Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VWA1	64856	broad.mit.edu	37	1	1372758	1372758	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:1372758C>T	uc001afs.2	+	2	745	c.525C>T	c.(523-525)TTC>TTT	p.F175F	VWA1_uc001afr.2_5'UTR	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	175	VWFA.					basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GAGGCAACTTCCTGGAGCTGT	0.632													22	14					0	0	0.010504	0	0
PER3	8863	broad.mit.edu	37	1	7844950	7844950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:7844950G>A	uc001aoo.2	+	1	188	c.13G>A	c.(13-15)GAA>AAA	p.E5K	PER3_uc009vmg.1_Missense_Mutation_p.E5K|PER3_uc009vmh.1_Missense_Mutation_p.E5K|PER3_uc001aop.2_Missense_Mutation_p.E5K|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Missense_Mutation_p.E5K	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCGCGGGGAAGCTCCTGG	0.677													8	3					0	0	0.003080	0	0
PER3	8863	broad.mit.edu	37	1	7844970	7844970	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:7844970A>G	uc001aoo.2	+	1	208	c.33A>G	c.(31-33)AGA>AGG	p.R11R	PER3_uc009vmg.1_Silent_p.R11R|PER3_uc009vmh.1_Silent_p.R11R|PER3_uc001aop.2_Silent_p.R11R|PER3_uc010nzw.1_5'UTR|PER3_uc001aon.2_Silent_p.R11R	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCGGGAGACGGGGGGCTA	0.687													9	3					0	0	0.004482	0	0
SLC45A1	50651	broad.mit.edu	37	1	8390873	8390873	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:8390873G>A	uc001apb.2	+	4	1320	c.1320G>A	c.(1318-1320)TTG>TTA	p.L440L	SLC45A1_uc001apc.2_Silent_p.L138L	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	440					carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGCTCCTTGGACACCTCTA	0.642													23	22					0	0	0.003330	0	0
TNFRSF8	943	broad.mit.edu	37	1	12157167	12157167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:12157167C>T	uc001atq.2	+	3	383	c.161C>T	c.(160-162)CCG>CTG	p.P54L	TNFRSF8_uc010obc.1_5'UTR	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	54	TNFR-Cys 1.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCTGTTCCCGACACAGCAG	0.577													22	16					0	0	0.012319	0	0
VPS13D	55187	broad.mit.edu	37	1	12339685	12339685	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:12339685G>T	uc001atv.2	+	20	4721	c.4580G>T	c.(4579-4581)GGA>GTA	p.G1527V	VPS13D_uc001atw.2_Missense_Mutation_p.G1527V|VPS13D_uc001atx.2_Missense_Mutation_p.G715V	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1527					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAGATTGAAGGAAAATTTGTC	0.328													27	13					1.68575e-08	1.72047e-08	0.007291	1	0
CLCNKB	1188	broad.mit.edu	37	1	16378204	16378204	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:16378204G>A	uc001axw.3	+	14	1378	c.1298_splice	c.e14-1	p.G433_splice	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Splice_Site_p.G433_splice|CLCNKB_uc001axy.3_Splice_Site_p.G264_splice	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1						excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		TCTGTGGCCAGGAGCTGCTAT	0.622													40	29					0	0	0.011902	0	0
NBPF1	55672	broad.mit.edu	37	1	16891330	16891330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:16891330C>T	uc009vos.1	-	30	4261	c.3373G>A	c.(3373-3375)GAA>AAA	p.E1125K	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1125	NBPF 8.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGAtcttcttccccttctttt	0.249													12	357					0	0	0.001855	0	0
NBPF1	55672	broad.mit.edu	37	1	16907419	16907419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:16907419G>A	uc009vos.1	-	16	2300	c.1412C>T	c.(1411-1413)CCT>CTT	p.P471L	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P200L	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	471	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TGAGTCCTCAGGGACTTTGCT	0.512													40	275					0	0	0.014410	0	0
PADI6	353238	broad.mit.edu	37	1	17698840	17698840	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:17698840T>G	uc001bak.1	+	1	100	c.100T>G	c.(100-102)TGC>GGC	p.C34G		NM_207421	NP_997304	Q6TGC4	PADI6_HUMAN	peptidylarginine deiminase type 6	26					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CACAGAAATCTGCTTGGATCT	0.527													43	50					0	0	0.010771	0	0
PINK1	65018	broad.mit.edu	37	1	20964371	20964371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:20964371C>T	uc001bdm.2	+	2	518	c.424C>T	c.(424-426)CCG>TCG	p.P142S		NM_032409	NP_115785	Q9BXM7	PINK1_HUMAN	PTEN induced putative kinase 1 precursor	142	Cytoplasmic (Potential).				cell death|intracellular protein kinase cascade|mitochondrion degradation|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of release of cytochrome c from mitochondria|regulation of protein complex assembly|regulation of protein ubiquitination|response to stress	cytosol|integral to membrane|mitochondrial outer membrane	ATP binding|C3HC4-type RING finger domain binding|calcium-dependent protein kinase activity|magnesium ion binding|protein serine/threonine kinase activity|ubiquitin protein ligase binding			ovary(2)|central_nervous_system(1)	3		all_lung(284;2.72e-05)|Lung NSC(340;2.94e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.21e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000146)|Kidney(64;0.000182)|GBM - Glioblastoma multiforme(114;0.000497)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGGGCCTGACCCGTTGGACAC	0.542													19	21					0	0	0.008871	0	0
RCAN3	11123	broad.mit.edu	37	1	24840953	24840953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:24840953G>A	uc001bjj.2	+	2	404	c.91G>A	c.(91-93)GAA>AAA	p.E31K	RCAN3_uc009vrd.2_Missense_Mutation_p.E31K|RCAN3_uc009vre.2_Missense_Mutation_p.E31K|RCAN3_uc009vrf.2_Missense_Mutation_p.E31K|RCAN3_uc009vrg.2_Missense_Mutation_p.E31K	NM_013441	NP_038469	Q9UKA8	RCAN3_HUMAN	Down syndrome critical region gene 1-like 2	31					anatomical structure morphogenesis|calcium-mediated signaling		nucleotide binding|RNA binding|troponin I binding				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00473)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0427)|OV - Ovarian serous cystadenocarcinoma(117;1.13e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;0.000923)|BRCA - Breast invasive adenocarcinoma(304;0.0018)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.00493)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.14)		GATTTTTGGTGAAAATGAAGA	0.433													32	60					0	0	0.003271	0	0
SRRM1	10250	broad.mit.edu	37	1	24981485	24981485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:24981485C>T	uc001bjm.2	+	9	1404	c.1180C>T	c.(1180-1182)CCT>TCT	p.P394S	SRRM1_uc010oel.1_Missense_Mutation_p.P394S|SRRM1_uc009vrh.1_Missense_Mutation_p.P355S|SRRM1_uc009vri.1_Missense_Mutation_p.P311S|SRRM1_uc010oem.1_RNA	NM_005839	NP_005830	Q8IYB3	SRRM1_HUMAN	serine/arginine repetitive matrix 1	394	Pro-rich.|Necessary for speckles and matrix localization.|Arg-rich.|Ser-rich.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nuclear matrix|nuclear speck	DNA binding|protein binding|RNA binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0422)|OV - Ovarian serous cystadenocarcinoma(117;1.01e-24)|Colorectal(126;5.95e-08)|COAD - Colon adenocarcinoma(152;3.24e-06)|GBM - Glioblastoma multiforme(114;0.000148)|BRCA - Breast invasive adenocarcinoma(304;0.00177)|KIRC - Kidney renal clear cell carcinoma(1967;0.00348)|STAD - Stomach adenocarcinoma(196;0.00483)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.138)		TTCAGCAAGTCCTCCAAGGCG	0.542													45	66					0	0	0.009718	0	0
CLIC4	25932	broad.mit.edu	37	1	25124273	25124273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:25124273C>T	uc001bjo.2	+	2	398	c.113C>T	c.(112-114)TCC>TTC	p.S38F	CLIC4_uc001bjn.2_RNA|CLIC4_uc001bjp.1_Intron	NM_013943	NP_039234	Q9Y696	CLIC4_HUMAN	chloride intracellular channel 4	38	Required for insertion into the membrane (Probable).|Helical; Note=After insertion into the membrane; (Potential).				cellular response to calcium ion|establishment or maintenance of apical/basal cell polarity|keratinocyte differentiation|negative regulation of cell migration|regulation of cytoskeleton organization	actin cytoskeleton|apical part of cell|cell surface|cell-cell junction|centrosome|chloride channel complex|cytoplasmic vesicle membrane|cytosol|microvillus|midbody|mitochondrion|nuclear matrix|perinuclear region of cytoplasm|soluble fraction	voltage-gated chloride channel activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000778)|all_lung(284;0.00106)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0479)|OV - Ovarian serous cystadenocarcinoma(117;1.06e-24)|Colorectal(126;1.03e-07)|COAD - Colon adenocarcinoma(152;4.93e-06)|STAD - Stomach adenocarcinoma(196;0.000418)|GBM - Glioblastoma multiforme(114;0.000451)|BRCA - Breast invasive adenocarcinoma(304;0.00215)|KIRC - Kidney renal clear cell carcinoma(1967;0.00216)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.18)		TGCCCCTTTTCCCAGAGGCTC	0.408													26	52					0	0	0.010818	0	0
ARID1A	8289	broad.mit.edu	37	1	27106648	27106649	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:27106648_27106649GG>AA	uc001bmv.1	+	20	6632_6633	c.6259_6260GG>AA	c.(6259-6261)GGA>AAA	p.G2087K	ARID1A_uc001bmu.1_Missense_Mutation_p.G1870K|ARID1A_uc001bmx.1_Missense_Mutation_p.G933K|ARID1A_uc009vsm.1_Missense_Mutation_p.G415K|ARID1A_uc009vsn.1_Missense_Mutation_p.G329K	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2087	LXXLL.				androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TGTCCTGGACGGACTCCTACAC	0.589			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								38	52					0	0	0.004672	0	0
ZDHHC18	84243	broad.mit.edu	37	1	27158942	27158943	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:27158942_27158943CC>TT	uc001bnb.2	+	2	435_436	c.340_341CC>TT	c.(340-342)CCC>TTC	p.P114F	ZDHHC18_uc010ofh.1_5'UTR	NM_032283	NP_115659	Q9NUE0	ZDH18_HUMAN	zinc finger, DHHC-type containing 18	114						integral to membrane	zinc ion binding				0		all_cancers(24;5.82e-22)|all_epithelial(13;9.91e-20)|Colorectal(325;0.000147)|Breast(348;0.000706)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;5.71e-53)|Epithelial(14;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(117;1.53e-29)|Colorectal(126;1.9e-09)|COAD - Colon adenocarcinoma(152;4.2e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000548)|STAD - Stomach adenocarcinoma(196;0.00065)|KIRC - Kidney renal clear cell carcinoma(1967;0.000779)|GBM - Glioblastoma multiforme(114;0.0265)|READ - Rectum adenocarcinoma(331;0.0455)|Lung(427;0.163)|LUSC - Lung squamous cell carcinoma(448;0.237)		TTCTAGCTGTCCCTACCTGGCT	0.589													79	146					0	0	0.004672	0	0
WASF2	10163	broad.mit.edu	37	1	27736314	27736314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:27736314G>A	uc001bof.1	-	8	1427	c.1211C>T	c.(1210-1212)CCT>CTT	p.P404L	WASF2_uc010ofl.1_Intron	NM_006990	NP_008921	Q9Y6W5	WASF2_HUMAN	WAS protein family, member 2	404	Poly-Pro.				actin cytoskeleton organization|G-protein signaling, coupled to cAMP nucleotide second messenger	actin cytoskeleton|lamellipodium	actin binding			skin(2)|ovary(1)	3		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0446)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.7e-08)|COAD - Colon adenocarcinoma(152;2e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00139)|KIRC - Kidney renal clear cell carcinoma(1967;0.00204)|STAD - Stomach adenocarcinoma(196;0.00325)|READ - Rectum adenocarcinoma(331;0.0481)		GAAAGGGGGAGGAGGGGGCCC	0.537													21	23					0	0	0.010504	0	0
EPB41	2035	broad.mit.edu	37	1	29438901	29438901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:29438901G>A	uc001brm.1	+	18	2444	c.2437G>A	c.(2437-2439)GAG>AAG	p.E813K	EPB41_uc001brg.1_Missense_Mutation_p.E590K|EPB41_uc001brh.1_Missense_Mutation_p.E537K|EPB41_uc001bri.1_Missense_Mutation_p.E724K|EPB41_uc001brj.1_Missense_Mutation_p.E550K|EPB41_uc001brl.1_Missense_Mutation_p.E780K|EPB41_uc009vtl.1_Missense_Mutation_p.E507K|EPB41_uc009vtm.1_Missense_Mutation_p.E392K|EPB41_uc009vtn.1_RNA	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	813	Carboxyl-terminal (CTD).				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		TGGGATTTCAGAGACACGTAT	0.383													43	62					0	0	0.014410	0	0
PTPRU	10076	broad.mit.edu	37	1	29611349	29611349	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:29611349C>T	uc001bru.2	+	14	2396	c.2286C>T	c.(2284-2286)CTC>CTT	p.L762L	PTPRU_uc001brv.2_Silent_p.L762L|PTPRU_uc001brw.2_Silent_p.L762L|PTPRU_uc009vtq.2_Silent_p.L762L|PTPRU_uc009vtr.2_Silent_p.L762L	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	762	Helical; (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TCATCCTTCTCCTGGGTGCCA	0.607													24	26					0	0	0.003330	0	0
ZBTB8A	653121	broad.mit.edu	37	1	33060667	33060668	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:33060667_33060668GG>AA	uc001bvn.2	+	4	1321_1322	c.836_837GG>AA	c.(835-837)CGG>CAA	p.R279Q	ZBTB8A_uc001bvk.2_RNA|ZBTB8A_uc001bvm.2_Missense_Mutation_p.R279Q	NM_001040441	NP_001035531	Q96BR9	ZBT8A_HUMAN	zinc finger and BTB domain containing 8A	279					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATCTGCCTCGGATGCGATTCA	0.45													18	28					0	0	0.004672	0	0
STK40	83931	broad.mit.edu	37	1	36820960	36820960	+	Silent	SNP	G	A	A	rs145709842	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:36820960G>A	uc001cak.1	-	6	824	c.417C>T	c.(415-417)CTC>CTT	p.L139L	STK40_uc001cal.1_Silent_p.L144L|STK40_uc001cam.1_Silent_p.L139L|STK40_uc009vva.1_Silent_p.L139L|STK40_uc001can.1_Silent_p.L139L	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	139	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				AGTCCAGGACGAGGCAGATGC	0.567													82	180					0	0	0.014410	0	0
STK40	83931	broad.mit.edu	37	1	36821031	36821032	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:36821031_36821032GG>AA	uc001cak.1	-	6	752_753	c.345_346CC>TT	c.(343-348)GACCGC>GATTGC	p.R116C	STK40_uc001cal.1_Missense_Mutation_p.R121C|STK40_uc001cam.1_Missense_Mutation_p.R116C|STK40_uc009vva.1_Missense_Mutation_p.R116C|STK40_uc001can.1_Missense_Mutation_p.R116C	NM_032017	NP_114406	Q8N2I9	STK40_HUMAN	serine/threonine kinase 40	116	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)				TCACAGGTGCGGTCCTGGGAGG	0.436													46	88					0	0	0.004672	0	0
INPP5B	3633	broad.mit.edu	37	1	38330081	38330081	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:38330081G>A	uc001ccg.1	-	23	2623	c.2529C>T	c.(2527-2529)CTC>CTT	p.L843L	INPP5B_uc009vvk.1_Intron|INPP5B_uc001ccf.1_Silent_p.L679L	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	923	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GGAATATGGGGAGAGTAGAAA	0.378													6	15					0	0	0.001984	0	0
KDM4A	9682	broad.mit.edu	37	1	44149373	44149373	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:44149373T>G	uc001cjx.2	+	12	1919	c.1753T>G	c.(1753-1755)TTT>GTT	p.F585V	KDM4A_uc010oki.1_Intron	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	585					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						TGAATACATGTTTTCCCTAGA	0.473													36	52					0	0	0.006230	0	0
B4GALT2	8704	broad.mit.edu	37	1	44450559	44450559	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:44450559G>A	uc001clg.2	+	4	942	c.572G>A	c.(571-573)CGG>CAG	p.R191Q	B4GALT2_uc001clh.2_Missense_Mutation_p.R125Q|B4GALT2_uc010okl.1_Missense_Mutation_p.R220Q|B4GALT2_uc001cli.2_Missense_Mutation_p.R191Q	NM_003780	NP_003771	O60909	B4GT2_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	191	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|lactose synthase activity|metal ion binding|N-acetyllactosamine synthase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			N-Acetyl-D-glucosamine(DB00141)	ACCTTCAACCGGGCCAAGCTG	0.592													19	40					0	0	0.012319	0	0
DMBX1	127343	broad.mit.edu	37	1	46976783	46976783	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:46976783C>T	uc001cpx.2	+	3	540	c.525C>T	c.(523-525)CCC>CCT	p.P175P	DMBX1_uc001cpw.2_Silent_p.P170P	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	175					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCAGCGACCCCCCTGCTGAGC	0.677													39	57					0	0	0.008740	0	0
STIL	6491	broad.mit.edu	37	1	47746767	47746767	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:47746767A>T	uc001crc.1	-	12	1518	c.1363T>A	c.(1363-1365)TTG>ATG	p.L455M	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.L408M|STIL_uc010omo.1_Missense_Mutation_p.L455M|STIL_uc001crd.1_Missense_Mutation_p.L455M|STIL_uc001cre.1_Missense_Mutation_p.L455M|STIL_uc001crf.1_Missense_Mutation_p.L68M|STIL_uc001crg.1_Missense_Mutation_p.L408M	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	455					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TGGTTAATCAAAGGAGGATTT	0.423													54	135					0	0	0.014410	0	0
FAF1	11124	broad.mit.edu	37	1	51425473	51425473	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:51425473T>C	uc009vyx.1	-	2	74	c.11A>G	c.(10-12)AAC>AGC	p.N4S	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Missense_Mutation_p.N4S	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	4					apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity	p.0?(3)		ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		CCGGTCCATGTTGGACGCCAT	0.582													14	30					0	0	0.006122	0	0
DMRTB1	63948	broad.mit.edu	37	1	53925647	53925647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:53925647C>T	uc001cvq.1	+	1	576	c.521C>T	c.(520-522)CCC>CTC	p.P174L		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	174	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TACCCTGGCCCCCTAGACCTG	0.716													6	8					0	0	0.003080	0	0
TMEM59	9528	broad.mit.edu	37	1	54512978	54512978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:54512978C>T	uc001cwp.2	-	2	507	c.257G>A	c.(256-258)GGA>GAA	p.G86E	TMEM59_uc001cwn.2_5'Flank|TMEM59_uc001cwo.2_5'UTR|TMEM59_uc001cwq.2_Missense_Mutation_p.G86E|TMEM59_uc001cwr.2_Intron|TMEM59_uc001cws.1_Missense_Mutation_p.G97E	NM_004872	NP_004863	Q9BXS4	TMM59_HUMAN	thymic dendritic cell-derived factor 1	86	Extracellular (Potential).					Golgi membrane|integral to membrane					0						TAAGTCAATTCCATCATCCAC	0.388													27	37					0	0	0.007291	0	0
