broad.mit.edu	37	6	159636168	159636168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:159636168G>A	uc010kjv.2	+	5	852	c.652G>A	c.(652-654)GAA>AAA	p.E218K	FNDC1_uc010kjw.1_Missense_Mutation_p.E166K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	218	Fibronectin type-III 2.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		ACGGACACACGAAATTAAAAA	0.433													10	34					0	0	0.000978	0	0
SLC22A2	6582	broad.mit.edu	37	6	160671648	160671648	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:160671648C>T	uc003qtf.2	-	3	775	c.605G>A	c.(604-606)TGG>TAG	p.W202*	SLC22A2_uc003qte.1_Nonsense_Mutation_p.W202*|SLC22A2_uc003qth.1_Nonsense_Mutation_p.W202*	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	202	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		AATTAACATCCACGTATAGGT	0.458													42	15					0	0	0.002522	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679775	160679775	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:160679775C>T	uc003qtf.2	-	1	185	c.15G>A	c.(13-15)GTG>GTA	p.V5V	SLC22A2_uc003qte.1_Silent_p.V5V|SLC22A2_uc003qth.1_Silent_p.V5V	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	5	Cytoplasmic (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GGACATCGTCCACGGTGGTGG	0.617													18	1					0	0	0.001216	0	0
LPA	4018	broad.mit.edu	37	6	160978556	160978556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:160978556G>A	uc003qtl.2	-	30	4799	c.4679C>T	c.(4678-4680)CCC>CTC	p.P1560L		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4068	Kringle 36.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GTAACACCAGGGTTGTTTCCC	0.493													38	9					0	0	0.005524	0	0
LPA	4018	broad.mit.edu	37	6	161006211	161006211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:161006211G>A	uc003qtl.2	-	27	4276	c.4156C>T	c.(4156-4158)CAG>TAG	p.Q1386*		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3894	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TAGCAGTCCTGGACCCCAGTG	0.433													86	21					0	0	0.003610	0	0
T	6862	broad.mit.edu	37	6	166571986	166571986	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:166571986G>A	uc003quu.1	-	9	1618	c.1125C>T	c.(1123-1125)TTC>TTT	p.F375F	T_uc003qut.1_Silent_p.F376F|T_uc003quv.1_Silent_p.F317F	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	375					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		AGCCCCGGAAGAACTGGGCCC	0.701									Chordoma_Familial_Clustering_of				20	1					0	0	0.007413	0	0
TTLL2	83887	broad.mit.edu	37	6	167754894	167754894	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:167754894G>A	uc003qvs.1	+	3	1594	c.1506G>A	c.(1504-1506)AGG>AGA	p.R502R	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	502					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TGTCAACAAGGGAGATGCCAC	0.562													22	12					0	0	0.002299	0	0
THBS2	7058	broad.mit.edu	37	6	169648794	169648794	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:169648794G>A	uc003qwt.2	-	4	575	c.327C>T	c.(325-327)TCC>TCT	p.S109S		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	109	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		ACTGCCTCTGGGAGAGACCGG	0.647													22	31					0	0	0.002780	0	0
ZFAND2A	90637	broad.mit.edu	37	7	1195110	1195110	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:1195110G>A	uc003skc.2	-	4	562	c.261C>T	c.(259-261)CAC>CAT	p.H87H	ZFAND2A_uc003skd.3_Silent_p.H87H	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	87						cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		TCTTCCCAGGGTGAGAGTCAC	0.502													98	55					0	0	0.003610	0	0
EIF3B	8662	broad.mit.edu	37	7	2402736	2402736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:2402736C>T	uc003slx.2	+	4	927	c.844C>T	c.(844-846)CCA>TCA	p.P282S	EIF3B_uc003sly.2_Missense_Mutation_p.P282S|EIF3B_uc003slz.1_Missense_Mutation_p.P243S|EIF3B_uc003sma.2_Missense_Mutation_p.P10S	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	282	Sufficient for interaction with EIF3E.				regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		GTGGGATATTCCAGAGAAACA	0.428													93	231					0	0	0.003610	0	0
SDK1	221935	broad.mit.edu	37	7	4008917	4008917	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:4008917C>T	uc003smx.2	+	11	1714	c.1575C>T	c.(1573-1575)GTC>GTT	p.V525V		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	525	Ig-like C2-type 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GTGGCTCTGTCCGGATTCCTA	0.507													116	580					0	0	0.003610	0	0
RADIL	55698	broad.mit.edu	37	7	4839353	4839353	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:4839353C>T	uc003snj.1	-	14	3203	c.3030G>A	c.(3028-3030)CCG>CCA	p.P1010P	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Silent_p.P515P|RADIL_uc011jwc.1_Silent_p.P770P|RADIL_uc011jwd.1_RNA|RADIL_uc003snh.1_Silent_p.P306P	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	1010	PDZ.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		CGGGGCTGCCCGGGAGCAGGG	0.716													12	3					0	0	0.002450	0	0
MMD2	221938	broad.mit.edu	37	7	4949534	4949534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:4949534G>A	uc003sno.3	-	6	783	c.587C>T	c.(586-588)CCC>CTC	p.P196L	MMD2_uc003snl.1_RNA|MMD2_uc003snn.3_Missense_Mutation_p.P172L|MMD2_uc010ksq.2_Missense_Mutation_p.P172L	NM_001100600	NP_001094070	Q8IY49	PAQRA_HUMAN	monocyte to macrophage	196	Helical; (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.097)|OV - Ovarian serous cystadenocarcinoma(56;3.4e-14)		GACCAGGGCGGGGAAGAAGCC	0.478													14	16					0	0	0.002450	0	0
RBAK	57786	broad.mit.edu	37	7	5104889	5104889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:5104889G>A	uc010kss.1	+	6	2126	c.1802G>A	c.(1801-1803)GGA>GAA	p.G601E	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.G601E	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	601	C2H2-type 13.|Interaction with AR.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		TACGAATGTGGAAAATTCTTC	0.393													35	23					0	0	0.004289	0	0
SLC29A4	222962	broad.mit.edu	37	7	5334529	5334530	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:5334529_5334530CC>TT	uc003sod.2	+	6	744_745	c.583_584CC>TT	c.(583-585)CCC>TTC	p.P195F	SLC29A4_uc011jwg.1_RNA|SLC29A4_uc003soc.2_Missense_Mutation_p.P195F|SLC29A4_uc003soe.2_Missense_Mutation_p.P181F	NM_153247	NP_694979	Q7RTT9	S29A4_HUMAN	solute carrier family 29 (nucleoside	195	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|integral to membrane	nucleoside transmembrane transporter activity			liver(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0903)|OV - Ovarian serous cystadenocarcinoma(56;2.65e-15)		GGGGATGCTGCCCAAGCGGTAC	0.505													108	120					0	0	0.004672	0	0
COL28A1	340267	broad.mit.edu	37	7	7571422	7571422	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:7571422G>A	uc003src.1	-	3	355	c.238C>T	c.(238-240)CAA>TAA	p.Q80*	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	80	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GGAGTCAATTGGAAAATCTTG	0.413													14	114					0	0	0.004990	0	0
GLCCI1	113263	broad.mit.edu	37	7	8110708	8110708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:8110708C>T	uc003srk.2	+	6	1683	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	375											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		CCCCCGGAATCCCAGGATGGT	0.502													123	82					0	0	0.003610	0	0
THSD7A	221981	broad.mit.edu	37	7	11676536	11676536	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:11676536C>T	uc003ssf.3	-	2	495	c.243G>A	c.(241-243)ACG>ACA	p.T81T		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	81	TSP type-1 1.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACACAGCCCTCGTTTGGATGC	0.458										HNSCC(18;0.044)			48	120					0	0	0.003610	0	0
ETV1	2115	broad.mit.edu	37	7	13971235	13971235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:13971235G>A	uc011jxq.1	-	9	1433	c.694C>T	c.(694-696)CAC>TAC	p.H232Y	ETV1_uc011jxn.1_Missense_Mutation_p.H192Y|ETV1_uc011jxo.1_Missense_Mutation_p.H129Y|ETV1_uc011jxp.1_Missense_Mutation_p.H174Y|ETV1_uc003ssw.3_Missense_Mutation_p.H232Y|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.H214Y|ETV1_uc011jxs.1_Missense_Mutation_p.H214Y|ETV1_uc010ktv.2_Missense_Mutation_p.H101Y	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	232					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						ACTGGGTCGTGGTACTCCTGC	0.522			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								45	25					0	0	0.003610	0	0
DGKB	1607	broad.mit.edu	37	7	14378178	14378178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:14378178G>A	uc003ssz.2	-	22	2274	c.2087C>T	c.(2086-2088)ACC>ATC	p.T696I	DGKB_uc011jxt.1_Missense_Mutation_p.T677I|DGKB_uc003sta.2_Missense_Mutation_p.T696I|DGKB_uc011jxu.1_Missense_Mutation_p.T695I	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	696					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	ATCTGTGACGGTGGTCCTTTT	0.393													136	99					0	0	0.003610	0	0
DGKB	1607	broad.mit.edu	37	7	14613992	14613992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:14613992C>T	uc003ssz.2	-	19	1805	c.1618G>A	c.(1618-1620)GAA>AAA	p.E540K	DGKB_uc011jxt.1_Missense_Mutation_p.E521K|DGKB_uc003sta.2_Missense_Mutation_p.E540K|DGKB_uc011jxu.1_Missense_Mutation_p.E539K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	540	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TTCTCACCTTCGTAACCTAGT	0.323													22	115					0	0	0.002299	0	0
TSPAN13	27075	broad.mit.edu	37	7	16823074	16823074	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:16823074G>A	uc003stq.2	+	6	815	c.573G>A	c.(571-573)AGG>AGA	p.R191R		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	191	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		ACAGATACAGGAACCAGAAAG	0.358													71	202					0	0	0.003610	0	0
AGR2	10551	broad.mit.edu	37	7	16832568	16832568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:16832568C>T	uc003str.2	-	8	679	c.492G>A	c.(490-492)ATG>ATA	p.M164I		NM_006408	NP_006399	O95994	AGR2_HUMAN	anterior gradient 2 homolog precursor	164					mucus secretion	endoplasmic reticulum|extracellular region	protein binding				0	Lung NSC(10;0.0376)|all_lung(11;0.0855)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		GAGCTTTCTTCATGTTGTCAA	0.408													11	89					0	0	0.001855	0	0
HDAC9	9734	broad.mit.edu	37	7	18687443	18687443	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:18687443G>A	uc003suh.2	+	9	1103	c.1062G>A	c.(1060-1062)GAG>GAA	p.E354E	HDAC9_uc003sue.2_Silent_p.E354E|HDAC9_uc011jyd.1_Silent_p.E354E|HDAC9_uc003sui.2_Silent_p.E357E|HDAC9_uc003suj.2_Silent_p.E313E|HDAC9_uc011jya.1_Silent_p.E351E|HDAC9_uc003sua.1_Silent_p.E332E|HDAC9_uc011jyb.1_Silent_p.E310E|HDAC9_uc003sud.1_Silent_p.E354E|HDAC9_uc011jyc.1_Silent_p.E313E|HDAC9_uc003suf.1_Silent_p.E385E|HDAC9_uc010kud.1_Silent_p.E357E|HDAC9_uc011jye.1_Silent_p.E326E|HDAC9_uc011jyf.1_Silent_p.E277E|HDAC9_uc010kue.1_Silent_p.E97E	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	354					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AGAAGTGTGAGACGCAGACGC	0.483													4	28					0	0	0.000602	0	0
HDAC9	9734	broad.mit.edu	37	7	18688206	18688206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:18688206C>T	uc003suh.2	+	10	1399	c.1358C>T	c.(1357-1359)CCT>CTT	p.P453L	HDAC9_uc003sue.2_Missense_Mutation_p.P453L|HDAC9_uc011jyd.1_Missense_Mutation_p.P453L|HDAC9_uc003sui.2_Missense_Mutation_p.P456L|HDAC9_uc003suj.2_Missense_Mutation_p.P412L|HDAC9_uc011jya.1_Missense_Mutation_p.P450L|HDAC9_uc003sua.1_Missense_Mutation_p.P431L|HDAC9_uc011jyb.1_Missense_Mutation_p.P409L|HDAC9_uc003sud.1_Missense_Mutation_p.P453L|HDAC9_uc011jyc.1_Missense_Mutation_p.P412L|HDAC9_uc003suf.1_Missense_Mutation_p.P484L|HDAC9_uc010kud.1_Missense_Mutation_p.P456L|HDAC9_uc011jye.1_Missense_Mutation_p.P425L|HDAC9_uc011jyf.1_Missense_Mutation_p.P376L|HDAC9_uc010kue.1_Missense_Mutation_p.P196L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	453					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	CAGTCTGCACCTTTGCCTCAG	0.507													28	69					0	0	0.005443	0	0
HDAC9	9734	broad.mit.edu	37	7	18767315	18767315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:18767315C>T	uc003suh.2	+	12	1876	c.1835C>T	c.(1834-1836)TCC>TTC	p.S612F	HDAC9_uc003sue.2_Missense_Mutation_p.S612F|HDAC9_uc011jyd.1_Missense_Mutation_p.S612F|HDAC9_uc003sui.2_Missense_Mutation_p.S615F|HDAC9_uc003suj.2_Missense_Mutation_p.S571F|HDAC9_uc003sua.1_Missense_Mutation_p.S590F|HDAC9_uc010kue.1_Missense_Mutation_p.S267F	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	612					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ACTCACTCTTCCCCTGCTGCC	0.587													14	16					0	0	0.002450	0	0
HDAC9	9734	broad.mit.edu	37	7	18801862	18801862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:18801862C>T	uc003suh.2	+	14	2158	c.2117C>T	c.(2116-2118)CCC>CTC	p.P706L	HDAC9_uc003sue.2_Missense_Mutation_p.P706L|HDAC9_uc011jyd.1_Missense_Mutation_p.P706L|HDAC9_uc003sui.2_Missense_Mutation_p.P709L|HDAC9_uc003suj.2_Missense_Mutation_p.P665L|HDAC9_uc003sua.1_Missense_Mutation_p.P684L	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	706	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	GGCACCAACCCCCTGGACGGA	0.502													8	49					0	0	0.004482	0	0
ABCB5	340273	broad.mit.edu	37	7	20778753	20778753	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:20778753G>A	uc003suw.3	+	15	2226	c.1680G>A	c.(1678-1680)GGG>GGA	p.G560G	ABCB5_uc010kuh.2_Silent_p.G1005G	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	560	Cytoplasmic (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GTCAAGAAGGGAAAAAGCCAG	0.308													5	12					0	0	0.000602	0	0
ABCB5	340273	broad.mit.edu	37	7	20793056	20793056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:20793056G>A	uc003suw.3	+	18	2714	c.2168G>A	c.(2167-2169)AGG>AAG	p.R723K	ABCB5_uc010kuh.2_Missense_Mutation_p.R1168K	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	723	Cytoplasmic (Potential).|ABC transporter 2.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GCTATTGCAAGGGCTCTTCTC	0.408													63	45					0	0	0.003610	0	0
RPL23P8	222901	broad.mit.edu	37	7	20866925	20866925	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:20866925C>T	uc011jyj.1	+	1		c.9C>T				NR_026673				Homo sapiens ribosomal protein L23 pseudogene 8 (RPL23P8), non-coding RNA.												0						TGTCCTTTTTCCTTCTTTCCA	0.418													6	12					0	0	0.001168	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22202140	22202140	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:22202140G>A	uc003svg.2	-	13	1157	c.844C>T	c.(844-846)CAA>TAA	p.Q282*	RAPGEF5_uc011jyl.1_5'UTR	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	132	N-terminal Ras-GEF.				nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCTTTGCCTTGATACTTCTTA	0.338													14	70					0	0	0.001855	0	0
MPP6	51678	broad.mit.edu	37	7	24681479	24681479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:24681479C>T	uc003swx.2	+	4	561	c.262C>T	c.(262-264)CAC>TAC	p.H88Y	MPP6_uc003swy.2_Missense_Mutation_p.H88Y	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	88	L27 2.				protein complex assembly		protein binding				0						CAAAGAACCTCACTTCCAGGT	0.363													32	73					0	0	0.003755	0	0
MPP6	51678	broad.mit.edu	37	7	24690151	24690151	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:24690151C>A	uc003swx.2	+	6	770	c.471C>A	c.(469-471)ATC>ATA	p.I157I	MPP6_uc003swy.2_Silent_p.I157I	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	157	PDZ.				protein complex assembly		protein binding				0						TTGCCCGAATCCTCCATGGGG	0.358													28	57					1.22384e-17	1.78367e-17	0.002836	1	0
MPP6	51678	broad.mit.edu	37	7	24705212	24705212	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:24705212C>T	uc003swx.2	+	8	1088	c.789C>T	c.(787-789)AGC>AGT	p.S263S	MPP6_uc003swy.2_Silent_p.S263S|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	263	SH3.				protein complex assembly		protein binding				0						TCTAGGCTAGCCATGTAAAAG	0.408													31	93					0	0	0.001786	0	0
HOXA4	3201	broad.mit.edu	37	7	27168851	27168851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:27168851G>A	uc003sym.3	-	2	1003	c.956C>T	c.(955-957)TCC>TTC	p.S319F	HOXA3_uc003syk.2_5'Flank	NM_002141	NP_002132	Q00056	HXA4_HUMAN	homeobox A4	319						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						AGATTATAtggaggagggaac	0.383													23	44					0	0	0.002299	0	0
INMT	11185	broad.mit.edu	37	7	30795310	30795310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:30795310C>T	uc003tbs.1	+	3	651	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S211F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	212						cytoplasm	amine N-methyltransferase activity				0						CGTGAATTTTCCTGCGTGGCC	0.597													22	53					0	0	0.002780	0	0
FAM188B	84182	broad.mit.edu	37	7	30825437	30825437	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:30825437C>T	uc003tbt.2	+	4	569	c.492C>T	c.(490-492)CCC>CCT	p.P164P	FAM188B_uc010kwe.2_Silent_p.P135P	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	164											0						AAAGTAAGCCCATGCAGACGG	0.448													36	118					0	0	0.003271	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31142941	31142941	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:31142941G>A	uc003tca.1	+	14	1360	c.1137G>A	c.(1135-1137)AGG>AGA	p.R379R	ADCYAP1R1_uc003tcb.1_Silent_p.R358R|ADCYAP1R1_uc003tcc.1_Silent_p.R407R|ADCYAP1R1_uc003tcd.1_Silent_p.R407R|ADCYAP1R1_uc003tce.1_Silent_p.R406R|ADCYAP1R1_uc003tcf.1_Silent_p.R137R	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	379	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TCAGCAAAAGGGAAAGACTCG	0.587													16	120					0	0	0.003163	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378227	31378227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:31378227G>A	uc003tch.2	-	2	1009	c.656C>T	c.(655-657)CCC>CTC	p.P219L		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	219					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						ATGCCCTGGGGGAGTGGTGAG	0.527													32	92					0	0	0.005524	0	0
PDE1C	5137	broad.mit.edu	37	7	31855735	31855735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:31855735G>A	uc003tcm.1	-	15	2085	c.1616C>T	c.(1615-1617)GCT>GTT	p.A539V	PDE1C_uc003tcn.1_Missense_Mutation_p.A539V|PDE1C_uc003tco.1_Missense_Mutation_p.A599V|PDE1C_uc003tcr.2_Missense_Mutation_p.A539V|PDE1C_uc003tcs.2_Missense_Mutation_p.A539V	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	539					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GGCCAGGCGAGCCTTTTCCTC	0.512													61	123					0	0	0.003610	0	0
PDE1C	5137	broad.mit.edu	37	7	31855742	31855742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:31855742C>T	uc003tcm.1	-	15	2078	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K	PDE1C_uc003tcn.1_Missense_Mutation_p.E537K|PDE1C_uc003tco.1_Missense_Mutation_p.E597K|PDE1C_uc003tcr.2_Missense_Mutation_p.E537K|PDE1C_uc003tcs.2_Missense_Mutation_p.E537K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	537					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CGAGCCTTTTCCTCTGCTTCC	0.517													51	126					0	0	0.003610	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909261	32909261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:32909261G>A	uc003tdb.2	-	4	2227	c.1568C>T	c.(1567-1569)CCC>CTC	p.P523L	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	523	Kelch 4.										0			GBM - Glioblastoma multiforme(11;0.0499)			TCTAACACAGGGGTCAGAGTA	0.423													98	60					0	0	0.003610	0	0
BMPER	168667	broad.mit.edu	37	7	34091542	34091542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:34091542C>T	uc011kap.1	+	8	860	c.746C>T	c.(745-747)TCC>TTC	p.S249F		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	249	VWFC 4.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GACAATGGATCCTCATTTCTG	0.463													134	102					0	0	0.003610	0	0
TBX20	57057	broad.mit.edu	37	7	35284647	35284647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:35284647G>A	uc011kas.1	-	4	579	c.568C>T	c.(568-570)CCT>TCT	p.P190S		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	190	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						CCGGTAAAAGGAGAATCTGGA	0.373													17	31					0	0	0.004990	0	0
TBX20	57057	broad.mit.edu	37	7	35288374	35288374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:35288374G>A	uc011kas.1	-	3	471	c.460C>T	c.(460-462)CCT>TCT	p.P154S		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	154	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						TTGTCCACAGGGACGATGTCC	0.602													15	93					0	0	0.004007	0	0
EEPD1	80820	broad.mit.edu	37	7	36327374	36327374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:36327374G>A	uc003tfa.2	+	6	1943	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	435					DNA repair		DNA binding				0						GACCCTACAGGAAACCCTGAA	0.562													21	115					0	0	0.001882	0	0
AOAH	313	broad.mit.edu	37	7	36657921	36657921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:36657921C>T	uc003tfh.3	-	10	1134	c.733G>A	c.(733-735)GAG>AAG	p.E245K	AOAH_uc010kxf.2_Missense_Mutation_p.E245K|AOAH_uc011kba.1_Missense_Mutation_p.E213K	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	245					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						AATTTCTTCTCATATGGAACT	0.338													30	92					0	0	0.002445	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907312	37907312	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:37907312C>T	uc003tfn.2	+	11	1002	c.630C>T	c.(628-630)TTC>TTT	p.F210F		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	210	NDK 1.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGTGTGACTTCGAAGAGTTTG	0.388									Kartagener_syndrome				18	57					0	0	0.001523	0	0
TXNDC3	51314	broad.mit.edu	37	7	37927900	37927900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:37927900G>A	uc003tfn.2	+	15	1641	c.1269G>A	c.(1267-1269)ATG>ATA	p.M423I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	423	NDK 2.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGTTTGCGATGGACAGTTTGC	0.363									Kartagener_syndrome				30	78					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	7	39894274	39894274	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:39894274G>A	uc003thg.2	-	1		c.586C>T								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		AGTTTCAATTGAGATGATATT	0.378													42	138					0	0	0.002852	0	0
HECW1	23072	broad.mit.edu	37	7	43508575	43508575	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:43508575C>T	uc003tid.1	+	16	3575	c.2970C>T	c.(2968-2970)GTC>GTT	p.V990V	HECW1_uc011kbi.1_Silent_p.V956V	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	990					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TTCTGAAAGTCCGACGGGATG	0.547													28	68					0	0	0.006320	0	0
URGCP	55665	broad.mit.edu	37	7	43917086	43917086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:43917086G>A	uc003tiw.2	-	6	2033	c.1976C>T	c.(1975-1977)CCT>CTT	p.P659L	URGCP_uc003tiu.2_Missense_Mutation_p.P616L|URGCP_uc003tiv.2_Missense_Mutation_p.P584L|URGCP_uc003tix.2_Missense_Mutation_p.P650L|URGCP_uc003tiy.2_Missense_Mutation_p.P616L|URGCP_uc003tiz.2_Missense_Mutation_p.P616L|URGCP_uc011kbj.1_Missense_Mutation_p.P616L	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	659					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						TAGCTCCAGAGGCAGCCCTGT	0.652													41	12					0	0	0.006999	0	0
URGCP	55665	broad.mit.edu	37	7	43918514	43918514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:43918514G>A	uc003tiw.2	-	6	605	c.548C>T	c.(547-549)CCC>CTC	p.P183L	URGCP_uc003tiu.2_Missense_Mutation_p.P140L|URGCP_uc003tiv.2_Missense_Mutation_p.P108L|URGCP_uc003tix.2_Missense_Mutation_p.P174L|URGCP_uc003tiy.2_Missense_Mutation_p.P140L|URGCP_uc003tiz.2_Missense_Mutation_p.P140L|URGCP_uc011kbj.1_Missense_Mutation_p.P140L	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	183					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						AAGGTCTAAGGGGTTCACTGG	0.527													41	24					0	0	0.007835	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579502	44579502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:44579502G>A	uc003tlb.2	-	2	550	c.494C>T	c.(493-495)GCC>GTC	p.A165V	NPC1L1_uc003tlc.2_Missense_Mutation_p.A165V|NPC1L1_uc011kbw.1_Missense_Mutation_p.A165V|NPC1L1_uc003tld.2_Missense_Mutation_p.A165V	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	165	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GCTCTGCTCGGCAAAGCTATG	0.602													48	24					0	0	0.003610	0	0
OGDH	4967	broad.mit.edu	37	7	44684995	44684995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:44684995C>T	uc003tln.2	+	3	401	c.292C>T	c.(292-294)CCC>TCC	p.P98S	OGDH_uc003tlm.2_Missense_Mutation_p.P98S|OGDH_uc011kbx.1_Missense_Mutation_p.P98S|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Missense_Mutation_p.P98S|OGDH_uc011kbz.1_5'UTR|OGDH_uc003tlo.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	98					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	GAGTCCCCTTCCCCTGAGCCG	0.587													62	139					0	0	0.003610	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44795866	44795866	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:44795866C>T	uc003tlr.2	+	2	141	c.18C>T	c.(16-18)CCC>CCT	p.P6P	ZMIZ2_uc003tlq.2_Silent_p.P6P|ZMIZ2_uc003tls.2_Silent_p.P6P	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	6					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCATGAACCCCATGAAACCTG	0.607													23	78					0	0	0.007291	0	0
MYO1G	64005	broad.mit.edu	37	7	45009048	45009048	+	Missense_Mutation	SNP	C	T	T	rs141469545		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:45009048C>T	uc003tmh.2	-	12	1682	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q	MYO1G_uc003tmf.2_5'Flank|MYO1G_uc003tmg.2_Missense_Mutation_p.R275Q|MYO1G_uc010kym.2_Missense_Mutation_p.R398Q|MYO1G_uc003tmi.1_Missense_Mutation_p.R425Q|MYO1G_uc003tmj.2_Missense_Mutation_p.R275Q	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	513	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						CCGGAAGTCTCGGCCAAACTC	0.582													49	146					0	0	0.003610	0	0
PKD1L1	168507	broad.mit.edu	37	7	47874793	47874793	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:47874793G>A	uc003tny.1	-	38	5992	c.5992C>T	c.(5992-5994)CTG>TTG	p.L1998L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1998	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGGGTACACAGGAGACCCACC	0.572													30	19					0	0	0.003755	0	0
PKD1L1	168507	broad.mit.edu	37	7	47930226	47930226	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:47930226G>A	uc003tny.1	-	16	2589	c.2589C>T	c.(2587-2589)TTC>TTT	p.F863F		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	863	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						GCATCACAAGGAACTGATCAT	0.582													22	67					0	0	0.001523	0	0
ABCA13	154664	broad.mit.edu	37	7	48318944	48318944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:48318944C>T	uc003toq.2	+	18	8178	c.8153C>T	c.(8152-8154)CCT>CTT	p.P2718L	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2718				P -> L (in Ref. 1; AAP13576).	transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GAAGTGATCCCTTTTTTGGAT	0.338													3	20					0	0	0.004672	0	0
ABCA13	154664	broad.mit.edu	37	7	48356767	48356767	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:48356767G>A	uc003toq.2	+	27	9898	c.9873G>A	c.(9871-9873)TTG>TTA	p.L3291L	ABCA13_uc010kys.1_Silent_p.L365L|ABCA13_uc003tos.1_Silent_p.L117L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3291					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CGTTTTGCTTGAAGCTTTATC	0.378													14	36					0	0	0.002450	0	0
DDC	1644	broad.mit.edu	37	7	50531040	50531040	+	Silent	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:50531040A>G	uc003tpf.3	-	14	1418	c.1332T>C	c.(1330-1332)TTT>TTC	p.F444F	DDC_uc010kza.2_Silent_p.F359F|DDC_uc003tpg.3_Silent_p.F444F	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	444					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	AGCGCAGGACAAACTTGTCCC	0.527													18	64					0	0	0.006122	0	0
DDC	1644	broad.mit.edu	37	7	50605624	50605624	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:50605624C>T	uc003tpf.3	-	4	455	c.369G>A	c.(367-369)GGG>GGA	p.G123G	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Silent_p.G123G	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	123	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CCAGCATCTTCCCGAGCCAGT	0.562													32	71					0	0	0.003271	0	0
DDC	1644	broad.mit.edu	37	7	50607616	50607616	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:50607616G>A	uc003tpf.3	-	3	398	c.312C>T	c.(310-312)TCC>TCT	p.S104S	DDC_uc010kza.2_Silent_p.S104S|DDC_uc003tpg.3_Silent_p.S104S	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	104	1.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CCCTCACCCAGGAGAAGCCGA	0.652													7	33					0	0	0.003080	0	0
COBL	23242	broad.mit.edu	37	7	51111119	51111119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:51111119G>A	uc003tpr.3	-	8	1552	c.1367C>T	c.(1366-1368)CCC>CTC	p.P456L	COBL_uc003tps.2_Missense_Mutation_p.P513L|COBL_uc011kcl.1_Missense_Mutation_p.P456L|COBL_uc010kzc.2_Missense_Mutation_p.P456L|COBL_uc003tpp.3_Missense_Mutation_p.P242L|COBL_uc003tpq.3_Missense_Mutation_p.P397L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	456										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTCCCACAAGGGGCTCTTCTG	0.552													45	111					0	0	0.003610	0	0
POM121L12	285877	broad.mit.edu	37	7	53103958	53103958	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:53103958C>T	uc003tpz.2	+	1	610	c.594C>T	c.(592-594)TTC>TTT	p.F198F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	198											0						CGTTGTGGTTCGAGGTCTCAG	0.637													32	80					0	0	0.003755	0	0
EGFR	1956	broad.mit.edu	37	7	55240814	55240814	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:55240814G>A	uc003tqk.2	+	17	2304	c.2058G>A	c.(2056-2058)AGG>AGA	p.R686R	EGFR_uc010kzg.1_Silent_p.R641R|EGFR_uc011kco.1_Silent_p.R633R	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	686	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGCAGGAGAGGGAGGTGAGTG	0.647		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			43	33					0	0	0.003610	0	0
EGFR	1956	broad.mit.edu	37	7	55269037	55269037	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:55269037C>T	uc003tqk.2	+	25	3349	c.3103C>T	c.(3103-3105)CTG>TTG	p.L1035L	EGFR_uc010kzg.1_Silent_p.L990L|EGFR_uc011kco.1_Silent_p.L982L	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	1035	Cytoplasmic (Potential).|Ser-rich.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GACTCCCCTCCTGAGCTCTCT	0.488		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			33	83					0	0	0.002445	0	0
ZNF713	349075	broad.mit.edu	37	7	56006825	56006825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:56006825C>T	uc003trc.1	+	4	457	c.419C>T	c.(418-420)CCA>CTA	p.P140L	ZNF713_uc003tra.1_Missense_Mutation_p.P153L|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GATTACCATCCAGAGTTTAAC	0.408													9	53					0	0	0.000673	0	0
ZNF479	90827	broad.mit.edu	37	7	57193792	57193792	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:57193792G>A	uc010kzo.2	-	4	466	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	65	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			CCAGACAGGTGATCAAGTCTG	0.363													115	61					0	0	0.003610	0	0
ZNF479	90827	broad.mit.edu	37	7	57194352	57194352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:57194352C>T	uc010kzo.2	-	3	384	c.113G>A	c.(112-114)CGG>CAG	p.R38Q		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	38	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			ATATAAATTCCGCTGAGCACA	0.398													31	109					0	0	0.006230	0	0
ZNF679	168417	broad.mit.edu	37	7	63726795	63726795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:63726795C>T	uc003tsx.2	+	5	1053	c.784C>T	c.(784-786)CAT>TAT	p.H262Y		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	262	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TAGGAGAATTCATACTGGAGA	0.418													34	22					0	0	0.003755	0	0