DAB1	1600	broad.mit.edu	37	1	57481073	57481073	+	Silent	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:57481073G>T	uc001cys.1	-	14	1601	c.927C>A	c.(925-927)TCC>TCA	p.S309S	DAB1_uc001cyt.1_Silent_p.S307S|DAB1_uc001cyq.1_Silent_p.S307S|DAB1_uc001cyr.1_Silent_p.S223S|DAB1_uc009vzw.1_Silent_p.S291S|DAB1_uc009vzx.1_Silent_p.S309S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	342					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GACCCCAGAAGGACGGGAGGA	0.607													18	45					1.45105e-14	1.48774e-14	0.006122	1	0
MYSM1	114803	broad.mit.edu	37	1	59147533	59147533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:59147533G>A	uc009wab.1	-	8	1206	c.1183C>T	c.(1183-1185)CCT>TCT	p.P395S	MYSM1_uc001czc.2_RNA	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1	395	SWIRM.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					AAAAACTCAGGAATTGCTTGT	0.338													29	37					0	0	0.006320	0	0
HOOK1	51361	broad.mit.edu	37	1	60324130	60324130	+	Missense_Mutation	SNP	G	A	A	rs114487303	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:60324130G>A	uc009wad.2	+	14	1375	c.1273G>A	c.(1273-1275)GAA>AAA	p.E425K	HOOK1_uc001czo.2_Missense_Mutation_p.E425K|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.E383K	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	425	Potential.|Sufficient for interaction with microtubules.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					TACTTTGAAAGAAACAAATGA	0.294													25	47					0	0	0.003954	0	0
NFIA	4774	broad.mit.edu	37	1	61554268	61554268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:61554268C>T	uc001czw.2	+	2	959	c.475C>T	c.(475-477)CCA>TCA	p.P159S	NFIA_uc001czy.2_Missense_Mutation_p.P151S|NFIA_uc010oos.1_Missense_Mutation_p.P204S|NFIA_uc001czv.2_Missense_Mutation_p.P159S	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	159	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						ATGCTCTAATCCAGGGCTCTG	0.463													46	89					0	0	0.014410	0	0
KANK4	163782	broad.mit.edu	37	1	62740442	62740442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:62740442G>A	uc001dah.3	-	3	711	c.334C>T	c.(334-336)CTT>TTT	p.L112F	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	112										ovary(3)|skin(2)|lung(1)	6						GCATTACCAAGCGGTGGTGAC	0.627													14	52					0	0	0.003954	0	0
SGIP1	84251	broad.mit.edu	37	1	67091554	67091554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:67091554C>T	uc001dcr.2	+	2	252	c.35C>T	c.(34-36)GCC>GTC	p.A12V	hsa-mir-3117|MI0014130_5'Flank	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	12					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						ACAAGGAAGGCCTTTGGAATA	0.393													28	53					0	0	0.003271	0	0
SGIP1	84251	broad.mit.edu	37	1	67147864	67147864	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:67147864T>C	uc001dcr.2	+	15	1344	c.1127T>C	c.(1126-1128)TTA>TCA	p.L376S	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.L143S	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	376	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						CCGCTCAATTTAGAAGAAGTC	0.537													73	111					0	0	0.014410	0	0
LPHN2	23266	broad.mit.edu	37	1	82450271	82450271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:82450271G>A	uc001dit.3	+	19	3417	c.3236G>A	c.(3235-3237)CGA>CAA	p.R1079Q	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R1079Q|LPHN2_uc001div.2_Missense_Mutation_p.R1079Q|LPHN2_uc009wcd.2_Missense_Mutation_p.R1079Q|LPHN2_uc001diw.2_Missense_Mutation_p.R663Q	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1092	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ATGCAGGTACGAAAAGAATAT	0.423													42	80					0	0	0.010771	0	0
GBP5	115362	broad.mit.edu	37	1	89732744	89732745	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:89732744_89732745GG>AA	uc001dnc.2	-	6	1057_1058	c.520_521CC>TT	c.(520-522)CCA>TTA	p.P174L	GBP5_uc001dnd.2_Missense_Mutation_p.P174L|GBP5_uc001dne.1_Missense_Mutation_p.P174L	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	174						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		CACTAAGTCTGGGAAGAAGCTC	0.49													49	97					0	0	0.004672	0	0
LRRC8B	23507	broad.mit.edu	37	1	90050181	90050181	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:90050181C>T	uc001dni.2	+	7	2479	c.1972C>T	c.(1972-1974)CTA>TTA	p.L658L	LRRC8B_uc001dnh.2_Silent_p.L658L|LRRC8B_uc001dnj.2_Silent_p.L658L	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	658	LRR 9.					integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		ATTATCTAACCTAGAGCAGCT	0.378													49	113					0	0	0.014410	0	0
ABCA4	24	broad.mit.edu	37	1	94473190	94473190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:94473190C>T	uc001dqh.2	-	43	6109	c.6005G>A	c.(6004-6006)AGT>AAT	p.S2002N	ABCA4_uc001dqi.1_Missense_Mutation_p.S121N	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	2002	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGATACTCACCTCTTGCCTGC	0.557													28	67					0	0	0.006320	0	0
LPPR4	9890	broad.mit.edu	37	1	99771591	99771591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:99771591G>A	uc001dse.2	+	7	1423	c.1317G>A	c.(1315-1317)ATG>ATA	p.M439I	LPPR4_uc010oue.1_Missense_Mutation_p.M381I	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	439							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		ATGCCTCTATGGATTCCGCTC	0.493													34	54					0	0	0.005524	0	0
SLC25A24	29957	broad.mit.edu	37	1	108690945	108690945	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:108690945A>G	uc001dvn.3	-	7	1100	c.886T>C	c.(886-888)TCC>CCC	p.S296P	SLC25A24_uc001dvm.2_Missense_Mutation_p.S277P	NM_013386	NP_037518	Q6NUK1	SCMC1_HUMAN	solute carrier family 25 member 24 isoform 1	296	Solcar 2.|Helical; Name=3; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)	1		all_epithelial(167;3.72e-05)|all_lung(203;0.000567)|Lung NSC(277;0.0011)|Melanoma(281;0.211)		Colorectal(144;0.0345)|Lung(183;0.0971)|COAD - Colon adenocarcinoma(174;0.127)|Epithelial(280;0.134)		CCAGCCATGGAACCAGAAATA	0.333													43	92					0	0	0.013114	0	0
GPR61	83873	broad.mit.edu	37	1	110085755	110085755	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:110085755G>A	uc001dxy.2	+	2	794	c.111G>A	c.(109-111)CGG>CGA	p.R37R		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	37	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		TGGGGCTACGGGATGTTGCTT	0.612													28	54					0	0	0.005443	0	0
KCND3	3752	broad.mit.edu	37	1	112524979	112524979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:112524979G>A	uc001ebu.1	-	2	850	c.370C>T	c.(370-372)CTC>TTC	p.L124F	KCND3_uc001ebv.1_Missense_Mutation_p.L124F	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	124	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATCTCCGGGAGGATGCCGTAG	0.612													26	43					0	0	0.004656	0	0
PPM1J	333926	broad.mit.edu	37	1	113253642	113253642	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:113253642C>T	uc001ect.1	-	7	1125	c.1098G>A	c.(1096-1098)GGG>GGA	p.G366G	PPM1J_uc009wgl.1_RNA|PPM1J_uc001ecs.1_Silent_p.G160G	NM_005167	NP_005158	Q5JR12	PPM1J_HUMAN	protein phosphatase 1J (PP2C domain containing)	366	PP2C-like.									breast(2)|central_nervous_system(1)	3	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTGCCCTCCCCACAGACCA	0.572													154	335					0	0	0.014410	0	0
MAGI3	260425	broad.mit.edu	37	1	114193690	114193690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:114193690C>T	uc001edk.2	+	14	2483	c.2302C>T	c.(2302-2304)CGC>TGC	p.R768C	MAGI3_uc001edh.3_Missense_Mutation_p.R793C|MAGI3_uc001edi.3_Missense_Mutation_p.R768C|MAGI3_uc010owm.1_Missense_Mutation_p.R793C|MAGI3_uc001edj.2_Missense_Mutation_p.R489C	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	793	Interaction with BAI1.|PDZ 4.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding	p.R768L(1)		lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGTCGGCTCCGCGCAGCTGA	0.438													33	49					0	0	0.005524	0	0
PTPN22	26191	broad.mit.edu	37	1	114372627	114372627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:114372627G>A	uc001eds.2	-	17	2208	c.2078C>T	c.(2077-2079)CCC>CTC	p.P693L	PTPN22_uc009wgq.2_Missense_Mutation_p.P638L|PTPN22_uc010owo.1_Missense_Mutation_p.P449L|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P693L|PTPN22_uc009wgs.2_Missense_Mutation_p.P566L	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	693					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AGGAGGTGGGGGAGAAGAACG	0.363													22	26					0	0	0.004656	0	0
BCL2L15	440603	broad.mit.edu	37	1	114423762	114423762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:114423762C>T	uc001edw.2	-	4	647	c.475G>A	c.(475-477)GAA>AAA	p.E159K	uc001edv.1_Intron|BCL2L15_uc001edx.2_Missense_Mutation_p.E84K|BCL2L15_uc001edy.2_RNA	NM_001010922	NP_001010922	Q5TBC7	B2L15_HUMAN	pro-apoptotic Bcl-2 protein	159					apoptosis					ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.95e-08)|all_epithelial(167;9.95e-08)|all_lung(203;1.31e-05)|Lung NSC(69;2.46e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCAGATTTTCCTAGGGAAGA	0.418													19	51					0	0	0.012319	0	0
AMPD1	270	broad.mit.edu	37	1	115218214	115218214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:115218214G>A	uc001efe.1	-	12	1700	c.1616C>T	c.(1615-1617)CCA>CTA	p.P539L	AMPD1_uc001eff.1_Missense_Mutation_p.P535L	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	539					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	AGTGTAAGATGGATTCTTTTC	0.468													56	87					0	0	0.014410	0	0
CSDE1	7812	broad.mit.edu	37	1	115276669	115276670	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:115276669_115276670CC>TT	uc001efk.2	-	8	1117_1118	c.651_652GG>AA	c.(649-654)AAGGGT>AAAAGT	p.G218S	CSDE1_uc001efi.2_Missense_Mutation_p.G264S|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Missense_Mutation_p.G187S|CSDE1_uc001efm.2_Missense_Mutation_p.G233S|CSDE1_uc009wgv.2_Missense_Mutation_p.G218S|CSDE1_uc001efn.2_Missense_Mutation_p.G187S	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	218	CSD 3.				male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCTAAGTCACCCTTAAATTCAC	0.351													25	47					0	0	0.004672	0	0
C1orf161	126868	broad.mit.edu	37	1	116666729	116666729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:116666729G>A	uc001egc.1	+	4	497	c.232G>A	c.(232-234)GGC>AGC	p.G78S		NM_152367	NP_689580	Q8N8X9	MB213_HUMAN	hypothetical protein LOC126868	78											0	Lung SC(450;0.184)	all_cancers(81;0.00142)|all_lung(203;0.000139)|all_epithelial(167;0.000401)|Lung NSC(69;0.000705)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CCCAATAAAAGGCCTGGCCGG	0.582													47	68					0	0	0.014410	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144946721	144946721	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:144946721C>T	uc001elw.3	-	5	831	c.540G>A	c.(538-540)CAG>CAA	p.Q180Q	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.Q246Q|PDE4DIP_uc001emc.1_Silent_p.Q180Q|PDE4DIP_uc001emd.1_Silent_p.Q180Q	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	180	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CAGCCAGGCTCTGATTCAGTT	0.423			T	PDGFRB	MPD								17	133					0	0	0.007413	0	0
CA14	23632	broad.mit.edu	37	1	150234998	150234998	+	Silent	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:150234998T>G	uc001etx.2	+	5	783	c.474T>G	c.(472-474)GCT>GCG	p.A158A		NM_012113	NP_036245	Q9ULX7	CAH14_HUMAN	carbonic anhydrase XIV precursor	158	Extracellular (Potential).					integral to membrane	carbonate dehydratase activity|metal ion binding			ovary(1)	1	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGGCCTGGCTGTCCTGGGCA	0.512													38	44					0	0	0.005524	0	0
CGN	57530	broad.mit.edu	37	1	151491260	151491260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:151491260G>A	uc009wmw.2	+	2	409	c.265G>A	c.(265-267)GGG>AGG	p.G89R		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	83	Head.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			CAATGACCAAGGGGCCTCAGG	0.582													12	28					0	0	0.010729	0	0
LINGO4	339398	broad.mit.edu	37	1	151773494	151773494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:151773494G>A	uc001ezf.1	-	2	1877	c.1687C>T	c.(1687-1689)CGG>TGG	p.R563W		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	563	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGTTTGACCCGACCTTTGCCC	0.567													39	102					0	0	0.008740	0	0
RPTN	126638	broad.mit.edu	37	1	152127305	152127305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:152127305C>T	uc001ezs.1	-	3	2335	c.2270G>A	c.(2269-2271)CGA>CAA	p.R757Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	757	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TTGCCTGTCTCGTCTCTGATG	0.512													172	310					0	0	0.014410	0	0
LCE1D	353134	broad.mit.edu	37	1	152770517	152770517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:152770517C>T	uc009wnp.2	+	2	290	c.247C>T	c.(247-249)CGT>TGT	p.R83C		NM_178352	NP_848129	Q5T752	LCE1D_HUMAN	late cornified envelope 1D	83	Cys-rich.				cellular response to calcium ion|keratinization	cornified envelope|perinuclear region of cytoplasm					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGGTCCCACCGTCGCAGACC	0.706													22	16					0	0	0.010504	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153309716	153309716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:153309716G>A	uc001fbo.2	-	8	949	c.884C>T	c.(883-885)TCC>TTC	p.S295F	PGLYRP4_uc001fbp.2_Missense_Mutation_p.S291F	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	295	Interaction with murein.				defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGGGTGGAGGAGCCTTGGAC	0.542													29	36					0	0	0.007291	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155931579	155931579	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:155931579G>T	uc001fmt.2	-	11	1459	c.1341C>A	c.(1339-1341)AAC>AAA	p.N447K	ARHGEF2_uc001fmr.2_Missense_Mutation_p.N419K|ARHGEF2_uc001fms.2_Missense_Mutation_p.N446K|ARHGEF2_uc001fmu.2_Missense_Mutation_p.N491K|ARHGEF2_uc010pgt.1_Missense_Mutation_p.N420K|ARHGEF2_uc010pgu.1_Missense_Mutation_p.N492K	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	447					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGTCCATGCGGTTGTAGATCT	0.597													19	43					4.35082e-09	4.44381e-09	0.010504	1	0
BCAN	63827	broad.mit.edu	37	1	156626126	156626126	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:156626126G>A	uc001fpp.2	+	9	2331	c.1995G>A	c.(1993-1995)GAG>GAA	p.E665E		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	665	EGF-like.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGGAGGAGGAGGAAGGGGTCC	0.647													40	91					0	0	0.008740	0	0
NTRK1	4914	broad.mit.edu	37	1	156849841	156849841	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:156849841C>T	uc001fqh.1	+	16	2153	c.2097C>T	c.(2095-2097)ATC>ATT	p.I699I	NTRK1_uc001fqf.1_Silent_p.I663I|NTRK1_uc009wsi.1_Silent_p.I398I|NTRK1_uc001fqi.1_Silent_p.I693I|NTRK1_uc009wsk.1_Silent_p.I696I	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	699	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CCGAGAGCATCCTGTACCGTA	0.647			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			22	53					0	0	0.014323	0	0
FCRL3	115352	broad.mit.edu	37	1	157669493	157669493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:157669493C>T	uc001frb.2	-	3	333	c.41G>A	c.(40-42)AGA>AAA	p.R14K	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.R14K|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'Flank|FCRL3_uc001frc.1_Missense_Mutation_p.R14K	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	14						integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TGATTGTTCTCTTCCAGGAGC	0.478													7	15					0	0	0.003080	0	0
CD1E	913	broad.mit.edu	37	1	158324289	158324289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:158324289G>A	uc001fse.2	+	2	420	c.181G>A	c.(181-183)GAC>AAC	p.D61N	CD1E_uc010pid.1_Missense_Mutation_p.D59N|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.D61N|CD1E_uc001fsk.2_Missense_Mutation_p.D61N|CD1E_uc001fsj.2_Missense_Mutation_p.D61N|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.D61N|CD1E_uc001fry.2_Missense_Mutation_p.D61N|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.D61N|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Missense_Mutation_p.D61N|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	61					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					ATGGCTGGGTGACCTGCAGAC	0.557													34	50					0	0	0.003755	0	0
OR10T2	128360	broad.mit.edu	37	1	158368890	158368890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:158368890G>A	uc010pih.1	-	1	367	c.367C>T	c.(367-369)CGC>TGC	p.R123C		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					GCTACATAGCGATCATATCCC	0.478													41	97					0	0	0.006999	0	0
SPTA1	6708	broad.mit.edu	37	1	158653284	158653284	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:158653284C>T	uc001fst.1	-	3	466	c.267G>A	c.(265-267)GGG>GGA	p.G89G		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	89	Spectrin 2.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTGATATTTCCCCTAAAGTT	0.398													32	51					0	0	0.010818	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011221	160011221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:160011221C>T	uc001fuw.1	-	2	1252	c.1102G>A	c.(1102-1104)GAG>AAG	p.E368K		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	368	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GCACTGCCCTCCTTCTCAGCT	0.542													10	28					0	0	0.006214	0	0
ATP1A2	477	broad.mit.edu	37	1	160106050	160106050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:160106050C>T	uc001fvc.2	+	18	2585	c.2453C>T	c.(2452-2454)TCC>TTC	p.S818F	ATP1A2_uc001fvb.2_Missense_Mutation_p.S818F|ATP1A2_uc001fvd.2_Missense_Mutation_p.S554F	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	818	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCTGCCATCTCCTTGGCCTAT	0.547													27	65					0	0	0.005443	0	0
ATP1A4	480	broad.mit.edu	37	1	160124954	160124954	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:160124954C>T	uc001fve.3	+	3	806	c.327C>T	c.(325-327)TCC>TCT	p.S109S	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	109	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GAGGCTTCTCCCTCCTACTAT	0.502													26	28					0	0	0.003954	0	0
SLAMF6	114836	broad.mit.edu	37	1	160465994	160465994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:160465994G>A	uc001fwe.1	-	2	299	c.239C>T	c.(238-240)CCG>CTG	p.P80L	SLAMF6_uc001fwd.1_Missense_Mutation_p.P80L|SLAMF6_uc010pjh.1_Missense_Mutation_p.P31L|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Missense_Mutation_p.P31L	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	80	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			TCCCTGTTTCGGATTAGTCAC	0.468													52	66					0	0	0.014410	0	0
B4GALT3	8703	broad.mit.edu	37	1	161145604	161145604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:161145604G>A	uc001fyq.1	-	3	509	c.247C>T	c.(247-249)CTC>TTC	p.L83F	PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_Intron|B4GALT3_uc001fyo.1_5'Flank|B4GALT3_uc001fyp.1_5'Flank|B4GALT3_uc001fyr.1_Missense_Mutation_p.L83F|B4GALT3_uc001fys.1_Missense_Mutation_p.L83F|B4GALT3_uc009wud.1_Missense_Mutation_p.L83F	NM_003779	NP_003770	O60512	B4GT3_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	83	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity|metal ion binding|N-acetyllactosamine synthase activity				0	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)		N-Acetyl-D-glucosamine(DB00141)	TTACCTAAGAGAGGAGATCGT	0.582													86	137					0	0	0.014410	0	0
UAP1	6675	broad.mit.edu	37	1	162567609	162567610	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:162567609_162567610CC>TT	uc001gce.3	+	9	1715_1716	c.1386_1387CC>TT	c.(1384-1389)ATCCAA>ATTTAA	p.Q463*		NM_003115	NP_003106	Q16222	UAP1_HUMAN	UDP-N-acetylglucosamine pyrophosphorylase 1	480					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol|nucleus|plasma membrane	UDP-N-acetylglucosamine diphosphorylase activity			ovary(2)|skin(2)|kidney(1)	5	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			ATGTACCAATCCAATGTGAAAT	0.327													38	90					0	0	0.004672	0	0
DUSP27	92235	broad.mit.edu	37	1	167097200	167097201	+	Missense_Mutation	DNP	GG	AA	AA	rs149238405		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:167097200_167097201GG>AA	uc001geb.1	+	5	2832_2833	c.2832_2833GG>AA	c.(2830-2835)ACGGAG>ACAAAG	p.E945K		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	945	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GCCTCAGGACGGAGGAAAAACC	0.505													16	28					0	0	0.004672	0	0
ADCY10	55811	broad.mit.edu	37	1	167849779	167849779	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:167849779C>T	uc001ger.2	-	10	1387	c.1089G>A	c.(1087-1089)CTG>CTA	p.L363L	ADCY10_uc009wvk.2_Silent_p.L271L|ADCY10_uc010plj.1_Silent_p.L210L|ADCY10_uc009wvl.2_Silent_p.L362L|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	363	Guanylate cyclase 2.				intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TAGCACATTCCAGAGCATGAG	0.522													29	51					0	0	0.007291	0	0
TBX19	9095	broad.mit.edu	37	1	168274388	168274388	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:168274388G>A	uc001gfl.2	+	6	921	c.870G>A	c.(868-870)CAG>CAA	p.Q290Q	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	290					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GACACCGGCAGGCTCCCTACC	0.587													41	91					0	0	0.014410	0	0
TBX19	9095	broad.mit.edu	37	1	168274397	168274397	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:168274397C>T	uc001gfl.2	+	6	930	c.879C>T	c.(877-879)TAC>TAT	p.Y293Y	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	293					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					AGGCTCCCTACCCTTCTGCGT	0.582													38	93					0	0	0.011902	0	0
NME7	29922	broad.mit.edu	37	1	169293677	169293677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:169293677C>T	uc001gfu.2	-	2	303	c.65G>A	c.(64-66)CGA>CAA	p.R22Q	NME7_uc010plq.1_RNA|NME7_uc001gft.2_5'UTR|NME7_uc001gfv.1_Missense_Mutation_p.R22Q	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	22	DM10.				CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					CTCATAACGTCGAAGAAGTGA	0.378													14	39					0	0	0.004007	0	0
SELP	6403	broad.mit.edu	37	1	169572414	169572414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:169572414C>T	uc001ggi.3	-	10	1620	c.1555G>A	c.(1555-1557)GGA>AGA	p.G519R	SELP_uc001ggh.2_Missense_Mutation_p.G354R|SELP_uc009wvr.2_Missense_Mutation_p.G519R	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	519	Extracellular (Potential).|Sushi 6.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	GTCATTGTTCCATTCTGAGGG	0.423													42	86					0	0	0.013114	0	0
SELL	6402	broad.mit.edu	37	1	169677600	169677600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:169677600C>T	uc001ggk.2	-	3	628	c.430G>A	c.(430-432)GAT>AAT	p.D144N	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.D97N|SELL_uc001ggl.1_Missense_Mutation_p.D157N	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	144	C-type lectin.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					CAGGCGTCATCGTTCCATTTG	0.512													42	54					0	0	0.007835	0	0
C1orf9	51430	broad.mit.edu	37	1	172544683	172544683	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:172544683C>T	uc001giq.3	+	11	1499	c.1183C>T	c.(1183-1185)CTG>TTG	p.L395L	C1orf9_uc010pmm.1_Silent_p.L395L|C1orf9_uc009wwd.2_Silent_p.L358L|C1orf9_uc010pmn.1_Silent_p.L358L|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	395	SUN.				multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		GTGGATTAAGCTGGGTACTTT	0.299													18	26					0	0	0.010504	0	0
TNN	63923	broad.mit.edu	37	1	175086135	175086135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:175086135C>T	uc001gkl.1	+	10	2293	c.2180C>T	c.(2179-2181)TCC>TTC	p.S727F		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	727	Fibronectin type-III 6.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCACTGTCTCCTGGGACCCG	0.547													45	98					0	0	0.014410	0	0
TNR	7143	broad.mit.edu	37	1	175335019	175335019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:175335019G>A	uc001gkp.1	-	9	2390	c.2309C>T	c.(2308-2310)GCT>GTT	p.A770V	TNR_uc009wwu.1_Missense_Mutation_p.A770V	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	770	Fibronectin type-III 5.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACCTGTGAAAGCATCCACAGT	0.512													33	60					0	0	0.004289	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738853	176738853	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:176738853C>T	uc001gkz.2	+	16	5598	c.4434C>T	c.(4432-4434)TCC>TCT	p.S1478S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1478	Sushi 2.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CAAACTTCTCCTGCTCAGAGG	0.522													59	94					0	0	0.014410	0	0
TOR3A	64222	broad.mit.edu	37	1	179052082	179052082	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:179052082C>T	uc001gmd.2	+	2	419	c.267C>T	c.(265-267)CGC>CGT	p.R89R	TOR3A_uc010pnd.1_5'UTR	NM_022371	NP_071766	Q9H497	TOR3A_HUMAN	torsin family 3, member A precursor	89					chaperone mediated protein folding requiring cofactor	endoplasmic reticulum	ATP binding			pancreas(1)	1						CAGGCTGGCGCCTTCCTCTGT	0.577													5	9					0	0	0.000602	0	0
C1orf125	126859	broad.mit.edu	37	1	179339203	179339203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:179339203G>A	uc001gmo.2	+	4	491	c.364G>A	c.(364-366)GGA>AGA	p.G122R	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_5'UTR|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.G122R	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	122											0						CTCCCTCACAGGAGCTGGAAG	0.438													16	20					0	0	0.003163	0	0
NMNAT2	23057	broad.mit.edu	37	1	183253165	183253165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:183253165G>A	uc001gqc.1	-	7	874	c.539C>T	c.(538-540)GCC>GTC	p.A180V	NMNAT2_uc001gqb.1_Missense_Mutation_p.A175V|NMNAT2_uc001gqd.2_Missense_Mutation_p.A75V	NM_015039	NP_055854	Q9BZQ4	NMNA2_HUMAN	nicotinamide mononucleotide adenylyltransferase	180					water-soluble vitamin metabolic process	Golgi membrane|nucleus	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity			skin(1)	1						GCCCAGATTGGCATTCTCATC	0.527													28	40					0	0	0.012213	0	0
NCF2	4688	broad.mit.edu	37	1	183536087	183536087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:183536087C>T	uc001gqj.3	-	9	1167	c.892G>A	c.(892-894)GAG>AAG	p.E298K	NCF2_uc010pod.1_Missense_Mutation_p.E253K|NCF2_uc010poe.1_Missense_Mutation_p.E217K|NCF2_uc001gqk.3_Missense_Mutation_p.E298K	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	298	SH3 1.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						ATCCGCAGCTCAACTGGTTCA	0.527													31	29					0	0	0.003755	0	0
PLA2G4A	5321	broad.mit.edu	37	1	186919842	186919842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:186919842G>A	uc001gsc.2	+	13	1523	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	PLA2G4A_uc010pos.1_Missense_Mutation_p.E380K	NM_024420	NP_077734	P47712	PA24A_HUMAN	cytosolic phospholipase A2, group IVA	440	PLA2c.				phospholipid catabolic process|platelet activating factor biosynthetic process|platelet activation	cytosol|endoplasmic reticulum membrane	calcium ion binding|calcium-dependent phospholipid binding|lysophospholipase activity			lung(2)|breast(1)	3					Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Medrysone(DB00253)|Quinacrine(DB01103)	CAGTGATGATGAATCACACGA	0.388													18	25					0	0	0.006122	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198492547	198492547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:198492547G>A	uc001gup.2	-	4	437	c.331C>T	c.(331-333)CAT>TAT	p.H111Y	ATP6V1G3_uc009wzd.2_Missense_Mutation_p.H117Y|ATP6V1G3_uc001guo.2_3'UTR	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	111					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TAGTTCACATGGATTTCTGGT	0.388													4	17					0	0	0.009096	0	0
PTPRC	5788	broad.mit.edu	37	1	198668772	198668772	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:198668772A>G	uc001gur.1	+	5	552	c.372A>G	c.(370-372)ACA>ACG	p.T124T	PTPRC_uc001gus.1_Silent_p.T124T|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Silent_p.T60T|PTPRC_uc009wzf.1_Silent_p.T60T|PTPRC_uc010ppg.1_Silent_p.T60T|PTPRC_uc001guu.1_Silent_p.T167T|PTPRC_uc001guv.1_RNA|PTPRC_uc001guw.1_RNA	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	124	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						ACACGCAGACATTCAGCGGCT	0.527											OREG0014061	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	102					0	0	0.014410	0	0
DDX59	83479	broad.mit.edu	37	1	200613540	200613540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:200613540C>T	uc009wzk.2	-	8	1945	c.1702G>A	c.(1702-1704)GGA>AGA	p.G568R	DDX59_uc010ppl.1_Intron	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	568	Helicase C-terminal.					intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AGAATGGATCCTGTGGGCTTT	0.378													50	104					0	0	0.014410	0	0
C1orf106	55765	broad.mit.edu	37	1	200867496	200867496	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:200867496C>T	uc001gvo.2	+	2	253	c.223C>T	c.(223-225)CTG>TTG	p.L75L	C1orf106_uc010ppm.1_5'UTR	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	75										skin(2)|ovary(1)	3						TCCCCCCTCCCTGCTCTGTGC	0.532													46	70					0	0	0.014410	0	0
KIF21B	23046	broad.mit.edu	37	1	200974769	200974769	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:200974769G>A	uc001gvs.1	-	4	818	c.501C>T	c.(499-501)ACC>ACT	p.T167T	KIF21B_uc001gvr.1_Silent_p.T167T|KIF21B_uc009wzl.1_Silent_p.T167T|KIF21B_uc010ppn.1_Silent_p.T167T|KIF21B_uc001gvt.1_5'UTR	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	167	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TGCGGTGGCGGGTGTCAGGGT	0.572													40	73					0	0	0.008740	0	0
CACNA1S	779	broad.mit.edu	37	1	201035038	201035039	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:201035038_201035039GG>AA	uc001gvv.2	-	22	3007_3008	c.2780_2781CC>TT	c.(2779-2781)ACC>ATT	p.T927I		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	927	III.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGTTCCCGATGGTGCTGATGGC	0.619													6	19					0	0	0.004672	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202411586	202411586	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:202411586T>G	uc001gya.1	+	12	1697	c.1553T>G	c.(1552-1554)GTT>GGT	p.V518G	PPP1R12B_uc001gxz.1_Missense_Mutation_p.V518G	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	518					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			GAATCAGCTGTTAATCTAGTG	0.448													31	47					0	0	0.004289	0	0
PRELP	5549	broad.mit.edu	37	1	203453084	203453085	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:203453084_203453085CC>TT	uc001gzs.2	+	2	972_973	c.772_773CC>TT	c.(772-774)CCT>TTT	p.P258F	PRELP_uc001gzt.2_Missense_Mutation_p.P258F	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	258	LRR 8.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			TGAGACCATCCCTAACGGATAC	0.515													54	84					0	0	0.004672	0	0
ATP2B4	493	broad.mit.edu	37	1	203667458	203667458	+	Missense_Mutation	SNP	C	T	T	rs148385288	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:203667458C>T	uc001gzw.2	+	3	1251	c.367C>T	c.(367-369)CGC>TGC	p.R123C	ATP2B4_uc001gzv.2_Missense_Mutation_p.R123C|ATP2B4_uc009xaq.2_Missense_Mutation_p.R123C	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	123	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GTCCTTTTATCGCCCTGCTGG	0.483													38	74					0	0	0.008740	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204438557	204438557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:204438557C>T	uc001haw.2	-	3	853	c.374G>A	c.(373-375)GGA>GAA	p.G125E	PIK3C2B_uc010pqv.1_Missense_Mutation_p.G125E|PIK3C2B_uc001hax.1_Missense_Mutation_p.G125E|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	125	Interaction with GRB2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GAGATAGTCTCCAGACAGGGA	0.567													18	23					0	0	0.004990	0	0
DYRK3	8444	broad.mit.edu	37	1	206811089	206811089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:206811089C>T	uc001hej.2	+	2	340	c.172C>T	c.(172-174)CCA>TCA	p.P58S	DYRK3_uc001hek.2_RNA|DYRK3_uc001hei.2_Missense_Mutation_p.P38S	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	58					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGAACCACCTCCACCCAGAAG	0.403													41	64					0	0	0.010771	0	0
PIGR	5284	broad.mit.edu	37	1	207110999	207110999	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:207110999C>T	uc001hez.2	-	4	670	c.486G>A	c.(484-486)AGG>AGA	p.R162R	PIGR_uc009xbz.2_Silent_p.R162R	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	162	Ig-like V-type 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ACAAGGACTTCCTCTTTTGAG	0.478													10	19					0	0	0.008291	0	0
USH2A	7399	broad.mit.edu	37	1	216371810	216371810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:216371810C>T	uc001hku.1	-	18	4315	c.3928G>A	c.(3928-3930)GAA>AAA	p.E1310K	USH2A_uc001hkv.2_Missense_Mutation_p.E1310K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1310	Fibronectin type-III 3.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGGCCGATTCTACAAATGAA	0.413										HNSCC(13;0.011)			44	77					0	0	0.011902	0	0
MARK1	4139	broad.mit.edu	37	1	220826538	220826538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:220826538G>A	uc001hmn.3	+	16	2429	c.1832G>A	c.(1831-1833)CGA>CAA	p.R611Q	MARK1_uc009xdw.2_Missense_Mutation_p.R612Q|MARK1_uc010pun.1_Missense_Mutation_p.R611Q|MARK1_uc001hmm.3_Missense_Mutation_p.R589Q	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	611					intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		AGCTCAAGCCGAAGCACTTTC	0.567													31	54					0	0	0.008361	0	0
DISP1	84976	broad.mit.edu	37	1	223116562	223116562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:223116562C>T	uc001hnu.1	+	2	544	c.397C>T	c.(397-399)CCT>TCT	p.P133S		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	133					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AAATCATTCACCTGTGTATCA	0.547													104	176					0	0	0.014410	0	0
TP53BP2	7159	broad.mit.edu	37	1	224002017	224002017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:224002017G>A	uc010pvb.1	-	3	506	c.214C>T	c.(214-216)CTT>TTT	p.L72F	TP53BP2_uc001hod.2_5'UTR	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	66					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		AATCGTTGAAGAACATCAAAC	0.418													46	82					0	0	0.014410	0	0
CNIH4	29097	broad.mit.edu	37	1	224553590	224553591	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:224553590_224553591CC>TT	uc001hom.1	+	3	180_181	c.148_149CC>TT	c.(148-150)CCA>TTA	p.P50L	CNIH4_uc001hon.1_RNA	NM_014184	NP_054903	Q9P003	CNIH4_HUMAN	cornichon homolog 4	50					intracellular signal transduction	endoplasmic reticulum|integral to membrane	protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.00341)		GTGGGTAATTCCAGAATTGATT	0.386													59	101					0	0	0.004672	0	0
TRIM17	51127	broad.mit.edu	37	1	228596894	228596894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:228596894C>T	uc001hsu.2	-	6	1247	c.862G>A	c.(862-864)GAA>AAA	p.E288K	TRIM11_uc001hss.2_5'Flank|TRIM11_uc010pvx.1_5'Flank|TRIM11_uc001hst.1_5'Flank|TRIM17_uc001hsv.2_Missense_Mutation_p.E288K|TRIM17_uc001hsw.2_Missense_Mutation_p.E261K|TRIM17_uc009xfb.2_Missense_Mutation_p.E288K	NM_016102	NP_057186	Q9Y577	TRI17_HUMAN	tripartite motif-containing 17 isoform 1	288	B30.2/SPRY.				protein autoubiquitination	intracellular	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Prostate(94;0.0724)				CTTAGCACTTCAATCTGTCCG	0.602													59	91					0	0	0.014410	0	0
CAPN9	10753	broad.mit.edu	37	1	230928633	230928633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:230928633C>T	uc001htz.1	+	17	1942	c.1829C>T	c.(1828-1830)ACC>ATC	p.T610I	CAPN9_uc009xfg.1_Missense_Mutation_p.T547I|CAPN9_uc001hua.1_Missense_Mutation_p.T584I	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	610	EF-hand 3.|2 (Potential).|Domain IV.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				AAGTCCGGCACCATGTCTACC	0.522													61	127					0	0	0.014410	0	0
TTC13	79573	broad.mit.edu	37	1	231056273	231056274	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:231056273_231056274GG>AA	uc001huf.3	-	17	1996_1997	c.1965_1966CC>TT	c.(1963-1968)GACCTT>GATTTT	p.L656F	TTC13_uc009xfi.2_Missense_Mutation_p.L603F|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.L603F|TTC13_uc009xfk.1_Missense_Mutation_p.L546F	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	656							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		ATCGGAAGAAGGTCTTCTACTT	0.386													28	62					0	0	0.004672	0	0
TARBP1	6894	broad.mit.edu	37	1	234563101	234563101	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:234563101G>A	uc001hwd.2	-	19	3285	c.3285C>T	c.(3283-3285)AAC>AAT	p.N1095N		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1095					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			CATGTCCAAGGTTTTCTATGA	0.303													17	23					0	0	0.007413	0	0