INTS4L1	285905	broad.mit.edu	37	7	64643370	64643370	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:64643370C>T	uc003ttw.2	+	6		c.777C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						CAGAGATATTCGAGAGGCTCT	0.398													17	6					0	0	0.002299	0	0
KCTD7	154881	broad.mit.edu	37	7	66104087	66104087	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:66104087C>T	uc003tve.2	+	4	900	c.738C>T	c.(736-738)CAC>CAT	p.H246H	RABGEF1_uc003tvf.2_Intron|KCTD7_uc003tvd.3_Silent_p.H246H	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	246						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						ACCTGCTGCACTGCCTGGTCA	0.592													97	48					0	0	0.003610	0	0
AUTS2	26053	broad.mit.edu	37	7	70231110	70231110	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:70231110C>T	uc003tvw.3	+	9	2222	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	AUTS2_uc003tvx.3_Silent_p.I493I|AUTS2_uc011keg.1_5'Flank	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	493										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		AGCAAGACATCTTGCGACAGG	0.567													29	61					0	0	0.002096	0	0
CALN1	83698	broad.mit.edu	37	7	71743780	71743780	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:71743780G>A	uc003twa.3	-	2	536	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CALN1_uc003twb.3_Silent_p.F45F|CALN1_uc003twc.3_Silent_p.F3F	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	3	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				TCACATGGTGGAACGGCATCT	0.498													12	38					0	0	0.001855	0	0
POM121	9883	broad.mit.edu	37	7	72413666	72413666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:72413666C>T	uc003twk.2	+	11	3134	c.3134C>T	c.(3133-3135)TCG>TTG	p.S1045L	POM121_uc003twj.2_Missense_Mutation_p.S780L|POM121_uc010lam.1_Missense_Mutation_p.S780L	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1045	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				GCCACGGCTTCGGCCTTCGGC	0.647													32	127					0	0	0.002836	0	0
POM121	9883	broad.mit.edu	37	7	72413956	72413956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:72413956C>T	uc003twk.2	+	11	3424	c.3424C>T	c.(3424-3426)CCC>TCC	p.P1142S	POM121_uc003twj.2_Missense_Mutation_p.P877S|POM121_uc010lam.1_Missense_Mutation_p.P877S	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1142	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CACCTCCACCCCCTTCGCAGG	0.612													18	37					0	0	0.007291	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657494	72657494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:72657494C>T	uc003txs.1	-	13	2418	c.1490G>A	c.(1489-1491)GGA>GAA	p.G497E	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ttctggtattcccaccttgtc	0													83	175					0	0	0.003610	0	0
CLDN4	1364	broad.mit.edu	37	7	73245539	73245539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:73245539C>T	uc003tzi.3	+	1	347	c.8C>T	c.(7-9)TCC>TTC	p.S3F	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	3	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				ACAATGGCCTCCATGGGGCTA	0.657													63	31					0	0	0.003610	0	0
WBSCR28	135886	broad.mit.edu	37	7	73275540	73275540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:73275540C>T	uc003tzk.2	+	1	52	c.16C>T	c.(16-18)CCA>TCA	p.P6S	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	6						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				GGCCCTTCCTCCAGTCAGATC	0.617													56	34					0	0	0.003610	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73961534	73961534	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:73961534C>T	uc003uaq.2	+	17	2227	c.1834C>T	c.(1834-1836)CTC>TTC	p.L612F	GTF2IRD1_uc010lbq.2_Missense_Mutation_p.L644F|GTF2IRD1_uc003uap.2_Missense_Mutation_p.L612F|GTF2IRD1_uc003uar.1_Missense_Mutation_p.L612F	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	612	GTF2I-like 3.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						AGGCATCTCCCTCCGCAGGCC	0.587													22	45					0	0	0.001882	0	0
GTF2I	2969	broad.mit.edu	37	7	74146864	74146864	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:74146864C>G	uc003uau.2	+	15	1535	c.1165C>G	c.(1165-1167)CTT>GTT	p.L389V	GTF2I_uc003uav.2_Missense_Mutation_p.L368V|GTF2I_uc003uaw.2_Missense_Mutation_p.L369V|GTF2I_uc003uay.2_Missense_Mutation_p.L367V|GTF2I_uc003uax.2_Missense_Mutation_p.L348V	NM_032999	NP_127492	P78347	GTF2I_HUMAN	general transcription factor IIi isoform 1	389	GTF2I-like 2.				negative regulation of angiogenesis|signal transduction|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						CCCGTACCCTCTTTTCCAGTC	0.403													78	62					0	0	0.003610	0	0
GTF2I	2969	broad.mit.edu	37	7	74146890	74146890	+	Silent	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:74146890T>A	uc003uau.2	+	15	1561	c.1191T>A	c.(1189-1191)CTT>CTA	p.L397L	GTF2I_uc003uav.2_Silent_p.L376L|GTF2I_uc003uaw.2_Silent_p.L377L|GTF2I_uc003uay.2_Silent_p.L375L|GTF2I_uc003uax.2_Silent_p.L356L	NM_032999	NP_127492	P78347	GTF2I_HUMAN	general transcription factor IIi isoform 1	397	GTF2I-like 2.				negative regulation of angiogenesis|signal transduction|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						TTGAAGATCTTTATGTAGAAG	0.423													69	58					0	0	0.003610	0	0
RHBDD2	57414	broad.mit.edu	37	7	75517586	75517587	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:75517586_75517587CC>TT	uc003udw.1	+	4	1098_1099	c.1014_1015CC>TT	c.(1012-1017)AGCCCT>AGTTCT	p.P339S	RHBDD2_uc003udv.1_Missense_Mutation_p.P198S	NM_001040456	NP_001035546	Q6NTF9	RHBD2_HUMAN	rhomboid domain containing 2 isoform a	339						integral to membrane	serine-type endopeptidase activity				0						CTGTGAACAGCCCTGGCACGGT	0.619													128	70					0	0	0.004672	0	0
STYXL1	51657	broad.mit.edu	37	7	75643088	75643089	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:75643088_75643089CG>AT	uc003uej.3	-	5	597_598	c.424_425CG>AT	c.(424-426)CGG>ATG	p.R142M	STYXL1_uc011kgf.1_Intron|STYXL1_uc011kgg.1_Translation_Start_Site|STYXL1_uc003ueh.2_Intron|STYXL1_uc003uek.3_Intron|STYXL1_uc003uel.2_Missense_Mutation_p.R142M|STYXL1_uc003uem.2_Missense_Mutation_p.R142M|STYXL1_uc010ldg.1_Intron|STYXL1_uc010ldh.1_Missense_Mutation_p.R142M|STYXL1_uc003uen.1_Missense_Mutation_p.R142M	NM_016086	NP_057170	Q9Y6J8	STYL1_HUMAN	map kinase phosphatase-like protein MK-STYX	142					intracellular signal transduction|protein dephosphorylation	intracellular	protein binding|protein tyrosine/serine/threonine phosphatase activity				0						CTTCTGGGTCCGGAGAAAGTGG	0.579													8	478					0	0	0.004672	0	0
PION	54103	broad.mit.edu	37	7	76943801	76943801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:76943801G>A	uc003ugf.2	-	27	2174	c.2095C>T	c.(2095-2097)CAT>TAT	p.H699Y	PION_uc011kgo.1_Missense_Mutation_p.H20Y|PION_uc003ugd.2_Missense_Mutation_p.H93Y	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	699					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						TGCAGAGTATGAAAACCTAGG	0.483													103	9					0	0	0.003610	0	0
GNAT3	346562	broad.mit.edu	37	7	80091847	80091847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:80091847C>T	uc011kgu.1	-	6	691	c.691G>A	c.(691-693)GAC>AAC	p.D231N	CD36_uc003uhc.2_Intron	NM_001102386	NP_001095856	A8MTJ3	GNAT3_HUMAN	guanine nucleotide binding protein, alpha	231					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|rhodopsin mediated phototransduction|sensory perception of sweet taste|sensory perception of umami taste	cytoplasm|heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)	1						AGGACCATGTCATAGGCACTA	0.403													126	8					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82538248	82538248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:82538248C>T	uc003uhx.2	-	8	13671	c.13382G>A	c.(13381-13383)CGA>CAA	p.R4461Q	PCLO_uc003uhv.2_Missense_Mutation_p.R4461Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4392					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CGGCAGTTTTCGGTCCAGACC	0.418													102	6					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82545000	82545000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:82545000G>A	uc003uhx.2	-	7	12591	c.12302C>T	c.(12301-12303)TCC>TTC	p.S4101F	PCLO_uc003uhv.2_Missense_Mutation_p.S4101F|PCLO_uc010lec.2_Missense_Mutation_p.S1066F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4032					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAATCTAGAGGAAGACTGTAA	0.438													9	27					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82546144	82546144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:82546144C>T	uc003uhx.2	-	7	11447	c.11158G>A	c.(11158-11160)GTT>ATT	p.V3720I	PCLO_uc003uhv.2_Missense_Mutation_p.V3720I|PCLO_uc010lec.2_Missense_Mutation_p.V685I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3651					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTTCTTTTAACTTTTTTCTGG	0.383													161	10					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82582033	82582033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:82582033C>T	uc003uhx.2	-	5	8525	c.8236G>A	c.(8236-8238)GAT>AAT	p.D2746N	PCLO_uc003uhv.2_Missense_Mutation_p.D2746N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2677					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCAGAAAGATCAATACATTTA	0.348													5	49					0	0	0.000602	0	0
PCLO	27445	broad.mit.edu	37	7	82582368	82582368	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:82582368G>A	uc003uhx.2	-	5	8190	c.7901C>T	c.(7900-7902)TCT>TTT	p.S2634F	PCLO_uc003uhv.2_Missense_Mutation_p.S2634F|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2565					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGTTCTGAAGAAATTGGAAT	0.453													137	11					0	0	0.003610	0	0
GRM3	2913	broad.mit.edu	37	7	86394864	86394864	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:86394864C>T	uc003uid.2	+	2	1502	c.403C>T	c.(403-405)CAA>TAA	p.Q135*	GRM3_uc010lef.2_Nonsense_Mutation_p.Q133*|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	135	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CTATGCCATTCAAGAAAACAT	0.433													26	74					0	0	0.005443	0	0
CROT	54677	broad.mit.edu	37	7	86990850	86990850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:86990850C>T	uc003uit.2	+	5	630	c.385C>T	c.(385-387)CTT>TTT	p.L129F	CROT_uc003uiu.2_Missense_Mutation_p.L157F	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	129					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	AAGTATAACTCTTTGGCATAA	0.413													6	72					0	0	0.001168	0	0
STEAP4	79689	broad.mit.edu	37	7	87913487	87913487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:87913487G>A	uc003ujs.2	-	2	203	c.98C>T	c.(97-99)TCA>TTA	p.S33L	STEAP4_uc010lek.2_Missense_Mutation_p.S33L|STEAP4_uc003ujt.2_Missense_Mutation_p.S33L	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	33					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					CAATCCCAGTGATCTTCCAAA	0.418													108	9					0	0	0.003610	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963128	88963128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:88963128G>A	uc011khi.1	+	4	1370	c.832G>A	c.(832-834)GAA>AAA	p.E278K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	278						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CCTTACCAAGGAAAAAGAGGT	0.358										HNSCC(36;0.09)			10	61					0	0	0.000673	0	0
CDK14	5218	broad.mit.edu	37	7	90741917	90741917	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:90741917G>A	uc003uky.2	+	13	1437	c.1215G>A	c.(1213-1215)AAG>AAA	p.K405K	CDK14_uc003ukz.1_Silent_p.K387K|CDK14_uc010les.1_Silent_p.K359K|CDK14_uc011khl.1_Silent_p.K276K	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	405	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						GTTCCCCAAAGAACAGACTGT	0.502													129	84					0	0	0.003610	0	0
AKAP9	10142	broad.mit.edu	37	7	91730219	91730220	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:91730219_91730220CC>TT	uc003ulg.2	+	45	11171_11172	c.10946_10947CC>TT	c.(10945-10947)GCC>GTT	p.A3649V	AKAP9_uc003ulf.2_Missense_Mutation_p.A3641V|AKAP9_uc003uli.2_Missense_Mutation_p.A3272V|AKAP9_uc003ulj.2_Missense_Mutation_p.A1419V|AKAP9_uc003ull.2_Missense_Mutation_p.A545V	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3653	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GCCATCATTGCCTCTGAAAAAG	0.406			T	BRAF	papillary thyroid								35	114					0	0	0.004672	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761585	92761585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:92761585C>T	uc003umh.1	-	5	4916	c.3700G>A	c.(3700-3702)GGA>AGA	p.G1234R	SAMD9L_uc003umj.1_Missense_Mutation_p.G1234R|SAMD9L_uc003umi.1_Missense_Mutation_p.G1234R|SAMD9L_uc010lfb.1_Missense_Mutation_p.G1234R|SAMD9L_uc003umk.1_Missense_Mutation_p.G1234R|SAMD9L_uc010lfc.1_Missense_Mutation_p.G1234R|SAMD9L_uc010lfd.1_Missense_Mutation_p.G1234R|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1234										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GTCCACTTTCCTGATAAAAAT	0.358													115	8					0	0	0.003610	0	0
CALCR	799	broad.mit.edu	37	7	93055755	93055756	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:93055755_93055756CT>TA	uc003umv.1	-	15	1700_1701	c.1439_1440AG>TA	c.(1438-1440)GAG>GTA	p.E480V	CALCR_uc011kia.1_Missense_Mutation_p.E260V|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.E446V|CALCR_uc003umw.2_Missense_Mutation_p.E446V	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	462	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CATTCCTCAGCTCCTGATGGCA	0.559													43	154					0	0	0.004672	0	0
CALCR	799	broad.mit.edu	37	7	93090138	93090138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:93090138C>T	uc003umv.1	-	9	1006	c.745G>A	c.(745-747)GAC>AAC	p.D249N	CALCR_uc011kia.1_Missense_Mutation_p.D29N|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.D215N|CALCR_uc003umw.2_Missense_Mutation_p.D215N	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	231	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CTTACCGGGTCCCTTCGCACG	0.383													101	8					0	0	0.003610	0	0
CASD1	64921	broad.mit.edu	37	7	94174937	94174937	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:94174937C>A	uc003uni.3	+	12	1784	c.1557C>A	c.(1555-1557)CCC>CCA	p.P519P	CASD1_uc003unj.3_Silent_p.P519P	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	519	Helical; (Potential).					integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			ACTTTGTCCCCTTGGTCACTG	0.333													6	116					0.00116845	0.00167919	0.001168	1	0
PPP1R9A	55607	broad.mit.edu	37	7	94540348	94540348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:94540348C>T	uc003unp.2	+	2	1205	c.923C>T	c.(922-924)TCT>TTT	p.S308F	PPP1R9A_uc010lfj.2_Missense_Mutation_p.S308F|PPP1R9A_uc011kif.1_Missense_Mutation_p.S308F|PPP1R9A_uc003unq.2_Missense_Mutation_p.S308F|PPP1R9A_uc011kig.1_Missense_Mutation_p.S308F	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	308						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GACTCCACATCTAATCAACAG	0.478										HNSCC(28;0.073)			25	53					0	0	0.003330	0	0
LMTK2	22853	broad.mit.edu	37	7	97832933	97832933	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:97832933C>T	uc003upd.1	+	12	4448	c.4155C>T	c.(4153-4155)GGC>GGT	p.G1385G		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1385					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					AGGCGTGCGGCCCGGACCTGA	0.602													10	25					0	0	0.000978	0	0
TECPR1	25851	broad.mit.edu	37	7	97874210	97874210	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:97874210G>T	uc003upg.2	-	4	600	c.395C>A	c.(394-396)CCC>CAC	p.P132H	TECPR1_uc003uph.1_Missense_Mutation_p.P53H	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	132						integral to membrane	protein binding			pancreas(1)	1						TTTCTCAGTGGGTTCACCTCC	0.642													17	35					1.2644e-06	1.82985e-06	0.001523	1	0
TRRAP	8295	broad.mit.edu	37	7	98547149	98547149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:98547149C>T	uc003upp.2	+	35	5086	c.4877C>T	c.(4876-4878)CCC>CTC	p.P1626L	TRRAP_uc011kis.1_Missense_Mutation_p.P1608L|TRRAP_uc003upr.2_Missense_Mutation_p.P1325L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1626					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GCTGTGCGCCCCGGTTCGCCC	0.647													18	41					0	0	0.001216	0	0
ARPC1B	10095	broad.mit.edu	37	7	98983391	98983391	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:98983391G>A	uc003upz.2	+	2	143	c.54G>A	c.(52-54)AAG>AAA	p.K18K	ARPC1A_uc011kit.1_RNA|ARPC1B_uc003uqa.2_Silent_p.K18K|ARPC1B_uc003uqb.2_Silent_p.K18K|ARPC1B_uc003uqc.2_Silent_p.K18K	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	18	WD 1.				cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CCTGGAACAAGGACCGCACCC	0.647													29	2					0	0	0.002096	0	0
MCM7	4176	broad.mit.edu	37	7	99693582	99693582	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:99693582G>A	uc003usw.1	-	11	1920	c.1410C>T	c.(1408-1410)GCC>GCT	p.A470A	MCM7_uc003usv.1_Silent_p.A294A|MCM7_uc003usx.1_Silent_p.A294A|uc003usy.1_5'Flank|MIR25_hsa-mir-25|MI0000082_5'Flank|uc003usz.1_5'Flank|MIR93_hsa-mir-93|MI0000095_5'Flank|uc003uta.1_5'Flank|MIR106B_hsa-mir-106b|MI0000734_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	470	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	TGCCGGCCTTGGCAATGGAGA	0.622													21	63					0	0	0.001216	0	0
MCM7	4176	broad.mit.edu	37	7	99697317	99697317	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:99697317C>T	uc003usw.1	-	3	681	c.171G>A	c.(169-171)GAG>GAA	p.E57E	MCM7_uc003usv.1_5'UTR|MCM7_uc003usx.1_5'UTR|AP4M1_uc011kjg.1_5'Flank|AP4M1_uc010lgl.1_5'Flank|AP4M1_uc003utb.3_5'Flank|AP4M1_uc003utc.3_5'Flank|AP4M1_uc010lgm.2_5'Flank|AP4M1_uc003utd.2_5'Flank|AP4M1_uc011kjh.1_5'Flank|AP4M1_uc003ute.3_5'Flank|AP4M1_uc003utf.3_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	57					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	CGGGGTCATCCTCGGCTACGT	0.557													47	118					0	0	0.003610	0	0
C7orf51	222950	broad.mit.edu	37	7	100084532	100084532	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100084532C>A	uc003uvd.1	+	3	316	c.157C>A	c.(157-159)CGG>AGG	p.R53R	C7orf51_uc003uve.1_5'Flank	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	53										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CGCCTCGCTGCGGCGCTCCCT	0.736													5	21					0.000602214	0.00086696	0.000602	1	0
LRCH4	4034	broad.mit.edu	37	7	100179430	100179430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100179430G>A	uc003uvj.2	-	4	621	c.568C>T	c.(568-570)CGG>TGG	p.R190W	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	190	LRR 7.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGGTTCCTCCGGACATTGAGG	0.493													32	69					0	0	0.002836	0	0
FBXO24	26261	broad.mit.edu	37	7	100193253	100193253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100193253G>A	uc003uvm.1	+	8	1423	c.1130G>A	c.(1129-1131)CGA>CAA	p.R377Q	FBXO24_uc003uvl.1_3'UTR|FBXO24_uc003uvn.1_Missense_Mutation_p.R72Q|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Missense_Mutation_p.R415Q|FBXO24_uc011kka.1_Missense_Mutation_p.R365Q	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	377	RCC1.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAATTTGGCCGAATCTTCATG	0.502													116	11					0	0	0.003610	0	0
ZAN	7455	broad.mit.edu	37	7	100346084	100346084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100346084C>T	uc003uwj.2	+	11	1405	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	ZAN_uc003uwk.2_Missense_Mutation_p.P414S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	414	MAM 3.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGGAGGTTTCCCTAATGCAGG	0.582													18	2					0	0	0.007413	0	0
ZAN	7455	broad.mit.edu	37	7	100350647	100350647	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100350647G>A	uc003uwj.2	+	14	3084	c.2919G>A	c.(2917-2919)ACG>ACA	p.T973T	ZAN_uc003uwk.2_Silent_p.T973T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	973	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCATCCCCACGGAAAAACTTA	0.542													31	162					0	0	0.001786	0	0
ZAN	7455	broad.mit.edu	37	7	100389760	100389760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100389760C>T	uc003uwj.2	+	42	7867	c.7702C>T	c.(7702-7704)CCC>TCC	p.P2568S	ZAN_uc003uwk.2_Missense_Mutation_p.P2568S|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.S560S	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2568	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGCCCCAGAGCCCTTCCAAGA	0.662													4	20					0	0	0.001168	0	0
ZAN	7455	broad.mit.edu	37	7	100391863	100391863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100391863C>T	uc003uwj.2	+	45	8273	c.8108C>T	c.(8107-8109)ACC>ATC	p.T2703I	ZAN_uc003uwk.2_Intron|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.T651I	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2703	VWFC 5.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGGAACCACACCCAAGGCTGC	0.647													30	133					0	0	0.002096	0	0
Unknown	0	broad.mit.edu	37	7	100551233	100551233	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100551233G>A	uc003uxk.1	+	1		c.484G>A			uc003uxl.1_5'UTR					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		AGTACTCCCAGCCTCAGTTCT	0.507													50	210					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	7	100552270	100552270	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100552270G>A	uc003uxk.1	+	1		c.1521G>A			uc003uxl.1_Missense_Mutation_p.E241K					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCCATGTGTTGAAATGGATCC	0.473													60	461					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100677939	100677939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100677939C>T	uc003uxp.1	+	3	3295	c.3242C>T	c.(3241-3243)TCA>TTA	p.S1081L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1081	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|16.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CAAGCCAGTTCATCTTCTACA	0.512													229	595					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100678579	100678579	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100678579G>A	uc003uxp.1	+	3	3935	c.3882G>A	c.(3880-3882)GAG>GAA	p.E1294E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1294	Extracellular (Potential).|Ser-rich.|19.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCAGTCCTGAGGCTAGCACCC	0.483													7	710					0	0	0.005443	0	0
MUC17	140453	broad.mit.edu	37	7	100684356	100684356	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100684356G>A	uc003uxp.1	+	3	9712	c.9659G>A	c.(9658-9660)GGA>GAA	p.G3220E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3220	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|52.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTAGTGAAGGAATGACTCCA	0.493													196	424					0	0	0.003610	0	0
MOGAT3	346606	broad.mit.edu	37	7	100839562	100839562	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100839562G>A	uc003uyc.2	-	6	944	c.777C>T	c.(775-777)CTC>CTT	p.L259L	MOGAT3_uc010lhr.2_Intron	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	259					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					AGAAGCCCATGAGCTTCTTGA	0.567													36	4					0	0	0.004289	0	0
PLOD3	8985	broad.mit.edu	37	7	100855845	100855845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:100855845G>A	uc003uyd.2	-	9	1427	c.971C>T	c.(970-972)CCC>CTC	p.P324L	PLOD3_uc010lhs.2_5'UTR	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	324					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	CCTGTCGGGGGGATAGTCCAG	0.607													92	6					0	0	0.003610	0	0
CUX1	1523	broad.mit.edu	37	7	101926061	101926061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:101926061G>A	uc003uyt.2	+	22	1979	c.1960G>A	c.(1960-1962)GCC>ACC	p.A654T	CUX1_uc011kkn.1_Missense_Mutation_p.A615T|CUX1_uc003uyw.2_Missense_Mutation_p.A608T|CUX1_uc003uyv.2_Missense_Mutation_p.A638T|CUX1_uc003uyu.2_Missense_Mutation_p.A652T|CUX1_uc003uyz.2_RNA|SH2B2_uc011kko.1_5'Flank	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	Error:Variant_position_missing_in_P39880_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CACCTTCTGCGCCAAGAAGTG	0.662													7	42					0	0	0.000673	0	0
SLC26A5	375611	broad.mit.edu	37	7	103051948	103051948	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:103051948A>C	uc003vbz.2	-	6	725	c.489T>G	c.(487-489)AAT>AAG	p.N163K	SLC26A5_uc003vbt.1_Missense_Mutation_p.N163K|SLC26A5_uc003vbu.1_Missense_Mutation_p.N163K|SLC26A5_uc003vbv.1_Missense_Mutation_p.N163K|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.N163K|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	163	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CATTGGTTGCATTTACTCCTC	0.448													80	8					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103338393	103338393	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:103338393G>A	uc003vca.2	-	10	1210	c.1050C>T	c.(1048-1050)ATC>ATT	p.I350I	RELN_uc010liz.2_Silent_p.I350I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	350					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTGAATTGATGATCAAGATGT	0.463													94	62					0	0	0.003610	0	0
LHFPL3	375612	broad.mit.edu	37	7	104377262	104377262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:104377262G>A	uc003vce.2	+	2	710	c.586G>A	c.(586-588)GGA>AGA	p.G196R	LHFPL3_uc003vcf.2_Missense_Mutation_p.G196R	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	182	Helical; (Potential).					integral to membrane					0						GGCTATTATTGGAATTTTGGA	0.458													22	30					0	0	0.002299	0	0
CBLL1	79872	broad.mit.edu	37	7	107389390	107389390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:107389390C>T	uc003veq.2	+	2	409	c.79C>T	c.(79-81)CCT>TCT	p.P27S	CBLL1_uc011kme.1_5'UTR|CBLL1_uc011kmf.1_Missense_Mutation_p.P27S	NM_024814	NP_079090	Q75N03	HAKAI_HUMAN	Cas-Br-M (murine) ecotropic retroviral	27					cell-cell adhesion|negative regulation of cell adhesion|positive regulation of cell migration|positive regulation of endocytosis		protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|skin(2)|lung(1)	5						CAGACGAATTCCTATAAAGCT	0.418													53	122					0	0	0.003610	0	0
LAMB1	3912	broad.mit.edu	37	7	107576057	107576058	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:107576057_107576058CC>TT	uc003vew.2	-	27	4325_4326	c.3990_3991GG>AA	c.(3988-3993)GAGGCA>GAAACA	p.A1331T	LAMB1_uc003vev.2_Missense_Mutation_p.A1355T	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1331	Domain II.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTCCTCTGCCTCAAGAGACA	0.505													189	20					0	0	0.004672	0	0
LAMB4	22798	broad.mit.edu	37	7	107688391	107688391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:107688391G>A	uc010ljo.1	-	28	4372	c.4288C>T	c.(4288-4290)CGT>TGT	p.R1430C	LAMB4_uc003vey.2_Missense_Mutation_p.R1430C|LAMB4_uc010ljp.1_Missense_Mutation_p.R399C	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1430	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TCCAAATTACGAATAATGGAT	0.448													128	17					0	0	0.003610	0	0
NRCAM	4897	broad.mit.edu	37	7	107807505	107807505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:107807505C>T	uc003vfb.2	-	30	3798	c.3327G>A	c.(3325-3327)TGG>TGA	p.W1109*	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1109	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						TTTCTTTTCTCCATTCTTCTT	0.378													29	3					0	0	0.001786	0	0
DOCK4	9732	broad.mit.edu	37	7	111430560	111430560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:111430560G>A	uc003vfx.2	-	31	3537	c.3268C>T	c.(3268-3270)CAT>TAT	p.H1090Y	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Missense_Mutation_p.H531Y|DOCK4_uc003vfy.2_Missense_Mutation_p.H1126Y	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1090					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				ATCATATCATGAAAAATTGGA	0.483													20	55					0	0	0.002299	0	0
DOCK4	9732	broad.mit.edu	37	7	111584865	111584865	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:111584865C>T	uc003vfx.2	-	10	1113	c.844_splice	c.e10+1	p.G282_splice	DOCK4_uc003vfy.2_Splice_Site_p.G282_splice|DOCK4_uc003vga.1_Splice_Site|DOCK4_uc010ljt.1_Splice_Site_p.G282_splice	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4						cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GTTATACCTACCGATTCGGAT	0.403													28	49					0	0	0.001786	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519652	113519652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:113519652C>T	uc010ljy.1	-	4	1526	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	499					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TCTGTTGATTCTTTGAGACAT	0.318													12	41					0	0	0.000978	0	0
CFTR	1080	broad.mit.edu	37	7	117149196	117149196	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:117149196G>A	uc003vjd.2	+	3	405	c.273G>A	c.(271-273)GGG>GGA	p.G91G	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	91	Helical; Name=1; (Potential).|ABC transmembrane type-1 1.		G -> R (in CF).		respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TATATTTAGGGGTAAGGATCT	0.308									Cystic_Fibrosis				14	119					0	0	0.001855	0	0
AASS	10157	broad.mit.edu	37	7	121773576	121773576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:121773576C>T	uc003vka.2	-	1	301	c.205G>A	c.(205-207)GAT>AAT	p.D69N	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.D69N|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	69	Lysine-ketoglutarate reductase.				protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	CTCACCTTATCATGAATGGCC	0.423													13	72					0	0	0.001855	0	0
FEZF1	389549	broad.mit.edu	37	7	121943722	121943722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:121943722G>A	uc003vkd.2	-	1	844	c.770C>T	c.(769-771)CCC>CTC	p.P257L	FEZF1_uc003vkc.2_Missense_Mutation_p.P207L|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	257					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						GAAAACTTTGGGCTTGGCATT	0.383													191	18					0	0	0.003610	0	0
SLC13A1	6561	broad.mit.edu	37	7	122787233	122787233	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:122787233G>A	uc003vkm.2	-	7	817	c.792C>T	c.(790-792)ATC>ATT	p.I264I	SLC13A1_uc010lks.2_Silent_p.I140I	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	264						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	ACTCTGCAAAGATCAAGTTGG	0.388													39	3					0	0	0.002222	0	0
HYAL4	23553	broad.mit.edu	37	7	123509273	123509273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:123509273C>T	uc003vlc.2	+	3	1584	c.946C>T	c.(946-948)CTT>TTT	p.L316F	HYAL4_uc011knz.1_Missense_Mutation_p.L316F	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	316	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TTTATTTTTCCTTTCTAAGGT	0.383													11	23					0	0	0.001368	0	0
GRM8	2918	broad.mit.edu	37	7	126173412	126173412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:126173412C>T	uc003vlr.2	-	8	2335	c.2024G>A	c.(2023-2025)CGA>CAA	p.R675Q	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.R675Q|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	675	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CTCAAATATTCGGTGGATACG	0.502										HNSCC(24;0.065)			18	128					0	0	0.001216	0	0
GRM8	2918	broad.mit.edu	37	7	126173566	126173566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:126173566C>T	uc003vlr.2	-	8	2181	c.1870G>A	c.(1870-1872)GTG>ATG	p.V624M	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.V624M|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	624	Helical; Name=2; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GTTAGGAGCACGTAACTAAGT	0.458										HNSCC(24;0.065)			60	26					0	0	0.003610	0	0
FSCN3	29999	broad.mit.edu	37	7	127236431	127236431	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:127236431C>T	uc003vmd.1	+	3	1110	c.891C>T	c.(889-891)TTC>TTT	p.F297F	FSCN3_uc011koh.1_Silent_p.F163F|FSCN3_uc010llc.1_Silent_p.F297F	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	297						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TGTCCTTGTTCCAGTTTGAAT	0.542													37	225					0	0	0.004878	0	0
SND1	27044	broad.mit.edu	37	7	127341362	127341362	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:127341362C>T	uc003vmi.2	+	5	800	c.574C>T	c.(574-576)CAG>TAG	p.Q192*		NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	192					gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CTCACACCACCAGAAGCCTGT	0.463													75	7					0	0	0.003610	0	0