CHRM3	1131	broad.mit.edu	37	1	240071997	240071997	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:240071997G>C	uc001hyp.2	+	5	2025	c.1246G>C	c.(1246-1248)GAT>CAT	p.D416H		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	416	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	GAGCGTGGACGATGGAGGCAG	0.557													11	12					0	0	0.010729	0	0
FMN2	56776	broad.mit.edu	37	1	240374485	240374485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:240374485G>A	uc010pyd.1	+	6	4240	c.4015G>A	c.(4015-4017)GAG>AAG	p.E1339K	FMN2_uc010pye.1_Missense_Mutation_p.E1343K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1339	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGCTGTAAAGGAGAGAAAGAA	0.343													32	87					0	0	0.012213	0	0
FMN2	56776	broad.mit.edu	37	1	240555833	240555833	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:240555833G>A	uc010pyd.1	+	15	5106	c.4881G>A	c.(4879-4881)GAG>GAA	p.E1627E	FMN2_uc010pye.1_Silent_p.E1631E|FMN2_uc010pyf.1_Silent_p.E242E|FMN2_uc010pyg.1_Silent_p.E223E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1627	FH2.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGAGGCAGAGGAAAATTCAC	0.348													25	50					0	0	0.010818	0	0
RGS7	6000	broad.mit.edu	37	1	240977012	240977012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:240977012C>T	uc001hyv.2	-	13	1192	c.862G>A	c.(862-864)GAA>AAA	p.E288K	RGS7_uc010pyh.1_Missense_Mutation_p.E262K|RGS7_uc010pyj.1_Missense_Mutation_p.E204K|RGS7_uc001hyu.2_Missense_Mutation_p.E288K|RGS7_uc009xgn.1_Missense_Mutation_p.E235K|RGS7_uc001hyw.2_Missense_Mutation_p.E288K|RGS7_uc001hyt.2_Missense_Mutation_p.E120K	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	288	G protein gamma.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AAATACTGTTCCGTGTAACTT	0.428													24	30					0	0	0.002780	0	0
OR2G3	81469	broad.mit.edu	37	1	247769793	247769793	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:247769793G>A	uc010pyz.1	+	1	906	c.906G>A	c.(904-906)AGG>AGA	p.R302R		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGGCTCTGAGGAAACTTCTCT	0.393													43	63					0	0	0.011902	0	0
OR13G1	441933	broad.mit.edu	37	1	247836067	247836067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:247836067C>T	uc001idi.1	-	1	277	c.277G>A	c.(277-279)GGC>AGC	p.G93S		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			GACATGCAGCCTGCATATGAA	0.493													15	20					0	0	0.002450	0	0
OR1C1	26188	broad.mit.edu	37	1	247921544	247921544	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:247921544G>A	uc010pza.1	-	1	165	c.165C>T	c.(163-165)CTC>CTT	p.L55L		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TAGGGGAATGGAGGTGAGAGT	0.473													15	19					0	0	0.003163	0	0
OR2M5	127059	broad.mit.edu	37	1	248308615	248308615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:248308615C>T	uc010pze.1	+	1	166	c.166C>T	c.(166-168)CAC>TAC	p.H56Y		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CACCCAGCTCCACACCCCCAT	0.527													125	267					0	0	0.014410	0	0
OR2T12	127064	broad.mit.edu	37	1	248458252	248458252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:248458252G>A	uc010pzj.1	-	1	629	c.629C>T	c.(628-630)TCC>TTC	p.S210F		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			CAGGATGAGGGAAAAGGGGAC	0.547													36	75					0	0	0.004878	0	0
OR2T2	401992	broad.mit.edu	37	1	248616309	248616309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr1:248616309G>A	uc001iek.1	+	1	211	c.211G>A	c.(211-213)GAT>AAT	p.D71N		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCCATCATGGATACCATCTA	0.517													32	175					0	0	0.009718	0	0
C10orf111	221060	broad.mit.edu	37	10	15138497	15138497	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:15138497C>T	uc001inw.2	-	2	601	c.327G>A	c.(325-327)CAG>CAA	p.Q109Q	RPP38_uc001iny.3_5'Flank|RPP38_uc009xjm.2_5'Flank|RPP38_uc001inx.3_5'Flank	NM_153244	NP_694976	Q8N326	CJ111_HUMAN	hypothetical protein LOC221060	109						integral to membrane					0						CAGAAGCAACCTGCCGTCTTC	0.498													31	40					0	0	0.008361	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24884069	24884069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:24884069G>A	uc001isb.2	-	20	4250	c.3763C>T	c.(3763-3765)CGT>TGT	p.R1255C	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1254	Rho-GAP.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GTTTTCAGACGATCTAGAGGA	0.303													26	34					0	0	0.005443	0	0
GPR158	57512	broad.mit.edu	37	10	25886748	25886748	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:25886748G>A	uc001isj.2	+	11	2253	c.2193G>A	c.(2191-2193)AAG>AAA	p.K731K	GPR158_uc001isk.2_Silent_p.K106K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	731	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ATAAAAGAAAGAAGATGATCA	0.438													34	93					0	0	0.013726	0	0
GAD2	2572	broad.mit.edu	37	10	26575418	26575418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:26575418G>A	uc001isp.2	+	13	1884	c.1381G>A	c.(1381-1383)GCA>ACA	p.A461T	GAD2_uc001isq.2_Missense_Mutation_p.A461T	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	461					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	GATGTGGAGGGCAAAGGTGAG	0.408													16	33					0	0	0.007413	0	0
ARMC4	55130	broad.mit.edu	37	10	28225752	28225752	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:28225752A>C	uc009xky.2	-	15	2253	c.2155T>G	c.(2155-2157)TTG>GTG	p.L719V	ARMC4_uc010qds.1_Missense_Mutation_p.L244V|ARMC4_uc010qdt.1_Missense_Mutation_p.L411V|ARMC4_uc001itz.2_Missense_Mutation_p.L719V	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	719							binding			ovary(4)|skin(2)	6						AGACTGGCCAAGGGCTTAAGT	0.473													43	81					0	0	0.013114	0	0
Unknown	0	broad.mit.edu	37	10	30992578	30992578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:30992578G>A	uc010qdx.1	+	6	1020	c.478G>A	c.(478-480)GAA>AAA	p.E160K						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		GAACCCCGGGGAACTTGCCCA	0.413													81	132					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	10	30998282	30998282	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:30998282G>A	uc010qdx.1	+	8	1370	c.828G>A	c.(826-828)GGG>GGA	p.G276G						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		GCTCCTCTGGGGATTTCGCAG	0.547													14	17					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	10	31001486	31001486	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:31001486G>A	uc010qdx.1	+	9	1471	c.929_splice	c.e9-1	p.G310_splice						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		TGTAACTACAGGAAAAAAATC	0.448													19	29					0	0	0.012319	0	0
RET	5979	broad.mit.edu	37	10	43617399	43617399	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:43617399G>A	uc001jal.2	+	16	2926	c.2736G>A	c.(2734-2736)CGG>CGA	p.R912R	RET_uc001jak.1_Silent_p.R912R|RET_uc010qez.1_Silent_p.R658R	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	912	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TTTAGGGTCGGATTCCAGTTA	0.453		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				45	46					0	0	0.014410	0	0
TMEM72	643236	broad.mit.edu	37	10	45430427	45430427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:45430427G>A	uc001jbn.2	+	5	870	c.673G>A	c.(673-675)GAA>AAA	p.E225K	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_Missense_Mutation_p.E107K	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	225						integral to membrane					0						GGTGCACTTTGAAGACAACTT	0.607													49	39					0	0	0.014410	0	0
PPYR1	5540	broad.mit.edu	37	10	47087903	47087904	+	Missense_Mutation	DNP	CC	TT	TT	rs143707760		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:47087903_47087904CC>TT	uc001jee.2	+	3	1539_1540	c.1120_1121CC>TT	c.(1120-1122)CCC>TTC	p.P374F	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.P374F	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	374	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane		p.P374L(1)		ovary(1)|skin(1)	2						CAGGTCCAATCCCATTTAACCA	0.589													19	41					0	0	0.004672	0	0
PCDH15	65217	broad.mit.edu	37	10	55582773	55582773	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:55582773C>T	uc001jju.1	-	33	5108	c.4713G>A	c.(4711-4713)CAG>CAA	p.Q1571Q	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.Q1568Q|PCDH15_uc010qhw.1_Silent_p.Q1531Q|PCDH15_uc010qhx.1_Silent_p.Q1502Q|PCDH15_uc010qhy.1_Silent_p.Q1578Q|PCDH15_uc010qhz.1_Silent_p.Q1573Q|PCDH15_uc010qia.1_Silent_p.Q1551Q|PCDH15_uc010qib.1_Silent_p.Q1548Q	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1571	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCCACAGCCTCTGAATCTTTT	0.468										HNSCC(58;0.16)			52	25					0	0	0.014410	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62637807	62637807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:62637807G>A	uc001jli.2	-	9	2023	c.1585C>T	c.(1585-1587)CCG>TCG	p.P529S	RHOBTB1_uc001jlh.2_Missense_Mutation_p.P529S|RHOBTB1_uc001jlj.2_Missense_Mutation_p.P529S|RHOBTB1_uc001jlk.2_Missense_Mutation_p.P529S|RHOBTB1_uc009xpe.1_Missense_Mutation_p.P467S|RHOBTB1_uc009xpd.2_5'UTR|RHOBTB1_uc001jll.2_Missense_Mutation_p.P279S	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	529	BTB 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					TTTATGTTCGGGAGATACACC	0.403													23	25					0	0	0.003954	0	0
ANXA2P3	305	broad.mit.edu	37	10	66586164	66586164	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:66586164G>A	uc009xpm.1	+	1		c.880G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						TGAAGGGCCGGGGGCTCGAGA	0.478													9	7					0	0	0.008291	0	0
ANXA2P3	305	broad.mit.edu	37	10	66586167	66586167	+	RNA	SNP	G	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:66586167G>C	uc009xpm.1	+	1		c.883G>C				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						AGGGCCGGGGGCTCGAGATAA	0.483													9	6					0	0	0.008291	0	0
CCAR1	55749	broad.mit.edu	37	10	70547713	70547714	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:70547713_70547714CC>TT	uc001joo.2	+	22	3029_3030	c.2910_2911CC>TT	c.(2908-2913)CTCCGT>CTTTGT	p.R971C	CCAR1_uc010qiz.1_Missense_Mutation_p.R956C|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	971					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						AAGTAGTGCTCCGTGAATCTTG	0.351													18	11					0	0	0.004672	0	0
CDH23	64072	broad.mit.edu	37	10	73439179	73439179	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:73439179C>T	uc001jrx.3	+	16	2165	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	CDH23_uc001jry.2_Silent_p.I212I|CDH23_uc001jrz.2_Silent_p.I212I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	596	Cadherin 6.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACAACCAGATCACCTACAGCA	0.592													6	6					0	0	0.001168	0	0
ANXA11	311	broad.mit.edu	37	10	81928751	81928751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:81928751C>T	uc001kbq.1	-	6	1360	c.535G>A	c.(535-537)GTC>ATC	p.V179I	ANXA11_uc010qlx.1_Missense_Mutation_p.V279I|ANXA11_uc001kbr.1_Missense_Mutation_p.V179I|ANXA11_uc001kbs.1_Missense_Mutation_p.V179I|ANXA11_uc001kbt.1_Missense_Mutation_p.V179I|ANXA11_uc010qly.1_Missense_Mutation_p.V146I|ANXA11_uc009xsq.1_Missense_Mutation_p.V179I|ANXA11_uc001kbu.1_Missense_Mutation_p.V179I	NM_145869	NP_665876	P50995	ANX11_HUMAN	annexin A11	179					cell cycle|cytokinesis, completion of separation|phagocytosis|response to calcium ion	azurophil granule|melanosome|midbody|nuclear envelope|nucleoplasm|phagocytic vesicle|specific granule|spindle	calcium-dependent phospholipid binding|calcium-dependent protein binding|S100 alpha binding			ovary(1)	1	Prostate(51;0.00985)|all_epithelial(25;0.0951)		Colorectal(32;0.109)			GCGGGGGTGACAGTCCCAGAC	0.662													5	3					0	0	0.001168	0	0
FAM22D	728130	broad.mit.edu	37	10	89118113	89118113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:89118113C>T	uc001kes.2	+	1	637	c.91C>T	c.(91-93)CTT>TTT	p.L31F	FAM22D_uc009xte.1_Missense_Mutation_p.L31F	NM_001009610	NP_001009610	Q5VT03	FA22D_HUMAN	hypothetical protein LOC728130	31											0						GGGTCTTACCCTTGGCTTTTC	0.517													47	116					0	0	0.014410	0	0
BTAF1	9044	broad.mit.edu	37	10	93767976	93767976	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:93767976T>C	uc001khr.2	+	26	3855	c.3757T>C	c.(3757-3759)TTG>CTG	p.L1253L		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1253					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				TGGGAAAAAATTGGAAAATTA	0.363													43	49					0	0	0.011902	0	0
PLCE1	51196	broad.mit.edu	37	10	95791355	95791355	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:95791355G>A	uc001kjk.2	+	2	1186	c.552G>A	c.(550-552)AGG>AGA	p.R184R	PLCE1_uc010qnx.1_Silent_p.R184R	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	184					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACAGCAGAAGGGCAGTATTTC	0.403													29	30					0	0	0.009535	0	0
CYP2C9	1559	broad.mit.edu	37	10	96707543	96707543	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:96707543C>T	uc001kka.3	+	4	514	c.489C>T	c.(487-489)CCC>CCT	p.P163P	CYP2C9_uc009xut.2_Silent_p.P163P	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	163					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TAGCCTCACCCTGTGATCCCA	0.303													50	36					0	0	0.014410	0	0
DNTT	1791	broad.mit.edu	37	10	98088481	98088481	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:98088481G>A	uc001kmf.2	+	8	1178	c.1008_splice	c.e8-1	p.R336_splice	DNTT_uc001kmg.2_Splice_Site_p.R336_splice	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1						DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		TTGAAAATTAGGGGTAAGAAG	0.333													31	13					0	0	0.013726	0	0
SLIT1	6585	broad.mit.edu	37	10	98803198	98803198	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:98803198G>A	uc001kmw.2	-	19	2178	c.1926C>T	c.(1924-1926)CTC>CTT	p.L642L	SLIT1_uc009xvh.1_Silent_p.L652L	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	642	LRR 16.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		CGTAGAGCGAGAGGAGCCGGA	0.647													29	28					0	0	0.008361	0	0
CCDC147	159686	broad.mit.edu	37	10	106125629	106125629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:106125629G>A	uc001kyh.2	+	5	789	c.655G>A	c.(655-657)GAA>AAA	p.E219K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	219	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CCGGAAGAAGGAAAAACTAGA	0.493													17	13					0	0	0.006122	0	0
KCNK18	338567	broad.mit.edu	37	10	118969252	118969252	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:118969252C>T	uc010qsr.1	+	3	597	c.597C>T	c.(595-597)GTC>GTT	p.V199V		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	199	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		ATGAAGCTGTCCCTCAGATCA	0.532													40	24					0	0	0.006230	0	0
PRLHR	2834	broad.mit.edu	37	10	120354048	120354048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:120354048G>A	uc001ldp.1	-	2	848	c.709C>T	c.(709-711)CCT>TCT	p.P237S		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	237	Helical; Name=5; (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		ACCAGCAGAGGGAGCAGGTAG	0.687													3	1					0	0	0.004672	0	0
DMBT1	1755	broad.mit.edu	37	10	124361432	124361432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:124361432G>A	uc001lgk.1	+	29	3569	c.3463G>A	c.(3463-3465)GAT>AAT	p.D1155N	DMBT1_uc001lgl.1_Missense_Mutation_p.D1145N|DMBT1_uc001lgm.1_Missense_Mutation_p.D656N|DMBT1_uc009xzz.1_Missense_Mutation_p.D1155N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1155	SRCR 9.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGACACCAATGATGCCAATGT	0.602													91	60					0	0	0.014410	0	0
CPXM2	119587	broad.mit.edu	37	10	125521430	125521430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr10:125521430C>T	uc001lhk.1	-	11	2060	c.1735G>A	c.(1735-1737)GAG>AAG	p.E579K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	579					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		ACAGTGCCCTCCTCCTTCTGG	0.662													11	7					0	0	0.010729	0	0
B4GALNT4	338707	broad.mit.edu	37	11	372901	372902	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:372901_372902CC>TT	uc001lpb.2	+	4	407_408	c.398_399CC>TT	c.(397-399)GCC>GTT	p.A133V		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	133	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGTGGGGGCGCCGTGGGCCACC	0.599													9	27					0	0	0.004672	0	0
LRDD	55367	broad.mit.edu	37	11	803340	803340	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:803340G>A	uc001lro.1	-	3	685	c.543C>T	c.(541-543)AAC>AAT	p.N181N	LRDD_uc009yck.1_5'Flank|LRDD_uc001lrk.1_Silent_p.N181N|LRDD_uc001lrl.1_Silent_p.N35N|LRDD_uc001lrm.1_5'UTR|LRDD_uc001lrn.1_Silent_p.N35N|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	181	LRR 3.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TCTGCAGGCGGTTGTGTGTCA	0.637													35	47					0	0	0.005524	0	0
MUC6	4588	broad.mit.edu	37	11	1017189	1017189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:1017189G>A	uc001lsw.2	-	31	5663	c.5612C>T	c.(5611-5613)TCA>TTA	p.S1871L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1871	Thr-rich.|2.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGTTGGCATTGAGTGGATGGA	0.572													41	352					0	0	0.014410	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642939	1642939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:1642939C>T	uc009ycy.1	-	3	610	c.523G>A	c.(523-525)GGA>AGA	p.G175R		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	189	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCACAGCCTCCTTTGGAGCCC	0.652													48	96					0	0	0.014410	0	0
SYT8	90019	broad.mit.edu	37	11	1858497	1858497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:1858497G>A	uc001lue.1	+	9	1170	c.1042G>A	c.(1042-1044)GGT>AGT	p.G348S	SYT8_uc001lud.2_Missense_Mutation_p.G348S|SYT8_uc001luf.1_Missense_Mutation_p.G334S|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank|TNNI2_uc010qxe.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	348	Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		GGTGCACCTGGGTGCCCGGGC	0.711													12	15					0	0	0.010729	0	0
TH	7054	broad.mit.edu	37	11	2186909	2186909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:2186909C>T	uc001lvq.2	-	12	1301	c.1282G>A	c.(1282-1284)GGG>AGG	p.G428R	TH_uc001lvp.2_Missense_Mutation_p.G424R|TH_uc001lvr.2_Missense_Mutation_p.G397R|TH_uc010qxj.1_Missense_Mutation_p.G401R|TH_uc001lvs.2_Missense_Mutation_p.G303R|TH_uc001lvt.2_Missense_Mutation_p.G307R|TH_uc009ydh.1_RNA	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	428					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	AGGAGCTCCCCGTAGGAGGAC	0.667													7	19					0	0	0.004482	0	0
KCNQ1	3784	broad.mit.edu	37	11	2790146	2790146	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:2790146C>T	uc001lwn.2	+	12	1695	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	KCNQ1_uc009ydp.1_Silent_p.F313F|KCNQ1_uc001lwo.2_Silent_p.F402F	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	529	Cytoplasmic (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	AGAAGAAATTCCAGGTAAGCC	0.582													15	43					0	0	0.006122	0	0
CARS	833	broad.mit.edu	37	11	3059395	3059395	+	Missense_Mutation	SNP	G	A	A	rs146537533		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:3059395G>A	uc001lxh.2	-	6	511	c.437C>T	c.(436-438)CCC>CTC	p.P146L	CARS_uc001lxe.2_Missense_Mutation_p.P136L|CARS_uc001lxf.2_Missense_Mutation_p.P229L|CARS_uc001lxg.2_Missense_Mutation_p.P146L|CARS_uc010qxo.1_Missense_Mutation_p.P229L|CARS_uc010qxp.1_Missense_Mutation_p.P159L|uc001lxi.1_Intron	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	146					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	CTTTTTATCGGGATCCGTGGT	0.453			T	ALK	ALCL						OREG0020690	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	104					0	0	0.004656	0	0
OR51F1	256892	broad.mit.edu	37	11	4791007	4791007	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:4791007G>A	uc010qyl.1	-	1	141	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	47						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGACAAACAGGATCACGCTGT	0.473													23	31					0	0	0.014323	0	0
OR52R1	119695	broad.mit.edu	37	11	4825583	4825583	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:4825583A>C	uc010qym.1	-	1	265	c.265T>G	c.(265-267)TCT>GCT	p.S89A		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGGATGAGAAGAGCTGTTC	0.488													22	36					0	0	0.012319	0	0
OR51T1	401665	broad.mit.edu	37	11	4903118	4903118	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:4903118C>G	uc010qyp.1	+	1	70	c.70C>G	c.(70-72)CTT>GTT	p.L24V		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	Error:Variant_position_missing_in_Q8NGJ9_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTTCAGTGTCTTCAACCAAC	0.318													15	45					0	0	0.004007	0	0
OR51L1	119682	broad.mit.edu	37	11	5020409	5020409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5020409C>T	uc010qyu.1	+	1	197	c.197C>T	c.(196-198)TCC>TTC	p.S66F		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TACTTTATTTCCATCTTAGCA	0.448													48	86					0	0	0.014410	0	0
OR51L1	119682	broad.mit.edu	37	11	5021142	5021142	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5021142C>T	uc010qyu.1	+	1	930	c.930C>T	c.(928-930)GTC>GTT	p.V310V		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAAGTTTGTCCTAAGGAGGA	0.403													17	38					0	0	0.007413	0	0
OR52E2	119678	broad.mit.edu	37	11	5080030	5080030	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5080030G>A	uc010qyw.1	-	1	828	c.828C>T	c.(826-828)CTC>CTT	p.L276L		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GATTGGCTAGGAGTATATGGA	0.423													34	67					0	0	0.005524	0	0
OR52A5	390054	broad.mit.edu	37	11	5153632	5153632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5153632G>A	uc010qyx.1	-	1	241	c.241C>T	c.(241-243)CCC>TCC	p.P81S		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	81	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		AACATTTTGGGAAGAATGCAG	0.378													22	39					0	0	0.014323	0	0
HBE1	3046	broad.mit.edu	37	11	5290845	5290845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5290845G>A	uc001mal.1	-	2	407	c.154C>T	c.(154-156)CCC>TCC	p.P52S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Missense_Mutation_p.P52S	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	52					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGGCAGAGGGAGACGACAGG	0.478													25	74					0	0	0.005443	0	0
OR52N4	390072	broad.mit.edu	37	11	5776099	5776099	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:5776099G>A	uc001mbu.2	+	1	177	c.129G>A	c.(127-129)GGG>GGA	p.G43G	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		CTATGGTAGGGAATTGTGGAC	0.453													31	65					0	0	0.003271	0	0
OR56A4	120793	broad.mit.edu	37	11	6023742	6023742	+	Missense_Mutation	SNP	G	A	A	rs138873327		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:6023742G>A	uc010qzv.1	-	1	637	c.637C>T	c.(637-639)CCT>TCT	p.P213S		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P213S(1)		central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGGGAACAGGAAGAGAAACA	0.483													15	37					0	0	0.002450	0	0
OR2AG1	144125	broad.mit.edu	37	11	6806718	6806718	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:6806718C>T	uc001mer.1	+	1	450	c.450C>T	c.(448-450)ATC>ATT	p.I150I		NM_001004489	NP_001004489	Q9H205	O2AG1_HUMAN	olfactory receptor, family 2, subfamily AG,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.19e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CGTCCTGGATCCTGGCATCCC	0.522													27	53					0	0	0.006320	0	0
SBF2	81846	broad.mit.edu	37	11	9879814	9879814	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:9879814A>C	uc001mib.2	-	18	2197	c.2059T>G	c.(2059-2061)TCA>GCA	p.S687A	SBF2_uc001mif.3_Missense_Mutation_p.S443A|uc001mig.2_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	687					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		TCCTTGGCTGAGAGATAAAGG	0.438													62	101					0	0	0.014410	0	0
ANO3	63982	broad.mit.edu	37	11	26463531	26463531	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:26463531C>G	uc001mqt.3	+	2	258	c.113C>G	c.(112-114)CCT>CGT	p.P38R	ANO3_uc010rdr.1_Missense_Mutation_p.P22R	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	38	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AGATCCCTGCCTTGCCTCGCC	0.443													72	104					0	0	0.014410	0	0
LGR4	55366	broad.mit.edu	37	11	27389878	27389878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:27389878G>A	uc001mrj.3	-	18	2877	c.2392C>T	c.(2392-2394)CCA>TCA	p.P798S	LGR4_uc001mrk.3_Missense_Mutation_p.P774S	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	798	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						TACAGGACTGGATTCAGGCAA	0.393													57	90					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	11	30902704	30902705	+	Splice_Site	DNP	CC	AT	AT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:30902704_30902705CC>AT	uc001mss.1	-	15		c.2327_splice	c.e15+1		uc009yjk.1_Splice_Site_p.E1190_splice|uc009yjj.1_Splice_Site					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		ATCATGCATACCTTTTGGGGTT	0.396													16	17					0	0	0.004672	0	0
NAT10	55226	broad.mit.edu	37	11	34152954	34152954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:34152954C>T	uc001mvk.2	+	14	1640	c.1396C>T	c.(1396-1398)CAG>TAG	p.Q466*	NAT10_uc010ren.1_Nonsense_Mutation_p.Q394*	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	466						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				GGTTTCCCTCCAGGAGTCAAT	0.473													38	43					0	0	0.006230	0	0
SLC1A2	6506	broad.mit.edu	37	11	35313843	35313843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:35313843G>A	uc001mwd.2	-	7	1674	c.1082C>T	c.(1081-1083)ACC>ATC	p.T361I	SLC1A2_uc001mwe.2_Missense_Mutation_p.T352I|SLC1A2_uc010rev.1_Missense_Mutation_p.T361I	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	361					D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	CCTGGAAGCGGTGCCCAGGGC	0.458													78	151					0	0	0.014410	0	0
PRR5L	79899	broad.mit.edu	37	11	36484219	36484219	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:36484219A>G	uc001mwo.3	+	9	1429	c.1040A>G	c.(1039-1041)GAC>GGC	p.D347G	PRR5L_uc001mwp.2_Missense_Mutation_p.D347G|PRR5L_uc009ykk.2_Missense_Mutation_p.D219G|PRR5L_uc010rfc.1_3'UTR	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	347										ovary(1)	1						GACAACCCTGACGGACTGGAG	0.652													12	35					0	0	0.003163	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136781	40136781	+	Silent	SNP	C	T	T	rs147676362	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:40136781C>T	uc001mxa.1	-	2	3026	c.1062G>A	c.(1060-1062)CCG>CCA	p.P354P	LRRC4C_uc001mxc.1_Silent_p.P350P|LRRC4C_uc001mxd.1_Silent_p.P350P|LRRC4C_uc001mxb.1_Silent_p.P350P	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	354	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				CCACAATCACCGGAGCATAGC	0.522													37	57					0	0	0.003755	0	0
OR4C46	119749	broad.mit.edu	37	11	51515496	51515496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:51515496C>T	uc010ric.1	+	1	215	c.215C>T	c.(214-216)TCC>TTC	p.S72F		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	72	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCCTGCTATTCCTCTGTCAAT	0.473													68	143					0	0	0.014410	0	0
OR5J2	282775	broad.mit.edu	37	11	55944743	55944743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:55944743C>T	uc010rjb.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					GTGATCATTTCCTACATCTTC	0.488													33	74					0	0	0.013726	0	0
OR5T1	390155	broad.mit.edu	37	11	56043654	56043654	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:56043654C>T	uc001nio.1	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GCCTGTCCTTCTGTGGATCCA	0.418													78	163					0	0	0.014410	0	0
OR5M1	390168	broad.mit.edu	37	11	56380059	56380059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:56380059C>T	uc001nja.1	-	1	920	c.920G>A	c.(919-921)GGA>GAA	p.G307E		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAAGGATTTTCCCCTAATCAT	0.383													73	103					0	0	0.014410	0	0
OR5M1	390168	broad.mit.edu	37	11	56380901	56380901	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:56380901G>A	uc001nja.1	-	1	78	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CCCCAAACAGGATCTTCTCTA	0.473													48	80					0	0	0.014410	0	0
APLNR	187	broad.mit.edu	37	11	57003433	57003433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:57003433C>T	uc001njo.2	-	1	1495	c.1046G>A	c.(1045-1047)GGG>GAG	p.G349E	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	349	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CTGGCTGTGCCCCGAAGAGTA	0.637													25	45					0	0	0.003954	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57076759	57076759	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:57076759C>T	uc001njr.2	-	5	3738	c.3426G>A	c.(3424-3426)AAG>AAA	p.K1142K	TNKS1BP1_uc001njs.2_Silent_p.K1142K|TNKS1BP1_uc009ymd.1_Silent_p.K593K	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1142	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CACCTTCCATCTTGCTAGAAG	0.567													23	51					0	0	0.002780	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57080210	57080210	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:57080210A>C	uc001njr.2	-	4	2264	c.1952T>G	c.(1951-1953)GTG>GGG	p.V651G	TNKS1BP1_uc001njs.2_Missense_Mutation_p.V651G|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.V102G	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	651	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GGCTAGGGTCACGGCCTCCTC	0.657													25	38					0	0	0.003330	0	0
OR4D10	390197	broad.mit.edu	37	11	59245615	59245616	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:59245615_59245616CC>TT	uc001nnz.1	+	1	713_714	c.713_714CC>TT	c.(712-714)TCC>TTT	p.S238F		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AAAGCCATCTCCACCTGCACCT	0.545													65	93					0	0	0.004672	0	0
BEST1	7439	broad.mit.edu	37	11	61727006	61727006	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:61727006G>C	uc001nss.2	+	8	1484	c.904G>C	c.(904-906)GAT>CAT	p.D302H	BEST1_uc010rlq.1_Missense_Mutation_p.M309I|BEST1_uc010rlr.1_Intron|BEST1_uc010rls.1_Intron|BEST1_uc001nsr.2_Missense_Mutation_p.D242H|BEST1_uc009ynt.2_RNA|BEST1_uc010rlt.1_Missense_Mutation_p.D242H|BEST1_uc001nst.2_Intron|BEST1_uc010rlu.1_Missense_Mutation_p.M263I|BEST1_uc010rlv.1_Missense_Mutation_p.D196H	NM_004183	NP_004174	O76090	BEST1_HUMAN	bestrophin 1 isoform 1	302	Cytoplasmic (Potential).		D -> V (in VMD2).|D -> H (in VMD2).|Missing (in VMD2).|D -> G (in VMD2).		response to stimulus|transepithelial chloride transport|visual perception	basolateral plasma membrane|chloride channel complex|cytosol|membrane fraction	chloride channel activity			central_nervous_system(1)	1						TGGAGAGGATGATGATGATTT	0.522													13	30					0	0	0.003163	0	0
ASRGL1	80150	broad.mit.edu	37	11	62159693	62159693	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:62159693C>T	uc001nte.3	+	7	1148	c.864C>T	c.(862-864)GCC>GCT	p.A288A	ASRGL1_uc001ntf.3_Silent_p.A288A|ASRGL1_uc001ntg.3_Silent_p.A160A	NM_025080	NP_079356	Q7L266	ASGL1_HUMAN	asparaginase-like 1	288					asparagine catabolic process via L-aspartate|protein maturation	cytoplasm|microtubule cytoskeleton|nucleus	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0					L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)	GGGCAGCCGCCAAGGACGGCA	0.527											OREG0021023	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	51					0	0	0.009535	0	0
B3GAT3	26229	broad.mit.edu	37	11	62383255	62383255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:62383255G>A	uc001ntw.2	-	5	955	c.926C>T	c.(925-927)ACT>ATT	p.T309I	B3GAT3_uc009ynz.2_Missense_Mutation_p.T302I|B3GAT3_uc001ntx.2_RNA	NM_012200	NP_036332	O94766	B3GA3_HUMAN	beta-1,3-glucuronyltransferase 3	309	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|manganese ion binding				0						CTCTGTCCGAGTATGCCACAC	0.637													9	23					0	0	0.004482	0	0
SLC22A9	114571	broad.mit.edu	37	11	63176257	63176257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:63176257G>A	uc001nww.2	+	9	1775	c.1507G>A	c.(1507-1509)GGA>AGA	p.G503R	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	503	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GATCATCTATGGAGTCTTCCC	0.488													40	51					0	0	0.007835	0	0
PLA2G16	11145	broad.mit.edu	37	11	63357753	63357753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:63357753G>A	uc001nxh.2	-	3	629	c.206C>T	c.(205-207)GCC>GTC	p.A69V	PLA2G16_uc001nxi.2_Missense_Mutation_p.A81V|PLA2G16_uc009you.1_Missense_Mutation_p.A69V	NM_007069	NP_009000	P53816	PAG16_HUMAN	HRAS-like suppressor 3	69					lipid catabolic process	integral to membrane|perinuclear region of cytoplasm	hydrolase activity|protein binding			ovary(1)	1						GTCACTCCCGGCCACATCATA	0.572													23	39					0	0	0.003330	0	0
VEGFB	7423	broad.mit.edu	37	11	64004989	64004989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:64004989C>T	uc001nyw.2	+	6	548	c.508C>T	c.(508-510)CCA>TCA	p.P170S	VEGFB_uc001nyx.2_Intron	NM_003377	NP_003368	P49765	VEGFB_HUMAN	vascular endothelial growth factor B precursor	170					anti-apoptosis|induction of positive chemotaxis|negative regulation of gene expression|negative regulation of neuron apoptosis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular wound healing|vascular endothelial growth factor receptor signaling pathway	extracellular region|extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|heparin binding|vascular endothelial growth factor receptor 1 binding				0						CCATCCCACTCCAGCCCCAGG	0.726													12	35					0	0	0.010729	0	0
SF1	7536	broad.mit.edu	37	11	64535117	64535117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:64535117G>A	uc001obb.1	-	10	1645	c.1268C>T	c.(1267-1269)CCT>CTT	p.P423L	SF1_uc010rnm.1_Missense_Mutation_p.P115L|SF1_uc010rnn.1_Missense_Mutation_p.P397L|SF1_uc001oaz.1_Missense_Mutation_p.P548L|SF1_uc001oba.1_Missense_Mutation_p.P423L|SF1_uc001obc.1_Missense_Mutation_p.P423L|SF1_uc001obd.1_Missense_Mutation_p.P423L|SF1_uc001obe.1_Missense_Mutation_p.P308L|SF1_uc010rno.1_Missense_Mutation_p.P308L	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	423	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						CTGCATCCAAGGGGGTGGGGG	0.632											OREG0021062	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	62					0	0	0.003954	0	0
ATG2A	23130	broad.mit.edu	37	11	64675085	64675086	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:64675085_64675086GG>AA	uc001obx.2	-	18	2673_2674	c.2558_2559CC>TT	c.(2557-2559)CCC>CTT	p.P853L		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	853							protein binding			ovary(1)|central_nervous_system(1)	2						CGGCGGGGTCGGGGGTGGGAAG	0.634													11	5					0	0	0.004672	0	0
MALAT1	378938	broad.mit.edu	37	11	65273653	65273653	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:65273653G>A	uc010roh.1	+	1		c.8421G>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TCTTTGCTTTGACTACTAATC	0.453													18	39					0	0	0.007413	0	0
RIN1	9610	broad.mit.edu	37	11	66102365	66102365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:66102365C>T	uc001ohn.1	-	6	1032	c.905G>A	c.(904-906)GGC>GAC	p.G302D	RIN1_uc010roy.1_5'UTR|RIN1_uc009yrd.1_5'UTR|RIN1_uc010roz.1_Missense_Mutation_p.G197D|RIN1_uc010rpa.1_Missense_Mutation_p.G197D	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	302	Ras and 14-3-3 protein binding region.				endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						AAGGCTAGGGCCACTGCCTGC	0.716													3	7					0	0	0.004672	0	0
SPTBN2	6712	broad.mit.edu	37	11	66457550	66457550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:66457550C>T	uc001ojd.2	-	27	5842	c.5770G>A	c.(5770-5772)GAT>AAT	p.D1924N	SPTBN2_uc001ojc.1_5'Flank	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1924	Spectrin 16.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TTGACCTCATCCATCCAGAGC	0.632													58	86					0	0	0.014410	0	0
KDM2A	22992	broad.mit.edu	37	11	67020215	67020215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:67020215C>T	uc001ojw.2	+	18	3683	c.2819C>T	c.(2818-2820)GCC>GTC	p.A940V	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Missense_Mutation_p.A634V|KDM2A_uc001ojz.1_Missense_Mutation_p.A398V|KDM2A_uc001oka.2_Missense_Mutation_p.A64V	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	940					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						AGGTGTAAGGCCATTGTGCCC	0.498											OREG0021121	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	23					0	0	0.003163	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433852	67433852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:67433852G>A	uc001omr.2	-	5	611	c.172C>T	c.(172-174)CCG>TCG	p.P58S	ALDH3B2_uc001oms.2_Missense_Mutation_p.P58S|ALDH3B2_uc009ysa.1_Missense_Mutation_p.P58S	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	58					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	ATTTCTGACGGCTTCAGCACC	0.672													4	6					0	0	0.009096	0	0