SND1	27044	broad.mit.edu	37	7	127729645	127729645	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:127729645C>T	uc003vmi.2	+	22	2749	c.2523C>T	c.(2521-2523)ACC>ACT	p.T841T	SND1_uc010lle.2_Silent_p.T494T	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	841					gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						CCCATGTCACCCTGCAGTTTG	0.597													25	77					0	0	0.003330	0	0
FLNC	2318	broad.mit.edu	37	7	128484222	128484222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:128484222G>A	uc003vnz.3	+	20	3303	c.3094G>A	c.(3094-3096)GAG>AAG	p.E1032K	FLNC_uc003voa.3_Missense_Mutation_p.E1032K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1032	Filamin 8.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CATGCCCCCGGAGGAGGGGCC	0.662													24	28					0	0	0.002780	0	0
TSPAN33	340348	broad.mit.edu	37	7	128802353	128802354	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:128802353_128802354CC>TT	uc003vop.1	+	3	508_509	c.279_280CC>TT	c.(277-282)CTCCTG>CTTTTG	p.93_94LL>LL		NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	93_94	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						ACATCTGCCTCCTGCAGACGGT	0.614													7	53					0	0	0.004672	0	0
NRF1	4899	broad.mit.edu	37	7	129350218	129350218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:129350218C>T	uc003voz.2	+	7	887	c.770C>T	c.(769-771)TCA>TTA	p.S257L	NRF1_uc003vpa.2_Missense_Mutation_p.S257L|NRF1_uc011kpa.1_Missense_Mutation_p.S96L|NRF1_uc003vpb.2_Missense_Mutation_p.S257L	NM_005011	NP_005002	Q16656	NRF1_HUMAN	nuclear respiratory factor 1	257					generation of precursor metabolites and energy|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						TGACAGGTTTCATGGACCCAG	0.408													91	12					0	0	0.003610	0	0
KLHDC10	23008	broad.mit.edu	37	7	129760665	129760665	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:129760665C>T	uc003vpj.1	+	4	687	c.552C>T	c.(550-552)GTC>GTT	p.V184V	KLHDC10_uc003vpk.1_Silent_p.V155V|KLHDC10_uc010lmb.1_Silent_p.V81V	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	184	Kelch 2.										0						GCAATGACGTCCATGTGTGTA	0.483													36	177					0	0	0.004878	0	0
TMEM209	84928	broad.mit.edu	37	7	129832562	129832562	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:129832562G>A	uc003vpn.2	-	6	798	c.675C>T	c.(673-675)GTC>GTT	p.V225V	TMEM209_uc010lmc.1_Silent_p.V225V	NM_032842	NP_116231	Q96SK2	TM209_HUMAN	transmembrane protein 209	225						integral to membrane				ovary(2)|large_intestine(1)	3	Melanoma(18;0.0435)					GTGAGTTGTAGACGGTAGGTG	0.498													9	71					0	0	0.004482	0	0
CPA1	1357	broad.mit.edu	37	7	130023288	130023288	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:130023288C>T	uc003vpx.2	+	5	612	c.540C>T	c.(538-540)TCC>TCT	p.S180S	CPA1_uc011kpf.1_Silent_p.S92S|CPA1_uc003vpw.2_Intron	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	180	Substrate binding.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					GCATCCATTCCCGGGAGTGGG	0.617													17	52					0	0	0.001882	0	0
PLXNA4	91584	broad.mit.edu	37	7	131887528	131887528	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:131887528G>A	uc003vra.3	-	12	2692	c.2463C>T	c.(2461-2463)TTC>TTT	p.F821F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	821	PSI 3.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGCCACATGCGAAGTCTGGGT	0.637													28	4					0	0	0.007291	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192412	132192412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:132192412C>T	uc003vra.3	-	2	1270	c.1041G>A	c.(1039-1041)ATG>ATA	p.M347I	PLXNA4_uc003vrc.2_Missense_Mutation_p.M347I|PLXNA4_uc003vrb.2_Missense_Mutation_p.M347I	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	347	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCAGGGATTTCATTTTCCGCT	0.567													58	38					0	0	0.003610	0	0
EXOC4	60412	broad.mit.edu	37	7	133041131	133041132	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:133041131_133041132CC>TT	uc003vrk.2	+	6	846_847	c.811_812CC>TT	c.(811-813)CCA>TTA	p.P271L	EXOC4_uc011kpo.1_Missense_Mutation_p.P170L|EXOC4_uc003vri.2_Missense_Mutation_p.P271L|EXOC4_uc003vrj.2_Missense_Mutation_p.P271L	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	271					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				AGAATTGGATCCAGAGGAAAAC	0.401													12	74					0	0	0.004672	0	0
AKR1B15	441282	broad.mit.edu	37	7	134252964	134252964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:134252964C>T	uc011kpr.1	+	4	504	c.205C>T	c.(205-207)CGC>TGC	p.R69C	AKR1B15_uc003vrt.2_Missense_Mutation_p.R41C|AKR1B15_uc011kps.1_Missense_Mutation_p.R41C	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	69							oxidoreductase activity			ovary(1)	1						TGCAGAATATCGCCACATTGA	0.438													33	88					0	0	0.002445	0	0
NUP205	23165	broad.mit.edu	37	7	135300760	135300760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:135300760C>T	uc003vsw.2	+	24	3438	c.3407C>T	c.(3406-3408)ACC>ATC	p.T1136I		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1136					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						CGGTCACATACCCAGAGGCTC	0.428													15	105					0	0	0.006122	0	0
CHRM2	1129	broad.mit.edu	37	7	136700260	136700260	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:136700260G>A	uc003vtf.1	+	4	1271	c.648G>A	c.(646-648)AGG>AGA	p.R216R	CHRM2_uc003vtg.1_Silent_p.R216R|CHRM2_uc003vtj.1_Silent_p.R216R|CHRM2_uc003vtk.1_Silent_p.R216R|CHRM2_uc003vtl.1_Silent_p.R216R|CHRM2_uc003vtm.1_Silent_p.R216R|CHRM2_uc003vti.1_Silent_p.R216R|CHRM2_uc003vto.1_Silent_p.R216R|CHRM2_uc003vtn.1_Silent_p.R216R|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	216	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GCAAGAGCAGGATAAAGAAGG	0.478													44	4					0	0	0.001951	0	0
CHRM2	1129	broad.mit.edu	37	7	136700301	136700301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:136700301C>T	uc003vtf.1	+	4	1312	c.689C>T	c.(688-690)CCC>CTC	p.P230L	CHRM2_uc003vtg.1_Missense_Mutation_p.P230L|CHRM2_uc003vtj.1_Missense_Mutation_p.P230L|CHRM2_uc003vtk.1_Missense_Mutation_p.P230L|CHRM2_uc003vtl.1_Missense_Mutation_p.P230L|CHRM2_uc003vtm.1_Missense_Mutation_p.P230L|CHRM2_uc003vti.1_Missense_Mutation_p.P230L|CHRM2_uc003vto.1_Missense_Mutation_p.P230L|CHRM2_uc003vtn.1_Missense_Mutation_p.P230L|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	230	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	AACCAAGACCCCGTTTCTCCA	0.488													4	37					0	0	0.000602	0	0
CHRM2	1129	broad.mit.edu	37	7	136700369	136700369	+	Missense_Mutation	SNP	G	A	A	rs140681489	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:136700369G>A	uc003vtf.1	+	4	1380	c.757G>A	c.(757-759)GAT>AAT	p.D253N	CHRM2_uc003vtg.1_Missense_Mutation_p.D253N|CHRM2_uc003vtj.1_Missense_Mutation_p.D253N|CHRM2_uc003vtk.1_Missense_Mutation_p.D253N|CHRM2_uc003vtl.1_Missense_Mutation_p.D253N|CHRM2_uc003vtm.1_Missense_Mutation_p.D253N|CHRM2_uc003vti.1_Missense_Mutation_p.D253N|CHRM2_uc003vto.1_Missense_Mutation_p.D253N|CHRM2_uc003vtn.1_Missense_Mutation_p.D253N|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	253	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CAGCAGTGACGATGGCCTGGA	0.512													40	6					0	0	0.007835	0	0
DGKI	9162	broad.mit.edu	37	7	137271913	137271913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:137271913G>A	uc003vtt.2	-	13	1356	c.1355C>T	c.(1354-1356)CCT>CTT	p.P452L	DGKI_uc003vtu.2_Missense_Mutation_p.P152L	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	452	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						AGGAGGCTGAGGGCTCAGCTG	0.537													15	95					0	0	0.003163	0	0
CREB3L2	64764	broad.mit.edu	37	7	137590524	137590524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:137590524G>A	uc003vtw.2	-	6	1234	c.839C>T	c.(838-840)CCC>CTC	p.P280L	CREB3L2_uc003vtx.1_Missense_Mutation_p.P280L|CREB3L2_uc003vtv.2_Missense_Mutation_p.P217L	NM_194071	NP_919047	Q70SY1	CR3L2_HUMAN	cAMP responsive element binding protein 3-like	280	Cytoplasmic (Potential).				chondrocyte differentiation|positive regulation of transcription, DNA-dependent|response to endoplasmic reticulum stress|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	cAMP response element binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L2(158)	soft_tissue(158)|upper_aerodigestive_tract(1)|ovary(1)	160						GGTGGGGATGGGATAGCCCTC	0.517			T	FUS	fibromyxoid sarcoma								70	201					0	0	0.003610	0	0
SVOPL	136306	broad.mit.edu	37	7	138305826	138305826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:138305826G>A	uc011kqh.1	-	13	1318	c.1318C>T	c.(1318-1320)CGC>TGC	p.R440C	SVOPL_uc003vue.2_Missense_Mutation_p.R288C	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	440	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						GCACCAATGCGACACAGGGAG	0.582													31	6					0	0	0.006230	0	0
TTC26	79989	broad.mit.edu	37	7	138819479	138819480	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:138819479_138819480CC>TT	uc003vus.2	+	2	196_197	c.82_83CC>TT	c.(82-84)CCA>TTA	p.P28L	TTC26_uc003vuq.2_Missense_Mutation_p.P28L|TTC26_uc011kqm.1_Missense_Mutation_p.P28L|TTC26_uc003vur.3_Missense_Mutation_p.P28L|TTC26_uc011kqn.1_Missense_Mutation_p.P28L|TTC26_uc011kqo.1_Missense_Mutation_p.P28L|TTC26_uc011kqp.1_Intron|TTC26_uc003vut.2_5'UTR|TTC26_uc011kqq.1_Missense_Mutation_p.P28L	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	28							binding			ovary(1)	1						TAGGAAGATTCCAAAACTAGAG	0.426													15	48					0	0	0.004672	0	0
JHDM1D	80853	broad.mit.edu	37	7	139826443	139826443	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:139826443G>A	uc003vvm.2	-	6	886	c.882C>T	c.(880-882)GTC>GTT	p.V294V		NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	294	JmjC.				midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TTACCCAGAGGACATGGTACC	0.373													15	97					0	0	0.007413	0	0
MGAM	8972	broad.mit.edu	37	7	141752100	141752100	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:141752100A>T	uc003vwy.2	+	25	2866	c.2812A>T	c.(2812-2814)ATT>TTT	p.I938F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	938	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACAGGTTGCCATTATCACAGA	0.358													21	4					0	0	0.002299	0	0
MGAM	8972	broad.mit.edu	37	7	141800622	141800622	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:141800622T>C	uc003vwy.2	+	45	5261	c.5207T>C	c.(5206-5208)TTC>TCC	p.F1736S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1736	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTCATGGGCTTCAAAATTGCC	0.478													8	34					0	0	0.004482	0	0
EPHB6	2051	broad.mit.edu	37	7	142562473	142562473	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:142562473C>T	uc011kst.1	+	7	1702	c.915C>T	c.(913-915)TAC>TAT	p.Y305Y	EPHB6_uc011ksu.1_Silent_p.Y305Y|EPHB6_uc003wbs.2_Silent_p.Y13Y|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Silent_p.Y13Y|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	305	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					AGCCTGGATACCAACCAGCAC	0.672													89	9					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142572893	142572893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:142572893C>T	uc003wbx.1	-	9	1363	c.1147G>A	c.(1147-1149)GAT>AAT	p.D383N	TRPV6_uc003wbw.1_Missense_Mutation_p.D169N|TRPV6_uc010lou.1_Missense_Mutation_p.D254N	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	383	Extracellular (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					AGCCGGATATCGTCCTTAGGG	0.572													33	110					0	0	0.004878	0	0
TRPV5	56302	broad.mit.edu	37	7	142627202	142627202	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:142627202C>T	uc003wby.1	-	3	564	c.300G>A	c.(298-300)GAG>GAA	p.E100E	TRPV5_uc003wbz.2_Silent_p.E100E	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	100	Cytoplasmic (Potential).|ANK 2.				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CTGGGGCAGCCTCCATCAGCA	0.552													15	122					0	0	0.003163	0	0
GSTK1	373156	broad.mit.edu	37	7	142960620	142960620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:142960620C>T	uc003wci.2	+	1	99	c.14C>T	c.(13-15)CCG>CTG	p.P5L	GSTK1_uc011ksy.1_Missense_Mutation_p.P5L|GSTK1_uc003wcj.2_Missense_Mutation_p.P5L|GSTK1_uc011ksz.1_Missense_Mutation_p.P5L	NM_015917	NP_057001	Q9Y2Q3	GSTK1_HUMAN	glutathione S-transferase kappa 1 isoform a	5						outer membrane-bounded periplasmic space|peroxisome	glutathione transferase activity|identical protein binding|protein disulfide oxidoreductase activity				0	Melanoma(164;0.059)				Glutathione(DB00143)	GGGCCCCTGCCGCGCACCGTG	0.677													31	98					0	0	0.004289	0	0
OR2F2	135948	broad.mit.edu	37	7	143632574	143632574	+	Silent	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:143632574A>C	uc011ktv.1	+	1	249	c.249A>C	c.(247-249)GCA>GCC	p.A83A		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					AGCTGCTGGCACATTTTCTTG	0.522													115	253					0	0	0.003610	0	0
OR2A25	392138	broad.mit.edu	37	7	143771670	143771670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:143771670G>A	uc011ktx.1	+	1	358	c.358G>A	c.(358-360)GAT>AAT	p.D120N		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GATGTCCTATGATCGGTACGT	0.483													130	23					0	0	0.003610	0	0
OR2A25	392138	broad.mit.edu	37	7	143771784	143771784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:143771784C>T	uc011ktx.1	+	1	472	c.472C>T	c.(472-474)CAT>TAT	p.H158Y		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	158	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GGCCCTTGTCCATCTAGTGTT	0.453													35	209					0	0	0.003271	0	0
OR2A14	135941	broad.mit.edu	37	7	143827081	143827081	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:143827081G>A	uc011kua.1	+	1	876	c.876G>A	c.(874-876)AGG>AGA	p.R292R		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	292	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ATAGCCTAAGGAATGCAGAGG	0.557													226	27					0	0	0.003610	0	0
NOBOX	135935	broad.mit.edu	37	7	144098156	144098156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:144098156C>T	uc011kue.1	-	4	827	c.827G>A	c.(826-828)CGA>CAA	p.R276Q		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	276	Homeobox.				cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GTATAGGGTTCGTGTCTTTTT	0.542													43	5					0	0	0.003610	0	0
ZNF786	136051	broad.mit.edu	37	7	148767554	148767554	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:148767554G>A	uc003wfh.2	-	4	2447	c.2310C>T	c.(2308-2310)CTC>CTT	p.L770L	ZNF786_uc011kuk.1_Silent_p.L733L|ZNF786_uc003wfi.2_Silent_p.L684L	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	770					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACAGTTGGCTGAGCCTTTTCT	0.483													450	36					0	0	0.003610	0	0
ZNF786	136051	broad.mit.edu	37	7	148768946	148768946	+	Silent	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:148768946G>T	uc003wfh.2	-	4	1055	c.918C>A	c.(916-918)CTC>CTA	p.L306L	ZNF786_uc011kuk.1_Silent_p.L269L|ZNF786_uc003wfi.2_Silent_p.L220L	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TGTCCACTGGGAGGGAGCGCT	0.701													8	29					0.000673444	0.000969262	0.000673	1	0
ZNF786	136051	broad.mit.edu	37	7	148769427	148769427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:148769427G>A	uc003wfh.2	-	4	574	c.437C>T	c.(436-438)GCC>GTC	p.A146V	ZNF786_uc011kuk.1_Missense_Mutation_p.A109V|ZNF786_uc003wfi.2_Missense_Mutation_p.A60V	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			AGGAGCCCTGGCGTCGTGTCT	0.542													34	6					0	0	0.004289	0	0
ZNF425	155054	broad.mit.edu	37	7	148815384	148815384	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:148815384G>A	uc003wfj.2	-	2	148	c.75C>T	c.(73-75)ATC>ATT	p.I25I		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	25	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			ACTTCTCCAGGATCTCCCACT	0.393													76	158					0	0	0.003610	0	0
KRBA1	84626	broad.mit.edu	37	7	149425632	149425632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:149425632C>T	uc003wfz.2	+	12	1892	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.S166F	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	498										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAGGAAGCTCCCCACTGCAG	0.577													30	246					0	0	0.005524	0	0
SSPO	23145	broad.mit.edu	37	7	149510822	149510823	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:149510822_149510823CC>TT	uc010lpk.2	+	72	10107_10108	c.10107_10108CC>TT	c.(10105-10110)GACCTG>GATTTG	p.3369_3370DL>DL		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3369_3370					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTGCCTGGACCTGCTGACCGG	0.698													37	4					0	0	0.004672	0	0
ATP6V0E2	155066	broad.mit.edu	37	7	149576726	149576726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:149576726C>T	uc003wgr.2	+	4	1622	c.671C>T	c.(670-672)CCT>CTT	p.P224L	ATP6V0E2_uc003wgs.2_Missense_Mutation_p.P201L|ATP6V0E2_uc003wgp.2_3'UTR|ATP6V0E2_uc003wgq.2_RNA|uc003wgt.1_5'Flank	NM_145230	NP_660265	Q8NHE4	VA0E2_HUMAN	ATPase, H+ transporting, V0 subunit isoform 1	Error:Variant_position_missing_in_Q8NHE4_after_alignment					ATP hydrolysis coupled proton transport|cell growth|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport|vacuolar acidification	endosome membrane|integral to membrane|proton-transporting V-type ATPase, V0 domain|vacuole	ATPase activity, coupled to transmembrane movement of ions|hydrogen ion transmembrane transporter activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.00256)			GGGTCTTTCCCTTTACAGACG	0.632													19	2					0	0	0.001216	0	0
RARRES2	5919	broad.mit.edu	37	7	150037212	150037213	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150037212_150037213CG>AT	uc003wha.2	-	3	372_373	c.255_256CG>AT	c.(253-258)CCCGAG>CCATAG	p.E86*	RARRES2_uc010lpp.1_Nonsense_Mutation_p.E86*	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	86					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			ACTTTGCACTCGGGTTTCTTCC	0.584													13	797					0	0	0.004672	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269461	150269461	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150269461G>A	uc003whl.2	+	3	385	c.303G>A	c.(301-303)AAG>AAA	p.K101K	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Silent_p.K115K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	101							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAACGTCCAAGGAGATTATTC	0.522													25	64					0	0	0.003330	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269975	150269975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150269975G>A	uc003whl.2	+	3	899	c.817G>A	c.(817-819)GAA>AAA	p.E273K	GIMAP4_uc011kuu.1_Missense_Mutation_p.E134K|GIMAP4_uc011kuv.1_Missense_Mutation_p.E287K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	273	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGTGGAGCAGGAAAAGAGAAA	0.463													8	19					0	0	0.004482	0	0
TMEM176B	28959	broad.mit.edu	37	7	150491139	150491139	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150491139C>T	uc003wht.3	-	3	391	c.225G>A	c.(223-225)GGG>GGA	p.G75G	TMEM176B_uc003whu.3_Silent_p.G75G|TMEM176B_uc003whv.3_Intron|TMEM176B_uc003whw.3_Silent_p.G75G	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	75	Helical; (Potential).				cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AACTCACAACCCCCAGCAATA	0.607													28	75					0	0	0.007291	0	0
KCNH2	3757	broad.mit.edu	37	7	150649601	150649601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150649601G>A	uc003wic.2	-	6	1482	c.1469C>T	c.(1468-1470)GCC>GTC	p.A490V	KCNH2_uc003wib.2_Missense_Mutation_p.A150V|KCNH2_uc011kux.1_Missense_Mutation_p.A394V|KCNH2_uc003wid.2_Missense_Mutation_p.A150V|KCNH2_uc003wie.2_Missense_Mutation_p.A490V	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	490	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GTAGTGGACGGCGATGCGGCC	0.592													36	78					0	0	0.007835	0	0
AGAP3	116988	broad.mit.edu	37	7	150835375	150835376	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150835375_150835376CC>TT	uc003wjg.1	+	12	1644_1645	c.1641_1642CC>TT	c.(1639-1644)TCCCTG>TCTTTG	p.547_548SL>SL	AGAP3_uc003wje.1_Intron|AGAP3_uc003wjj.1_Intron|AGAP3_uc003wjk.1_5'Flank	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	511_512	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						CCACCACTTCCCTGCCCCCAGG	0.678													34	4					0	0	0.004672	0	0
AGAP3	116988	broad.mit.edu	37	7	150841005	150841005	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:150841005T>C	uc003wjg.1	+	18	2714	c.2711T>C	c.(2710-2712)CTG>CCG	p.L904P	AGAP3_uc003wje.1_Missense_Mutation_p.L573P|AGAP3_uc003wjj.1_Missense_Mutation_p.L403P|AGAP3_uc003wjk.1_Missense_Mutation_p.L322P	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	868					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						TCTGCTGAGCTGCACCGTAGT	0.622													15	92					0	0	0.003163	0	0
NUB1	51667	broad.mit.edu	37	7	151073881	151073881	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:151073881C>T	uc003wjx.2	+	14	1730	c.1725C>T	c.(1723-1725)TCC>TCT	p.S575S	NUB1_uc003wjw.2_Silent_p.S537S|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	551	NEDD8-binding 2.				positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		CAGCCACGTCCCCTTCTGACT	0.612													10	1					0	0	0.000673	0	0
ACTR3B	57180	broad.mit.edu	37	7	152550596	152550596	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:152550596C>T	uc003wle.1	+	11	1212	c.1095C>T	c.(1093-1095)GTC>GTT	p.V365V	ACTR3B_uc003wlf.1_Intron|ACTR3B_uc003wlg.1_Silent_p.V277V|ACTR3B_uc011kvp.1_Silent_p.V277V	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	365					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		CTGTGGAGGTCCAGGTGGTCA	0.587													12	36					0	0	0.002450	0	0
DPP6	1804	broad.mit.edu	37	7	154684121	154684121	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:154684121C>T	uc003wlk.2	+	26	2658	c.2529C>T	c.(2527-2529)TTC>TTT	p.F843F	DPP6_uc003wli.2_Silent_p.F779F|DPP6_uc003wlm.2_Silent_p.F781F|DPP6_uc011kvq.1_Silent_p.F736F	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	843	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TCAACTTCTTCGTGGAATGCT	0.512													49	110					0	0	0.003610	0	0
HTR5A	3361	broad.mit.edu	37	7	154862937	154862937	+	Missense_Mutation	SNP	G	A	A	rs141719500		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:154862937G>A	uc003wlu.1	+	1	392	c.328G>A	c.(328-330)GGT>AGT	p.G110S	uc011kvt.1_Missense_Mutation_p.P26L|uc003wlt.2_Missense_Mutation_p.P26L	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	110	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CTGGCAGCTAGGTCGGAGGCT	0.662													16	42					0	0	0.004007	0	0
PTPRN2	5799	broad.mit.edu	37	7	157475461	157475461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:157475461C>T	uc003wno.2	-	13	2078	c.1957G>A	c.(1957-1959)GGA>AGA	p.G653R	PTPRN2_uc003wnp.2_Missense_Mutation_p.G636R|PTPRN2_uc003wnq.2_Missense_Mutation_p.G624R|PTPRN2_uc003wnr.2_Missense_Mutation_p.G615R|PTPRN2_uc011kwa.1_Missense_Mutation_p.G676R	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	653	Cytoplasmic (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CCCCCTAGTCCCGAGAGCTTC	0.572													26	195					0	0	0.007291	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959902	157959902	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:157959902G>A	uc003wno.2	-	6	752	c.631C>T	c.(631-633)CAG>TAG	p.Q211*	PTPRN2_uc003wnp.2_Nonsense_Mutation_p.Q194*|PTPRN2_uc003wnq.2_Nonsense_Mutation_p.Q211*|PTPRN2_uc003wnr.2_Nonsense_Mutation_p.Q173*|PTPRN2_uc011kwa.1_Nonsense_Mutation_p.Q234*	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	211	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCGCGGAGCTGGGTCCGGGAC	0.637													28	58					0	0	0.001512	0	0
NCAPG2	54892	broad.mit.edu	37	7	158456965	158456965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:158456965G>A	uc003wnv.1	-	15	1871	c.1726C>T	c.(1726-1728)CAT>TAT	p.H576Y	NCAPG2_uc010lqu.1_Missense_Mutation_p.H368Y|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.H576Y|NCAPG2_uc011kwe.1_Missense_Mutation_p.H576Y|NCAPG2_uc011kwc.1_Missense_Mutation_p.H77Y|NCAPG2_uc011kwd.1_Missense_Mutation_p.H77Y	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	576					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		TTTAAGCAATGACGAATAACG	0.403													115	12					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2820090	2820090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:2820090C>T	uc011kwk.1	-	61	9919	c.9529G>A	c.(9529-9531)GAA>AAA	p.E3177K	CSMD1_uc011kwj.1_Missense_Mutation_p.E2506K|CSMD1_uc010lrg.2_Missense_Mutation_p.E1068K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3177	Extracellular (Potential).|Sushi 26.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAGAAGACTTCGGACTTATAG	0.522													14	3					0	0	0.004007	0	0
CSMD1	64478	broad.mit.edu	37	8	3009022	3009022	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:3009022C>T	uc011kwk.1	-	40	6321	c.5931G>A	c.(5929-5931)GGG>GGA	p.G1977G	CSMD1_uc011kwj.1_Silent_p.G1369G|CSMD1_uc003wqe.2_Silent_p.G1133G|CSMD1_uc010lrg.2_Silent_p.G45G	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1977	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCTCAGCGTCCCTCCACAGG	0.537													6	1					0	0	0.003080	0	0
MCPH1	79648	broad.mit.edu	37	8	6338320	6338321	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:6338320_6338321CT>TA	uc003wqi.2	+	11	2127_2128	c.2059_2060CT>TA	c.(2059-2061)CTT>TAT	p.L687Y		NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	687	BRCT 2.					microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		GACTCACGTGCTTTCCGGGAAG	0.52													16	12					0	0	0.004672	0	0
RP1L1	94137	broad.mit.edu	37	8	10467498	10467498	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:10467498C>T	uc003wtc.2	-	4	4339	c.4110G>A	c.(4108-4110)GAG>GAA	p.E1370E		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1370					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACTGCACCCCCTCTTCTTGCA	0.294													75	28					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10468596	10468596	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:10468596C>T	uc003wtc.2	-	4	3241	c.3012G>A	c.(3010-3012)GGG>GGA	p.G1004G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1004					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAGCTGGCTCCCCCAGGCCTT	0.662													12	9					0	0	0.000978	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17053128	17053128	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:17053128C>G	uc003wxe.2	+	4	765	c.368C>G	c.(367-369)TCT>TGT	p.S123C		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	123						integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		AGGACCATGTCTGGAGGTAAA	0.418													10	32					0	0	0.000673	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17063187	17063187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:17063187C>T	uc003wxe.2	+	7	897	c.500C>T	c.(499-501)TCA>TTA	p.S167L		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	167	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		GTTGGATTTTCAAATTATAAG	0.333													58	84					0	0	0.003610	0	0
MTMR7	9108	broad.mit.edu	37	8	17218671	17218671	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:17218671G>A	uc003wxm.2	-	4	662	c.423C>T	c.(421-423)CTC>CTT	p.L141L		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	141	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		AATGATTAGGGAGGCCCATCC	0.473													15	21					0	0	0.004990	0	0
PSD3	23362	broad.mit.edu	37	8	18413763	18413764	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:18413763_18413764CC>TT	uc003wza.2	-	15	2986_2987	c.2883_2884GG>AA	c.(2881-2886)AAGGAC>AAAAAC	p.D962N	PSD3_uc003wyx.3_Missense_Mutation_p.D291N|PSD3_uc003wyy.2_Missense_Mutation_p.D428N|PSD3_uc003wyz.2_Missense_Mutation_p.D263N	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	963					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		TCATCGACGTCCTTGGCTTTGA	0.47													45	33					0	0	0.004672	0	0
LPL	4023	broad.mit.edu	37	8	19811737	19811737	+	Silent	SNP	C	T	T	rs140457997		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:19811737C>T	uc003wzk.3	+	5	1018	c.648C>T	c.(646-648)TCC>TCT	p.S216S		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	216					fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	CCAGAGGGTCCCCTGGTCGAA	0.478													29	13					0	0	0.001512	0	0
SLC18A1	6570	broad.mit.edu	37	8	20022405	20022405	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:20022405G>A	uc011kyq.1	-	11	1461	c.990C>T	c.(988-990)ACC>ACT	p.T330T	SLC18A1_uc003wzl.2_Silent_p.T117T|SLC18A1_uc003wzm.2_Silent_p.T330T|SLC18A1_uc011kyr.1_Silent_p.T330T|SLC18A1_uc003wzn.2_Intron|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Intron	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	330	Lumenal, vesicle (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		GGGAGCACATGGTCTGCATCA	0.612													10	9					0	0	0.000978	0	0
ADAM28	10863	broad.mit.edu	37	8	24199169	24199169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:24199169G>A	uc003xdy.2	+	16	1812	c.1729G>A	c.(1729-1731)GGA>AGA	p.G577R	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G264R	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	577	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GCCCTGGAAAGGACGGATAGT	0.428													41	24					0	0	0.001951	0	0
ADAM7	8756	broad.mit.edu	37	8	24304708	24304708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:24304708G>A	uc003xeb.2	+	3	279	c.166G>A	c.(166-168)GAA>AAA	p.E56K	ADAM7_uc003xea.1_Missense_Mutation_p.E56K	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	56	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GAAAACGTATGAAGAAGAATT	0.363													23	23					0	0	0.003954	0	0
NEFM	4741	broad.mit.edu	37	8	24775312	24775312	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:24775312G>A	uc003xed.3	+	3	1977	c.1944G>A	c.(1942-1944)GTG>GTA	p.V648V	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.V272V	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	648	3.|6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AGTCACCAGTGGAAGAGAAAG	0.507													34	53					0	0	0.003271	0	0
NEFM	4741	broad.mit.edu	37	8	24775443	24775443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:24775443C>T	uc003xed.3	+	3	2108	c.2075C>T	c.(2074-2076)TCA>TTA	p.S692L	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Missense_Mutation_p.S316L	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	692	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		gaggcaaagtcaaaagcagaa	0.204													13	20					0	0	0.001368	0	0
DOCK5	80005	broad.mit.edu	37	8	25190120	25190120	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:25190120T>G	uc003xeg.2	+	20	2140	c.2003T>G	c.(2002-2004)TTT>TGT	p.F668C	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.F382C|DOCK5_uc003xei.2_Missense_Mutation_p.F238C|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	668	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		TATCTTCAGTTTTTGCAAGAT	0.368													5	9					0	0	0.000602	0	0
EBF2	64641	broad.mit.edu	37	8	25718576	25718576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:25718576C>T	uc003xes.1	-	13	1348	c.1331G>A	c.(1330-1332)GGA>GAA	p.G444E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	444					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TTGATTATTTCCTTGTGTTGA	0.473													66	78					0	0	0.003610	0	0