POLD3	10714	broad.mit.edu	37	11	74303707	74303707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:74303707G>A	uc001ovf.1	+	1	79	c.4G>A	c.(4-6)GCG>ACG	p.A2T	POLD3_uc009yua.1_5'UTR	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	2					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					CCGCACCATGGCGGACCAGCT	0.622													9	10					0	0	0.006214	0	0
RNF169	254225	broad.mit.edu	37	11	74547756	74547756	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:74547756A>G	uc001ovl.3	+	6	2121	c.2108A>G	c.(2107-2109)AAC>AGC	p.N703S	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	703							zinc ion binding			ovary(1)	1						CGGTCCAGCAACATGGCCGGG	0.498													27	37					0	0	0.005443	0	0
ODZ4	26011	broad.mit.edu	37	11	78369594	78369594	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:78369594G>A	uc001ozl.3	-	34	8282	c.7819C>T	c.(7819-7821)CTG>TTG	p.L2607L	ODZ4_uc001ozk.3_Silent_p.L832L|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2607	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGAAGTGCAGGTTCTCTAGG	0.557													13	21					0	0	0.001855	0	0
ODZ4	26011	broad.mit.edu	37	11	78497944	78497944	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:78497944G>A	uc001ozl.3	-	16	2827	c.2364C>T	c.(2362-2364)ATC>ATT	p.I788I		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	788	EGF-like 8.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCGCCATACCGATGGTGCAGT	0.667													3	7					0	0	0.009096	0	0
NAALAD2	10003	broad.mit.edu	37	11	89880513	89880513	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:89880513T>C	uc001pdf.3	+	3	319	c.210T>C	c.(208-210)CTT>CTC	p.L70L	NAALAD2_uc009yvx.2_Silent_p.L70L|NAALAD2_uc009yvy.2_Silent_p.L70L|NAALAD2_uc001pdd.2_Silent_p.L70L|NAALAD2_uc001pde.2_Silent_p.L70L	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	70	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TTACAAAGCTTCCTCATCTGG	0.363													26	33					0	0	0.003954	0	0
FAT3	120114	broad.mit.edu	37	11	92088413	92088413	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:92088413C>G	uc001pdj.3	+	1	3152	c.3135C>G	c.(3133-3135)GAC>GAG	p.D1045E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1045	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATTTCCCAGACTTTGCTGTTG	0.498										TCGA Ovarian(4;0.039)			48	77					0	0	0.014410	0	0
CNTN5	53942	broad.mit.edu	37	11	100064354	100064354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:100064354G>A	uc001pga.2	+	15	2182	c.1843G>A	c.(1843-1845)GAT>AAT	p.D615N	CNTN5_uc009ywv.1_Missense_Mutation_p.D615N|CNTN5_uc001pfz.2_Missense_Mutation_p.D615N|CNTN5_uc001pgb.2_Missense_Mutation_p.D541N|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	615	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ACAGCCTATTGATTTCGAGGA	0.368													27	46					0	0	0.012213	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103052562	103052562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:103052562G>A	uc001pho.2	+	40	6568	c.6424G>A	c.(6424-6426)GAA>AAA	p.E2142K	DYNC2H1_uc001phn.1_Missense_Mutation_p.E2142K|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2142	AAA 2 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AAATAATCTTGAAAATTGGAT	0.303													5	6					0	0	0.001168	0	0
KBTBD3	143879	broad.mit.edu	37	11	105924093	105924093	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:105924093G>A	uc001pja.2	-	4	1963	c.1323C>T	c.(1321-1323)CCC>CCT	p.P441P	KBTBD3_uc001pjb.2_Silent_p.P441P|KBTBD3_uc009yxm.2_Silent_p.P362P	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	437	Kelch 3.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		ATATGCCTCTGGGTAATGGGC	0.383													18	38					0	0	0.008871	0	0
ATM	472	broad.mit.edu	37	11	108224518	108224518	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:108224518C>T	uc001pkb.1	+	60	9082	c.8697C>T	c.(8695-8697)ATC>ATT	p.I2899I	ATM_uc009yxr.1_Silent_p.I2899I|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Silent_p.I1551I	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2899	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		AGGGCAAAATCCTTCCTACTC	0.398			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			59	126					0	0	0.014410	0	0
ATM	472	broad.mit.edu	37	11	108225561	108225561	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:108225561T>G	uc001pkb.1	+	61	9195	c.8810T>G	c.(8809-8811)GTG>GGG	p.V2937G	ATM_uc009yxr.1_Missense_Mutation_p.V2937G|C11orf65_uc010rvx.1_Intron|C11orf65_uc009yxu.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.V1589G	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2937	PI3K/PI4K.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ACCATGGAAGTGATGAGAAAC	0.338			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			56	116					0	0	0.014410	0	0
DIXDC1	85458	broad.mit.edu	37	11	111863713	111863713	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:111863713C>T	uc001pml.2	+	13	1554	c.1257C>T	c.(1255-1257)CTC>CTT	p.L419L	DIXDC1_uc001pmm.2_Silent_p.L208L|DIXDC1_uc001pmn.2_Silent_p.L125L|DIXDC1_uc010rwq.1_Silent_p.L84L	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	419	Potential.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		GGAACCGGCTCTTGGGAGAAT	0.423													8	10					0	0	0.006214	0	0
SIDT2	51092	broad.mit.edu	37	11	117066765	117066765	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:117066765A>T	uc001pqh.1	+	26	2523	c.2482A>T	c.(2482-2484)AAG>TAG	p.K828*	SIDT2_uc001pqi.1_Nonsense_Mutation_p.K825*|SIDT2_uc001pqj.1_Nonsense_Mutation_p.K140*|uc001pqk.1_Intron	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	828	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		GCAGCGGGACAAGATCTATGT	0.582													54	70					0	0	0.014410	0	0
CEP164	22897	broad.mit.edu	37	11	117209318	117209318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:117209318C>T	uc001prc.2	+	3	163	c.16C>T	c.(16-18)CTC>TTC	p.L6F	CEP164_uc001prb.2_Missense_Mutation_p.L6F|CEP164_uc001prd.2_Missense_Mutation_p.L6F|CEP164_uc010rxj.1_Intron|CEP164_uc010rxk.1_Missense_Mutation_p.L6F	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	6	Interaction with ATRIP.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		TGGACGACCCCTCCGCATAGG	0.488													31	71					0	0	0.010818	0	0
DSCAML1	57453	broad.mit.edu	37	11	117301461	117301461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:117301461G>A	uc001prh.1	-	32	5845	c.5843C>T	c.(5842-5844)CCC>CTC	p.P1948L		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1888	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GTGAGGGATGGGCACAGCCAC	0.652													44	76					0	0	0.014410	0	0
MLL	4297	broad.mit.edu	37	11	118375417	118375417	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:118375417T>A	uc001pta.2	+	27	8824	c.8801T>A	c.(8800-8802)TTG>TAG	p.L2934*	MLL_uc001ptb.2_Nonsense_Mutation_p.L2937*	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2934					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CTGTCTGTCTTGACCACCCGG	0.488			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								38	87					0	0	0.006999	0	0
BCL9L	283149	broad.mit.edu	37	11	118769512	118769512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:118769512G>A	uc001pug.2	-	8	5077	c.4112C>T	c.(4111-4113)CCC>CTC	p.P1371L	BCL9L_uc009zal.2_Missense_Mutation_p.P1366L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1371	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		AGGCCGAGAGGGAGTCTGCTC	0.627													19	21					0	0	0.007413	0	0
BCL9L	283149	broad.mit.edu	37	11	118773103	118773103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:118773103G>A	uc001pug.2	-	6	2314	c.1349C>T	c.(1348-1350)CCC>CTC	p.P450L	BCL9L_uc009zal.2_Missense_Mutation_p.P445L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	450	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CTGCTGGGGGGGAGGGGGGGC	0.672													21	23					0	0	0.008871	0	0
BCL9L	283149	broad.mit.edu	37	11	118773750	118773750	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:118773750G>A	uc001pug.2	-	5	1748	c.783C>T	c.(781-783)GAC>GAT	p.D261D	BCL9L_uc009zal.2_Silent_p.D256D	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	261					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CGAGGATGGAGTCGGCCCGGC	0.682													8	6					0	0	0.003080	0	0
OR6M1	390261	broad.mit.edu	37	11	123676701	123676701	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:123676701G>A	uc010rzz.1	-	1	357	c.357C>T	c.(355-357)GAC>GAT	p.D119D		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	119	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CCATGTAGCGGTCAAAGGACA	0.507													21	33					0	0	0.008871	0	0
OR10S1	219873	broad.mit.edu	37	11	123847882	123847882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:123847882G>A	uc001pzm.1	-	1	517	c.517C>T	c.(517-519)CAC>TAC	p.H173Y		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	173	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGGGAGGTGTGGATTGCAGCG	0.562													15	53					0	0	0.004007	0	0
OR10G8	219869	broad.mit.edu	37	11	123900949	123900949	+	Missense_Mutation	SNP	C	T	T	rs150048996		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:123900949C>T	uc001pzp.1	+	1	620	c.620C>T	c.(619-621)TCG>TTG	p.S207L		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		ATAGTGGCCTCGGGCTGCTTT	0.532													52	83					0	0	0.014410	0	0
VWA5A	4013	broad.mit.edu	37	11	124006949	124006949	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:124006949C>T	uc001pzu.2	+	13	1682	c.1473C>T	c.(1471-1473)ATC>ATT	p.I491I	VWA5A_uc001pzt.2_Silent_p.I491I	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	491										upper_aerodigestive_tract(1)|ovary(1)	2						AGACTGTCATCTTTAGGGGTC	0.493													32	74					0	0	0.010818	0	0
OR8B8	26493	broad.mit.edu	37	11	124310913	124310913	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:124310913G>A	uc010sal.1	-	1	69	c.69C>T	c.(67-69)GTC>GTT	p.V23V		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GGGGGATCTGGACTCCCGGTT	0.512													17	51					0	0	0.007413	0	0
OR8B12	219858	broad.mit.edu	37	11	124413276	124413276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:124413276G>A	uc010sam.1	-	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		CCCTGTGAAGGAAATGATGTT	0.438													15	52					0	0	0.003163	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128848751	128848751	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:128848751T>C	uc009zcp.2	-	18	1994	c.1994A>G	c.(1993-1995)AAC>AGC	p.N665S	ARHGAP32_uc009zcq.1_Missense_Mutation_p.N625S|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.N316S	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	665					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TTTCCCCAAGTTGAAAAAGGA	0.428													29	47					0	0	0.007291	0	0
BARX2	8538	broad.mit.edu	37	11	129306807	129306807	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:129306807G>C	uc001qfc.3	+	2	399	c.349G>C	c.(349-351)GCC>CCC	p.A117P		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	117											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CGAGGCCCTAGCCAGCAGCGA	0.687													13	19					0	0	0.013537	0	0
OPCML	4978	broad.mit.edu	37	11	132306634	132306634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:132306634G>A	uc001qgs.2	-	5	754	c.704C>T	c.(703-705)TCA>TTA	p.S235L	OPCML_uc001qgu.2_Missense_Mutation_p.S228L|OPCML_uc010sck.1_Missense_Mutation_p.S235L|OPCML_uc001qgt.2_Missense_Mutation_p.S234L|OPCML_uc010scl.1_Missense_Mutation_p.S194L	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	235	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		CTGACCGACTGAAACACCAGT	0.378													24	34					0	0	0.002780	0	0
GLB1L2	89944	broad.mit.edu	37	11	134240234	134240234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr11:134240234G>A	uc001qhp.2	+	12	1344	c.1156G>A	c.(1156-1158)GAG>AAG	p.E386K	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	386					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		GATGCCGTATGAGCCCTTAAC	0.597													57	102					0	0	0.014410	0	0
SLC6A13	6540	broad.mit.edu	37	12	352917	352917	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:352917C>A	uc001qic.1	-	3	318	c.265G>T	c.(265-267)GAG>TAG	p.E89*	SLC6A13_uc009zdj.1_Nonsense_Mutation_p.E89*|SLC6A13_uc010sdl.1_Intron|SLC6A13_uc010sdm.1_5'Flank	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	89					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AGTGCTGTCTCCAGAAGGAAG	0.527													21	21					7.45023e-12	7.62693e-12	0.010504	1	0
WNK1	65125	broad.mit.edu	37	12	968516	968516	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:968516A>G	uc001qio.3	+	6	2013	c.1506A>G	c.(1504-1506)TTA>TTG	p.L502L	WNK1_uc001qip.3_Silent_p.L502L|WNK1_uc001qir.3_5'Flank	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	502					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CCATAAAATTATGGCTACGTA	0.348													36	51					0	0	0.005524	0	0
NRIP2	83714	broad.mit.edu	37	12	2943930	2943930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:2943930G>A	uc001qlc.2	-	1	292	c.220C>T	c.(220-222)CGA>TGA	p.R74*	NRIP2_uc010sed.1_Nonsense_Mutation_p.R74*|uc009zdz.1_5'Flank	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	74					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			GCTCGGTCTCGAAGCTGTGCC	0.672													83	151					0	0	0.014410	0	0
ANO2	57101	broad.mit.edu	37	12	6030214	6030214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:6030214C>T	uc001qnm.2	-	3	586	c.514G>A	c.(514-516)GAC>AAC	p.D172N		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	176	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						ACCTCCAAGTCCTTCTCAAGC	0.597													21	41					0	0	0.002780	0	0
VWF	7450	broad.mit.edu	37	12	6080784	6080784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:6080784G>A	uc001qnn.1	-	44	7779	c.7529C>T	c.(7528-7530)TCC>TTC	p.S2510F	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2510					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GGAAGACTGGGAGTCCCCCCG	0.612													31	51					0	0	0.008361	0	0
VWF	7450	broad.mit.edu	37	12	6105273	6105273	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:6105273C>T	uc001qnn.1	-	35	6208	c.5958G>A	c.(5956-5958)GTG>GTA	p.V1986V	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1986	VWFD 4.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TATGGAGAATCACCTCCAGGT	0.537													11	29					0	0	0.001855	0	0
VWF	7450	broad.mit.edu	37	12	6122779	6122779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:6122779G>A	uc001qnn.1	-	32	5738	c.5488C>T	c.(5488-5490)CGC>TGC	p.R1830C	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1830	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	GCATCGTAGCGATCTCCAATT	0.532													30	47					0	0	0.012213	0	0
CD4	920	broad.mit.edu	37	12	6909310	6909311	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:6909310_6909311CC>TT	uc001qqv.1	+	2	251_252	c.6_7CC>TT	c.(4-9)AACCGG>AATTGG	p.R3W	CD4_uc009zez.1_Missense_Mutation_p.R3W|CD4_uc009zfa.1_Intron|CD4_uc009zfb.1_Intron|CD4_uc010sfj.1_Intron|CD4_uc009zfc.1_Intron|CD4_uc010sfk.1_Intron|CD4_uc010sfl.1_Intron	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	3					cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				CCACAATGAACCGGGGAGTCCC	0.574													17	44					0	0	0.004672	0	0
ZNF705A	440077	broad.mit.edu	37	12	8330138	8330138	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:8330138C>T	uc001qud.1	+	5	934	c.862C>T	c.(862-864)CTA>TTA	p.L288L	FAM66C_uc001que.3_5'Flank|FAM66C_uc001quf.3_5'Flank|FAM66C_uc009zgc.2_5'Flank|FAM66C_uc001qug.3_5'Flank	NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	288					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		TGCTTGTCTTCTATGTGGGAA	0.418													38	66					0	0	0.014410	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687287	8687287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:8687287G>A	uc001quo.1	-	6	772	c.607C>T	c.(607-609)CGG>TGG	p.R203W		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	203	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					TCACAAATCCGAAAATAATTG	0.398													34	39					0	0	0.012213	0	0
KLRC1	3821	broad.mit.edu	37	12	10601904	10601904	+	Missense_Mutation	SNP	C	T	T	rs139780190		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:10601904C>T	uc001qyl.2	-	5	585	c.421G>A	c.(421-423)GAA>AAA	p.E141K	KLRC1_uc009zhm.1_Missense_Mutation_p.E141K|KLRC1_uc001qym.2_Missense_Mutation_p.E123K|KLRC1_uc001qyn.2_Missense_Mutation_p.E141K|KLRC1_uc001qyo.2_Missense_Mutation_p.E123K	NM_002259	NP_002250	P26715	NKG2A_HUMAN	killer cell lectin-like receptor subfamily C,	141	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|regulation of immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0						AAACTCTCTTCCCAAGTTCTT	0.363													99	167					0	0	0.014410	0	0
PRB3	5544	broad.mit.edu	37	12	11421055	11421055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:11421055C>T	uc001qzs.2	-	3	166	c.128G>A	c.(127-129)GGA>GAA	p.G43E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	43	Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			CTGGTTTCCTCCTTGTGGGCG	0.572													60	96					0	0	0.014410	0	0
GUCY2C	2984	broad.mit.edu	37	12	14792859	14792859	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:14792859G>A	uc001rcd.2	-	19	2231	c.2094C>T	c.(2092-2094)TCC>TCT	p.S698S		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	698	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						TCATTCCATTGGAATTTTCCA	0.328													30	61					0	0	0.003755	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20874906	20874906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:20874906C>T	uc001rej.3	+	9	1299	c.944C>T	c.(943-945)TCC>TTC	p.S315F	SLCO1C1_uc010sii.1_Missense_Mutation_p.S315F|SLCO1C1_uc010sij.1_Missense_Mutation_p.S266F|SLCO1C1_uc009zip.2_Missense_Mutation_p.S149F|SLCO1C1_uc001rei.2_Missense_Mutation_p.S315F|SLCO1C1_uc010sik.1_Missense_Mutation_p.S197F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	315	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TCTGAGAAATCCAAGTTTATT	0.373													17	29					0	0	0.004990	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918881	21918881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:21918881G>A	uc001rff.2	-	3	1389	c.1051C>T	c.(1051-1053)CCA>TCA	p.P351S		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	351	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	CTGCACCGTGGAGCAGCTACT	0.478													38	81					0	0	0.004289	0	0