CLU	1191	broad.mit.edu	37	8	27461907	27461907	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:27461907C>G	uc003xfw.1	-	5	893	c.835G>C	c.(835-837)GAC>CAC	p.D279H	CLU_uc010lux.1_Missense_Mutation_p.D144H|CLU_uc003xfx.1_Missense_Mutation_p.D279H|CLU_uc003xfy.1_Missense_Mutation_p.D290H|CLU_uc003xfz.1_Missense_Mutation_p.D331H	NM_203339	NP_976084	P10909	CLUS_HUMAN	clusterin isoform 2	279					chaperone-mediated protein folding|complement activation, classical pathway|innate immune response|lipid metabolic process|negative regulation of apoptosis|negative regulation of protein homooligomerization|platelet activation|platelet degranulation|positive regulation of NF-kappaB transcription factor activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|response to misfolded protein|response to virus|reverse cholesterol transport	chromaffin granule|cytosol|endoplasmic reticulum|microsome|mitochondrial membrane|nucleus|perinuclear region of cytoplasm|platelet alpha granule lumen|spherical high-density lipoprotein particle	misfolded protein binding|ubiquitin protein ligase binding			ovary(2)	2		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|Colorectal(74;0.132)		CGGTCATCGTCGCCTTCTGGG	0.507													27	18					0	0	0.006320	0	0
KIF13B	23303	broad.mit.edu	37	8	29025003	29025003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:29025003G>A	uc003xhh.3	-	11	1104	c.1045C>T	c.(1045-1047)CGA>TGA	p.R349*	KIF13B_uc003xhj.2_Nonsense_Mutation_p.R246*|KIF13B_uc010lvf.1_Nonsense_Mutation_p.R285*	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	349					microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		TGCTTGGCTCGATCTGCATAC	0.537													27	76					0	0	0.003954	0	0
TEX15	56154	broad.mit.edu	37	8	30694351	30694351	+	Missense_Mutation	SNP	C	T	T	rs112222282	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:30694351C>T	uc003xil.2	-	3	8300	c.8300G>A	c.(8299-8301)CGA>CAA	p.R2767Q		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2767										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AGGCACAAATCGATTAGGAAG	0.378													14	33					0	0	0.004007	0	0
PURG	29942	broad.mit.edu	37	8	30854142	30854142	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:30854142C>T	uc003xim.1	-	2	1869	c.936G>A	c.(934-936)CAG>CAA	p.Q312Q		NM_001015508	NP_001015508	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform B	Error:Variant_position_missing_in_Q9UJV8_after_alignment						nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		TATCATGGGGCTGTTCCTTAT	0.328													21	60					0	0	0.006320	0	0
C8orf41	80185	broad.mit.edu	37	8	33367348	33367348	+	Silent	SNP	G	A	A	rs138257989	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:33367348G>A	uc003xjl.3	-	2	1275	c.750C>T	c.(748-750)CCC>CCT	p.P250P	C8orf41_uc003xjk.3_Silent_p.P250P|C8orf41_uc010lvv.2_Silent_p.P250P|C8orf41_uc003xjm.3_Silent_p.P250P|C8orf41_uc003xjn.1_Silent_p.P250P	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	250							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		CCAATGATGCGGGAAGTACCC	0.478													20	8					0	0	0.001523	0	0
UNC5D	137970	broad.mit.edu	37	8	35631824	35631824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:35631824G>A	uc003xjr.1	+	16	2814	c.2486G>A	c.(2485-2487)CGA>CAA	p.R829Q	UNC5D_uc003xjs.1_Missense_Mutation_p.R824Q|UNC5D_uc003xju.1_Missense_Mutation_p.R405Q	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	829	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TAGAGTGAACGAGAAACCATC	0.423													15	9					0	0	0.004990	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729977	37729977	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:37729977G>A	uc003xkm.1	-	4	2387	c.2343C>T	c.(2341-2343)GTC>GTT	p.V781V	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Silent_p.V110V|RAB11FIP1_uc003xko.1_Silent_p.V110V|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	781					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CAATGGAAGGGACTGATGCTC	0.542													32	16					0	0	0.004289	0	0
ASH2L	9070	broad.mit.edu	37	8	37967969	37967969	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:37967969C>T	uc003xkt.3	+	4	532	c.474C>T	c.(472-474)TTC>TTT	p.F158F	ASH2L_uc011lbk.1_Silent_p.F19F|ASH2L_uc003xku.3_Silent_p.F64F|ASH2L_uc010lwa.2_Silent_p.F64F	NM_004674	NP_004665	Q9UBL3	ASH2L_HUMAN	ash2-like isoform a	158					hemopoiesis|histone H3-K4 methylation|positive regulation of cell proliferation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription from RNA polymerase II promoter	Set1C/COMPASS complex	metal ion binding|protein binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)				ATACCTATTTCCTCCGGAAGC	0.428													31	7					0	0	0.002836	0	0
HGSNAT	138050	broad.mit.edu	37	8	43054585	43054585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:43054585C>T	uc003xpx.3	+	18	1829	c.1781C>T	c.(1780-1782)CCC>CTC	p.P594L		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	622	Lumenal, vesicle (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			AACTACTTCCCCTTTCAGTGG	0.483													6	5					0	0	0.001168	0	0
SNTG1	54212	broad.mit.edu	37	8	51306823	51306823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:51306823G>A	uc010lxy.1	+	4	396	c.25G>A	c.(25-27)GAG>AAG	p.E9K	SNTG1_uc003xqs.1_Missense_Mutation_p.E9K|SNTG1_uc010lxz.1_Missense_Mutation_p.E9K|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	9					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				CGCCTGTGAGGAGGTGAGTAC	0.443													17	27					0	0	0.007413	0	0
PXDNL	137902	broad.mit.edu	37	8	52321203	52321203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:52321203C>T	uc003xqu.3	-	17	3082	c.2981G>A	c.(2980-2982)GGA>GAA	p.G994E	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	994					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AACCGTGTTTCCCTCCCAGTG	0.637													6	10					0	0	0.001168	0	0
PXDNL	137902	broad.mit.edu	37	8	52321654	52321655	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:52321654_52321655GG>AA	uc003xqu.3	-	17	2630_2631	c.2529_2530CC>TT	c.(2527-2532)TTCCCC>TTTTCC	p.P844S	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	844					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GTGTTCATGGGGAAACAAGGAG	0.698													13	15					0	0	0.004672	0	0
PXDNL	137902	broad.mit.edu	37	8	52370068	52370068	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:52370068G>A	uc003xqu.3	-	9	1073	c.972C>T	c.(970-972)TCC>TCT	p.S324S		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	324					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CTGGAAGACTGGAGTATCTGA	0.413													24	33					0	0	0.002780	0	0
PXDNL	137902	broad.mit.edu	37	8	52370162	52370162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:52370162C>T	uc003xqu.3	-	9	979	c.878G>A	c.(877-879)CGA>CAA	p.R293Q		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	293	Ig-like C2-type 1.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TCTGGTGTTTCGGATCATGAG	0.428													69	60					0	0	0.003610	0	0
ST18	9705	broad.mit.edu	37	8	53079532	53079532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:53079532C>T	uc003xqz.2	-	6	1240	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K	ST18_uc011ldq.1_Missense_Mutation_p.E9K|ST18_uc011ldr.1_Missense_Mutation_p.E327K|ST18_uc011lds.1_Missense_Mutation_p.E267K|ST18_uc003xra.2_Missense_Mutation_p.E362K|ST18_uc003xrb.2_Missense_Mutation_p.E362K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	362						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TCCCTCTTTTCAGGCCTTGGT	0.512													44	93					0	0	0.003610	0	0
RP1	6101	broad.mit.edu	37	8	55534779	55534779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55534779C>T	uc003xsd.1	+	3	866	c.718C>T	c.(718-720)CCT>TCT	p.P240S	RP1_uc011ldy.1_Missense_Mutation_p.P240S	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	240					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATACTTGCTTCCTGCTAGATT	0.463													22	19					0	0	0.002780	0	0
RP1	6101	broad.mit.edu	37	8	55537382	55537382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55537382C>T	uc003xsd.1	+	4	1088	c.940C>T	c.(940-942)CCT>TCT	p.P314S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	314					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACCAATATATCCTTCTGAAGA	0.308													13	37					0	0	0.001855	0	0
RP1	6101	broad.mit.edu	37	8	55538384	55538384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55538384G>A	uc003xsd.1	+	4	2090	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	648					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACTAATTAATGAATTTGCTCA	0.348													11	20					0	0	0.000673	0	0
RP1	6101	broad.mit.edu	37	8	55538600	55538600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55538600C>T	uc003xsd.1	+	4	2306	c.2158C>T	c.(2158-2160)CCC>TCC	p.P720S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	720					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTCAGATAGTCCCCTTAAAGG	0.348													11	10					0	0	0.000673	0	0
RP1	6101	broad.mit.edu	37	8	55538772	55538772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55538772G>A	uc003xsd.1	+	4	2478	c.2330G>A	c.(2329-2331)AGA>AAA	p.R777K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	777					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTAACCAAAAGAAAATCTAGA	0.299													12	31					0	0	0.002450	0	0
RP1	6101	broad.mit.edu	37	8	55540222	55540222	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:55540222G>A	uc003xsd.1	+	4	3928	c.3780G>A	c.(3778-3780)GAG>GAA	p.E1260E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1260					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTCCATGTGAGATGTGCACTG	0.443													57	43					0	0	0.003610	0	0
XKR4	114786	broad.mit.edu	37	8	56435966	56435966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:56435966G>A	uc003xsf.2	+	3	1165	c.1133G>A	c.(1132-1134)TGG>TAG	p.W378*		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	378	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAGTTCTGCTGGCACTTCTTC	0.572													50	55					0	0	0.003610	0	0
PENK	5179	broad.mit.edu	37	8	57358378	57358378	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:57358378G>A	uc003xsz.2	-	1	216	c.135C>T	c.(133-135)TTC>TTT	p.F45F	uc003xtb.1_RNA|PENK_uc003xta.3_Silent_p.F45F|PENK_uc010lym.2_Silent_p.F45F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	45					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CACTCACCAGGAAGTTGATGT	0.682													22	41					0	0	0.006320	0	0
CLVS1	157807	broad.mit.edu	37	8	62371063	62371063	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:62371063G>A	uc003xuh.2	+	5	1263	c.939G>A	c.(937-939)TCG>TCA	p.S313S	CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Intron	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	313					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						ATACGTCCTCGAATCTGGAGA	0.493													18	16					0	0	0.001523	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527671	65527671	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:65527671G>A	uc003xvj.2	-	4	1173	c.969C>T	c.(967-969)GAC>GAT	p.D323D		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	323					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				GCAGCAAACGGTCAATTTCGT	0.468													19	29					0	0	0.001523	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527784	65527784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:65527784G>A	uc003xvj.2	-	4	1060	c.856C>T	c.(856-858)CAT>TAT	p.H286Y		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	286					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AAGCCTAAATGATGTGCTGGG	0.423													7	12					0	0	0.003080	0	0
RRS1	23212	broad.mit.edu	37	8	67342116	67342116	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:67342116G>T	uc003xwa.2	+	1	854	c.750G>T	c.(748-750)AAG>AAT	p.K250N	ADHFE1_uc003xwb.3_5'Flank|ADHFE1_uc003xwd.3_5'Flank|ADHFE1_uc003xwc.3_5'Flank|ADHFE1_uc003xwe.3_5'Flank|ADHFE1_uc003xwf.3_5'Flank|ADHFE1_uc011les.1_5'Flank|ADHFE1_uc011leq.1_5'Flank|ADHFE1_uc011ler.1_5'Flank	NM_015169	NP_055984	Q15050	RRS1_HUMAN	homolog of yeast ribosome biogenesis regulatory	250					mitotic metaphase plate congression|ribosome biogenesis	condensed nuclear chromosome|nucleolus					0		Lung NSC(129;0.197)	Epithelial(68;0.0391)|all cancers(69;0.0898)|BRCA - Breast invasive adenocarcinoma(89;0.111)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			GCTCCGGCAAGAAAAGGAAGT	0.597													11	34					9.31168e-06	1.34624e-05	0.001855	1	0
PREX2	80243	broad.mit.edu	37	8	68984784	68984784	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:68984784G>A	uc003xxv.1	+	14	1575	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L	PREX2_uc003xxu.1_Silent_p.L516L|PREX2_uc011lez.1_Silent_p.L451L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	516	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CCAACAAACTGATAGACTGGT	0.323													34	33					0	0	0.006999	0	0
EYA1	2138	broad.mit.edu	37	8	72127689	72127689	+	Silent	SNP	C	T	T	rs147434089		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:72127689C>T	uc003xys.3	-	15	1817	c.1530G>A	c.(1528-1530)GCG>GCA	p.A510A	EYA1_uc003xyr.3_Silent_p.A475A|EYA1_uc003xyt.3_Silent_p.A477A|EYA1_uc010lzf.2_Silent_p.A437A|EYA1_uc003xyu.2_Silent_p.A510A|EYA1_uc011lfe.1_Silent_p.A504A|EYA1_uc003xyv.2_Silent_p.A388A	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	510					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GCAGGACTTTCGCCAATGCTG	0.338													46	49					0	0	0.003610	0	0
EYA1	2138	broad.mit.edu	37	8	72234092	72234092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:72234092G>A	uc003xys.3	-	5	582	c.295C>T	c.(295-297)CCT>TCT	p.P99S	EYA1_uc003xyr.3_Missense_Mutation_p.P99S|EYA1_uc003xyt.3_Missense_Mutation_p.P66S|EYA1_uc010lzf.2_Missense_Mutation_p.P26S|EYA1_uc003xyu.2_Missense_Mutation_p.P99S|EYA1_uc011lfe.1_Missense_Mutation_p.P98S|EYA1_uc003xyv.2_Intron	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	99					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GAAGGGGTAGGGAGAATATGT	0.453													15	41					0	0	0.006122	0	0
TRPA1	8989	broad.mit.edu	37	8	72975757	72975757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:72975757G>A	uc003xza.2	-	5	777	c.602C>T	c.(601-603)CCT>CTT	p.P201L		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	201	ANK 5.|Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	TTGGTGAATAGGGAAACATCC	0.348													16	50					0	0	0.001216	0	0
KCNB2	9312	broad.mit.edu	37	8	73480030	73480030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:73480030C>T	uc003xzb.2	+	2	649	c.61C>T	c.(61-63)CCT>TCT	p.P21S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	21	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ACTTTCCCTTCCTCCAGAGCC	0.522													51	58					0	0	0.003610	0	0
KCNB2	9312	broad.mit.edu	37	8	73848969	73848969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:73848969G>A	uc003xzb.2	+	3	1967	c.1379G>A	c.(1378-1380)CGA>CAA	p.R460Q		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	460	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GCCTTCGCTCGAAGTATGGAA	0.512													59	55					0	0	0.003610	0	0
KCNB2	9312	broad.mit.edu	37	8	73849858	73849858	+	Silent	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:73849858C>A	uc003xzb.2	+	3	2856	c.2268C>A	c.(2266-2268)CTC>CTA	p.L756L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	756	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GTACCATCCTCTTAGAAGAAA	0.607													6	113					0.00307968	0.00441594	0.003080	1	0
HNF4G	3174	broad.mit.edu	37	8	76470901	76470903	+	Missense_Mutation	TNP	TCC	AAT	AAT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:76470901_76470903TCC>AAT	uc003yaq.2	+	8	1011_1013	c.741_743TCC>AAT	c.(739-744)GATCCA>GAAATA	p.247_248DP>EI	HNF4G_uc003yar.2_Missense_Mutation_p.284_285DP>EI	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	247_248					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TATTTTTTGATCCAGGTTGGTTT	0.305													51	60					0	0	0.004672	0	0
ZFHX4	79776	broad.mit.edu	37	8	77690488	77690488	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:77690488T>A	uc003yav.2	+	4	3447	c.3060T>A	c.(3058-3060)TAT>TAA	p.Y1020*	ZFHX4_uc003yau.1_Nonsense_Mutation_p.Y1046*|ZFHX4_uc003yaw.1_Nonsense_Mutation_p.Y1020*	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1020						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AATCCTGCTATTACTACTGTG	0.493										HNSCC(33;0.089)			52	42					0	0	0.003610	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766907	77766907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:77766907G>A	uc003yav.2	+	10	8002	c.7615G>A	c.(7615-7617)GAT>AAT	p.D2539N	ZFHX4_uc003yau.1_Missense_Mutation_p.D2584N|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2539N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2539						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAACTAGACGATAAAGAAGA	0.507										HNSCC(33;0.089)			14	14					0	0	0.003163	0	0
STMN2	11075	broad.mit.edu	37	8	80567214	80567214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:80567214G>A	uc003ybj.2	+	4	448	c.397G>A	c.(397-399)GAA>AAA	p.E133K	STMN2_uc010lzp.2_RNA|STMN2_uc011lfn.1_Intron	NM_007029	NP_008960	Q93045	STMN2_HUMAN	superiorcervical ganglia, neural specific 10	133	Potential.				intracellular signal transduction|negative regulation of microtubule depolymerization|negative regulation of microtubule polymerization|negative regulation of neuron projection development|neuron differentiation|positive regulation of microtubule depolymerization|positive regulation of neuron projection development	axon|growth cone|membrane|membrane fraction|perinuclear region of cytoplasm|soluble fraction	protein binding			ovary(1)|central_nervous_system(1)	2	all_lung(9;8.34e-05)		Epithelial(68;0.0229)|all cancers(69;0.0874)			GATGGCGGAGGAAAAGCTGAT	0.468													11	11					0	0	0.001368	0	0
ZNF704	619279	broad.mit.edu	37	8	81733661	81733661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:81733661G>A	uc003yby.1	-	2	401	c.169C>T	c.(169-171)CTT>TTT	p.L57F		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	57						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TTTTGCTCAAGGAGACAGATG	0.453													56	182					0	0	0.003610	0	0
CA1	759	broad.mit.edu	37	8	86253846	86253846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:86253846C>T	uc003ydh.2	-	3	219	c.19G>A	c.(19-21)GGA>AGA	p.G7R	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Missense_Mutation_p.G7R|CA1_uc003ydi.2_Missense_Mutation_p.G7R	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	7					one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	TCATCATATCCCCAGTCTGGA	0.328													16	51					0	0	0.007413	0	0
MMP16	4325	broad.mit.edu	37	8	89086840	89086840	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:89086840G>A	uc003yeb.3	-	7	1497	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F	MMP16_uc003yec.2_Silent_p.F405F	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	405	Hemopexin-like 2.|Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TACCTTTAAAGAACACAAAAT	0.393													18	24					0	0	0.001882	0	0
MMP16	4325	broad.mit.edu	37	8	89180047	89180047	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:89180047A>C	uc003yeb.3	-	4	842	c.560T>G	c.(559-561)ATT>AGT	p.I187S	MMP16_uc003yec.2_Missense_Mutation_p.I187S	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	187	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						AGATGCAAAAATAATGGTTAT	0.453													8	30					0	0	0.006214	0	0
MMP16	4325	broad.mit.edu	37	8	89198734	89198734	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:89198734C>T	uc003yeb.3	-	3	657	c.375G>A	c.(373-375)CAG>CAA	p.Q125Q	MMP16_uc003yec.2_Silent_p.Q125Q	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	125	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GCTGCCATTTCTGTCCTGTCA	0.423													64	123					0	0	0.003610	0	0
RAD54B	25788	broad.mit.edu	37	8	95390826	95390826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:95390826G>A	uc003ygk.2	-	13	2382	c.2284C>T	c.(2284-2286)CCT>TCT	p.P762S	RAD54B_uc010may.1_Missense_Mutation_p.P569S	NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			ATATGTACAGGATATTTCTGA	0.353								Direct_reversal_of_damage|Homologous_recombination					11	24					0	0	0.002450	0	0
DPY19L4	286148	broad.mit.edu	37	8	95777443	95777443	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:95777443C>T	uc003ygx.2	+	9	1027	c.903C>T	c.(901-903)TCC>TCT	p.S301S		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	301	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					ACATATTTTCCCTCTTTCTGG	0.294													209	181					0	0	0.003610	0	0
C8orf47	203111	broad.mit.edu	37	8	99101378	99101378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:99101378G>A	uc003yih.1	+	2	281	c.133G>A	c.(133-135)GGA>AGA	p.G45R		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	45											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			ACATGCACTGGGAAGAGAATC	0.418													24	25					0	0	0.003954	0	0
RGS22	26166	broad.mit.edu	37	8	101020656	101020656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:101020656G>A	uc003yjb.1	-	15	2503	c.2308C>T	c.(2308-2310)CTT>TTT	p.L770F	RGS22_uc003yja.1_Missense_Mutation_p.L589F|RGS22_uc003yjc.1_Missense_Mutation_p.L758F|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	770	Poly-Leu.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GGCTCAAGAAGGAGGAGAAGG	0.378													24	55					0	0	0.005443	0	0
RGS22	26166	broad.mit.edu	37	8	101076105	101076105	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:101076105C>T	uc003yjb.1	-	8	1086	c.891G>A	c.(889-891)AAG>AAA	p.K297K	RGS22_uc003yja.1_Silent_p.K116K|RGS22_uc003yjc.1_Silent_p.K285K|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	297					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CATCCTGTTTCTTTTCAAGGT	0.308													41	42					0	0	0.007835	0	0
GRHL2	79977	broad.mit.edu	37	8	102661702	102661702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:102661702C>T	uc010mbu.2	+	14	2003	c.1673C>T	c.(1672-1674)CCC>CTC	p.P558L		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	558						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TTGAAGTCTCCCACAGTGAAG	0.522													4	28					0	0	0.001168	0	0
UBR5	51366	broad.mit.edu	37	8	103306290	103306290	+	Silent	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:103306290T>A	uc003ykr.1	-	33	4275	c.4242A>T	c.(4240-4242)ACA>ACT	p.T1414T	UBR5_uc003yks.1_Silent_p.T1414T	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1414					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TACGTCCAGGTGTATATTTGT	0.338													26	38					0	0	0.004656	0	0
RIMS2	9699	broad.mit.edu	37	8	105026827	105026827	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:105026827G>A	uc003yls.2	+	17	2779	c.2538G>A	c.(2536-2538)AAG>AAA	p.K846K	RIMS2_uc003ylp.2_Silent_p.K1106K|RIMS2_uc003ylw.2_Silent_p.K920K|RIMS2_uc003ylq.2_Silent_p.K920K|RIMS2_uc003ylr.2_Silent_p.K945K	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1168					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTCCACCAAAGGGAACGTTGG	0.438										HNSCC(12;0.0054)			30	26					0	0	0.003755	0	0
TM7SF4	81501	broad.mit.edu	37	8	105361735	105361735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:105361735C>T	uc003ylx.1	+	2	1004	c.955C>T	c.(955-957)CGG>TGG	p.R319W		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	319					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCTGCTGTATCGGCTCATTTT	0.473													53	160					0	0	0.003610	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367392	105367392	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:105367392G>A	uc003ylx.1	+	3	1366	c.1317G>A	c.(1315-1317)CGG>CGA	p.R439R		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	439	Cytoplasmic.				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TCAAAAGACGGCTGAGTCTCT	0.478													28	24					0	0	0.001512	0	0
DPYS	1807	broad.mit.edu	37	8	105405096	105405096	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:105405096G>A	uc003yly.3	-	8	1488	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	DPYS_uc010mcf.1_Silent_p.F23F	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	453					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCGTGACACTGAACACTCCGG	0.468													76	67					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815015	106815015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:106815015G>A	uc003ymd.2	+	8	2728	c.2705G>A	c.(2704-2706)CGA>CAA	p.R902Q	ZFPM2_uc011lhs.1_Missense_Mutation_p.R633Q	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	902					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GAAAGCGAACGAAACAGCCCT	0.458													7	13					0	0	0.003080	0	0
TRHR	7201	broad.mit.edu	37	8	110100443	110100443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:110100443G>A	uc003ymz.3	+	1	718	c.702G>A	c.(700-702)TGG>TGA	p.W234*		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	234	Cytoplasmic (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			CTAAGACATGGAAAAATGATT	0.378													13	17					0	0	0.002450	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110412521	110412521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:110412521G>A	uc003yne.2	+	13	1333	c.1229G>A	c.(1228-1230)GGT>GAT	p.G410D		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	410	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TACATCAAGGGTGATGACCGT	0.388										HNSCC(38;0.096)			56	114					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457059	110457059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:110457059G>A	uc003yne.2	+	38	5065	c.4961G>A	c.(4960-4962)CGA>CAA	p.R1654Q		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1654	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTGATAGGCGATTTGTACTT	0.433										HNSCC(38;0.096)			53	148					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477410	110477410	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:110477410G>A	uc003yne.2	+	49	8453	c.8349G>A	c.(8347-8349)CCG>CCA	p.P2783P		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2783	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTCACACACCGAACAAGGCTG	0.408										HNSCC(38;0.096)			37	30					0	0	0.005524	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110498985	110498985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:110498985C>T	uc003yne.2	+	59	9919	c.9815C>T	c.(9814-9816)TCT>TTT	p.S3272F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3272	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCCGGTTGGTCTGAGGACTCT	0.423										HNSCC(38;0.096)			81	93					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113267556	113267556	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:113267556G>A	uc003ynu.2	-	62	10122	c.9963C>T	c.(9961-9963)TTC>TTT	p.F3321F	CSMD3_uc003yns.2_Silent_p.F2523F|CSMD3_uc003ynt.2_Silent_p.F3281F|CSMD3_uc011lhx.1_Silent_p.F3152F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3321	Extracellular (Potential).|Sushi 26.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCACTAATATGAAAGGAAAAT	0.408										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	29					0	0	0.001882	0	0
CSMD3	114788	broad.mit.edu	37	8	113293562	113293562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:113293562G>A	uc003ynu.2	-	59	9508	c.9349C>T	c.(9349-9351)CCA>TCA	p.P3117S	CSMD3_uc003yns.2_Missense_Mutation_p.P2319S|CSMD3_uc003ynt.2_Missense_Mutation_p.P3077S|CSMD3_uc011lhx.1_Missense_Mutation_p.P2948S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3117	Extracellular (Potential).|Sushi 23.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTGGTTCCTGGGTTACCACAC	0.373										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			21	22					0	0	0.002780	0	0
CSMD3	114788	broad.mit.edu	37	8	113318320	113318320	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:113318320G>A	uc003ynu.2	-	51	8146	c.7987C>T	c.(7987-7989)CGA>TGA	p.R2663*	CSMD3_uc003yns.2_Nonsense_Mutation_p.R1865*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.R2623*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.R2559*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2663	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GATGACAATCGATATCCATCA	0.418										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			38	35					0	0	0.007835	0	0
CSMD3	114788	broad.mit.edu	37	8	113529299	113529299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:113529299G>A	uc003ynu.2	-	28	4879	c.4720C>T	c.(4720-4722)CGG>TGG	p.R1574W	CSMD3_uc003yns.2_Missense_Mutation_p.R846W|CSMD3_uc003ynt.2_Missense_Mutation_p.R1534W|CSMD3_uc011lhx.1_Missense_Mutation_p.R1470W	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1574	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAGAAGTACCGATTTTCTACC	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			28	39					0	0	0.002445	0	0
C8orf85	441376	broad.mit.edu	37	8	117950577	117950577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:117950577C>T	uc003yof.2	+	1	114	c.95C>T	c.(94-96)CCC>CTC	p.P32L		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	32											0						CCACCTCGTCCCGCGTGCGAC	0.692													11	14					0	0	0.001368	0	0
SAMD12	401474	broad.mit.edu	37	8	119209968	119209968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:119209968G>A	uc010mda.1	-	5	596	c.467C>T	c.(466-468)TCA>TTA	p.S156L	SAMD12_uc010mdb.1_RNA	NM_001101676	NP_001095146	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	156										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			ACCCTCAGATGATGCTGCAAG	0.428													70	63					0	0	0.003610	0	0
FAM83A	84985	broad.mit.edu	37	8	124204148	124204148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:124204148G>A	uc003ypv.2	+	3	2600	c.586G>A	c.(586-588)GGA>AGA	p.G196R	FAM83A_uc003ypw.2_Missense_Mutation_p.G196R|FAM83A_uc003ypy.2_Intron|FAM83A_uc003ypx.2_Missense_Mutation_p.G196R|FAM83A_uc003ypz.2_Missense_Mutation_p.G196R	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	196										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CCTGGACCAGGGAGGTGTGAA	0.517													78	83					0	0	0.003610	0	0
FAM83A	84985	broad.mit.edu	37	8	124206276	124206276	+	Missense_Mutation	SNP	C	T	T	rs149619029		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:124206276C>T	uc003ypv.2	+	4	2675	c.661C>T	c.(661-663)CGG>TGG	p.R221W	FAM83A_uc003ypw.2_Missense_Mutation_p.R221W|FAM83A_uc003ypy.2_Missense_Mutation_p.R165W|FAM83A_uc003ypx.2_Missense_Mutation_p.R221W|FAM83A_uc003ypz.2_Missense_Mutation_p.R221W	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	221										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CATTTCCATCCGGAGTGTGGA	0.393													16	26					0	0	0.004990	0	0
ATAD2	29028	broad.mit.edu	37	8	124340747	124340747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:124340747G>A	uc003yqh.3	-	25	3659	c.3551C>T	c.(3550-3552)TCA>TTA	p.S1184L	ATAD2_uc011lii.1_Missense_Mutation_p.S975L|ATAD2_uc003yqi.3_RNA	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	1184					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CTTTGCCTGTGAAATCTTCCT	0.373													32	59					0	0	0.002445	0	0
RNF139	11236	broad.mit.edu	37	8	125498514	125498514	+	Silent	SNP	T	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:125498514T>G	uc003yrc.2	+	2	967	c.624T>G	c.(622-624)GTT>GTG	p.V208V		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	208					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CACGATATGTTTATCTTTTGG	0.378									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				70	64					0	0	0.003610	0	0
MYC	4609	broad.mit.edu	37	8	128751083	128751083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:128751083C>T	uc003ysi.2	+	2	1145	c.620C>T	c.(619-621)TCG>TTG	p.S207L		NM_002467	NP_002458	P01106	MYC_HUMAN	myc proto-oncogene protein	192					branching involved in ureteric bud morphogenesis|cell cycle arrest|cell proliferation|cellular iron ion homeostasis|positive regulation of metanephric cap mesenchymal cell proliferation|positive regulation of transcription, DNA-dependent|regulation of telomere maintenance|regulation of transcription from RNA polymerase II promoter|response to drug	nucleolus|nucleoplasm	E-box binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(3)|ovary(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(1;6.19e-134)|all_epithelial(1;1.75e-119)|all_lung(1;5.66e-51)|Breast(1;1.08e-22)|all_neural(1;4.45e-21)|Medulloblastoma(1;1.88e-20)|Colorectal(1;1.92e-09)|Lung SC(1;4.52e-07)|Ovarian(5;0.000122)|Esophageal squamous(12;0.000995)|Renal(1;0.0921)|Hepatocellular(40;0.108)|Myeloproliferative disorder(2;0.135)|Melanoma(291;0.185)	Myeloproliferative disorder(644;0.0255)|Ovarian(118;0.0654)|Breast(495;0.212)|Acute lymphoblastic leukemia(644;0.22)	Epithelial(1;1.63e-94)|all cancers(1;5.82e-87)|OV - Ovarian serous cystadenocarcinoma(1;2.12e-71)|BRCA - Breast invasive adenocarcinoma(1;4.3e-14)|Lung(2;0.000381)|Colorectal(2;0.0102)|LUAD - Lung adenocarcinoma(14;0.0172)|READ - Rectum adenocarcinoma(2;0.0723)|LUSC - Lung squamous cell carcinoma(258;0.151)	KIRC - Kidney renal clear cell carcinoma(542;0.248)		ATCGACCCCTCGGTGGTCTTC	0.667		3	A|T	IGK@|BCL5|BCL7A |BTG1|TRA@|IGH@	Burkitt lymphoma| amplified in other cancers|B-CLL						OREG0018982	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	30					0	0	0.007291	0	0
ADCY8	114	broad.mit.edu	37	8	131826339	131826339	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:131826339G>T	uc003ytd.3	-	14	3145	c.2889C>A	c.(2887-2889)TTC>TTA	p.F963L	ADCY8_uc010mds.2_Missense_Mutation_p.F832L	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	963	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCTTCTCTAGGAAATGGCGGG	0.522										HNSCC(32;0.087)			23	55					3.01185e-09	4.36752e-09	0.003954	1	0
ADCY8	114	broad.mit.edu	37	8	131861930	131861930	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:131861930C>T	uc003ytd.3	-	10	2586	c.2330G>A	c.(2329-2331)TGG>TAG	p.W777*	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	777					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CTCATTAATCCAACAGCAAGT	0.448										HNSCC(32;0.087)			19	14					0	0	0.001216	0	0
ADCY8	114	broad.mit.edu	37	8	131964149	131964149	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:131964149G>A	uc003ytd.3	-	3	1462	c.1206C>T	c.(1204-1206)TTC>TTT	p.F402F	ADCY8_uc010mds.2_Silent_p.F402F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	402	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGATCCGATGGAACTGGTGCT	0.527										HNSCC(32;0.087)			17	35					0	0	0.004007	0	0
ADCY8	114	broad.mit.edu	37	8	132051766	132051766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:132051766C>T	uc003ytd.3	-	1	1070	c.814G>A	c.(814-816)GGC>AGC	p.G272S	ADCY8_uc010mds.2_Missense_Mutation_p.G272S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	272					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGCACGTAGCCTATGCCGTCG	0.667										HNSCC(32;0.087)			7	23					0	0	0.001984	0	0
SLA	6503	broad.mit.edu	37	8	134060148	134060148	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:134060148C>T	uc003ytz.2	-	6	1111	c.279G>A	c.(277-279)AAG>AAA	p.K93K	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Silent_p.K110K|SLA_uc011ljf.1_5'UTR|SLA_uc011ljg.1_Silent_p.K110K|SLA_uc010mdy.1_Silent_p.K93K|SLA_uc011ljd.1_Silent_p.K133K	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	93	SH2.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			GCTCCTCGGCCTTGTCTCTGC	0.557													17	37					0	0	0.007413	0	0
ZFAT	57623	broad.mit.edu	37	8	135614441	135614441	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:135614441G>A	uc003yup.2	-	6	1696	c.1521C>T	c.(1519-1521)ATC>ATT	p.I507I	ZFAT_uc003yun.2_Silent_p.I495I|ZFAT_uc003yuo.2_Silent_p.I495I|ZFAT_uc010meh.2_Silent_p.I495I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.I495I|ZFAT_uc010mej.2_Silent_p.I445I|ZFAT_uc003yur.2_Silent_p.I495I	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	507					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CTTCTTGCTGGATGTCCCCAC	0.602													15	14					0	0	0.004007	0	0
FAM135B	51059	broad.mit.edu	37	8	139190783	139190783	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:139190783G>A	uc003yuy.2	-	10	1195	c.1024C>T	c.(1024-1026)CTG>TTG	p.L342L	FAM135B_uc003yux.2_Silent_p.L243L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	342										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CTCACCCTCAGGGTGTGGTGT	0.498										HNSCC(54;0.14)			12	26					0	0	0.001855	0	0
FAM135B	51059	broad.mit.edu	37	8	139263231	139263231	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:139263231A>C	uc003yuy.2	-	6	566	c.395T>G	c.(394-396)ATG>AGG	p.M132R	FAM135B_uc003yux.2_Missense_Mutation_p.M33R|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	132										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCTGCTGACCATCGGTGCCCC	0.572										HNSCC(54;0.14)			53	44					0	0	0.003610	0	0
COL22A1	169044	broad.mit.edu	37	8	139616993	139616993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:139616993C>T	uc003yvd.2	-	59	4571	c.4124G>A	c.(4123-4125)GGA>GAA	p.G1375E	COL22A1_uc011ljo.1_Missense_Mutation_p.G655E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1375	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GCCTGGGACTCCTTTCTCTCC	0.408										HNSCC(7;0.00092)			6	16					0	0	0.003080	0	0
COL22A1	169044	broad.mit.edu	37	8	139628273	139628273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:139628273G>A	uc003yvd.2	-	55	4342	c.3895C>T	c.(3895-3897)CCT>TCT	p.P1299S	COL22A1_uc011ljo.1_Missense_Mutation_p.P579S	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1299	Pro-rich.|Gly-rich.|Collagen-like 12.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCCTGACCAGGAAGCCCCATG	0.572										HNSCC(7;0.00092)			36	22					0	0	0.002222	0	0
KCNK9	51305	broad.mit.edu	37	8	140630829	140630829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:140630829C>T	uc003yvf.1	-	2	861	c.797G>A	c.(796-798)GGA>GAA	p.G266E	KCNK9_uc003yvg.1_Missense_Mutation_p.G266E|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	266	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			GTTGCGGTTTCCGGCGAGGGA	0.632													18	36					0	0	0.001216	0	0
KCNK9	51305	broad.mit.edu	37	8	140631316	140631316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:140631316C>T	uc003yvf.1	-	2	374	c.310G>A	c.(310-312)GAT>AAT	p.D104N	KCNK9_uc003yvg.1_Missense_Mutation_p.D104N|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	104	Extracellular (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			TTGCCCGCATCGGTGCCAGGT	0.612													9	7					0	0	0.006214	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141297807	141297807	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:141297807G>A	uc003yvj.2	-	13	2015	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	TRAPPC9_uc003yvh.2_Silent_p.F725F|TRAPPC9_uc010mel.1_Silent_p.F48F|TRAPPC9_uc003yvi.1_Silent_p.F618F	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	627					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GGAGAGACTCGAACTCCACTC	0.577													13	36					0	0	0.001368	0	0
DENND3	22898	broad.mit.edu	37	8	142151412	142151412	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:142151412C>T	uc003yvy.2	+	4	650	c.372C>T	c.(370-372)GAC>GAT	p.D124D	DENND3_uc003yvw.1_Silent_p.D137D|DENND3_uc003yvx.2_Missense_Mutation_p.T203I|DENND3_uc010mep.2_Silent_p.D137D	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	124	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCTCAAGGACTGCCTTTCCT	0.627													34	39					0	0	0.006999	0	0
DENND3	22898	broad.mit.edu	37	8	142190863	142190863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:142190863G>A	uc003yvy.2	+	17	2892	c.2614G>A	c.(2614-2616)GAG>AAG	p.E872K	DENND3_uc010mep.2_Missense_Mutation_p.E833K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	872										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GACGCTTCCGGAGACAACCCT	0.562													22	37					0	0	0.003330	0	0
FLJ43860	389690	broad.mit.edu	37	8	142446109	142446109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:142446109C>T	uc003ywi.2	-	28	3540	c.3459G>A	c.(3457-3459)ATG>ATA	p.M1153I	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	1153							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CCCTGTCTGCCATGGCCGCCA	0.677													9	14					0	0	0.006214	0	0
FLJ43860	389690	broad.mit.edu	37	8	142458068	142458068	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:142458068G>A	uc003ywi.2	-	21	2839	c.2758C>T	c.(2758-2760)CTG>TTG	p.L920L	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	920							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TCGCTGGGCAGGTTCAGCTCC	0.657													10	11					0	0	0.001368	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621226	144621226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144621226G>A	uc003yyd.2	-	2	340	c.311C>T	c.(310-312)CCT>CTT	p.P104L		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	104					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			CTGCGGGACAGGAGGCTGGCC	0.627													40	32					0	0	0.007835	0	0
PUF60	22827	broad.mit.edu	37	8	144900408	144900409	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144900408_144900409GG>AA	uc003yzs.2	-	7	621_622	c.557_558CC>TT	c.(556-558)GCC>GTT	p.A186V	SCRIB_uc003yzo.1_5'Flank|SCRIB_uc003yzp.1_5'Flank|PUF60_uc003yzr.2_Missense_Mutation_p.A126V|PUF60_uc003yzt.2_Missense_Mutation_p.A169V|PUF60_uc003yzq.2_Missense_Mutation_p.A143V|PUF60_uc003yzu.1_Missense_Mutation_p.A175V	NM_078480	NP_510965	Q9UHX1	PUF60_HUMAN	poly-U binding splicing factor 60KDa isoform a	186	RRM 1.|Inhibits homodimerization.|Inhibits transcriptional repression, interaction with ERCC3 and apoptosis induction.				apoptosis|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleus|ribonucleoprotein complex	DNA binding|nucleotide binding|protein binding|RNA binding				0	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			TCTGCTCCAAGGCCAGCTGTGC	0.658													4	5					0	0	0.004672	0	0
EPPK1	83481	broad.mit.edu	37	8	144940302	144940303	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144940302_144940303GG>TA	uc003zaa.1	-	2	15142_15143	c.15129_15130CC>TA	c.(15127-15132)AACCGC>AATAGC	p.R5044S		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5044						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCCAGGACGCGGTTCATCTCCT	0.678													7	380					0	0	0.004672	0	0
EPPK1	83481	broad.mit.edu	37	8	144947005	144947005	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144947005C>T	uc003zaa.1	-	1	430	c.417G>A	c.(415-417)AAG>AAA	p.K139K		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	139	Plectin 3.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCACAACCTCCTTCCCGATGG	0.677													6	22					0	0	0.001984	0	0
PLEC	5339	broad.mit.edu	37	8	144992838	144992838	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144992838G>A	uc003zaf.1	-	32	11732	c.11562C>T	c.(11560-11562)GCC>GCT	p.A3854A	PLEC_uc003zab.1_Silent_p.A3717A|PLEC_uc003zac.1_Silent_p.A3721A|PLEC_uc003zad.2_Silent_p.A3717A|PLEC_uc003zae.1_Silent_p.A3685A|PLEC_uc003zag.1_Silent_p.A3695A|PLEC_uc003zah.2_Silent_p.A3703A|PLEC_uc003zaj.2_Silent_p.A3744A	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3854	Globular 2.|Plectin 17.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGGCCACCTCGGCACTCAGCA	0.652													50	30					0	0	0.003610	0	0
PLEC	5339	broad.mit.edu	37	8	144994613	144994613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:144994613G>A	uc003zaf.1	-	32	9957	c.9787C>T	c.(9787-9789)CCC>TCC	p.P3263S	PLEC_uc003zab.1_Missense_Mutation_p.P3126S|PLEC_uc003zac.1_Missense_Mutation_p.P3130S|PLEC_uc003zad.2_Missense_Mutation_p.P3126S|PLEC_uc003zae.1_Missense_Mutation_p.P3094S|PLEC_uc003zag.1_Missense_Mutation_p.P3104S|PLEC_uc003zah.2_Missense_Mutation_p.P3112S|PLEC_uc003zaj.2_Missense_Mutation_p.P3153S	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3263	Plectin 9.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TGCTCCCGGGGAATGAGGCCC	0.667													8	11					0	0	0.003080	0	0
SPATC1	375686	broad.mit.edu	37	8	145094953	145094954	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:145094953_145094954GG>AA	uc011lkw.1	+	2	457_458	c.355_356GG>AA	c.(355-357)GGC>AAC	p.G119N	SPATC1_uc011lkx.1_Missense_Mutation_p.G119N	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	119										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCCCTGACAGGCACCCTCAGC	0.649													12	27					0	0	0.004672	0	0
OPLAH	26873	broad.mit.edu	37	8	145112553	145112553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:145112553G>A	uc003zar.3	-	10	1302	c.1220C>T	c.(1219-1221)CCC>CTC	p.P407L	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_3'UTR	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	407							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AAAAATGCAGGGGAAGGAGGC	0.637													9	16					0	0	0.006214	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145756216	145756216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:145756216G>A	uc003zdt.1	-	11	3482	c.2927C>T	c.(2926-2928)CCC>CTC	p.P976L	MGC70857_uc003zdp.1_5'Flank|MGC70857_uc003zdq.1_5'Flank|MGC70857_uc003zdr.1_5'Flank|ARHGAP39_uc011llk.1_Missense_Mutation_p.P976L|ARHGAP39_uc003zds.1_Missense_Mutation_p.P1007L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	976	Rho-GAP.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CGGGATCAGGGGCTCCTCCAG	0.706													11	9					0	0	0.001368	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773436	145773436	+	Missense_Mutation	SNP	G	A	A	rs151220486		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:145773436G>A	uc003zdt.1	-	6	1589	c.1034C>T	c.(1033-1035)CCC>CTC	p.P345L	ARHGAP39_uc011llk.1_Missense_Mutation_p.P345L|ARHGAP39_uc003zds.1_Missense_Mutation_p.P345L	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	345	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						CGACCGCTGGGGAGAGCCGGC	0.692													8	16					0	0	0.004482	0	0
ZNF34	80778	broad.mit.edu	37	8	145999287	145999287	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:145999287G>A	uc003zdy.3	-	6	1149	c.1047C>T	c.(1045-1047)TCC>TCT	p.S349S	ZNF34_uc010mgb.2_Silent_p.S246S|ZNF34_uc003zdx.3_Silent_p.S328S	NM_030580	NP_085057	Q8IZ26	ZNF34_HUMAN	zinc finger protein 34	349	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.221)	OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;5.18e-38)|all cancers(56;4.41e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.0179)		GATAAATCAGGGAAGAGTAGG	0.512													11	25					0	0	0.000673	0	0
ZNF517	340385	broad.mit.edu	37	8	146033412	146033412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr8:146033412C>T	uc003zed.1	+	5	1218	c.1111C>T	c.(1111-1113)CCG>TCG	p.P371S	ZNF517_uc010mgd.1_Missense_Mutation_p.P277S|ZNF517_uc003zee.1_RNA|ZNF517_uc011llm.1_Missense_Mutation_p.P277S|ZNF517_uc003zef.1_Intron	NM_213605	NP_998770	Q6ZMY9	ZN517_HUMAN	zinc finger protein 517	371	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)			CCACGAGTGCCCGGTGTGCGG	0.746													3	4					0	0	0.004672	0	0
FOXD4	2298	broad.mit.edu	37	9	117682	117682	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:117682G>A	uc003zfz.2	-	1	736	c.438C>T	c.(436-438)CCC>CCT	p.P146P		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	146	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		TCTGCCAGGCGGGGAACTTGC	0.642													35	77					0	0	0.003214	0	0
CD274	29126	broad.mit.edu	37	9	5463090	5463090	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:5463090G>A	uc003zje.2	+	4	703	c.651G>A	c.(649-651)GAG>GAA	p.E217E	C9orf46_uc003zjd.2_Intron|CD274_uc011lmb.1_3'UTR|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_Silent_p.E103E	NM_014143	NP_054862	Q9NZQ7	PD1L1_HUMAN	CD274 molecule precursor	217	Ig-like C2-type.|Extracellular (Potential).				cell proliferation|cell surface receptor linked signaling pathway|immune response|T cell costimulation	endomembrane system|integral to membrane	receptor activity			lung(1)|central_nervous_system(1)	2	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000742)|Lung(218;0.111)		TAGATCCTGAGGAAAACCATA	0.308			T	CIITA	PMBL|Hodgkin Lymphona|								19	10					0	0	0.001882	0	0
PTPRD	5789	broad.mit.edu	37	9	8501060	8501060	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:8501060C>T	uc003zkk.2	-	23	2534	c.1823_splice	c.e23-1	p.K608_splice	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Splice_Site_p.K608_splice|PTPRD_uc003zkm.2_Splice_Site_p.K595_splice|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D						transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GCTGACGGCTCTTATTTTGGT	0.343										TSP Lung(15;0.13)			4	4					0	0	0.000248	0	0
C9orf93	203238	broad.mit.edu	37	9	15578922	15578922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:15578922G>A	uc003zmd.2	+	4	568	c.253G>A	c.(253-255)GAA>AAA	p.E85K	C9orf93_uc010mih.1_Missense_Mutation_p.E85K|C9orf93_uc003zme.2_5'UTR|C9orf93_uc011lmu.1_Missense_Mutation_p.E85K|C9orf93_uc003zmc.2_Missense_Mutation_p.E85K	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	85	Potential.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		ACAAAGTCTGGAATATGACCT	0.473													14	16					0	0	0.002450	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18680342	18680342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:18680342C>T	uc003zne.3	+	11	1296	c.1169C>T	c.(1168-1170)TCC>TTC	p.S390F	ADAMTSL1_uc003znb.2_Missense_Mutation_p.S373F|ADAMTSL1_uc003znc.3_Missense_Mutation_p.S390F	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	390	TSP type-1 2.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GCGTGCTCCTCCTCGTGTGGG	0.597													8	7					0	0	0.000673	0	0
DENND4C	55667	broad.mit.edu	37	9	19299242	19299242	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:19299242G>C	uc003znq.2	+	4	448	c.415G>C	c.(415-417)GCA>CCA	p.A139P	DENND4C_uc011lnc.1_5'UTR	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	139	DENN.					integral to membrane				ovary(1)|skin(1)	2						AGTCCATGATGCATTAATATT	0.269													7	4					0	0	0.006214	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786550	19786550	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:19786550C>T	uc003zoa.1	-	1	377	c.315G>A	c.(313-315)AAG>AAA	p.K105K	SLC24A2_uc003zob.1_Silent_p.K105K	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	105	Extracellular (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		ACTCGCCTTCCTTAGAAAGAG	0.453													28	18					0	0	0.001786	0	0
KLHL9	55958	broad.mit.edu	37	9	21334327	21334327	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:21334327G>A	uc003zoy.2	-	1	1103	c.532C>T	c.(532-534)CTG>TTG	p.L178L	KLHL9_uc003zow.2_Intron|KLHL9_uc003zox.2_RNA	NM_018847	NP_061335	Q9P2J3	KLHL9_HUMAN	kelch-like 9	178	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|midbody				ovary(3)|skin(1)	4				Lung(24;8.52e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.118)		AAGTTCTTCAGGATGAAATTA	0.363													8	4					0	0	0.003080	0	0
TEK	7010	broad.mit.edu	37	9	27228234	27228234	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:27228234G>A	uc003zqi.3	+	22	3673	c.3231G>A	c.(3229-3231)GAG>GAA	p.E1077E	TEK_uc011lno.1_Silent_p.E1034E|TEK_uc011lnp.1_Silent_p.E929E	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	1077	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		GCTGGCGGGAGAAGCCTTATG	0.423													31	36					0	0	0.006999	0	0
ACO1	48	broad.mit.edu	37	9	32419040	32419040	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:32419040C>T	uc003zqw.3	+	7	818	c.663C>T	c.(661-663)GTC>GTT	p.V221V	ACO1_uc010mjh.1_Silent_p.V55V|ACO1_uc003zqx.3_Silent_p.V221V|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	221					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		TTGCAGGTGTCGGTGGTATTG	0.488													14	19					0	0	0.001855	0	0
TAF1L	138474	broad.mit.edu	37	9	32634945	32634945	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:32634945C>T	uc003zrg.1	-	1	723	c.633G>A	c.(631-633)GAG>GAA	p.E211E	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	211					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GAGGTCCCATCTCAGATTCTG	0.483													24	44					0	0	0.004656	0	0
TAF1L	138474	broad.mit.edu	37	9	32634978	32634978	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:32634978C>T	uc003zrg.1	-	1	690	c.600G>A	c.(598-600)GTG>GTA	p.V200V	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	200					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TACTGAAATCCACTTTCTCTG	0.473													26	28					0	0	0.006320	0	0
CCL21	6366	broad.mit.edu	37	9	34710039	34710039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:34710039G>A	uc003zvo.2	-	1	109	c.25C>T	c.(25-27)CTC>TTC	p.L9F		NM_002989	NP_002980	O00585	CCL21_HUMAN	small inducible cytokine A21 precursor	9					activation of Rho GTPase activity|cell maturation|cell-cell signaling|dendritic cell chemotaxis|dendritic cell dendrite assembly|establishment of T cell polarity|immune response|immunological synapse formation|inflammatory response|mesangial cell-matrix adhesion|negative regulation of leukocyte apoptosis|positive regulation of actin filament polymerization|positive regulation of cell adhesion mediated by integrin|positive regulation of cell-matrix adhesion|positive regulation of dendritic cell antigen processing and presentation|positive regulation of ERK1 and ERK2 cascade|positive regulation of filopodium assembly|positive regulation of glycoprotein biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of myeloid dendritic cell chemotaxis|positive regulation of neutrophil chemotaxis|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of pseudopodium assembly|positive regulation of receptor-mediated endocytosis|release of sequestered calcium ion into cytosol|response to prostaglandin E stimulus|ruffle organization|T cell costimulation	extracellular space	CCR7 chemokine receptor binding|chemokine activity				0	all_epithelial(49;0.0899)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		AGGATAAGGAGGCTCAGAGCC	0.607													6	4					0	0	0.001984	0	0
UNC13B	10497	broad.mit.edu	37	9	35398937	35398937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:35398937C>T	uc003zwq.2	+	32	4025	c.3733C>T	c.(3733-3735)CGG>TGG	p.R1245W	UNC13B_uc003zwr.2_Missense_Mutation_p.R1245W	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	1245					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GGGCCAGGTTCGGGGCACAGG	0.577													7	24					0	0	0.001984	0	0
TPM2	7169	broad.mit.edu	37	9	35689740	35689740	+	Silent	SNP	G	C	C	rs138151922		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:35689740G>C	uc003zxq.2	-	1	314	c.75C>G	c.(73-75)GCC>GCG	p.A25A	TPM2_uc003zxr.2_Silent_p.A25A|TPM2_uc003zxs.2_Silent_p.A25A|TPM2_uc010mkz.2_Silent_p.A25A|TPM2_uc011lpa.1_Silent_p.A25A	NM_213674	NP_998839	P07951	TPM2_HUMAN	tropomyosin 2 (beta) isoform 2	25	By similarity.				muscle filament sliding|regulation of ATPase activity	cytosol|muscle thin filament tropomyosin	actin binding|structural constituent of muscle			ovary(1)	1	all_epithelial(49;0.121)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TGTCGGCTTCGGCCTGCTCGG	0.677													61	81					0	0	0.003610	0	0
NPR2	4882	broad.mit.edu	37	9	35800027	35800027	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:35800027C>T	uc003zyd.2	+	4	996	c.996C>T	c.(994-996)CTC>CTT	p.L332L	NPR2_uc010mlb.2_Silent_p.L332L	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	332	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	AGATGAACCTCATCGCTGGCT	0.527													37	65					0	0	0.003755	0	0
HINT2	84681	broad.mit.edu	37	9	35813502	35813502	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:35813502G>A	uc003zyh.2	-	3	333	c.267C>T	c.(265-267)TTC>TTT	p.F89F	SPAG8_uc003zye.2_5'Flank|SPAG8_uc003zyf.2_5'Flank|SPAG8_uc003zyg.2_5'Flank|HINT2_uc003zyi.2_Silent_p.F85F	NM_032593	NP_115982	Q9BX68	HINT2_HUMAN	PKCI-1-related HIT protein precursor	89	HIT.				apoptosis|steroid biosynthetic process	mitochondrion	hydrolase activity				0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			GAATGACCAGGAAGTGCACAG	0.567											OREG0019179	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	15					0	0	0.001368	0	0
CLTA	1211	broad.mit.edu	37	9	36198988	36198988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:36198988C>T	uc003zzc.2	+	3	430	c.268C>T	c.(268-270)CCA>TCA	p.P90S	CLTA_uc003zzd.2_Missense_Mutation_p.P90S|CLTA_uc003zze.2_Missense_Mutation_p.P90S|CLTA_uc011lpk.1_Missense_Mutation_p.P90S|CLTA_uc003zzf.1_RNA	NM_007096	NP_009027	P09496	CLCA_HUMAN	clathrin, light polypeptide A isoform b	90					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol	structural molecule activity			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			AAGTAATGGTCCAACAGACAG	0.398													23	36					0	0	0.002299	0	0
RNF38	152006	broad.mit.edu	37	9	36390467	36390467	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:36390467G>A	uc003zzh.2	-	2	350	c.159C>T	c.(157-159)TTC>TTT	p.F53F	RNF38_uc003zzi.2_Intron|RNF38_uc003zzj.2_5'UTR|RNF38_uc003zzk.2_Intron|RNF38_uc003zzl.2_Intron|RNF38_uc003zzm.2_5'UTR	NM_022781	NP_073618	Q9H0F5	RNF38_HUMAN	ring finger protein 38 isoform 1	53							zinc ion binding			central_nervous_system(1)	1			STAD - Stomach adenocarcinoma(86;0.228)			TAAGAACCTGGAAGAAAGCTT	0.438													25	34					0	0	0.005443	0	0
RG9MTD3	158234	broad.mit.edu	37	9	37777687	37777687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:37777687C>T	uc004aai.2	+	9	1011	c.934C>T	c.(934-936)CGG>TGG	p.R312W	RG9MTD3_uc011lqo.1_Missense_Mutation_p.R252W|RG9MTD3_uc011lqp.1_Missense_Mutation_p.R225W|RG9MTD3_uc011lqq.1_Missense_Mutation_p.R192W|RG9MTD3_uc004aaj.2_RNA|RG9MTD3_uc004aak.2_Missense_Mutation_p.R217W	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain	312							methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		CTATATTCTTCGGAACTCAGT	0.338													10	17					0	0	0.006214	0	0
FAM75A2	642265	broad.mit.edu	37	9	39361075	39361075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:39361075C>T	uc004abm.2	+	4	3342	c.3313C>T	c.(3313-3315)CCC>TCC	p.P1105S		NM_001040065	NP_001035154	Q5RGS2	F75A2_HUMAN	hypothetical protein LOC642265	1105						integral to membrane					0				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GCCAATGTTTCCCCCTATTCA	0.483													91	176					0	0	0.003610	0	0
MIR204	406987	broad.mit.edu	37	9	73424915	73424915	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:73424915C>T	hsa-mir-204|MI0000284	-			c.86C>T			TRPM3_uc004ahu.2_Intron|TRPM3_uc004ahv.2_Intron|TRPM3_uc004ahw.2_Intron|TRPM3_uc004ahx.2_Intron|TRPM3_uc004ahy.2_Intron|TRPM3_uc004ahz.2_Intron|TRPM3_uc004aia.2_Intron|TRPM3_uc004aib.2_Intron|TRPM3_uc004aid.2_Intron|TRPM3_uc004aic.2_Intron|TRPM3_uc010mor.2_Intron|TRPM3_uc004aie.2_Intron|TRPM3_uc004aif.2_Intron|TRPM3_uc004aig.2_Intron|uc004aih.1_RNA																	0						TTGAACGTCCCTTTGCCTTCC	0.443													41	53					0	0	0.003610	0	0
TMC1	117531	broad.mit.edu	37	9	75387345	75387345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:75387345C>T	uc004aiz.1	+	13	1298	c.758C>T	c.(757-759)TCC>TTC	p.S253F	TMC1_uc010moz.1_Missense_Mutation_p.S211F|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.S107F|TMC1_uc010mpa.1_Missense_Mutation_p.S107F	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	253	Extracellular (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						GCACAATATTCCGTTCTCTTT	0.383													39	85					0	0	0.002852	0	0
ANXA1	301	broad.mit.edu	37	9	75775776	75775776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:75775776G>A	uc004ajf.1	+	6	516	c.442G>A	c.(442-444)GAA>AAA	p.E148K	ANXA1_uc004aje.1_Missense_Mutation_p.E148K|ANXA1_uc004ajg.1_Missense_Mutation_p.E148K	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	148	Annexin 2.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	AACTAACAAAGAAATCAGAGA	0.328													61	94					0	0	0.003610	0	0
RORB	6096	broad.mit.edu	37	9	77282800	77282800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:77282800C>T	uc004aji.2	+	8	1176	c.1127C>T	c.(1126-1128)GCT>GTT	p.A376V	RORB_uc004ajh.2_Missense_Mutation_p.A365V	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	376	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TTCTCATCTGCTGTTCTGATA	0.398													18	39					0	0	0.002299	0	0
TRPM6	140803	broad.mit.edu	37	9	77370337	77370337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:77370337C>T	uc004ajl.1	-	28	5076	c.4838G>A	c.(4837-4839)GGA>GAA	p.G1613E	TRPM6_uc004ajk.1_Missense_Mutation_p.G1608E|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G564E|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.G569E	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1613	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCTGTTTTCTCCTGGCTCTGG	0.418													18	36					0	0	0.007413	0	0
TRPM6	140803	broad.mit.edu	37	9	77442714	77442714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:77442714G>A	uc004ajl.1	-	7	1059	c.821C>T	c.(820-822)TCT>TTT	p.S274F	TRPM6_uc004ajk.1_Missense_Mutation_p.S269F|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.S274F|TRPM6_uc010mpd.1_Missense_Mutation_p.S274F|TRPM6_uc010mpe.1_Missense_Mutation_p.S274F|TRPM6_uc004ajn.1_Missense_Mutation_p.S274F	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	274	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTTCTGCAGAGAGAGGTACTT	0.517													21	42					0	0	0.002780	0	0
C9orf41	138199	broad.mit.edu	37	9	77613660	77613660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:77613660G>A	uc004ajq.2	-	5	917	c.764C>T	c.(763-765)CCT>CTT	p.P255L	C9orf41_uc011lsi.1_RNA	NM_152420	NP_689633	Q8N4J0	CI041_HUMAN	hypothetical protein LOC138199	255										ovary(1)|skin(1)	2						ATGGATCCAAGGATAAAGTTT	0.348													13	18					0	0	0.002450	0	0
PCSK5	5125	broad.mit.edu	37	9	78638703	78638703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:78638703G>A	uc004ajz.2	+	4	999	c.461G>A	c.(460-462)GGA>GAA	p.G154E	PCSK5_uc004ajy.2_Missense_Mutation_p.G154E|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	154	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						AATATCGAAGGAGCCTGGAAG	0.453													22	32					0	0	0.003954	0	0
PCSK5	5125	broad.mit.edu	37	9	78638706	78638706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:78638706C>T	uc004ajz.2	+	4	1002	c.464C>T	c.(463-465)GCC>GTC	p.A155V	PCSK5_uc004ajy.2_Missense_Mutation_p.A155V|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	155	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						ATCGAAGGAGCCTGGAAGAGA	0.453													21	31					0	0	0.003954	0	0
Unknown	0	broad.mit.edu	37	9	78953354	78953354	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:78953354C>T	uc004akc.1	+	7	1352	c.1132C>T	c.(1132-1134)CAA>TAA	p.Q378*						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		GACTTGTGATCAATGCAAAGG	0.473													6	16					0	0	0.001984	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321182	79321182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:79321182G>A	uc010mpk.2	-	8	6132	c.6008C>T	c.(6007-6009)TCA>TTA	p.S2003L	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2003					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACCTAGGTATGATTTTTCTTG	0.413													14	21					0	0	0.004007	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325873	79325873	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:79325873G>A	uc010mpk.2	-	8	1441	c.1317C>T	c.(1315-1317)TCC>TCT	p.S439S		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	439					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AGCTCTCCTTGGATGAGCGGC	0.572													9	13					0	0	0.006214	0	0
VPS13A	23230	broad.mit.edu	37	9	79959074	79959074	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:79959074C>T	uc004akr.2	+	51	7292	c.7032C>T	c.(7030-7032)ATC>ATT	p.I2344I	VPS13A_uc004akp.3_Silent_p.I2344I|VPS13A_uc004akq.3_Silent_p.I2344I|VPS13A_uc004aks.2_Silent_p.I2305I	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2344					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTTAGTGTATCCCCTTTTGGC	0.284													12	26					0	0	0.001368	0	0
TLE4	7091	broad.mit.edu	37	9	82321672	82321672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:82321672C>T	uc004ald.2	+	11	1622	c.773C>T	c.(772-774)TCC>TTC	p.S258F	TLE4_uc004alc.2_Missense_Mutation_p.S265F|TLE4_uc010mpr.2_Missense_Mutation_p.S144F|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.S233F|TLE4_uc010mps.2_Intron|TLE4_uc004alf.2_Missense_Mutation_p.S204F	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						GATCCATCTTCCCCTCGAGGG	0.498													27	53					0	0	0.002096	0	0