C12orf11	55726	broad.mit.edu	37	12	27081199	27081199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:27081199G>A	uc001rhk.3	-	5	1060	c.523C>T	c.(523-525)CTT>TTT	p.L175F	C12orf11_uc010sjk.1_Missense_Mutation_p.L74F	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	175					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					CAGTCTTCAAGCATTCGCACA	0.313													24	41					0	0	0.004656	0	0
LRRK2	120892	broad.mit.edu	37	12	40692938	40692938	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:40692938C>T	uc001rmg.3	+	25	3496	c.3375C>T	c.(3373-3375)CCC>CCT	p.P1125P	LRRK2_uc001rmh.1_Silent_p.P747P|LRRK2_uc009zjw.2_5'UTR	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1125	LRR 6.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TATGCTCCCCCTTGAGACTGA	0.328													50	69					0	0	0.014410	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967243	41967243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:41967243G>A	uc010skn.1	+	10	2133	c.2065G>A	c.(2065-2067)GAA>AAA	p.E689K	PDZRN4_uc001rmq.3_Missense_Mutation_p.E630K|PDZRN4_uc009zjz.2_Missense_Mutation_p.E628K|PDZRN4_uc001rmr.2_Missense_Mutation_p.E515K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	888							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GCCCAAGATGGAATGGAAGGT	0.488													30	62					0	0	0.010818	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42858895	42858895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:42858895G>A	uc010skv.1	-	7	1228	c.941C>T	c.(940-942)GCC>GTC	p.A314V	PRICKLE1_uc001rnl.2_Missense_Mutation_p.A314V|PRICKLE1_uc010skw.1_Missense_Mutation_p.A314V|PRICKLE1_uc001rnm.2_Missense_Mutation_p.A314V	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	314					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		AGAATCAGAGGCATGGACGTC	0.507													27	61					0	0	0.003954	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458161	45458161	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:45458161G>A	uc001rol.2	-	1		c.1034C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CAGTGGTCCCGACATTCTGGA	0.458													6	14					0	0	0.001168	0	0
ARID2	196528	broad.mit.edu	37	12	46285666	46285666	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:46285666C>T	uc001ros.1	+	17	5026	c.5026C>T	c.(5026-5028)CAG>TAG	p.Q1676*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q1676*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q1132*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q1303*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q1010*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1676					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TGAGCCTTTTCAGCGACAGCG	0.413													53	114					0	0	0.014410	0	0
FAM113B	91523	broad.mit.edu	37	12	47629950	47629950	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:47629950C>T	uc001rpn.2	+	4	1835	c.1104C>T	c.(1102-1104)TTC>TTT	p.F368F	FAM113B_uc001rpq.2_Silent_p.F368F	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	368	Pro-rich.						hydrolase activity	p.F368F(1)		skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CAGGTTTCTTCGTCGAAGACA	0.522													59	83					0	0	0.014410	0	0
H1FNT	341567	broad.mit.edu	37	12	48723227	48723228	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:48723227_48723228GG>AA	uc001rrm.2	+	1	465_466	c.153_154GG>AA	c.(151-156)AGGGGC>AGAAGC	p.G52S		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	52					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						GACCATCGAGGGGCTGCTCAAG	0.624													8	19					0	0	0.004672	0	0
OR8S1	341568	broad.mit.edu	37	12	48920064	48920064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:48920064C>T	uc010slu.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTCTTCTTATCCTACACCCGT	0.532													29	68					0	0	0.007291	0	0
FMNL3	91010	broad.mit.edu	37	12	50044968	50044968	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:50044968C>T	uc001ruv.1	-	16	2014	c.1780G>A	c.(1780-1782)GAT>AAT	p.D594N	FMNL3_uc001ruw.1_Missense_Mutation_p.D543N|FMNL3_uc001rut.1_Missense_Mutation_p.D160N|FMNL3_uc001ruu.1_Missense_Mutation_p.D444N	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	594	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						ATCTTCTCATCATCAAGTTCG	0.498													39	56					0	0	0.010771	0	0
ACVRL1	94	broad.mit.edu	37	12	52308264	52308264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:52308264G>A	uc001rzj.2	+	6	950	c.667G>A	c.(667-669)GGT>AGT	p.G223S	ACVRL1_uc001rzk.2_Missense_Mutation_p.G223S|ACVRL1_uc010snm.1_Missense_Mutation_p.G49S	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	223	Cytoplasmic (Potential).|Protein kinase.		G -> R (in HHT2).		blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	CTTGTGGCACGGTGAGAGTGT	0.567									Hereditary_Hemorrhagic_Telangiectasia				9	22					0	0	0.006214	0	0
KRT75	9119	broad.mit.edu	37	12	52828043	52828044	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:52828043_52828044CC>TT	uc001saj.2	-	1	67_68	c.45_46GG>AA	c.(43-48)AGGGGC>AGAAGC	p.G16S		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	16	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GTGCTGAAGCCCCTGCGGCTGC	0.678													19	12					0	0	0.004672	0	0
KRT76	51350	broad.mit.edu	37	12	53170631	53170631	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:53170631C>A	uc001sax.2	-	1	499	c.445G>T	c.(445-447)GGG>TGG	p.G149W		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	149	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GGAAAGCCCCCAGGGCCAAAG	0.308													7	20					0.00198382	0.00201392	0.001984	1	0
ITGB7	3695	broad.mit.edu	37	12	53589216	53589216	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:53589216A>G	uc009zmv.2	-	8	1174	c.1103T>C	c.(1102-1104)GTT>GCT	p.V368A	ITGB7_uc001scc.2_Missense_Mutation_p.V368A|ITGB7_uc010snz.1_RNA	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	368	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						CAGCTCCCCAACTGCAGACTT	0.537													23	42					0	0	0.004656	0	0
MAP3K12	7786	broad.mit.edu	37	12	53880315	53880315	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:53880315C>T	uc001sdm.1	-	4	536	c.438G>A	c.(436-438)GGG>GGA	p.G146G	MAP3K12_uc001sdn.1_Silent_p.G179G	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	146	Protein kinase.				histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						CCACCTCCTCCCCGTGGAAGC	0.582													20	33					0	0	0.008871	0	0
OR10A7	121364	broad.mit.edu	37	12	55614872	55614872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55614872G>A	uc010spf.1	+	1	64	c.64G>A	c.(64-66)GAG>AAG	p.E22K		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						AAACAACCCCGAGATGCAAGT	0.368													77	155					0	0	0.014410	0	0
OR6C6	283365	broad.mit.edu	37	12	55688823	55688823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55688823G>A	uc010sph.1	-	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						TTCCAAAAAGGAGAAATTACG	0.393													18	31					0	0	0.006122	0	0
OR6C1	390321	broad.mit.edu	37	12	55714592	55714592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55714592C>T	uc010spi.1	+	1	209	c.209C>T	c.(208-210)TCG>TTG	p.S70L		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TTAGAAATTTCGTTCACAACC	0.378													24	41					0	0	0.014323	0	0
OR6C3	254786	broad.mit.edu	37	12	55726022	55726022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55726022C>T	uc010spj.1	+	1	538	c.538C>T	c.(538-540)CCC>TCC	p.P180S		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGACTATTTTCCCCTCTTACA	0.408													84	163					0	0	0.014410	0	0
OR6C75	390323	broad.mit.edu	37	12	55759590	55759590	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55759590G>A	uc010spk.1	+	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TGAGTCAAAGGAAAAAAGCCT	0.398													24	57					0	0	0.003954	0	0
OR6C70	390327	broad.mit.edu	37	12	55863729	55863729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:55863729G>A	uc010spn.1	-	1	194	c.194C>T	c.(193-195)TCT>TTT	p.S65F		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCCAGAAAAGAGAAATTACG	0.408													20	44					0	0	0.008871	0	0
METTL7B	196410	broad.mit.edu	37	12	56075782	56075782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:56075782G>A	uc010spr.1	+	1	453	c.244G>A	c.(244-246)GGA>AGA	p.G82R		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	82							methyltransferase activity				0						CTGCGGAACCGGAGCCAACTT	0.572													19	27					0	0	0.007413	0	0
PAN2	9924	broad.mit.edu	37	12	56726705	56726705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:56726705C>T	uc001skx.2	-	2	547	c.174G>A	c.(172-174)ATG>ATA	p.M58I	PAN2_uc001skz.2_Missense_Mutation_p.M58I|PAN2_uc001sky.2_Missense_Mutation_p.M58I	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	58					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						AGACACCTTCCATTATGTGCA	0.557													37	68					0	0	0.003755	0	0
PIP4K2C	79837	broad.mit.edu	37	12	57987900	57987900	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:57987900C>T	uc001sou.2	+	2	398	c.267C>T	c.(265-267)TTC>TTT	p.F89F	PIP4K2C_uc001sot.2_Silent_p.F89F|PIP4K2C_uc010srs.1_Intron|PIP4K2C_uc010srt.1_Silent_p.F89F	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	89	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					ATCACCTTTTCCACAGGTAAG	0.428													11	29					0	0	0.010729	0	0
USP15	9958	broad.mit.edu	37	12	62797974	62797974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:62797974C>T	uc001src.1	+	22	2774	c.2765C>T	c.(2764-2766)TCC>TTC	p.S922F	USP15_uc001srb.1_Missense_Mutation_p.S893F	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	922					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		TTTTGACAGTCCAAAGCAGCA	0.388													65	136					0	0	0.014410	0	0
IRAK3	11213	broad.mit.edu	37	12	66638963	66638963	+	Missense_Mutation	SNP	G	A	A	rs146885838		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:66638963G>A	uc001sth.2	+	11	1337	c.1235G>A	c.(1234-1236)CGG>CAG	p.R412Q	IRAK3_uc010ssy.1_Missense_Mutation_p.R351Q	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	412	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		CCCTGCCCTCGGAATTTCTCT	0.478													49	81					0	0	0.014410	0	0
PTPRB	5787	broad.mit.edu	37	12	70983782	70983782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:70983782C>T	uc001swb.3	-	6	1388	c.1358G>A	c.(1357-1359)GGA>GAA	p.G453E	PTPRB_uc010sto.1_Missense_Mutation_p.G453E|PTPRB_uc010stp.1_Intron|PTPRB_uc001swc.3_Missense_Mutation_p.G671E|PTPRB_uc001swa.3_Missense_Mutation_p.G671E|PTPRB_uc001swd.3_Missense_Mutation_p.G670E|PTPRB_uc009zrr.1_Missense_Mutation_p.G550E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	453	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTTCAAATTTCCACTCTCAAC	0.453											OREG0021990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	57	114					0	0	0.014410	0	0
LGR5	8549	broad.mit.edu	37	12	71976280	71976280	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:71976280C>T	uc001swl.2	+	17	1645	c.1597C>T	c.(1597-1599)CTG>TTG	p.L533L	LGR5_uc001swm.2_Silent_p.L509L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	533	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TGAGGAAGACCTGAAAGCCCT	0.458													42	85					0	0	0.011902	0	0
ZDHHC17	23390	broad.mit.edu	37	12	77220806	77220806	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:77220806G>T	uc001syk.1	+	9	1179	c.1016G>T	c.(1015-1017)TGG>TTG	p.W339L	ZDHHC17_uc001syj.2_RNA	NM_015336	NP_056151	Q8IUH5	ZDH17_HUMAN	huntingtin interacting protein 14	339	Helical; (Potential).				lipoprotein transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|protein binding|protein-cysteine S-palmitoleyltransferase activity|signal transducer activity|zinc ion binding				0						GGTGGTGTTTGGGCTACAGTA	0.313													42	53					2.35958e-20	2.4323e-20	0.009718	1	0
SYT1	6857	broad.mit.edu	37	12	79679683	79679683	+	Missense_Mutation	SNP	G	A	A	rs138582600		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:79679683G>A	uc001sys.2	+	6	954	c.283G>A	c.(283-285)GAA>AAA	p.E95K	SYT1_uc001syt.2_Missense_Mutation_p.E95K|SYT1_uc001syu.2_Missense_Mutation_p.E95K|SYT1_uc001syv.2_Missense_Mutation_p.E95K	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	95	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity	p.E95K(1)		skin(3)|pancreas(2)|ovary(1)	6						GAAGGGAAAGGAAAAAGGAGG	0.348													18	42					0	0	0.006122	0	0
SYT1	6857	broad.mit.edu	37	12	79693249	79693249	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:79693249A>G	uc001sys.2	+	9	1399	c.728A>G	c.(727-729)GAA>GGA	p.E243G	SYT1_uc001syt.2_Missense_Mutation_p.E243G|SYT1_uc001syu.2_Missense_Mutation_p.E240G|SYT1_uc001syv.2_Missense_Mutation_p.E243G	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	243	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 1.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						ATCATTGGAGAATTTAAAGTC	0.413													43	84					0	0	0.009718	0	0
LIN7A	8825	broad.mit.edu	37	12	81283035	81283035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:81283035G>A	uc001szj.1	-	2	389	c.196C>T	c.(196-198)CGA>TGA	p.R66*	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	66	L27.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						CATACCTCTCGAATAGCTGTA	0.343													26	37					0	0	0.005443	0	0
PPFIA2	8499	broad.mit.edu	37	12	81768449	81768449	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:81768449C>T	uc001szo.1	-	11	1391	c.1230G>A	c.(1228-1230)GAG>GAA	p.E410E	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	336										ovary(3)|lung(2)|pancreas(1)	6						CCAGTTCAGCCTCTACTTCAG	0.428													29	60					0	0	0.006320	0	0
C12orf26	84190	broad.mit.edu	37	12	82871080	82871080	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:82871080C>T	uc001szq.2	+	11	1689	c.1668C>T	c.(1666-1668)CCC>CCT	p.P556P		NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	556											0						TACTGGCTCCCTGTATAGAGA	0.284													24	58					0	0	0.013726	0	0
MGAT4C	25834	broad.mit.edu	37	12	86377316	86377316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:86377316G>A	uc001tai.3	-	7	1530	c.280C>T	c.(280-282)CCT>TCT	p.P94S	MGAT4C_uc001tal.3_Missense_Mutation_p.P94S|MGAT4C_uc001taj.3_Missense_Mutation_p.P94S|MGAT4C_uc001tak.3_Missense_Mutation_p.P94S|MGAT4C_uc010sum.1_Missense_Mutation_p.P118S|MGAT4C_uc001tah.3_Missense_Mutation_p.P94S	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	94	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						CTTTGTAAAGGTGTGGCAGCT	0.313													47	98					0	0	0.014410	0	0
POLR3B	55703	broad.mit.edu	37	12	106895211	106895211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:106895211C>T	uc001tlp.2	+	26	3317	c.3095C>T	c.(3094-3096)ACC>ATC	p.T1032I	POLR3B_uc001tlq.2_Missense_Mutation_p.T974I	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	1032					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GCCGTCCTTACCAGGTAAGAG	0.443													21	26					0	0	0.014323	0	0
BTBD11	121551	broad.mit.edu	37	12	108008853	108008853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:108008853C>T	uc001tmk.1	+	7	2436	c.1915C>T	c.(1915-1917)CAT>TAT	p.H639Y	BTBD11_uc009zut.1_Missense_Mutation_p.H639Y|BTBD11_uc001tmj.2_Missense_Mutation_p.H639Y|BTBD11_uc001tml.1_Missense_Mutation_p.H176Y	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	639						integral to membrane	DNA binding			skin(2)|ovary(1)	3						CAGTACTCCTCATAAATATCC	0.418													26	35					0	0	0.005443	0	0
BTBD11	121551	broad.mit.edu	37	12	108011078	108011078	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:108011078G>A	uc001tmk.1	+	9	2617	c.2096G>A	c.(2095-2097)GGA>GAA	p.G699E	BTBD11_uc009zut.1_Intron|BTBD11_uc001tmj.2_Missense_Mutation_p.G699E|BTBD11_uc001tml.1_Missense_Mutation_p.G236E	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	699	ANK 3.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						GGGCTTGCAGGAAATTTTGAG	0.502													55	118					0	0	0.014410	0	0
SSH1	54434	broad.mit.edu	37	12	109201541	109201542	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:109201541_109201542CC>TT	uc001tnm.2	-	8	685_686	c.598_599GG>AA	c.(598-600)GGG>AAG	p.G200K	SSH1_uc001tnl.2_5'Flank|SSH1_uc010sxg.1_Missense_Mutation_p.G211K|SSH1_uc001tnn.3_Missense_Mutation_p.G200K|SSH1_uc001tno.1_Missense_Mutation_p.G104K	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	200					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						AGCTACACCCCCGGGGAAGTAG	0.614													18	38					0	0	0.004672	0	0
ANAPC7	51434	broad.mit.edu	37	12	110824147	110824147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:110824147G>A	uc001tqo.2	-	6	905	c.904C>T	c.(904-906)CCT>TCT	p.P302S	ANAPC7_uc001tqp.3_Missense_Mutation_p.P302S	NM_016238	NP_057322	Q9UJX3	APC7_HUMAN	anaphase-promoting complex subunit 7 isoform a	302	TPR 3.			P -> L (in Ref. 1; AAF05754).	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding				0						ATCAGATAAGGATCCAACATC	0.438													142	224					0	0	0.014410	0	0
TESC	54997	broad.mit.edu	37	12	117494655	117494655	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:117494655G>A	uc001twh.2	-	3	329	c.324C>T	c.(322-324)CTC>CTT	p.L108L	TESC_uc001twi.2_RNA	NM_017899	NP_060369	Q96BS2	TESC_HUMAN	tescalcin	55					negative regulation of cell proliferation|positive regulation of megakaryocyte differentiation|positive regulation of transcription, DNA-dependent|regulation of cell adhesion mediated by integrin	cytoplasm|lamellipodium|nucleus|plasma membrane|ruffle	calcium ion binding|magnesium ion binding|phosphatase inhibitor activity|protein binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0297)		GGATGGGGTTGAGCTCCAGGT	0.517													47	46					0	0	0.014410	0	0
NOS1	4842	broad.mit.edu	37	12	117696847	117696847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:117696847G>A	uc001twm.1	-	15	3142	c.2456C>T	c.(2455-2457)CCC>CTC	p.P819L	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	819	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATTCTCAGGGGGATCTCCATT	0.502													23	43					0	0	0.003330	0	0
OASL	8638	broad.mit.edu	37	12	121458598	121458598	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:121458598G>A	uc001tzj.1	-	6	1317	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F	OASL_uc001tzk.1_3'UTR	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	437	Ubiquitin-like 2.				interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GATTCTTCACGAAGACCTGGA	0.542													33	73					0	0	0.003271	0	0