TLE4	7091	broad.mit.edu	37	9	82324572	82324572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:82324572C>T	uc004ald.2	+	15	2222	c.1373C>T	c.(1372-1374)CCA>CTA	p.P458L	TLE4_uc004alc.2_Missense_Mutation_p.P433L|TLE4_uc010mpr.2_Missense_Mutation_p.P312L|TLE4_uc004ale.2_Missense_Mutation_p.P70L|TLE4_uc011lsq.1_Missense_Mutation_p.P401L|TLE4_uc010mps.2_Missense_Mutation_p.P357L|TLE4_uc004alf.2_Missense_Mutation_p.P372L	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						ATGCGTGTGCCAGCAATACCT	0.458													13	21					0	0	0.004007	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609301	84609301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:84609301G>A	uc004amn.2	+	4	3963	c.3916G>A	c.(3916-3918)GGA>AGA	p.G1306R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1306						integral to membrane					0						AGAGCTTGATGGAGGGGATGC	0.532													9	10					0	0	0.000673	0	0
GKAP1	80318	broad.mit.edu	37	9	86354623	86354623	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:86354623G>A	uc004amy.2	-	13	1586	c.1090C>T	c.(1090-1092)CAG>TAG	p.Q364*	GKAP1_uc004amz.2_Nonsense_Mutation_p.Q313*	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	364					signal transduction	Golgi apparatus					0						CACCTACACTGGTCGGATTCA	0.333													12	33					0	0	0.000978	0	0
KIF27	55582	broad.mit.edu	37	9	86504034	86504034	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:86504034A>C	uc004ana.2	-	7	2088	c.1944T>G	c.(1942-1944)GAT>GAG	p.D648E	KIF27_uc010mpw.2_Missense_Mutation_p.D648E|KIF27_uc010mpx.2_Missense_Mutation_p.D648E	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	648					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CTGATTCTTCATCATCACTGT	0.343													27	43					0	0	0.007291	0	0
CDK20	23552	broad.mit.edu	37	9	90586150	90586150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:90586150C>T	uc004apr.2	-	3	596	c.290G>A	c.(289-291)AGG>AAG	p.R97K	CDK20_uc004aps.2_Missense_Mutation_p.R97K|CDK20_uc004apt.2_Missense_Mutation_p.R110K|CDK20_uc004apu.2_Missense_Mutation_p.R97K	NM_001039803	NP_001034892	Q8IZL9	CDK20_HUMAN	cell cycle related kinase isoform 3	97	Protein kinase.				cell division|multicellular organismal development	cilium|mitochondrion|nucleus	ATP binding|cyclin-dependent protein kinase activity			skin(1)	1						GGCTAGTGGCCTCTGGGCATG	0.582													6	16					0	0	0.003080	0	0
C9orf47	286223	broad.mit.edu	37	9	91606022	91606022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:91606022G>A	uc004aqd.2	+	1	245	c.112G>A	c.(112-114)GAC>AAC	p.D38N	S1PR3_uc004aqe.2_5'Flank|C9orf47_uc004aqc.1_Missense_Mutation_p.D38N	NM_001001938	NP_001001938	Q6ZRZ4	CI047_HUMAN	hypothetical protein LOC286223 isoform 1	38						extracellular region					0						CCAGACCTCGGACCTGGTTCC	0.602													5	8					0	0	0.001168	0	0
SECISBP2	79048	broad.mit.edu	37	9	91949602	91949602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:91949602C>T	uc004aqj.1	+	7	1126	c.1046C>T	c.(1045-1047)CCT>CTT	p.P349L	SECISBP2_uc010mqn.1_Missense_Mutation_p.P310L|SECISBP2_uc004aqi.1_Missense_Mutation_p.P237L|SECISBP2_uc011ltk.1_Missense_Mutation_p.P348L|SECISBP2_uc004aqk.1_Missense_Mutation_p.P276L|SECISBP2_uc010mqo.1_Missense_Mutation_p.P54L|SECISBP2_uc011ltl.1_Missense_Mutation_p.P281L	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	349					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						TCTTCGGATCCTTCCTACAAC	0.269													14	26					0	0	0.001855	0	0
SECISBP2	79048	broad.mit.edu	37	9	91961898	91961898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:91961898C>T	uc004aqj.1	+	11	1617	c.1537C>T	c.(1537-1539)CCA>TCA	p.P513S	SECISBP2_uc011ltk.1_Missense_Mutation_p.P512S|SECISBP2_uc004aqk.1_Missense_Mutation_p.P440S|SECISBP2_uc010mqo.1_Missense_Mutation_p.P218S|SECISBP2_uc011ltl.1_Missense_Mutation_p.P445S	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	513					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						CTCCAGCGCCCCACTGATGAA	0.557													17	24					0	0	0.004990	0	0
SYK	6850	broad.mit.edu	37	9	93650881	93650881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:93650881G>A	uc004aqz.2	+	13	2012	c.1807G>A	c.(1807-1809)GAT>AAT	p.D603N	SYK_uc004ara.2_Missense_Mutation_p.D580N|SYK_uc004arb.2_Missense_Mutation_p.D580N|SYK_uc004arc.2_Missense_Mutation_p.D603N|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	603	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity	p.D580H(1)		lung(2)|stomach(1)|ovary(1)|skin(1)	5						AGAGATGTACGATCTCATGAA	0.478			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								4	7					0	0	0.000248	0	0
ROR2	4920	broad.mit.edu	37	9	94495542	94495542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:94495542C>T	uc004arj.1	-	6	998	c.799G>A	c.(799-801)GAG>AAG	p.E267K	ROR2_uc004ari.1_Missense_Mutation_p.E127K|ROR2_uc004ark.2_Missense_Mutation_p.E267K	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	267	FZ.|Extracellular (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						ATGGTGTACTCCTGGCGGCAC	0.672													8	4					0	0	0.004482	0	0
FGD3	89846	broad.mit.edu	37	9	95776252	95776252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:95776252G>A	uc004asw.2	+	9	1782	c.1154G>A	c.(1153-1155)GGC>GAC	p.G385D	FGD3_uc004asx.2_Missense_Mutation_p.G385D|FGD3_uc004asz.2_Missense_Mutation_p.G385D|FGD3_uc004ata.2_Missense_Mutation_p.G188D|FGD3_uc011luc.1_5'Flank	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	385	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						GCCAAGAACGGCACCCCCCAG	0.617													21	56					0	0	0.002299	0	0
FGD3	89846	broad.mit.edu	37	9	95782638	95782638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:95782638G>A	uc004asw.2	+	13	2054	c.1426G>A	c.(1426-1428)GAA>AAA	p.E476K	FGD3_uc004asx.2_Missense_Mutation_p.E476K|FGD3_uc004asz.2_Missense_Mutation_p.E476K|FGD3_uc004ata.2_Missense_Mutation_p.E279K|FGD3_uc011luc.1_Missense_Mutation_p.E79K	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	476					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						ACAGAACAGCGAAACCTTCAA	0.567													8	12					0	0	0.004482	0	0
WNK2	65268	broad.mit.edu	37	9	96002178	96002179	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:96002178_96002179GG>AA	uc004ati.1	+	6	1462_1463	c.1462_1463GG>AA	c.(1462-1464)GGA>AAA	p.G488K	WNK2_uc011lud.1_Missense_Mutation_p.G488K|WNK2_uc004atj.2_Missense_Mutation_p.G488K|WNK2_uc004atk.2_Missense_Mutation_p.G125K|WNK2_uc010mrc.1_Missense_Mutation_p.G488K|WNK2_uc010mrd.1_Missense_Mutation_p.G125K	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	488					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						GAAACTGAAGGGAAAGCCCAAG	0.599													9	4					0	0	0.004672	0	0
FAM120A	23196	broad.mit.edu	37	9	96261096	96261096	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:96261096C>T	uc004atw.2	+	5	983	c.958C>T	c.(958-960)CGA>TGA	p.R320*	FAM120A_uc004atv.2_Nonsense_Mutation_p.R320*|FAM120A_uc004atx.2_Nonsense_Mutation_p.R102*|FAM120A_uc004aty.2_Nonsense_Mutation_p.R102*	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	320						cytoplasm|plasma membrane	RNA binding				0						CAAAGTTATTCGATTTAAGAG	0.333													47	65					0	0	0.003610	0	0
PHF2	5253	broad.mit.edu	37	9	96429433	96429433	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:96429433C>T	uc004aub.2	+	17	2406	c.2259C>T	c.(2257-2259)GTC>GTT	p.V753V	PHF2_uc011lug.1_Silent_p.V636V|PHF2_uc004auc.2_Silent_p.V173V	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	753					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		ATGCCAGAGTCAAGAAGGAGA	0.642													14	17					0	0	0.002450	0	0
FAM22F	54754	broad.mit.edu	37	9	97083470	97083470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:97083470G>A	uc004aup.1	-	4	908	c.887C>T	c.(886-888)TCG>TTG	p.S296L		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	296											0		Acute lymphoblastic leukemia(62;0.136)				CATCCACTGCGATTTCTGAAT	0.642													5	3					0	0	0.001168	0	0
LOC441455	441455	broad.mit.edu	37	9	99489118	99489118	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:99489118C>T	uc011luo.1	+	1		c.1016C>T				NR_026792				Homo sapiens makorin ring finger protein 1 pseudogene, mRNA (cDNA clone IMAGE:5556543), with apparent retained intron.												0						CCAAGTGAGTCCTGGGTGGAG	0.448													19	10					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	9	99884335	99884335	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:99884335G>A	uc004aww.1	-	2		c.1459C>T								Homo sapiens cDNA FLJ34611 fis, clone KIDNE2014112.																		CTGGCTGGGAGGAGGGCCCAG	0.617													5	6					0	0	0.001984	0	0
ANKS6	203286	broad.mit.edu	37	9	101498825	101498825	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:101498825G>A	uc004ayu.2	-	15	2613	c.2592C>T	c.(2590-2592)GCC>GCT	p.A864A	ANKS6_uc004ayt.2_Silent_p.A563A|ANKS6_uc004ayv.1_Silent_p.A327A|ANKS6_uc004ayw.1_Silent_p.A447A|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	864										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				TGTTGCCAGGGGCCCTGGTGT	0.577													3	9					0	0	0.000248	0	0
COL15A1	1306	broad.mit.edu	37	9	101748166	101748166	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:101748166G>A	uc004azb.1	+	3	626	c.420G>A	c.(418-420)GAG>GAA	p.E140E	COL15A1_uc004aza.2_Silent_p.E140E	NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	140	TSP N-terminal.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				ACTACACGGAGCCAGGCTCCC	0.602													19	50					0	0	0.001216	0	0
COL15A1	1306	broad.mit.edu	37	9	101787237	101787237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:101787237G>A	uc004azb.1	+	15	2142	c.1936G>A	c.(1936-1938)GGA>AGA	p.G646R		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	646	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GGGACCCCCTGGATCTCCTGG	0.572													11	27					0	0	0.001368	0	0
COL15A1	1306	broad.mit.edu	37	9	101810096	101810096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:101810096G>A	uc004azb.1	+	27	2914	c.2708G>A	c.(2707-2709)GGA>GAA	p.G903E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	903	Triple-helical region 5 (COL5).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GGACATAAAGGAGAATTTGGC	0.542													37	80					0	0	0.007835	0	0
NR4A3	8013	broad.mit.edu	37	9	102609826	102609826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:102609826C>T	uc004baf.1	+	7	2291	c.1562C>T	c.(1561-1563)TCC>TTC	p.S521F	NR4A3_uc004bag.1_Missense_Mutation_p.S521F|NR4A3_uc004bai.2_Missense_Mutation_p.S532F	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	521					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				AAAGACTTTTCCTTAAATTTG	0.478			T	EWSR1	extraskeletal myxoid chondrosarcoma								26	35					0	0	0.004656	0	0
INVS	27130	broad.mit.edu	37	9	103014671	103014671	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:103014671C>T	uc004bap.1	+	9	1397	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	INVS_uc010mta.1_Silent_p.F299F|INVS_uc011lve.1_Silent_p.F299F|INVS_uc004bao.1_Silent_p.F395F|INVS_uc004baq.1_Silent_p.F299F|INVS_uc004bar.1_Silent_p.F299F|INVS_uc010mtb.1_Silent_p.F69F	NM_014425	NP_055240	Q9Y283	INVS_HUMAN	inversin isoform a	395	ANK 12.				negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|membrane|microtubule|nucleus|spindle	calmodulin binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.056)				CTCCACTTTTCCGAGCCTGTG	0.413													23	23					0	0	0.001882	0	0
TEX10	54881	broad.mit.edu	37	9	103088589	103088589	+	Silent	SNP	G	A	A	rs150703426		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:103088589G>A	uc004bas.2	-	9	2189	c.1974C>T	c.(1972-1974)CAC>CAT	p.H658H	TEX10_uc011lvf.1_Silent_p.H497H|TEX10_uc011lvg.1_Silent_p.H661H	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	658						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		GCTACCTCATGTGCAGTATCC	0.428													11	17					0	0	0.001368	0	0
LPPR1	54886	broad.mit.edu	37	9	104032177	104032177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:104032177G>A	uc004bbb.2	+	3	478	c.79G>A	c.(79-81)GGG>AGG	p.G27R	LPPR1_uc011lvi.1_Missense_Mutation_p.G3R|LPPR1_uc004bbc.2_Missense_Mutation_p.G27R|LPPR1_uc010mtc.2_Missense_Mutation_p.G11R	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	27	Helical; (Potential).					integral to membrane	catalytic activity				0						CATCATGGCTGGGACAGTGCT	0.522													11	28					0	0	0.001368	0	0
GRIN3A	116443	broad.mit.edu	37	9	104432633	104432633	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:104432633G>A	uc004bbp.1	-	3	2662	c.2061C>T	c.(2059-2061)ATC>ATT	p.I687I	GRIN3A_uc004bbq.1_Silent_p.I687I	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	687	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	AGACGGCAGTGATGTGCAGAG	0.498													34	45					0	0	0.006230	0	0
OR13C8	138802	broad.mit.edu	37	9	107331863	107331863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:107331863G>A	uc011lvo.1	+	1	415	c.415G>A	c.(415-417)GGT>AGT	p.G139S		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CATGAGCAAGGGTGCCTATGT	0.547													14	31					0	0	0.002450	0	0
OR13C9	286362	broad.mit.edu	37	9	107380476	107380476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:107380476C>T	uc011lvr.1	-	1	10	c.10G>A	c.(10-12)GAA>AAA	p.E4K		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTTTGGTTTTCCCATTCCATT	0.308													14	15					0	0	0.004007	0	0
OR13D1	286365	broad.mit.edu	37	9	107456939	107456939	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:107456939C>T	uc011lvs.1	+	1	237	c.237C>T	c.(235-237)ATC>ATT	p.I79I		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	79	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCCTCATTATCATCACCATCT	0.453													59	80					0	0	0.003610	0	0
ABCA1	19	broad.mit.edu	37	9	107555133	107555133	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:107555133C>T	uc004bcl.2	-	42	6004	c.5691G>A	c.(5689-5691)CGG>CGA	p.R1897R		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	1897			R -> W (in HDLD2; uncertain pathogenicity).		Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCTGTCTTTCCCGCCTCACAT	0.398													13	28					0	0	0.001368	0	0
TAL2	6887	broad.mit.edu	37	9	108425076	108425076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:108425076C>T	uc004bct.2	+	1	339	c.299C>T	c.(298-300)TCA>TTA	p.S100L		NM_005421	NP_005412	Q16559	TAL2_HUMAN	T-cell acute lymphocytic leukemia 2	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CAGGTTCCTTCACCTGGTCCA	0.572			T	TRB@	T-ALL								11	7					0	0	0.000978	0	0
ZNF462	58499	broad.mit.edu	37	9	109689644	109689644	+	Missense_Mutation	SNP	C	T	T	rs149174145		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:109689644C>T	uc004bcz.2	+	3	3740	c.3451C>T	c.(3451-3453)CCT>TCT	p.P1151S	ZNF462_uc010mto.2_Missense_Mutation_p.P999S|ZNF462_uc004bda.2_Missense_Mutation_p.P999S	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1151					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CAGACAGGCTCCTCCCACAGC	0.547													30	41					0	0	0.001786	0	0
SVEP1	79987	broad.mit.edu	37	9	113170290	113170290	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:113170290G>A	uc010mtz.2	-	38	7927	c.7590C>T	c.(7588-7590)CTC>CTT	p.L2530L	SVEP1_uc010mty.2_Silent_p.L456L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2530	Sushi 19.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGGGACCTTCGAGCCGAAAGC	0.493													5	13					0	0	0.000602	0	0
SVEP1	79987	broad.mit.edu	37	9	113241924	113241924	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:113241924C>T	uc010mtz.2	-	13	2815	c.2478G>A	c.(2476-2478)CTG>CTA	p.L826L	SVEP1_uc010mua.1_Silent_p.L826L|SVEP1_uc004beu.2_Silent_p.L826L	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	826					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CCATTTTTCCCAGGGTCGTCT	0.388													68	118					0	0	0.003610	0	0
MUSK	4593	broad.mit.edu	37	9	113547100	113547100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:113547100C>T	uc004bey.2	+	11	1488	c.1390C>T	c.(1390-1392)CCA>TCA	p.P464S	MUSK_uc004bez.1_Missense_Mutation_p.P44S	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	464	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TACAGCATTCCCACCAATGAC	0.348													20	28					0	0	0.001216	0	0
OR2K2	26248	broad.mit.edu	37	9	114090518	114090518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:114090518G>A	uc011lwp.1	-	1	196	c.196C>T	c.(196-198)CTC>TTC	p.L66F		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	95	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATGAAAGAGAGATTTCCAAGG	0.413													18	17					0	0	0.007413	0	0
ZNF483	158399	broad.mit.edu	37	9	114304365	114304365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:114304365C>T	uc004bff.2	+	6	1374	c.1150C>T	c.(1150-1152)CAT>TAT	p.H384Y	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	384					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						TCAGAAGATTCATTTGGGGGA	0.423													28	51					0	0	0.001512	0	0
KIAA1958	158405	broad.mit.edu	37	9	115336479	115336479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:115336479C>T	uc004bgf.1	+	2	294	c.119C>T	c.(118-120)TCC>TTC	p.S40F	KIAA1958_uc011lwx.1_Missense_Mutation_p.S40F	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	40										skin(1)	1						TCTGAAGGTTCCCATGGGAAC	0.517													11	19					0	0	0.001368	0	0
SLC46A2	57864	broad.mit.edu	37	9	115652848	115652848	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:115652848C>T	uc004bgk.2	-	1	346	c.114G>A	c.(112-114)GCG>GCA	p.A38A		NM_033051	NP_149040	Q9BY10	TSCOT_HUMAN	solute carrier family 46, member 2	38	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	symporter activity			central_nervous_system(1)	1						GGAGTAGCCCCGCATCGTAGA	0.687													18	34					0	0	0.001882	0	0
ZFP37	7539	broad.mit.edu	37	9	115811738	115811738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:115811738C>T	uc004bgm.1	-	3	281	c.253G>A	c.(253-255)GAA>AAA	p.E85K	ZFP37_uc011lwz.1_Missense_Mutation_p.E100K|ZFP37_uc011lxa.1_Missense_Mutation_p.E86K	NM_003408	NP_003399	Q9Y6Q3	ZFP37_HUMAN	zinc finger protein 37 homolog	85	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCTCCTTTTTCCAACTTGGAG	0.453													5	11					0	0	0.001168	0	0
FKBP15	23307	broad.mit.edu	37	9	115931882	115931882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:115931882C>T	uc004bgs.2	-	26	3225	c.3107G>A	c.(3106-3108)AGA>AAA	p.R1036K	FKBP15_uc004bgr.2_Missense_Mutation_p.R473K|FKBP15_uc011lxc.1_Missense_Mutation_p.R617K|FKBP15_uc011lxd.1_Missense_Mutation_p.R968K	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	1036					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						CCCTAGAACTCTGTGGGATGG	0.552													15	23					0	0	0.003163	0	0
RGS3	5998	broad.mit.edu	37	9	116269610	116269610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:116269610C>T	uc004bhq.2	+	14	1338	c.1129C>T	c.(1129-1131)CCC>TCC	p.P377S	RGS3_uc004bhr.2_Missense_Mutation_p.P265S|RGS3_uc004bhs.2_Missense_Mutation_p.P267S|RGS3_uc004bht.2_Missense_Mutation_p.P96S|RGS3_uc010muy.2_Missense_Mutation_p.P96S|RGS3_uc004bhu.2_Missense_Mutation_p.P3S	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	377					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						GCGCATGGTCCCCCAGGTCAA	0.617													9	26					0	0	0.006214	0	0
ZNF618	114991	broad.mit.edu	37	9	116812253	116812253	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:116812253C>T	uc004bid.2	+	15	2770	c.2671C>T	c.(2671-2673)CAG>TAG	p.Q891*	ZNF618_uc004bic.2_Nonsense_Mutation_p.Q798*|ZNF618_uc011lxi.1_Nonsense_Mutation_p.Q858*|ZNF618_uc011lxj.1_Nonsense_Mutation_p.Q859*|ZNF618_uc010mvb.2_Nonsense_Mutation_p.Q481*	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	891					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGATCTCTTCCAGTACTGGTC	0.577													26	33					0	0	0.003954	0	0
COL27A1	85301	broad.mit.edu	37	9	117062944	117062944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:117062944C>T	uc011lxl.1	+	51	4678	c.4678C>T	c.(4678-4680)CCT>TCT	p.P1560S	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1560	Collagen-like 15.|Pro-rich.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CATCCAGGGCCCTCGGGGGCC	0.622													6	12					0	0	0.003080	0	0
TNFSF15	9966	broad.mit.edu	37	9	117552732	117552732	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:117552732C>T	uc004bjh.2	-	4	872	c.756G>A	c.(754-756)TAG>TAA	p.*252*	TNFSF15_uc004bjg.2_Silent_p.*193*	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	252					activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						TGCTCTCCTCCTATAGTAAGA	0.413													23	38					0	0	0.002780	0	0
TNC	3371	broad.mit.edu	37	9	117838849	117838849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:117838849C>T	uc004bjj.3	-	8	3042	c.2680G>A	c.(2680-2682)GAT>AAT	p.D894N	TNC_uc010mvf.2_Missense_Mutation_p.D894N	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	894	Fibronectin type-III 4.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CTGGGAGCATCGAGGCCTGTT	0.453													52	84					0	0	0.003610	0	0
PAPPA	5069	broad.mit.edu	37	9	118997498	118997498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:118997498C>T	uc004bjn.2	+	7	2695	c.2314C>T	c.(2314-2316)CCT>TCT	p.P772S	PAPPA_uc011lxp.1_Missense_Mutation_p.P467S|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	772					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACACACGGTTCCTCCAGCCTG	0.562													26	29					0	0	0.003330	0	0
TLR4	7099	broad.mit.edu	37	9	120475859	120475859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:120475859G>A	uc004bjz.2	+	3	1744	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	TLR4_uc004bka.2_Missense_Mutation_p.E445K|TLR4_uc004bkb.2_Missense_Mutation_p.E285K	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	485	LRR 15.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TTCTTTCCAGGAAAACTTCCT	0.448													22	34					0	0	0.001523	0	0
DBC1	1620	broad.mit.edu	37	9	121929812	121929812	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:121929812G>A	uc004bkc.2	-	8	2292	c.1836C>T	c.(1834-1836)TTC>TTT	p.F612F		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	612					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GGACCGTCTCGAAAAATGTTT	0.552													24	84					0	0	0.003330	0	0
DBC1	1620	broad.mit.edu	37	9	122011339	122011339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:122011339C>T	uc004bkc.2	-	3	764	c.308G>A	c.(307-309)AGG>AAG	p.R103K	DBC1_uc004bkd.2_Missense_Mutation_p.R103K	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	103	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCGGATGCTCCTTTGAAACTC	0.567													10	40					0	0	0.000673	0	0
PHF19	26147	broad.mit.edu	37	9	123620471	123620471	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:123620471G>A	uc004bks.1	-	15	1747	c.1494C>T	c.(1492-1494)TGC>TGT	p.C498C	PHF19_uc011lyf.1_Silent_p.C289C|PHF19_uc004bkr.2_RNA	NM_015651	NP_056466	Q5T6S3	PHF19_HUMAN	PHD finger protein 19 isoform a	498					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|breast(1)	2						TGTCCGAGGGGCAGCGTCCAT	0.607													14	29					0	0	0.001855	0	0
STOM	2040	broad.mit.edu	37	9	124110310	124110310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:124110310G>A	uc004blh.2	-	6	723	c.643C>T	c.(643-645)CGC>TGC	p.R215C	STOM_uc011lyk.1_Missense_Mutation_p.R164C|STOM_uc004bli.2_Intron	NM_004099	NP_004090	P27105	STOM_HUMAN	stomatin isoform a	215	Cytoplasmic (Potential).				protein homooligomerization	cytoskeleton|integral to plasma membrane|melanosome|membrane raft	protein binding				0				OV - Ovarian serous cystadenocarcinoma(323;0.00107)|GBM - Glioblastoma multiforme(294;0.0137)		CGGGCCTCGCGGGACGCTTCT	0.383													20	75					0	0	0.001882	0	0
OR1J1	347168	broad.mit.edu	37	9	125239572	125239572	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125239572G>A	uc011lyu.1	-	1	634	c.634C>T	c.(634-636)CTG>TTG	p.L212L	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AGGATGCACAGGAATGGAAGC	0.502													22	39					0	0	0.006320	0	0
OR1J1	347168	broad.mit.edu	37	9	125240166	125240167	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125240166_125240167GG>AA	uc011lyu.1	-	1	39_40	c.39_40CC>TT	c.(37-42)CTCCTC>CTTTTC	p.L14F	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AGGCCCAGGAGGAGGAACTCGG	0.55													40	50					0	0	0.004672	0	0
OR1J2	26740	broad.mit.edu	37	9	125273186	125273186	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125273186C>T	uc004bmj.1	+	4	961	c.106C>T	c.(106-108)CTG>TTG	p.L36L	OR1J2_uc011lyv.1_Silent_p.L36L	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						GGGCATGTACCTGACCACGGT	0.597													31	106					0	0	0.002096	0	0
OR1N2	138882	broad.mit.edu	37	9	125315494	125315494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125315494G>A	uc011lyx.1	+	1	46	c.46G>A	c.(46-48)GGA>AGA	p.G16R		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						ACAAGGGATGGGAAAACCAGG	0.378													25	51					0	0	0.005443	0	0
OR1N2	138882	broad.mit.edu	37	9	125316188	125316188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125316188C>T	uc011lyx.1	+	1	740	c.740C>T	c.(739-741)TCT>TTT	p.S247F		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	247	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GTCATCTCATCTCCTGGAGGG	0.502													38	79					0	0	0.002852	0	0
OR1L8	138881	broad.mit.edu	37	9	125330481	125330481	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125330481G>A	uc004bmp.1	-	1	276	c.276C>T	c.(274-276)ACC>ACT	p.T92T		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CATAGGAGATGGTCTTCTTTT	0.453													26	47					0	0	0.006320	0	0
OR1L6	392390	broad.mit.edu	37	9	125512429	125512429	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125512429G>A	uc011lzc.1	+	1	411	c.411G>A	c.(409-411)CAG>CAA	p.Q137Q		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	137	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCTGGCCCAGATGTACTTCT	0.488													21	71					0	0	0.003330	0	0
OR5C1	392391	broad.mit.edu	37	9	125551739	125551739	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:125551739G>A	uc011lzd.1	+	1	528	c.528G>A	c.(526-528)CGG>CGA	p.R176R		NM_001001923	NP_001001923	Q8NGR4	OR5C1_HUMAN	olfactory receptor, family 5, subfamily C,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCCGCTCCCGGAAGATCAATA	0.567													13	24					0	0	0.002450	0	0
CRB2	286204	broad.mit.edu	37	9	126132826	126132826	+	Nonsense_Mutation	SNP	G	A	A	rs144803819	byFrequency	TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:126132826G>A	uc004bnx.1	+	7	1586	c.1494G>A	c.(1492-1494)TGG>TGA	p.W498*	CRB2_uc004bnw.1_Nonsense_Mutation_p.W498*	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	498	Extracellular (Potential).|Laminin G-like 1.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CCACACTCTGGAGCTACAGCA	0.602													25	20					0	0	0.002096	0	0
CRB2	286204	broad.mit.edu	37	9	126133596	126133596	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:126133596C>T	uc004bnx.1	+	8	2267	c.2175C>T	c.(2173-2175)CTC>CTT	p.L725L	CRB2_uc004bnw.1_Silent_p.L725L	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	725	Extracellular (Potential).|Laminin G-like 2.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						ATGATGGGCTCCGTCACCTGG	0.667													28	81					0	0	0.001512	0	0
DENND1A	57706	broad.mit.edu	37	9	126531808	126531808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:126531808G>A	uc004bnz.1	-	4	400	c.167C>T	c.(166-168)CCC>CTC	p.P56L	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Missense_Mutation_p.P24L|DENND1A_uc004boa.1_Missense_Mutation_p.P56L|DENND1A_uc004bob.1_Missense_Mutation_p.P26L|DENND1A_uc004boc.2_Intron	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	56	UDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CACATAGAAGGGGAAACAAAA	0.333													23	83					0	0	0.001786	0	0
PSMB7	5695	broad.mit.edu	37	9	127119142	127119142	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127119142T>C	uc004boj.2	-	7	640	c.623A>G	c.(622-624)AAC>AGC	p.N208S	PSMB7_uc010mwm.2_3'UTR|LOC100129034_uc010mwl.2_RNA	NM_002799	NP_002790	Q99436	PSB7_HUMAN	proteasome beta 7 subunit proprotein	208					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0						GCCCAGGTCGTTGAAGATGCC	0.557													15	36					0	0	0.004990	0	0
NR5A1	2516	broad.mit.edu	37	9	127262369	127262369	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127262369C>A	uc004boo.1	-	4	1057	c.870G>T	c.(868-870)GAG>GAT	p.E290D		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	290	Important for dimerization.|Ligand-binding.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						AGAGACTCACCTCCAGCTCCT	0.642													12	34					2.31682e-05	3.34452e-05	0.003163	1	0
NR6A1	2649	broad.mit.edu	37	9	127298174	127298175	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127298174_127298175GG>AA	uc004bor.1	-	7	1239_1240	c.1061_1062CC>TT	c.(1060-1062)TCC>TTT	p.S354F	NR6A1_uc004boq.1_Missense_Mutation_p.S349F|NR6A1_uc010mwq.1_Missense_Mutation_p.S350F	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	354					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						GTTCTTCATCGGAGGGCGAGTA	0.53													31	100					0	0	0.004672	0	0
NR6A1	2649	broad.mit.edu	37	9	127300562	127300562	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127300562C>T	uc004bor.1	-	6	811	c.633G>A	c.(631-633)AGG>AGA	p.R211R	NR6A1_uc004boq.1_Silent_p.R206R|NR6A1_uc010mwq.1_Silent_p.R207R	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	211	Sufficient for interaction with UIMC1 (By similarity).				cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TGTACTGTTCCCTGAAGGCCA	0.468													55	40					0	0	0.003610	0	0
NR6A1	2649	broad.mit.edu	37	9	127316621	127316621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127316621C>T	uc004bor.1	-	3	549	c.371G>A	c.(370-372)GGG>GAG	p.G124E	NR6A1_uc004boq.1_Missense_Mutation_p.G120E|NR6A1_uc010mwq.1_Missense_Mutation_p.G120E	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	124	Nuclear receptor.				cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CCGGTTCATCCCCATCTGGAG	0.493													25	73					0	0	0.005443	0	0
OLFML2A	169611	broad.mit.edu	37	9	127561572	127561573	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127561572_127561573GG>AA	uc004bov.2	+	4	584_585	c.471_472GG>AA	c.(469-474)AAGGCC>AAAACC	p.A158T	OLFML2A_uc010mwr.1_Missense_Mutation_p.A122T|OLFML2A_uc004bow.2_5'Flank	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	158	Potential.										0						AGAGCATCAAGGCCAACCTGAG	0.584													19	22					0	0	0.004672	0	0
RABEPK	10244	broad.mit.edu	37	9	127975692	127975692	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:127975692C>T	uc004bpi.2	+	5	428	c.255C>T	c.(253-255)CCC>CCT	p.P85P	RABEPK_uc004bph.1_Silent_p.P85P|RABEPK_uc004bpj.2_Intron|RABEPK_uc004bpk.2_Silent_p.P85P|RABEPK_uc004bpl.1_Intron|RABEPK_uc004bpm.2_Silent_p.P85P	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	85	Kelch 1.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						GCCTCTTGCCCCGGTATGAAC	0.478													25	71					0	0	0.003954	0	0
DNM1	1759	broad.mit.edu	37	9	130981516	130981516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:130981516G>A	uc011mau.1	+	4	661	c.574G>A	c.(574-576)GAG>AAG	p.E192K	DNM1_uc010mxr.2_Missense_Mutation_p.E192K|DNM1_uc011mat.1_Missense_Mutation_p.E192K	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	192					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GGTCGCCAAGGAGGTGGACCC	0.483													21	43					0	0	0.001882	0	0
ODF2	4957	broad.mit.edu	37	9	131254717	131254717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:131254717C>T	uc011mbd.1	+	15	1860	c.1549C>T	c.(1549-1551)CCA>TCA	p.P517S	ODF2_uc011maz.1_Missense_Mutation_p.P517S|ODF2_uc011mbb.1_Missense_Mutation_p.P451S|ODF2_uc011mbc.1_Missense_Mutation_p.P436S|ODF2_uc004bva.2_Missense_Mutation_p.P470S|ODF2_uc004bvb.2_Missense_Mutation_p.P493S|ODF2_uc011mbe.1_Missense_Mutation_p.P512S|ODF2_uc004bvc.2_Missense_Mutation_p.P493S|ODF2_uc011mbf.1_Missense_Mutation_p.P498S|ODF2_uc004bvd.3_Missense_Mutation_p.P517S|ODF2_uc004bve.2_Missense_Mutation_p.P498S	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	517	Potential.				cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						CAGCTTTGCTCCAATGGAGGA	0.507													15	36					0	0	0.006122	0	0
PKN3	29941	broad.mit.edu	37	9	131476941	131476941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:131476941C>T	uc004bvw.2	+	12	1975	c.1582C>T	c.(1582-1584)CCG>TCG	p.P528S	PKN3_uc010myh.2_Missense_Mutation_p.P528S|PKN3_uc011mbk.1_Missense_Mutation_p.P78S	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	528	Pro-rich.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CGAGGAGACTCCGGTGAGGGG	0.642													3	9					0	0	0.004672	0	0
FAM73B	84895	broad.mit.edu	37	9	131830564	131830564	+	Missense_Mutation	SNP	C	T	T	rs34832472		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:131830564C>T	uc004bxa.2	+	13	1543	c.1357C>T	c.(1357-1359)CTC>TTC	p.L453F	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_RNA|FAM73B_uc011mbn.1_Missense_Mutation_p.L453F|FAM73B_uc004bxb.2_5'Flank	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	453						integral to membrane				skin(1)	1						GGCCTCGGTGCTCGCCGTCCT	0.612													14	41					0	0	0.001855	0	0
PPP2R4	5524	broad.mit.edu	37	9	131891299	131891299	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:131891299G>A	uc004bxm.1	+	5	624	c.357G>A	c.(355-357)CTG>CTA	p.L119L	PPP2R4_uc004bxl.1_Silent_p.L84L|PPP2R4_uc011mbo.1_Silent_p.L119L|PPP2R4_uc010myr.1_Intron|PPP2R4_uc004bxn.1_Silent_p.L84L|PPP2R4_uc004bxo.1_Intron|PPP2R4_uc011mbp.1_Silent_p.L55L|PPP2R4_uc011mbq.1_Intron|PPP2R4_uc010mys.1_Silent_p.L49L	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	119					ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		TCAACACGCTGGACAGGTGGA	0.542													11	30					0	0	0.000978	0	0
NUP214	8021	broad.mit.edu	37	9	134073810	134073810	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:134073810C>T	uc004cag.2	+	29	5040	c.4929C>T	c.(4927-4929)TCC>TCT	p.S1643S	NUP214_uc004cah.2_Silent_p.S1633S|NUP214_uc004cai.2_Silent_p.S1073S|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Silent_p.S469S|NUP214_uc011mcf.1_Silent_p.S420S|NUP214_uc010mzh.1_Silent_p.S157S|NUP214_uc010mzi.1_Silent_p.S157S	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1643	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CTGGCTCATCCGTCTTTGCTC	0.577			T	DEK|SET|ABL1	AML|T-ALL								25	84					0	0	0.005443	0	0
BAT2L1	84726	broad.mit.edu	37	9	134321978	134321978	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:134321978C>T	uc004can.3	+	6	859	c.804C>T	c.(802-804)TTC>TTT	p.F268F	BAT2L1_uc010mzj.1_5'Flank|BAT2L1_uc004cam.1_Silent_p.F268F	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	268							protein binding				0						CTTCACAGTTCATGGGAAATG	0.522													21	18					0	0	0.001523	0	0
BAT2L1	84726	broad.mit.edu	37	9	134366870	134366870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:134366870C>T	uc004can.3	+	28	6339	c.6284C>T	c.(6283-6285)TCT>TTT	p.S2095F	BAT2L1_uc004cao.3_Missense_Mutation_p.S1452F|BAT2L1_uc004cap.3_Missense_Mutation_p.S241F|BAT2L1_uc011mch.1_Missense_Mutation_p.S18F	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	2095							protein binding				0						CTGCCCCAGTCTATTCAGCTG	0.642													18	44					0	0	0.006122	0	0
C9orf98	158067	broad.mit.edu	37	9	135702305	135702305	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:135702305G>A	uc004cbu.1	-	8	1249	c.693C>T	c.(691-693)CCC>CCT	p.P231P	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Silent_p.P27P	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	231						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TGGGGTAGGAGGGAATGACCC	0.537													42	116					0	0	0.003214	0	0
RALGDS	5900	broad.mit.edu	37	9	135985089	135985090	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:135985089_135985090GG>AA	uc004cco.2	-	4	527_528	c.507_508CC>TT	c.(505-510)GCCCTC>GCTTTC	p.L170F	RALGDS_uc004ccp.2_Intron|RALGDS_uc004ccq.2_Intron|RALGDS_uc004ccr.2_Missense_Mutation_p.L169F|RALGDS_uc011mcv.1_Intron|RALGDS_uc004ccs.2_Missense_Mutation_p.L115F|RALGDS_uc011mcw.1_Missense_Mutation_p.L241F|RALGDS_uc004ccv.1_5'Flank|RALGDS_uc004ccu.1_5'Flank	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	170	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GAGGCCGTGAGGGCGTCACATc	0.307			T	CIITA	PMBL|Hodgkin Lymphona|								15	43					0	0	0.004672	0	0
TMEM8C	389827	broad.mit.edu	37	9	136389876	136389876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:136389876G>A	uc011mdk.1	-	1	91	c.91C>T	c.(91-93)CAC>TAC	p.H31Y		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	31						integral to membrane					0						GCCTCCATGTGGAACCGCCTC	0.652													11	38					0	0	0.000978	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136405855	136405855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:136405855G>A	uc011mdl.1	+	6	1105	c.548G>A	c.(547-549)GGA>GAA	p.G183E	ADAMTSL2_uc004cei.2_Missense_Mutation_p.G183E	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	183					negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		TGCGTGTCTGGAAAATGTGAG	0.647													18	30					0	0	0.001216	0	0
COL5A1	1289	broad.mit.edu	37	9	137582856	137582856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:137582856G>A	uc004cfe.2	+	2	590	c.208G>A	c.(208-210)GGC>AGC	p.G70S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	70	TSP N-terminal.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		ATCTTCCAAAGGCCCGGATGT	0.552													12	40					0	0	0.000978	0	0
COL5A1	1289	broad.mit.edu	37	9	137707430	137707431	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:137707430_137707431GG>AA	uc004cfe.2	+	51	4405_4406	c.4023_4024GG>AA	c.(4021-4026)GTGGGT>GTAAGT	p.G1342S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1342	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGGCCCAGTGGGTTTTCCTGG	0.619													5	10					0	0	0.004672	0	0
KCNT1	57582	broad.mit.edu	37	9	138670594	138670594	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:138670594G>A	uc011mdq.1	+	23	2729	c.2655G>A	c.(2653-2655)AAG>AAA	p.K885K	KCNT1_uc011mdr.1_Silent_p.K712K|KCNT1_uc010nbf.2_Silent_p.K840K|KCNT1_uc004cgo.1_Silent_p.K634K	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	885						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TGGTGGACAAGGAGAGCACCA	0.652													11	33					0	0	0.000673	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138714513	138714513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:138714513G>A	uc004cgr.3	-	11	1994	c.1994C>T	c.(1993-1995)ACC>ATC	p.T665I	CAMSAP1_uc004cgq.3_Missense_Mutation_p.T555I|CAMSAP1_uc010nbg.2_Missense_Mutation_p.T387I	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	665						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		TCCTGTCTCGGTGGGGTCGAT	0.582													18	13					0	0	0.004990	0	0
GPSM1	26086	broad.mit.edu	37	9	139250996	139250996	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:139250996G>A	uc004chd.2	+	13	2035	c.1815G>A	c.(1813-1815)AAG>AAA	p.K605K	GPSM1_uc011mdu.1_Silent_p.K96K|GPSM1_uc004che.2_Silent_p.K96K	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	605	GoLoco 3.				cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		TGCTCATCAAGTACCAGGTGG	0.682													5	13					0	0	0.001168	0	0
C9orf86	55684	broad.mit.edu	37	9	139733691	139733691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:139733691C>T	uc004cji.1	+	12	1779	c.1511C>T	c.(1510-1512)TCG>TTG	p.S504L	C9orf86_uc004cjj.1_Missense_Mutation_p.S505L|C9orf86_uc004cjk.1_Intron|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_Intron|C9orf86_uc010nbs.1_Missense_Mutation_p.S389L|C9orf86_uc004cjn.1_Missense_Mutation_p.S298L	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	504					small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		ATACCAGCTTCGAAGCCACGG	0.672													6	4					0	0	0.001168	0	0
C9orf172	389813	broad.mit.edu	37	9	139741099	139741099	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:139741099C>T	uc011meh.1	+	1	2233	c.2233C>T	c.(2233-2235)CTG>TTG	p.L745L	PHPT1_uc004cjp.2_5'Flank|PHPT1_uc011mei.1_5'Flank|PHPT1_uc004cjq.3_5'Flank	NM_001080482	NP_001073951	C9J069	CI172_HUMAN	chromosome 9 open reading frame 172	745											0						TGTCGGCTTCCTGTCGCGCGG	0.701													4	8					0	0	0.000248	0	0
TRAF2	7186	broad.mit.edu	37	9	139820209	139820209	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:139820209C>T	uc010nbu.2	+	12	1535	c.1362C>T	c.(1360-1362)TCC>TCT	p.S454S	TRAF2_uc004cjv.2_Silent_p.S454S|TRAF2_uc011mek.1_Silent_p.S443S|TRAF2_uc010nbw.2_Silent_p.S429S	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	454	MATH.				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		TGACTTCATCCTCTTTTCAGA	0.587													22	35					0	0	0.004656	0	0
PNPLA7	375775	broad.mit.edu	37	9	140392681	140392681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:140392681G>A	uc004cnf.2	-	16	2036	c.1699C>T	c.(1699-1701)CCG>TCG	p.P567S	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Missense_Mutation_p.P592S	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	567	cNMP 2.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		ACGACGGTCGGCTGCTTCCGC	0.647													32	16					0	0	0.003271	0	0
CACNA1B	774	broad.mit.edu	37	9	140809148	140809148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr9:140809148C>T	uc004cog.2	+	5	810	c.665C>T	c.(664-666)CCA>CTA	p.P222L		NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	222	Cytoplasmic (Potential).|I.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GCCATGGTTCCACTCCTGCAG	0.547													6	21					0	0	0.001984	0	0
ASMTL	8623	broad.mit.edu	37	X	1551204	1551204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:1551204G>A	uc004cpx.1	-	6	578	c.467C>T	c.(466-468)TCC>TTC	p.S156F	ASMTL_uc011mhe.1_Missense_Mutation_p.S80F|ASMTL_uc004cpy.1_Missense_Mutation_p.S140F|ASMTL_uc011mhf.1_Missense_Mutation_p.S98F	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	156	MAF-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CAGCTCCTCGGACAGCTCCGA	0.637													14	3					0	0	0.004007	0	0
MXRA5	25878	broad.mit.edu	37	X	3229399	3229399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:3229399C>T	uc004crg.3	-	7	7002	c.6845G>A	c.(6844-6846)GGG>GAG	p.G2282E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2282	Ig-like C2-type 7.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACCAGACTCCCGTCTGGGAG	0.567													28	27					0	0	0.005443	0	0
MXRA5	25878	broad.mit.edu	37	X	3235716	3235716	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:3235716G>A	uc004crg.3	-	6	6163	c.6006C>T	c.(6004-6006)ATC>ATT	p.I2002I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2002	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CGTGCAGGGTGATGCGGCCCT	0.612													10	19					0	0	0.001368	0	0
MXRA5	25878	broad.mit.edu	37	X	3241058	3241058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:3241058C>T	uc004crg.3	-	5	2825	c.2668G>A	c.(2668-2670)GAC>AAC	p.D890N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	890						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCGGAAAGGTCATCAACAACT	0.473													46	6					0	0	0.003610	0	0
STS	412	broad.mit.edu	37	X	7177712	7177712	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:7177712G>A	uc004cry.3	+	5	965	c.720G>A	c.(718-720)CTG>CTA	p.L240L		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	240	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	TCCGGCCCCTGAACTGCTTCA	0.527									Ichthyosis				29	26					0	0	0.005443	0	0
FRMPD4	9758	broad.mit.edu	37	X	12735780	12735781	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:12735780_12735781CC>TT	uc004cuz.1	+	16	3341_3342	c.2835_2836CC>TT	c.(2833-2838)CCCCTT>CCTTTT	p.L946F	FRMPD4_uc011mij.1_Missense_Mutation_p.L938F	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	946					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GCTACCACCCCCTTGCAGAAGA	0.584													33	67					0	0	0.004672	0	0
BMX	660	broad.mit.edu	37	X	15534347	15534347	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:15534347G>A	uc004cww.2	+	5	626	c.438G>A	c.(436-438)TGG>TGA	p.W146*	BMX_uc004cwx.3_Nonsense_Mutation_p.W146*|BMX_uc004cwy.3_Nonsense_Mutation_p.W146*	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	146	Btk-type.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					GTACCCTCTGGGAAGCATGTA	0.537													71	14					0	0	0.003610	0	0
SYAP1	94056	broad.mit.edu	37	X	16775304	16775304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:16775304C>T	uc004cxp.2	+	8	896	c.803C>T	c.(802-804)ACT>ATT	p.T268I	SYAP1_uc004cxo.2_Missense_Mutation_p.T268I|SYAP1_uc011miv.1_Missense_Mutation_p.T234I	NM_032796	NP_116185	Q96A49	SYAP1_HUMAN	SYAP1 protein	268										skin(1)	1	Hepatocellular(33;0.0997)					GAAATTTCTACTAGCCCAGGT	0.393													85	15					0	0	0.003610	0	0
NHS	4810	broad.mit.edu	37	X	17744272	17744272	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:17744272C>T	uc004cxx.2	+	6	2321	c.1983C>T	c.(1981-1983)TTC>TTT	p.F661F	NHS_uc011mix.1_Silent_p.F682F|NHS_uc004cxy.2_Silent_p.F505F|NHS_uc004cxz.2_Silent_p.F484F|NHS_uc004cya.2_Silent_p.F384F	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	661						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CCAGTGTTTTCGTGACAGAGC	0.512													96	11					0	0	0.003610	0	0
PPEF1	5475	broad.mit.edu	37	X	18822164	18822164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:18822164C>T	uc004cyq.2	+	14	1701	c.1220C>T	c.(1219-1221)CCC>CTC	p.P407L	PPEF1_uc004cyp.2_Missense_Mutation_p.P379L|PPEF1_uc004cyr.2_Intron|PPEF1_uc004cys.2_Missense_Mutation_p.P407L|PPEF1_uc011mja.1_Missense_Mutation_p.P342L|PPEF1_uc011mjb.1_Missense_Mutation_p.P351L	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	407	Catalytic.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					GAATGTAAGCCCGAAGGGTAT	0.433													20	19					0	0	0.001882	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627398	21627398	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:21627398G>A	uc004czx.1	+	20	2391	c.2355G>A	c.(2353-2355)CAG>CAA	p.Q785Q	CNKSR2_uc004czw.2_Silent_p.Q785Q|CNKSR2_uc011mjn.1_Silent_p.Q736Q|CNKSR2_uc011mjo.1_Silent_p.Q755Q|CNKSR2_uc004czy.2_Silent_p.Q377Q	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	785					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ACTATCTTCAGACTCTGCCCC	0.572													53	10					0	0	0.003610	0	0
SMPX	23676	broad.mit.edu	37	X	21761934	21761934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:21761934C>T	uc004daa.2	-	3	249	c.66G>A	c.(64-66)ATG>ATA	p.M22I		NM_014332	NP_055147	Q9UHP9	SMPX_HUMAN	small muscle protein, X-linked	22					striated muscle contraction						0						GAAAGGCTCCCATTGGAATAT	0.428													34	48					0	0	0.006230	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766245	27766245	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:27766245C>T	uc011mjy.1	+	1	1320	c.1233C>T	c.(1231-1233)TTC>TTT	p.F411F		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						TCAAGAAATTCACTCCTCATC	0.428													14	19					0	0	0.002450	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27998981	27998981	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:27998981G>A	uc004dbx.1	-	1	586	c.471C>T	c.(469-471)GTC>GTT	p.V157V		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	157										ovary(3)|skin(1)	4						GAGCAGTAAGGACTTGCCAGC	0.562													13	2					0	0	0.001855	0	0
CXorf21	80231	broad.mit.edu	37	X	30578126	30578126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:30578126G>A	uc004dcg.1	-	3	623	c.347C>T	c.(346-348)TCT>TTT	p.S116F		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	116										ovary(1)	1						ACTTTTGCAAGAAGATGGAAC	0.443													40	43					0	0	0.006999	0	0
GK	2710	broad.mit.edu	37	X	30736685	30736685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:30736685C>T	uc004dch.3	+	14	1185	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	GK_uc010ngj.2_Missense_Mutation_p.R330C|GK_uc004dci.3_Missense_Mutation_p.R330C|GK_uc011mjz.1_Missense_Mutation_p.R131C|GK_uc011mka.1_Missense_Mutation_p.R173C|GK_uc010ngk.2_Missense_Mutation_p.R125C	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	336					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						TGCTGTTATTCGCTGGCTAAG	0.333													4	11					0	0	0.001984	0	0
FAM47A	158724	broad.mit.edu	37	X	34148669	34148669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:34148669C>T	uc004ddg.2	-	1	1760	c.1727G>A	c.(1726-1728)CGA>CAA	p.R576Q		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	576										ovary(4)|central_nervous_system(1)	5						GTAGGATGCTCGAATCTTGGG	0.512													34	4					0	0	0.003271	0	0
FAM47A	158724	broad.mit.edu	37	X	34150306	34150306	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:34150306G>A	uc004ddg.2	-	1	123	c.90C>T	c.(88-90)TTC>TTT	p.F30F		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	30										ovary(4)|central_nervous_system(1)	5						TGCACTTCGCGAAGCACTTGG	0.617													46	7					0	0	0.003610	0	0
FAM47B	170062	broad.mit.edu	37	X	34961077	34961077	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:34961077G>A	uc004ddi.1	+	1	147	c.129G>A	c.(127-129)GTG>GTA	p.V43V		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	43										ovary(3)|breast(1)	4						TCCCGCCTGTGGACACCCAGA	0.572													20	3					0	0	0.002299	0	0
FAM47B	170062	broad.mit.edu	37	X	34962641	34962641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:34962641G>A	uc004ddi.1	+	1	1711	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	565										ovary(3)|breast(1)	4						AAGAAGTGATGAACCTTTGAT	0.478													35	61					0	0	0.004289	0	0
CXorf22	170063	broad.mit.edu	37	X	36007618	36007618	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:36007618G>T	uc004ddj.2	+	16	2955	c.2896G>T	c.(2896-2898)GGG>TGG	p.G966W	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	966										large_intestine(1)|lung(1)|ovary(1)	3						TGAATTTGTTGGGTATACACT	0.333													8	20					3.09899e-07	4.48711e-07	0.004482	1	0
FAM47C	442444	broad.mit.edu	37	X	37026576	37026576	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:37026576G>A	uc004ddl.1	+	1	107	c.93G>A	c.(91-93)GCG>GCA	p.A31A		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	31										ovary(3)	3						AGTACTTCGCGAAGCGCAAGC	0.642													5	16					0	0	0.000602	0	0
CYBB	1536	broad.mit.edu	37	X	37651306	37651306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:37651306C>T	uc004ddr.2	+	4	392	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Missense_Mutation_p.H79Y|CYBB_uc011mkg.1_5'UTR	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	111	Ferric oxidoreductase.|Helical; (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GATTGCACTTCACTCTGGTAA	0.378													9	22					0	0	0.004482	0	0
SYN1	6853	broad.mit.edu	37	X	47466349	47466349	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:47466349G>A	uc004die.2	-	3	651	c.522C>T	c.(520-522)GTC>GTT	p.V174V	SYN1_uc004did.2_Silent_p.V174V	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	174	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						CTCACCGCACGACCTTCACCC	0.507													13	2					0	0	0.004007	0	0
ZNF81	347344	broad.mit.edu	37	X	47774358	47774358	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:47774358A>G	uc010nhy.1	+	6	681	c.313A>G	c.(313-315)ATT>GTT	p.I105V		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	105						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				CCAGAGGAGAATTTCTGGGAA	0.348													22	4					0	0	0.003954	0	0
ZNF630	57232	broad.mit.edu	37	X	47918760	47918761	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:47918760_47918761GG>AA	uc004div.3	-	5	1322_1323	c.1070_1071CC>TT	c.(1069-1071)TCC>TTT	p.S357F	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Missense_Mutation_p.S233F	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	357	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						GTGACTTCTGGGAGAAAGCTTT	0.436													16	11					0	0	0.004672	0	0
FTSJ1	24140	broad.mit.edu	37	X	48336904	48336904	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:48336904C>T	uc004djo.1	+	3	512	c.189C>T	c.(187-189)ATC>ATT	p.I63I	FTSJ1_uc004djl.2_Silent_p.I63I|FTSJ1_uc004djm.2_Silent_p.I63I|FTSJ1_uc004djn.1_Silent_p.I63I|FTSJ1_uc004djp.1_Silent_p.I63I|FTSJ1_uc011mlw.1_Intron	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	63					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						GCCAGAAGATCGGGTAAGTGT	0.632													15	1					0	0	0.006122	0	0
HDAC6	10013	broad.mit.edu	37	X	48681693	48681693	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:48681693C>T	uc011mmi.1	+	25	2979	c.2884C>T	c.(2884-2886)CTG>TTG	p.L962L	HDAC6_uc004dks.1_Silent_p.L962L|HDAC6_uc010nig.1_Silent_p.L810L|HDAC6_uc004dkt.1_Silent_p.L962L|HDAC6_uc011mmk.1_Silent_p.L943L|HDAC6_uc004dkv.1_Silent_p.L610L|HDAC6_uc004dkw.1_Silent_p.L610L|HDAC6_uc004dkx.1_Silent_p.L325L	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	962					aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	AGGAGCCATTCTGGACCAGAC	0.642													7	6					0	0	0.004482	0	0
TFE3	7030	broad.mit.edu	37	X	48896849	48896849	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:48896849A>C	uc004dmb.3	-	3	555	c.317T>G	c.(316-318)ATG>AGG	p.M106R	TFE3_uc004dmc.3_Missense_Mutation_p.M1R|TFE3_uc004dme.1_RNA	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	106					humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						AGATGACGACATGGCAGGGGT	0.637			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								9	2					0	0	0.004482	0	0
CACNA1F	778	broad.mit.edu	37	X	49071988	49071988	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:49071988G>A	uc004dnb.2	-	28	3347	c.3285C>T	c.(3283-3285)GCC>GCT	p.A1095A	CACNA1F_uc010nip.2_Silent_p.A1084A	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1095	Dihydropyridine binding (By similarity).|III.|Extracellular (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	ATGCATCGATGGCCTTGTATA	0.527													9	2					0	0	0.000673	0	0
CCNB3	85417	broad.mit.edu	37	X	50052425	50052425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:50052425C>T	uc004dox.3	+	6	1554	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	CCNB3_uc004doy.2_Missense_Mutation_p.S419F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	419					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AAGCCATTGTCCATTAAAGAA	0.473													51	7					0	0	0.003610	0	0
DGKK	139189	broad.mit.edu	37	X	50114815	50114815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:50114815C>T	uc010njr.1	-	27	3580	c.3520G>A	c.(3520-3522)GAG>AAG	p.E1174K		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	1174					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					AGTGCAGTCTCATCCTCAGCA	0.468													11	1					0	0	0.001368	0	0
DGKK	139189	broad.mit.edu	37	X	50130633	50130633	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:50130633C>T	uc010njr.1	-	14	2097	c.2037G>A	c.(2035-2037)GTG>GTA	p.V679V		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	679					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					CAAAATCTTCCACAGCTGAAC	0.408													26	5					0	0	0.007291	0	0
BMP15	9210	broad.mit.edu	37	X	50659191	50659191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:50659191G>A	uc011mnw.1	+	2	763	c.763G>A	c.(763-765)GAG>AAG	p.E255K		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	255					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					GGGCATGGAGGAGTTCATGGA	0.463													26	5					0	0	0.003330	0	0
SSX8	280659	broad.mit.edu	37	X	52654594	52654594	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:52654594G>A	uc011moa.1	+	3		c.396G>A			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						GAAAGAGTGGGAAAAGATGAA	0.383													5	24					0	0	0.000602	0	0
SSX7	280658	broad.mit.edu	37	X	52682029	52682029	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:52682029G>A	uc004dqx.1	-	3	234	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	25	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					CAATATCATCGAAGGACTAGG	0.413													55	6					0	0	0.003610	0	0
PFKFB1	5207	broad.mit.edu	37	X	54971908	54971908	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:54971908G>A	uc004dty.1	-	10	1133	c.1062C>T	c.(1060-1062)GAC>GAT	p.D354D	PFKFB1_uc010nkd.1_Silent_p.D162D|PFKFB1_uc011mol.1_Silent_p.D289D	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	354	Fructose-2,6-bisphosphatase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						ATTTATCTTGGTCTCGCAGTG	0.478													9	18					0	0	0.000673	0	0
PFKFB1	5207	broad.mit.edu	37	X	54982606	54982606	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:54982606G>A	uc004dty.1	-	7	689	c.618C>T	c.(616-618)CCC>CCT	p.P206P	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Silent_p.P141P	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	206	6-phosphofructo-2-kinase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						cctcATCCAAGGGTTGGTAGT	0.229													17	21					0	0	0.006122	0	0
MAGEH1	28986	broad.mit.edu	37	X	55479300	55479300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:55479300C>T	uc004dum.2	+	1	763	c.493C>T	c.(493-495)CCC>TCC	p.P165S		NM_014061	NP_054780	Q9H213	MAGH1_HUMAN	melanoma antigen, family H, 1 protein	165	MAGE.				apoptosis					ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CTTCTGGGGGCCCCGAGCACA	0.507													49	7					0	0	0.003610	0	0
SPIN4	139886	broad.mit.edu	37	X	62570692	62570692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:62570692G>A	uc004dvf.2	-	1	527	c.7C>T	c.(7-9)CCT>TCT	p.P3S		NM_001012968	NP_001012986	Q56A73	SPIN4_HUMAN	spindlin family, member 4	3					gamete generation					ovary(1)|lung(1)	2						ACGGTTGGAGGAGACATAGCT	0.493													30	3					0	0	0.003271	0	0
FAM123B	139285	broad.mit.edu	37	X	63411267	63411267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:63411267G>A	uc004dvo.2	-	2	2173	c.1900C>T	c.(1900-1902)CGT>TGT	p.R634C		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	634					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						TCTCTACAACGAACCTCTCGG	0.612													23	3					0	0	0.002780	0	0
MTMR8	55613	broad.mit.edu	37	X	63563500	63563500	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:63563500G>A	uc004dvs.2	-	8	1034	c.966C>T	c.(964-966)TTC>TTT	p.F322F	MTMR8_uc011mou.1_Silent_p.F322F|MTMR8_uc004dvt.1_Silent_p.F322F	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	322	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CCTTTGTAATGAAAATTCCAG	0.284													12	0					0	0	0.003163	0	0
HEPH	9843	broad.mit.edu	37	X	65414953	65414953	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:65414953G>A	uc011moz.1	+	9	1452	c.1392G>A	c.(1390-1392)CGG>CGA	p.R464R	HEPH_uc004dwn.2_Silent_p.R464R|HEPH_uc004dwo.2_Silent_p.R194R|HEPH_uc010nkr.2_Silent_p.R464R|HEPH_uc011mpa.1_Silent_p.R464R	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	461	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CAGTGATCCGGGCTGAGGTGG	0.433													23	9					0	0	0.007291	0	0
STARD8	9754	broad.mit.edu	37	X	67937559	67937560	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:67937559_67937560GT>AA	uc004dxa.2	+	5	935_936	c.563_564GT>AA	c.(562-564)GGT>GAA	p.G188E	STARD8_uc004dxb.2_Missense_Mutation_p.G268E|STARD8_uc004dxc.3_Missense_Mutation_p.G188E	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	188			G -> S (in a breast cancer sample; somatic mutation).		regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity	p.G188S(2)		breast(3)|ovary(2)|pancreas(1)	6						ACCTCAGCCGGTGGCAGTGGTG	0.609													5	9					0	0	0.004672	0	0
DLG3	1741	broad.mit.edu	37	X	69670617	69670617	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:69670617C>T	uc004dyi.1	+	6	1297	c.969C>T	c.(967-969)CCC>CCT	p.P323P	DLG3_uc004dyj.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	323					axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					TGTACGCTCCCCCTGACTACG	0.542													10	18					0	0	0.001368	0	0
PHKA1	5255	broad.mit.edu	37	X	71830924	71830924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:71830924C>T	uc004eax.3	-	22	2781	c.2480G>A	c.(2479-2481)CGA>CAA	p.R827Q	PHKA1_uc004eay.3_Missense_Mutation_p.R827Q|PHKA1_uc011mqi.1_Missense_Mutation_p.R768Q	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	827	Calmodulin-binding (Potential).				glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					AGAAATGTATCGGATCAGGCC	0.393													18	4					0	0	0.001523	0	0
PHKA1	5255	broad.mit.edu	37	X	71915728	71915728	+	Splice_Site	SNP	T	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:71915728T>A	uc004eax.3	-	4	587	c.286_splice	c.e4-1	p.V96_splice	PHKA1_uc004eay.3_Splice_Site_p.V96_splice|PHKA1_uc011mqi.1_Splice_Site_p.V96_splice	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform						glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TTTATCCACCTGAAAAGAACA	0.358													64	8					0	0	0.003610	0	0
TSIX	9383	broad.mit.edu	37	X	73043728	73043728	+	RNA	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73043728C>T	uc004ebn.2	+	1		c.31689C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATTTTTATATCCTAGGGCATG	0.358													17	3					0	0	0.004990	0	0
XIST	7503	broad.mit.edu	37	X	73050944	73050944	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73050944G>A	uc004ebm.1	-	4		c.11739C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CTTCCTATCTGGGACCAGGAA	0.453													19	1					0	0	0.001523	0	0
XIST	7503	broad.mit.edu	37	X	73064557	73064557	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73064557G>A	uc004ebm.1	-	1		c.8032C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AACAGGCCAGGAAAATGGGCC	0.468													21	24					0	0	0.002780	0	0
ZCCHC13	389874	broad.mit.edu	37	X	73524122	73524122	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73524122C>T	uc004ebs.3	+	1	98	c.21C>T	c.(19-21)TTC>TTT	p.F7F		NM_203303	NP_976048	Q8WW36	ZCH13_HUMAN	zinc finger, CCHC domain containing 13	7	CCHC-type 1; degenerate.						nucleic acid binding|zinc ion binding				0						AGGATTTCTTCGCGTGTGGAC	0.627													5	4					0	0	0.000602	0	0
RLIM	51132	broad.mit.edu	37	X	73814155	73814155	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73814155G>T	uc004ebu.2	-	4	529	c.239C>A	c.(238-240)TCA>TAA	p.S80*	RLIM_uc004ebw.2_Nonsense_Mutation_p.S80*	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	80					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ATTTTCATCTGAGTTTTGCGG	0.423													33	4					1.58521e-26	2.31326e-26	0.005524	1	0
KIAA2022	340533	broad.mit.edu	37	X	73959966	73959966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73959966C>T	uc004eby.2	-	3	5043	c.4426G>A	c.(4426-4428)GAG>AAG	p.E1476K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1476					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTCCCAGACTCATCCTTGTGG	0.478													36	5					0	0	0.001951	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963608	73963608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73963608C>T	uc004eby.2	-	3	1401	c.784G>A	c.(784-786)GAG>AAG	p.E262K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	262					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						ATAAAAGTCTCGAAGTAACCC	0.393													31	37					0	0	0.002096	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963876	73963876	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:73963876C>T	uc004eby.2	-	3	1133	c.516G>A	c.(514-516)AGG>AGA	p.R172R		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	172					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTCATAATCCCTATTTAGAT	0.453													23	2					0	0	0.004656	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74648914	74648914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:74648914C>T	uc004ecg.2	-	7	1080	c.602G>A	c.(601-603)AGA>AAA	p.R201K	ZDHHC15_uc004ech.2_Missense_Mutation_p.R192K|ZDHHC15_uc011mqo.1_Intron	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	201						integral to membrane	zinc ion binding			ovary(2)	2						TTAACTTACTCTCCAGTATTT	0.373													5	14					0	0	0.000602	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004023	75004023	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:75004023G>A	uc004ecj.1	-	1	1049	c.864C>T	c.(862-864)GCC>GCT	p.A288A		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	288	MAGE 1.									ovary(1)|skin(1)	2						CACCTTCCAGGGCCTTATTAT	0.473													17	33					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	X	80185320	80185320	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:80185320G>A	uc004eec.1	+	1	393	c.219G>A	c.(217-219)GGG>GGA	p.G73G						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CTAACACTGGGAAAAAAAATG	0.488													20	5					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	X	80185720	80185720	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:80185720C>T	uc004eec.1	+	1	793	c.619C>T	c.(619-621)CTG>TTG	p.L207L						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		CAACTCCAGCCTGATAGGTTT	0.502													58	16					0	0	0.003610	0	0
POU3F4	5456	broad.mit.edu	37	X	82764188	82764188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:82764188G>A	uc004eeg.2	+	1	920	c.856G>A	c.(856-858)GAG>AAG	p.E286K		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	286	Homeobox.				sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GACCTCCATCGAGGTGAGTGT	0.607													20	3					0	0	0.001523	0	0
POF1B	79983	broad.mit.edu	37	X	84559434	84559434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:84559434C>T	uc004eer.2	-	14	1627	c.1481G>A	c.(1480-1482)GGA>GAA	p.G494E	POF1B_uc004ees.2_Missense_Mutation_p.G494E	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	494							actin binding				0						ACTACAACTTCCTTCTCTCTT	0.303													20	1					0	0	0.001216	0	0
POF1B	79983	broad.mit.edu	37	X	84569509	84569509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:84569509C>T	uc004eer.2	-	9	1032	c.886G>A	c.(886-888)GAA>AAA	p.E296K	POF1B_uc004ees.2_Missense_Mutation_p.E296K	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	296							actin binding				0						TCAATGTCTTCCGACTGTAAG	0.368													16	0					0	0	0.006122	0	0
DACH2	117154	broad.mit.edu	37	X	86067880	86067880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:86067880C>T	uc004eew.2	+	8	1432	c.1262C>T	c.(1261-1263)CCA>CTA	p.P421L	DACH2_uc004eex.2_Missense_Mutation_p.P408L|DACH2_uc010nmq.2_Missense_Mutation_p.P287L|DACH2_uc011mra.1_Missense_Mutation_p.P254L|DACH2_uc010nmr.2_Missense_Mutation_p.P202L|DACH2_uc004eey.2_Missense_Mutation_p.P104L|DACH2_uc004eez.2_Missense_Mutation_p.P104L	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	421					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						GTTCAAATTCCAATAATGAAG	0.443													28	3					0	0	0.002445	0	0
PCDH19	57526	broad.mit.edu	37	X	99661775	99661775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:99661775C>T	uc010nmz.2	-	1	3497	c.1821G>A	c.(1819-1821)ATG>ATA	p.M607I	PCDH19_uc004efw.3_Missense_Mutation_p.M607I|PCDH19_uc004efx.3_Missense_Mutation_p.M607I	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	607	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CGCCCTCGGTCATGTCGTAGG	0.552													26	5					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	X	100143173	100143173	+	RNA	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:100143173G>A	uc010nnf.2	-	1		c.445C>T			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		CCTCAGTCATGATTTCAATCA	0.378													19	5					0	0	0.007413	0	0
TCEAL5	340543	broad.mit.edu	37	X	102529337	102529337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:102529337C>T	uc004ejz.1	-	3	450	c.155G>A	c.(154-156)GGA>GAA	p.G52E		NM_001012979	NP_001012997	Q5H9L2	TCAL5_HUMAN	transcription elongation factor A (SII)-like 5	52	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(1)|breast(1)	2						ctctcgctttccctcgcattc	0.159													23	4					0	0	0.001882	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104440255	104440255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:104440255C>T	uc004elz.1	+	3	937	c.181C>T	c.(181-183)CGT>TGT	p.R61C		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	61	Ig-like C2-type 1.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CAGTTATATTCGTACCAACTA	0.473													30	3					0	0	0.001786	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450200	105450200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:105450200G>A	uc004emf.1	+	4	1424	c.775G>A	c.(775-777)GAG>AAG	p.E259K	MUM1L1_uc004emg.1_Missense_Mutation_p.E259K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	259										ovary(2)|pancreas(1)|skin(1)	4						AGAAGAGAGCGAGGATACCTG	0.453													7	4					0	0	0.003080	0	0
COL4A6	1288	broad.mit.edu	37	X	107415711	107415711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:107415711G>A	uc004enw.3	-	32	3296	c.3193C>T	c.(3193-3195)CCA>TCA	p.P1065S	COL4A6_uc004env.3_Missense_Mutation_p.P1064S|COL4A6_uc011msn.1_Missense_Mutation_p.P1064S|COL4A6_uc010npk.2_Missense_Mutation_p.P1064S	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1065	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TTCAGGCCTGGGAGACCAGAT	0.458									Alport_syndrome_with_Diffuse_Leiomyomatosis				48	66					0	0	0.003610	0	0
COL4A6	1288	broad.mit.edu	37	X	107424153	107424153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:107424153C>T	uc004enw.3	-	24	2103	c.2000G>A	c.(1999-2001)GGA>GAA	p.G667E	COL4A6_uc004env.3_Missense_Mutation_p.G666E|COL4A6_uc011msn.1_Missense_Mutation_p.G666E|COL4A6_uc010npk.2_Missense_Mutation_p.G666E	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	667	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GCCTGGAAATCCTGATGGACC	0.488									Alport_syndrome_with_Diffuse_Leiomyomatosis				21	2					0	0	0.003954	0	0
COL4A5	1287	broad.mit.edu	37	X	107869489	107869489	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:107869489A>C	uc004enz.1	+	36	3358	c.3156A>C	c.(3154-3156)CAA>CAC	p.Q1052H	COL4A5_uc011mso.1_Missense_Mutation_p.Q1052H|COL4A5_uc004eob.1_Missense_Mutation_p.Q660H	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1052	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TTCCTGGACAACCTGGCTCCC	0.458									Alport_syndrome_with_Diffuse_Leiomyomatosis				31	12					0	0	0.002836	0	0
GUCY2F	2986	broad.mit.edu	37	X	108638692	108638692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:108638692G>A	uc004eod.3	-	12	2578	c.2302C>T	c.(2302-2304)CCT>TCT	p.P768S	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	768	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TACACAGGAGGAGGCTTCTTA	0.468													96	21					0	0	0.003610	0	0
GUCY2F	2986	broad.mit.edu	37	X	108718802	108718802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:108718802C>T	uc004eod.3	-	2	640	c.364G>A	c.(364-366)GGA>AGA	p.G122R	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	122	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCAATAAATCCTGAGGCCATC	0.478											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	116	118					0	0	0.003610	0	0
CHRDL1	91851	broad.mit.edu	37	X	109964648	109964648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:109964648G>A	uc004eou.3	-	5	761	c.412C>T	c.(412-414)CGG>TGG	p.R138W	CHRDL1_uc004eov.2_Missense_Mutation_p.R132W|CHRDL1_uc004eow.2_Missense_Mutation_p.R137W|CHRDL1_uc010nps.2_Missense_Mutation_p.R137W|CHRDL1_uc004eot.2_Intron|CHRDL1_uc011mss.1_Intron|CHRDL1_uc004eox.3_Missense_Mutation_p.R131W	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	131	VWFC 2.				BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						TTGGGTTGCCGATTCTGAAAG	0.483													75	91					0	0	0.003610	0	0
ALG13	79868	broad.mit.edu	37	X	110951444	110951444	+	Silent	SNP	T	C	C			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:110951444T>C	uc011msy.1	+	4	607	c.573T>C	c.(571-573)GCT>GCC	p.A191A	ALG13_uc011msw.1_Silent_p.A113A|ALG13_uc011msx.1_Silent_p.A87A|ALG13_uc011msz.1_Silent_p.A113A|ALG13_uc011mta.1_Silent_p.A87A|ALG13_uc011mtb.1_Silent_p.A87A			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	191					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						CTTGCCACGCTTTTTTTCCTC	0.483													3	45					0	0	0.000248	0	0
TRPC5	7224	broad.mit.edu	37	X	111097282	111097282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:111097282C>T	uc004epl.1	-	4	1872	c.953G>A	c.(952-954)GGC>GAC	p.G318D	TRPC5_uc004epm.1_Missense_Mutation_p.G318D	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	318	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TCCAGGGAAGCCATCATACCA	0.498													16	4					0	0	0.004007	0	0
TRPC5	7224	broad.mit.edu	37	X	111195330	111195330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:111195330C>T	uc004epl.1	-	2	1238	c.319G>A	c.(319-321)GAA>AAA	p.E107K	TRPC5_uc004epm.1_Missense_Mutation_p.E107K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	107	ANK 3.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CCCACCACTTCCTTGCGTATG	0.537													94	10					0	0	0.003610	0	0
MIR1264	100302251	broad.mit.edu	37	X	113887149	113887149	+	RNA	SNP	G	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:113887149G>T	hsa-mir-1264|MI0003758	+			c.20G>T			HTR2C_uc004epu.1_Intron|HTR2C_uc010nqc.1_Intron|HTR2C_uc004epv.1_Intron																	0						ataagtatttgttgaaagaat	0.244													19	5					2.94398e-08	4.26589e-08	0.007413	1	0
IL13RA2	3598	broad.mit.edu	37	X	114245314	114245314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:114245314G>A	uc004epx.2	-	6	724	c.599C>T	c.(598-600)CCC>CTC	p.P200L	IL13RA2_uc010nqd.1_Missense_Mutation_p.P200L	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	200	Extracellular (Potential).|Fibronectin type-III 2.					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						CTCCAAATAGGGAAATCTGCA	0.368													41	6					0	0	0.006230	0	0
SLC6A14	11254	broad.mit.edu	37	X	115585494	115585494	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:115585494G>A	uc004eqi.2	+	10	1394	c.1290G>A	c.(1288-1290)ACG>ACA	p.T430T		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	430					cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	CTGAAGAAACGATCACAACAA	0.348													27	5					0	0	0.004656	0	0
DOCK11	139818	broad.mit.edu	37	X	117680003	117680003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:117680003C>T	uc004eqp.2	+	6	545	c.482C>T	c.(481-483)TCT>TTT	p.S161F		NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	161					blood coagulation	cytosol	GTP binding			ovary(3)	3						TCTTTATGTTCTCAGAAGGGT	0.363													37	6					0	0	0.006230	0	0
UPF3B	65109	broad.mit.edu	37	X	118971902	118971903	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:118971902_118971903GG>AA	uc004erz.1	-	10	1196_1197	c.1119_1120CC>TT	c.(1117-1122)CGCCGT>CGTTGT	p.R374C	UPF3B_uc004esa.1_Missense_Mutation_p.R361C	NM_080632	NP_542199	Q9BZI7	REN3B_HUMAN	UPF3 regulator of nonsense transcripts homolog B	374	Sufficient for association with EJC core.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|termination of RNA polymerase II transcription	cytosol|exon-exon junction complex|nucleoplasm	mRNA binding|nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(2)|kidney(1)	3						TTCTGCCTACGGCGCTCTTCTT	0.465													65	13					0	0	0.004672	0	0
CUL4B	8450	broad.mit.edu	37	X	119680416	119680416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:119680416G>A	uc004esw.2	-	6	1323	c.886C>T	c.(886-888)CAT>TAT	p.H296Y	CUL4B_uc010nqq.2_5'UTR|CUL4B_uc004esv.2_Missense_Mutation_p.H278Y	NM_003588	NP_003579	Q13620	CUL4B_HUMAN	cullin 4B isoform 1	296					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			lung(1)|central_nervous_system(1)|pancreas(1)	3						TGTCTGCAATGGTTTTGCCAG	0.303													17	20					0	0	0.001216	0	0
C1GALT1C1	29071	broad.mit.edu	37	X	119760717	119760717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:119760717G>A	uc004esy.2	-	3	652	c.305C>T	c.(304-306)TCT>TTT	p.S102F	C1GALT1C1_uc004esz.2_Missense_Mutation_p.S102F	NM_152692	NP_689905	Q96EU7	C1GLC_HUMAN	C1GALT1-specific chaperone 1	102	Lumenal (Potential).					integral to membrane					0						AACATTTTCAGAACTGAAGAA	0.363													47	7					0	0	0.002852	0	0
CT47B1	643311	broad.mit.edu	37	X	120008958	120008958	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:120008958C>T	uc011muc.1	-	1	822	c.567G>A	c.(565-567)CTG>CTA	p.L189L		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	189											0						CCTCCTGGATCAGGCCGAGGC	0.716													21	23					0	0	0.001523	0	0
GRIA3	2892	broad.mit.edu	37	X	122538605	122538605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:122538605G>A	uc004etq.3	+	11	1633	c.1340G>A	c.(1339-1341)GGA>GAA	p.G447E	GRIA3_uc004etr.3_Missense_Mutation_p.G447E|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.G431E	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	447	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	CAACTGGAAGGAAATGAACGA	0.373													33	3					0	0	0.004878	0	0
GRIA3	2892	broad.mit.edu	37	X	122551351	122551351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:122551351G>A	uc004etq.3	+	12	1892	c.1599G>A	c.(1597-1599)ATG>ATA	p.M533I	GRIA3_uc004etr.3_Missense_Mutation_p.M533I|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.M517I	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	533	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCTCCATCATGATAAAGAAGC	0.423													71	74					0	0	0.003610	0	0
ODZ1	10178	broad.mit.edu	37	X	123517540	123517540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:123517540G>A	uc004euj.2	-	29	7284	c.7220C>T	c.(7219-7221)TCC>TTC	p.S2407F	ODZ1_uc011muj.1_Missense_Mutation_p.S2413F|ODZ1_uc010nqy.2_Missense_Mutation_p.S2414F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2407	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						ATTTTCAAAGGAGTAGAGGTT	0.373													25	35					0	0	0.003954	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685897	125685897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:125685897G>A	uc004eul.2	-	1	946	c.695C>T	c.(694-696)GCC>GTC	p.A232V		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	232										skin(3)|ovary(1)	4						GCTATGCCAGGCAACAGTGTC	0.647													20	2					0	0	0.001216	0	0
UTP14A	10813	broad.mit.edu	37	X	129063461	129063461	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:129063461C>T	uc004euz.2	+	15	2221	c.2193C>T	c.(2191-2193)CCC>CCT	p.P731P	UTP14A_uc011mup.1_Silent_p.P679P|UTP14A_uc011muq.1_Silent_p.P677P	NM_006649	NP_006640	Q9BVJ6	UT14A_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	731					rRNA processing	nucleolus|small-subunit processome	protein binding			ovary(2)	2						TCATTAACCCCATAAAAGCAG	0.512													12	36					0	0	0.001855	0	0
IGSF1	3547	broad.mit.edu	37	X	130408083	130408083	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:130408083C>T	uc004ewd.2	-	19	4087	c.3849G>A	c.(3847-3849)TGG>TGA	p.W1283*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W1277*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W1263*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	1283	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GCCACTTCTTCCACTCTATGG	0.507													57	67					0	0	0.003610	0	0
IGSF1	3547	broad.mit.edu	37	X	130412483	130412483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:130412483C>T	uc004ewd.2	-	12	2231	c.1993G>A	c.(1993-1995)GAG>AAG	p.E665K	IGSF1_uc004ewe.3_Missense_Mutation_p.E659K|IGSF1_uc004ewf.2_Missense_Mutation_p.E645K	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	665	Extracellular (Potential).|Ig-like C2-type 6.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						ACAGCCATCTCCTCCCATGAA	0.637													47	55					0	0	0.003610	0	0
IGSF1	3547	broad.mit.edu	37	X	130415714	130415714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:130415714C>T	uc004ewd.2	-	8	1689	c.1451G>A	c.(1450-1452)TGC>TAC	p.C484Y	IGSF1_uc004ewe.3_Missense_Mutation_p.C473Y|IGSF1_uc004ewf.2_Missense_Mutation_p.C464Y	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	484	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GCGATAGCTGCAACTGTAGGT	0.478													43	1					0	0	0.003214	0	0
IGSF1	3547	broad.mit.edu	37	X	130415851	130415851	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:130415851G>A	uc004ewd.2	-	8	1552	c.1314C>T	c.(1312-1314)ACC>ACT	p.T438T	IGSF1_uc004ewe.3_Silent_p.T427T|IGSF1_uc004ewf.2_Silent_p.T418T	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	438	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGCACTGAAGGGTGATGGCCT	0.468													34	1					0	0	0.003755	0	0
OR13H1	347468	broad.mit.edu	37	X	130678432	130678432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:130678432C>T	uc011muw.1	+	1	385	c.385C>T	c.(385-387)CCC>TCC	p.P129S	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TATCAGCAATCCCCTGCGTTA	0.532													94	14					0	0	0.003610	0	0
GPC3	2719	broad.mit.edu	37	X	132887940	132887940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:132887940C>T	uc004exe.1	-	3	791	c.601G>A	c.(601-603)GCA>ACA	p.A201T	GPC3_uc004exd.1_Missense_Mutation_p.A73T|GPC3_uc010nrn.1_Missense_Mutation_p.A201T|GPC3_uc011mvh.1_Missense_Mutation_p.A185T|GPC3_uc010nro.1_Missense_Mutation_p.A147T|GPC3_uc010nrp.1_Missense_Mutation_p.A73T	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	201						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TCACGTCTTGCTCCTCGGAGG	0.473			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				118	23					0	0	0.003610	0	0
SAGE1	55511	broad.mit.edu	37	X	134990381	134990381	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:134990381G>A	uc004ezh.2	+	11	1460	c.1293G>A	c.(1291-1293)AGG>AGA	p.R431R	SAGE1_uc010nry.1_Silent_p.R400R|SAGE1_uc011mvv.1_Intron	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	431										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGAGTACCAGGGATCAGTGTA	0.398													38	6					0	0	0.003214	0	0
GPR112	139378	broad.mit.edu	37	X	135428096	135428096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:135428096G>A	uc004ezu.1	+	6	2522	c.2231G>A	c.(2230-2232)GGA>GAA	p.G744E	GPR112_uc010nsb.1_Missense_Mutation_p.G539E|GPR112_uc010nsc.1_Missense_Mutation_p.G511E	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	744	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATAGTTTCTGGAACCACATCC	0.378													35	3					0	0	0.003755	0	0
VGLL1	51442	broad.mit.edu	37	X	135618348	135618348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:135618348G>A	uc004ezy.2	+	2	339	c.169G>A	c.(169-171)GAA>AAA	p.E57K		NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	57					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GAGCCCCCAGGAATTGACCCC	0.537													29	34					0	0	0.002445	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993841	140993841	+	Silent	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:140993841C>T	uc004fbt.2	+	4	937	c.651C>T	c.(649-651)TCC>TCT	p.S217S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	217							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAGAGTTCCCCTGAGAGAA	0.493										HNSCC(15;0.026)			80	45					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994321	140994321	+	Silent	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:140994321G>A	uc004fbt.2	+	4	1417	c.1131G>A	c.(1129-1131)GGG>GGA	p.G377G	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	377							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AGATTCCTGGGAGCCCCTCCT	0.483										HNSCC(15;0.026)			133	11					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994883	140994883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:140994883C>T	uc004fbt.2	+	4	1979	c.1693C>T	c.(1693-1695)CCT>TCT	p.P565S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	565							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCACTACTTTCCTCAGAGCCC	0.572										HNSCC(15;0.026)			217	52					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995456	140995456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:140995456C>T	uc004fbt.2	+	4	2552	c.2266C>T	c.(2266-2268)CCC>TCC	p.P756S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	756							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTGAGTCTTCCCCAGAGTTT	0.547										HNSCC(15;0.026)			108	23					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995510	140995510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:140995510C>T	uc004fbt.2	+	4	2606	c.2320C>T	c.(2320-2322)CCT>TCT	p.P774S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	774							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TGCTCAGTCTCCTCTCCAGAG	0.557										HNSCC(15;0.026)			106	20					0	0	0.003610	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290737	141290737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:141290737G>A	uc004fbu.1	-	3	1385	c.1037C>T	c.(1036-1038)GCC>GTC	p.A346V		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	346						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATCAATTGTGGCCTGGACTCT	0.453										HNSCC(46;0.14)			38	52					0	0	0.002222	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290915	141290915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:141290915G>A	uc004fbu.1	-	3	1207	c.859C>T	c.(859-861)CGG>TGG	p.R287W		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	287	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGCACCTCCCGATACTCCAGG	0.502										HNSCC(46;0.14)			22	31					0	0	0.001523	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717156	142717156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:142717156G>A	uc004fbx.2	-	2	2145	c.1769C>T	c.(1768-1770)CCA>CTA	p.P590L	SLITRK4_uc004fby.2_Missense_Mutation_p.P590L	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	590	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GCTTGTGAATGGTGCAGACGG	0.448													28	43					0	0	0.007291	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967459	142967459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:142967459G>A	uc004fca.2	+	1	287	c.257G>A	c.(256-258)AGA>AAA	p.R86K		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	86							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTTGGAAAGAATAAGTTTA	0.403													44	4					0	0	0.001951	0	0
PASD1	139135	broad.mit.edu	37	X	150828184	150828184	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:150828184G>A	uc004fev.3	+	10	1050	c.718_splice	c.e10-1	p.D240_splice		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1							nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAAATGTACAGGACCAAATTG	0.368													18	26					0	0	0.001216	0	0
CNGA2	1260	broad.mit.edu	37	X	150911103	150911103	+	Missense_Mutation	SNP	G	A	A	rs139084709		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:150911103G>A	uc004fey.1	+	6	802	c.578G>A	c.(577-579)CGA>CAA	p.R193Q		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	193	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTCTTCATCCGATTGCGCACA	0.498													52	11					0	0	0.003610	0	0
CNGA2	1260	broad.mit.edu	37	X	150912737	150912737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:150912737G>A	uc004fey.1	+	7	1986	c.1762G>A	c.(1762-1764)GAA>AAA	p.E588K		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	588	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGATGAGAACGAAGTGGCAAC	0.547													74	16					0	0	0.003610	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303846	151303846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:151303846G>A	uc004ffk.2	-	5	655	c.247C>T	c.(247-249)CCT>TCT	p.P83S	MAGEA10_uc004ffl.2_Missense_Mutation_p.P83S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	83											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCTGGGGAGGATTTGGTGTC	0.428													103	15					0	0	0.003610	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935417	151935417	+	Silent	SNP	G	A	A	rs149076914		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:151935417G>A	uc004fgp.2	-	3	959	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	250	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTGCACGAAATGTTGGG	0.537													51	57					0	0	0.003610	0	0
IDH3G	3421	broad.mit.edu	37	X	153056285	153056285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chrX:153056285G>A	uc004fip.2	-	2	289	c.103C>T	c.(103-105)CCC>TCC	p.P35S	IDH3G_uc004fio.2_5'UTR|IDH3G_uc004fiq.2_Missense_Mutation_p.P35S|IDH3G_uc010num.2_Intron|IDH3G_uc004fir.2_5'UTR|IDH3G_uc004fit.1_Missense_Mutation_p.P35S|IDH3G_uc004fis.2_5'UTR	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	35					carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	TTCCTCGAGGGGACCTCGTGG	0.567													27	5					0	0	0.007291	0	0
GBF1	8729	broad.mit.edu	37	10	104126880	104126881	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr10:104126880_104126881insT	uc001kux.1	+	20	2709_2710	c.2469_2470insT	c.(2467-2472)TGCTTTfs	p.C823fs	GBF1_uc001kuy.1_Frame_Shift_Ins_p.C823fs|GBF1_uc001kuz.1_Frame_Shift_Ins_p.C824fs	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	823_824	SEC7.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GCGATGCCTGCTTTTCCCTGGC	0.485													76	63	---	---	---	---					
LRRK2	120892	broad.mit.edu	37	12	40668769	40668769	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr12:40668769delA	uc001rmg.3	+	16	2036	c.1915delA	c.(1915-1917)AAGfs	p.K639fs	LRRK2_uc001rmh.1_Frame_Shift_Del_p.K261fs	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	639					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ATACCGATTTAAGGATGTTGC	0.368													15	40	---	---	---	---					
ITGAX	3687	broad.mit.edu	37	16	31388365	31388365	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr16:31388365delG	uc002ebu.1	+	22	2737	c.2670delG	c.(2668-2670)CTGfs	p.L890fs	ITGAX_uc002ebt.2_Frame_Shift_Del_p.L890fs	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	890	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGGCTGTCCTGGGAGACCGGC	0.602													24	64	---	---	---	---					
STXBP2	6813	broad.mit.edu	37	19	7705879	7705879	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:7705879delA	uc002mha.3	+	6	464	c.419delA	c.(418-420)TACfs	p.Y140fs	STXBP2_uc002mhb.3_Frame_Shift_Del_p.Y137fs|STXBP2_uc010dvj.2_RNA|STXBP2_uc010xjr.1_Frame_Shift_Del_p.Y151fs|STXBP2_uc010dvk.2_Frame_Shift_Del_p.Y108fs|STXBP2_uc002mhc.3_5'UTR|STXBP2_uc010dvl.1_Frame_Shift_Del_p.Y301fs	NM_006949	NP_008880	Q15833	STXB2_HUMAN	syntaxin binding protein 2 isoform a	140					leukocyte mediated cytotoxicity|neutrophil degranulation|protein transport|regulation of mast cell degranulation|vesicle docking involved in exocytosis	azurophil granule|cytolytic granule|cytosol|specific granule|tertiary granule	syntaxin-3 binding			central_nervous_system(1)	1						TTCCTCCCCTACGAGGCCCAG	0.582													17	52	---	---	---	---					
OR7E24	26648	broad.mit.edu	37	19	9362720	9362721	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:9362720_9362721insT	uc002mlb.1	+	1	1001_1002	c.1001_1002insT	c.(1000-1002)CCTfs	p.P334fs		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	334	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CATCTCCATCCTTTTTGTTATA	0.441													23	15	---	---	---	---					
EPS8L1	54869	broad.mit.edu	37	19	55597515	55597515	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr19:55597515delC	uc002qis.3	+	16	1709	c.1605delC	c.(1603-1605)TACfs	p.Y535fs	EPS8L1_uc010ess.1_Frame_Shift_Del_p.Y549fs|EPS8L1_uc010yfr.1_Frame_Shift_Del_p.Y471fs|EPS8L1_uc002qiu.2_Frame_Shift_Del_p.Y408fs|EPS8L1_uc002qiv.2_Frame_Shift_Del_p.Y213fs|EPS8L1_uc002qiw.2_Frame_Shift_Del_p.Y314fs	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	535	Pro-rich.|SH3.					cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TGACACCCTACCCCGGACCCC	0.632													12	92	---	---	---	---					
ERLEC1	27248	broad.mit.edu	37	2	54042070	54042070	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:54042070delG	uc002rxl.2	+	13	1658	c.1378delG	c.(1378-1380)GGGfs	p.G460fs	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Frame_Shift_Del_p.G434fs|ERLEC1_uc002rxn.2_Frame_Shift_Del_p.G406fs	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	460					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						ATATATTCTTGGGGTAAGTTA	0.259													24	34	---	---	---	---					
DPP10	57628	broad.mit.edu	37	2	116066879	116066879	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:116066879delT	uc002tla.1	+	2	582	c.125delT	c.(124-126)ATTfs	p.I42fs	DPP10_uc002tlb.1_5'UTR|DPP10_uc002tlc.1_Frame_Shift_Del_p.I38fs|DPP10_uc002tle.2_Frame_Shift_Del_p.I46fs|DPP10_uc002tlf.1_Frame_Shift_Del_p.I35fs	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	42	Mediates effects on KCND2.|Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CTGCTGGTGATTTTAGTTGTA	0.393													34	36	---	---	---	---					
KIF1A	547	broad.mit.edu	37	2	241700192	241700193	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr2:241700192_241700193insG	uc002vzy.2	-	24	2452_2453	c.2306_2307insC	c.(2305-2307)CCAfs	p.P769fs	KIF1A_uc010fzk.2_Frame_Shift_Ins_p.P778fs|KIF1A_uc002vzz.1_Frame_Shift_Ins_p.P778fs	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	769					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		TGGCGGCCTCTGGGGGCAGCAG	0.634													4	9	---	---	---	---					
DHX30	22907	broad.mit.edu	37	3	47884677	47884677	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:47884677delG	uc003cru.2	+	9	1297	c.871delG	c.(871-873)GTTfs	p.V291fs	DHX30_uc003crt.2_Frame_Shift_Del_p.V252fs|DHX30_uc010hjr.1_Frame_Shift_Del_p.V319fs	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	291						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		CATGACCTTTGTTGCCAAAGG	0.562													25	58	---	---	---	---					
ABHD6	57406	broad.mit.edu	37	3	58256707	58256707	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr3:58256707delA	uc003djs.3	+	5	849	c.439delA	c.(439-441)ACCfs	p.T147fs	ABHD6_uc003djr.2_Frame_Shift_Del_p.T147fs|ABHD6_uc003djt.3_Frame_Shift_Del_p.T147fs	NM_020676	NP_065727	Q9BV23	ABHD6_HUMAN	abhydrolase domain containing 6	147	Cytoplasmic (Potential).					integral to membrane	acylglycerol lipase activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(55;0.000225)|KIRC - Kidney renal clear cell carcinoma(284;0.0471)|Kidney(284;0.0589)|OV - Ovarian serous cystadenocarcinoma(275;0.209)		CCTGGTAGGCACCTCCATGGG	0.502													34	37	---	---	---	---					
GPR125	166647	broad.mit.edu	37	4	22389418	22389418	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:22389418delA	uc003gqm.1	-	19	4141	c.3876delT	c.(3874-3876)ATTfs	p.I1292fs	GPR125_uc010ieo.1_Frame_Shift_Del_p.I1148fs|GPR125_uc003gql.1_Frame_Shift_Del_p.I419fs	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	1292	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				CATTGCTTTTAATTGGTCCAT	0.448													30	29	---	---	---	---					
RNF175	285533	broad.mit.edu	37	4	154649461	154649461	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr4:154649461delA	uc003int.2	-	4	672	c.299delT	c.(298-300)TTAfs	p.L100fs	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	100	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				CCACCAGTATAATTTTATCGT	0.458													64	60	---	---	---	---					
PGGT1B	5229	broad.mit.edu	37	5	114548115	114548125	+	Frame_Shift_Del	DEL	ACATTCTCTGA	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr5:114548115_114548125delACATTCTCTGA	uc003kqw.3	-	9	1129_1139	c.1108_1118delTCAGAGAATGT	c.(1108-1119)TCAGAGAATGTAfs	p.S370fs	PGGT1B_uc003kqx.3_Frame_Shift_Del_p.S247fs|PGGT1B_uc010jch.2_Frame_Shift_Del_p.S293fs	NM_005023	NP_005014	P53609	PGTB1_HUMAN	geranylgeranyltransferase type 1 beta	370_373					protein geranylgeranylation	CAAX-protein geranylgeranyltransferase complex	CAAX-protein geranylgeranyltransferase activity				0		all_cancers(142;0.000523)|all_epithelial(76;6.45e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		Epithelial(69;2.95e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.98e-08)|all cancers(49;3.1e-06)	Pravastatin(DB00175)	GGAGATATGTACATTCTCTGAGCATTGTTTA	0.412													33	86	---	---	---	---					
C6orf153	88745	broad.mit.edu	37	6	42989414	42989419	+	In_Frame_Del	DEL	GCCGGG	-	-	rs3833662		TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr6:42989414_42989419delGCCGGG	uc003otp.1	+	1	30_35	c.22_27delGCCGGG	c.(22-27)GCCGGGdel	p.AG14del		NM_033112	NP_149103	Q96EU6	RRP36_HUMAN	hypothetical protein LOC88745	14_15					ribosomal small subunit biogenesis|rRNA processing	nucleolus					0			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			TAACTAccgcgccggggccggggccg	0.529													7	4	---	---	---	---					
LMTK2	22853	broad.mit.edu	37	7	97736519	97736521	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2MS-06A-11D-A197-08	TCGA-EE-A2MS-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6b733112-76b6-455c-b41e-345acccb10de	3ee595d3-1187-4455-9715-b86e0e8e71a2	g.chr7:97736519_97736521delGCT	uc003upd.1	+	1	323_325	c.30_32delGCT	c.(28-33)AGGCTG>AGG	p.L16del		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	16					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TGCGGCGGAGGCTGCTGCTGCTG	0.665													2	4	---	---	---	---					