DNAH10	196385	broad.mit.edu	37	12	124285839	124285839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:124285839G>A	uc001uft.3	+	15	2145	c.2120G>A	c.(2119-2121)GGG>GAG	p.G707E	DNAH10_uc010tav.1_Missense_Mutation_p.G249E|DNAH10_uc010taw.1_Missense_Mutation_p.G192E	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	707	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TACACAGCTGGGATACAGCGC	0.463													79	182					0	0	0.014410	0	0
DNAH10	196385	broad.mit.edu	37	12	124399434	124399434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:124399434C>T	uc001uft.3	+	61	10281	c.10256C>T	c.(10255-10257)TCC>TTC	p.S3419F		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3419	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GATGAGCTCTCCGTTCAGAAT	0.557													10	13					0	0	0.013537	0	0
POLE	5426	broad.mit.edu	37	12	133209066	133209066	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:133209066G>A	uc001uks.1	-	45	6209	c.6165C>T	c.(6163-6165)GTC>GTT	p.V2055V	POLE_uc001ukq.1_Silent_p.V265V|POLE_uc001ukr.1_Silent_p.V859V|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	2055					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GCTCATTTGCGACATAATCCT	0.522								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					35	84					0	0	0.004289	0	0
GOLGA3	2802	broad.mit.edu	37	12	133381570	133381570	+	Silent	SNP	G	A	A	rs149503883	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:133381570G>A	uc001ukz.1	-	7	1888	c.1329C>T	c.(1327-1329)GCC>GCT	p.A443A	GOLGA3_uc001ula.1_Silent_p.A443A|GOLGA3_uc001ulb.2_Silent_p.A443A	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	443	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		TGCTGAGGGCGGCCAGCTGGG	0.562													18	34					0	0	0.006122	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748259	19748259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:19748259C>T	uc009zzj.2	-	5	1146	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	366					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GGCCAGGTCTCCCCCAGGGAC	0.582													21	77					0	0	0.010504	0	0
SKA3	221150	broad.mit.edu	37	13	21746782	21746782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:21746782G>A	uc001unt.2	-	2	236	c.142C>T	c.(142-144)CAT>TAT	p.H48Y	SKA3_uc001unv.2_Intron|SKA3_uc001unu.2_Missense_Mutation_p.H48Y	NM_145061	NP_659498	Q8IX90	SKA3_HUMAN	SKA3	48					cell division|chromosome segregation|mitosis|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytoplasm|spindle microtubule	protein binding				0						ACTTCTGAATGAAGGTCATAT	0.284													17	18					0	0	0.006122	0	0
MIPEP	4285	broad.mit.edu	37	13	24443560	24443560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:24443560G>A	uc001uox.3	-	7	914	c.814C>T	c.(814-816)CTT>TTT	p.L272F		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	272					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		TTGGGATAAAGAAAAATTTTA	0.398													43	35					0	0	0.007835	0	0
ATP12A	479	broad.mit.edu	37	13	25283956	25283956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:25283956G>A	uc001upp.2	+	19	2940	c.2753G>A	c.(2752-2754)GGG>GAG	p.G918E	ATP12A_uc010aaa.2_Missense_Mutation_p.G924E	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	918	Lumenal (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GACAGCTATGGGCAGGAATGG	0.537													40	97					0	0	0.009718	0	0
CDX2	1045	broad.mit.edu	37	13	28539058	28539058	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:28539058G>A	uc001urv.2	-	2	810	c.636C>T	c.(634-636)ACC>ACT	p.T212T		NM_001265	NP_001256	Q99626	CDX2_HUMAN	caudal type homeobox 2	212	Homeobox.				organ morphogenesis|transcription from RNA polymerase II promoter		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(110;0.191)|all_hematologic(3;0.0447)|Acute lymphoblastic leukemia(6;0.155)	Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	GBM - Glioblastoma multiforme(144;0.0407)|all cancers(112;0.0491)|OV - Ovarian serous cystadenocarcinoma(117;0.199)		TCCTCCGGATGGTGATGTAGC	0.617			T	ETV6	AML								14	34					0	0	0.002450	0	0
MTUS2	23281	broad.mit.edu	37	13	29600626	29600626	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:29600626C>T	uc001usl.3	+	1	1879	c.1821C>T	c.(1819-1821)ATC>ATT	p.I607I		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	597						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CCAGTGGGATCCCCAAGCCTG	0.532													10	49					0	0	0.008291	0	0
NBEA	26960	broad.mit.edu	37	13	35733844	35733844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:35733844G>A	uc001uvb.2	+	23	3742	c.3536G>A	c.(3535-3537)GGT>GAT	p.G1179D	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1179						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GTACATCTTGGTGTTAGTGAT	0.353													23	15					0	0	0.003954	0	0
MAB21L1	4081	broad.mit.edu	37	13	36050131	36050131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:36050131C>T	uc001uvc.2	-	1	702	c.145G>A	c.(145-147)GAG>AAG	p.E49K	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	49					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		AACCGCGGCTCCTGCACTTCC	0.512													90	76					0	0	0.014410	0	0
NBEA	26960	broad.mit.edu	37	13	36220454	36220454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:36220454C>T	uc001uvb.2	+	50	7882	c.7676C>T	c.(7675-7677)CCA>CTA	p.P2559L	NBEA_uc010abi.2_Missense_Mutation_p.P1215L|NBEA_uc010tee.1_Missense_Mutation_p.P352L|NBEA_uc010tef.1_Missense_Mutation_p.P352L|NBEA_uc001uvd.2_Missense_Mutation_p.P137L	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2559	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CTTATTGAGCCACATCCGCCT	0.443													15	35					0	0	0.006122	0	0
TRPC4	7223	broad.mit.edu	37	13	38266349	38266349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:38266349G>A	uc001uws.2	-	4	1256	c.1021C>T	c.(1021-1023)CCT>TCT	p.P341S	TRPC4_uc010abv.2_Intron|TRPC4_uc001uwt.2_Missense_Mutation_p.P341S|TRPC4_uc010tey.1_Missense_Mutation_p.P341S|TRPC4_uc010abw.2_Missense_Mutation_p.P168S|TRPC4_uc010abx.2_Missense_Mutation_p.P341S|TRPC4_uc010aby.2_Missense_Mutation_p.P341S	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	341	Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GAGAAGACAGGAAAAAGAAGT	0.473													33	35					0	0	0.013726	0	0
NEK5	341676	broad.mit.edu	37	13	52639552	52639552	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:52639552G>A	uc001vge.2	-	22	2258	c.2118C>T	c.(2116-2118)ATC>ATT	p.I706I		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	706							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		ATCACATCAGGATGAGCACTG	0.483													28	108					0	0	0.007291	0	0
PCDH20	64881	broad.mit.edu	37	13	61986627	61986627	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:61986627G>A	uc001vid.3	-	2	1969	c.1605C>T	c.(1603-1605)TTC>TTT	p.F535F	PCDH20_uc010thj.1_Silent_p.F535F	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	508	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AGGGTTGAAGGAAAATTGGAG	0.428													125	113					0	0	0.014410	0	0
EDNRB	1910	broad.mit.edu	37	13	78474728	78474728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:78474728G>A	uc001vko.2	-	5	1271	c.1013C>T	c.(1012-1014)CCC>CTC	p.P338L	EDNRB_uc001vkq.1_Missense_Mutation_p.P338L|uc001vkn.1_Intron|EDNRB_uc010aez.1_Missense_Mutation_p.P338L|EDNRB_uc001vkp.1_Missense_Mutation_p.P421L	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	338	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	GAGGTGAAGGGGAAGCCAGCA	0.433													41	51					0	0	0.006999	0	0
IPO5	3843	broad.mit.edu	37	13	98645174	98645174	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:98645174A>T	uc001vnf.1	+	7	763	c.698A>T	c.(697-699)GAT>GTT	p.D233V	IPO5_uc001vne.2_Missense_Mutation_p.D251V|IPO5_uc010tik.1_Missense_Mutation_p.D108V|IPO5_uc010til.1_Missense_Mutation_p.D173V	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	233	HEAT 1.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TACCAGAATGATGATTCTGTC	0.398													85	68					0	0	0.014410	0	0
ERCC5	2073	broad.mit.edu	37	13	103527856	103527856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:103527856C>T	uc001vpw.2	+	15	3607	c.3164C>T	c.(3163-3165)ACC>ATC	p.T1055I		NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	1055					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					AAAGGAAAAACCCAGAAGAGA	0.398			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				80	108					0	0	0.014410	0	0
COL4A1	1282	broad.mit.edu	37	13	110827604	110827604	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:110827604G>A	uc001vqw.3	-	37	3281	c.3159C>T	c.(3157-3159)GGC>GGT	p.G1053G	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1053	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TGCCAGGTGGGCCTGCCTGCC	0.592													35	88					0	0	0.007835	0	0
ZNF828	283489	broad.mit.edu	37	13	115090911	115090911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr13:115090911C>T	uc010ahb.2	+	3	1923	c.1594C>T	c.(1594-1596)CCC>TCC	p.P532S	ZNF828_uc001vuv.2_Missense_Mutation_p.P532S|ZNF828_uc010tko.1_Missense_Mutation_p.P532S	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	532	Mediates localization to the spindle and the kinetochore and is required for the attachment of spindle microtubules to the kinetochore.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TGCCCTGTTTCCCGAGCCTGC	0.557													112	310					0	0	0.014410	0	0
OR4M1	441670	broad.mit.edu	37	14	20249060	20249060	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:20249060C>T	uc010tku.1	+	1	579	c.579C>T	c.(577-579)TTC>TTT	p.F193F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCAACACCTTCCCAGAGGAGT	0.478													74	446					0	0	0.014410	0	0
OR4K2	390431	broad.mit.edu	37	14	20344704	20344704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:20344704C>T	uc001vwh.1	+	1	278	c.278C>T	c.(277-279)TCT>TTT	p.S93F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAAACCATCTCTTTTGATGGC	0.393													61	373					0	0	0.014410	0	0
OR4K5	79317	broad.mit.edu	37	14	20388954	20388956	+	Missense_Mutation	TNP	GGG	AAA	AAA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:20388954_20388956GGG>AAA	uc010tkw.1	+	1	189_191	c.189_191GGG>AAA	c.(187-192)TTGGGA>TTAAAA	p.G64K		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACTTTCTCTTGGGAAACCTTTCC	0.433													78	496					0	0	0.004672	0	0
RNASE4	6038	broad.mit.edu	37	14	21167737	21167737	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:21167737C>T	uc001vxy.3	+	2	770	c.207C>T	c.(205-207)CGC>CGT	p.R69R	RNASE4_uc001vxx.3_RNA|RNASE4_uc001vya.2_Silent_p.R69R	NM_002937	NP_002928	P34096	RNAS4_HUMAN	ribonuclease, RNase A family, 4 precursor	69	Substrate binding.				mRNA cleavage	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			central_nervous_system(1)	1	all_cancers(95;0.00304)		Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	GBM - Glioblastoma multiforme(265;0.0133)		ACTGCAAGCGCTTCAACACCT	0.493													37	68					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	14	22180841	22180841	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:22180841C>T	uc010tme.1	+	3		c.160C>T			uc001wbm.2_Missense_Mutation_p.S38L					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		GTGGCATCTTCAGAGGGAGCT	0.448													55	100					0	0	0.014410	0	0
CTSG	1511	broad.mit.edu	37	14	25043947	25043947	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:25043947C>T	uc001wpq.2	-	3	310	c.273G>A	c.(271-273)GCG>GCA	p.A91A		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	91	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		TGGCTCTGCGCGCAGTGATGT	0.532													36	64					0	0	0.004289	0	0
GZMH	2999	broad.mit.edu	37	14	25075950	25075950	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:25075950C>T	uc001wpr.1	-	5	645	c.600G>A	c.(598-600)GGG>GGA	p.G200G	GZMH_uc010aly.1_Silent_p.G114G|GZMH_uc010alz.1_Missense_Mutation_p.G69E	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	200	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		CCCCGGAGTCCCCCTGTGAAC	0.532													23	49					0	0	0.004656	0	0
AKAP6	9472	broad.mit.edu	37	14	33292791	33292791	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:33292791G>A	uc001wrq.2	+	13	5942	c.5772G>A	c.(5770-5772)GGG>GGA	p.G1924G		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1924					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GTTCACATGGGAAAGAGATTT	0.378													26	45					0	0	0.004656	0	0
FBXO33	254170	broad.mit.edu	37	14	39870725	39870725	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:39870725G>A	uc001wvk.2	-	3	1389	c.1051C>T	c.(1051-1053)CTG>TTG	p.L351L		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33	351											0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		ATGTTGTCCAGAGACTTGTGC	0.428													44	65					0	0	0.014410	0	0
FANCM	57697	broad.mit.edu	37	14	45644608	45644608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:45644608C>T	uc001wwd.3	+	14	2750	c.2651C>T	c.(2650-2652)TCC>TTC	p.S884F	FANCM_uc010anf.2_Missense_Mutation_p.S858F|FANCM_uc001wwe.3_Missense_Mutation_p.S420F|FANCM_uc010ang.2_Missense_Mutation_p.S98F	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	884					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GACAGAAATTCCACTGTTGAA	0.269								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				33	73					0	0	0.012213	0	0
PELI2	57161	broad.mit.edu	37	14	56757086	56757087	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:56757086_56757087CC>TT	uc001xch.2	+	5	894_895	c.608_609CC>TT	c.(607-609)TCC>TTT	p.S203F		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	203					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						ACCGAGGAGTCCCAGCCCGGGG	0.589													27	75					0	0	0.004672	0	0
DACT1	51339	broad.mit.edu	37	14	59112267	59112267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:59112267C>T	uc001xdw.2	+	4	1090	c.926C>T	c.(925-927)TCT>TTT	p.S309F	DACT1_uc010trv.1_Missense_Mutation_p.S28F|DACT1_uc001xdx.2_Missense_Mutation_p.S272F|DACT1_uc010trw.1_Missense_Mutation_p.S28F	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	309					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						TGCGGTGGATCTGAGCTAGAT	0.522													20	42					0	0	0.014323	0	0
MNAT1	4331	broad.mit.edu	37	14	61264836	61264836	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:61264836C>G	uc001xfd.2	+	3	385	c.274C>G	c.(274-276)CTA>GTA	p.L92V	MNAT1_uc010apq.1_Missense_Mutation_p.L92V|MNAT1_uc001xfe.2_Missense_Mutation_p.L92V	NM_002431	NP_002422	P51948	MAT1_HUMAN	menage a trois 1 (CAK assembly factor)	92					cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein complex assembly|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	cytoplasm|holo TFIIH complex	protein N-terminus binding|zinc ion binding			ovary(1)|lung(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.0174)		TTTTCCTAGTCTAAGAGAATA	0.279								Direct_reversal_of_damage|NER					26	52					0	0	0.012213	0	0
SYNE2	23224	broad.mit.edu	37	14	64484368	64484368	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:64484368G>A	uc001xgm.2	+	34	5173	c.4943G>A	c.(4942-4944)TGG>TAG	p.W1648*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.W1648*	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1648	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CTAGCTTTGTGGGACAAACTT	0.338													56	114					0	0	0.014410	0	0
ESR2	2100	broad.mit.edu	37	14	64727429	64727429	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:64727429C>T	uc001xha.1	-	5	1158	c.690G>A	c.(688-690)CGG>CGA	p.R230R	ESR2_uc001xgu.2_Silent_p.R230R|ESR2_uc001xgv.2_Silent_p.R230R|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Silent_p.R230R|ESR2_uc001xgy.1_Silent_p.R230R|ESR2_uc001xgz.1_Silent_p.R230R|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Silent_p.R230R|ESR2_uc010aqd.1_RNA	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	230	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	TTCTCTGTCTCCGCACAAGGC	0.612													19	36					0	0	0.014323	0	0
SPTB	6710	broad.mit.edu	37	14	65252492	65252492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:65252492C>T	uc001xht.2	-	16	3793	c.3739G>A	c.(3739-3741)GAG>AAG	p.E1247K	SPTB_uc001xhr.2_Missense_Mutation_p.E1247K|SPTB_uc001xhs.2_Missense_Mutation_p.E1247K|SPTB_uc001xhu.2_Missense_Mutation_p.E1247K	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1247	Spectrin 10.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGCACCTTCTCCTTGATCTTG	0.577													89	160					0	0	0.014410	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68274415	68274415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:68274415G>A	uc001xka.2	-	5	725	c.586C>T	c.(586-588)CTC>TTC	p.L196F	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.L196F|ZFYVE26_uc010tta.1_Missense_Mutation_p.L196F	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	196					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TTTCGAATGAGGTCCACCAGT	0.632													62	86					0	0	0.014410	0	0
SMOC1	64093	broad.mit.edu	37	14	70459140	70459140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:70459140G>A	uc001xls.1	+	6	786	c.533G>A	c.(532-534)GGG>GAG	p.G178E	SMOC1_uc001xlt.1_Missense_Mutation_p.G178E	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	178					cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		TCAGATGACGGGTCTAAGCCG	0.443													18	24					0	0	0.014323	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72196961	72196961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:72196961C>T	uc001xms.2	+	18	5215	c.4867C>T	c.(4867-4869)CCC>TCC	p.P1623S	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P1602S|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P1602S|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P1623S|SIPA1L1_uc010ttm.1_Missense_Mutation_p.P1077S|SIPA1L1_uc001xmw.2_Missense_Mutation_p.P388S	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1623					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CCCTTCTCTCCCCAAGTCGCT	0.542													36	50					0	0	0.006230	0	0
DPF3	8110	broad.mit.edu	37	14	73141062	73141062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:73141062C>T	uc001xnc.2	-	8	770	c.757G>A	c.(757-759)GAT>AAT	p.D253N	DPF3_uc001xnd.1_RNA|DPF3_uc001xnf.2_RNA|DPF3_uc010ari.1_Missense_Mutation_p.D253N|DPF3_uc010ttq.1_Missense_Mutation_p.D263N	NM_012074	NP_036206	Q92784	DPF3_HUMAN	D4, zinc and double PHD fingers, family 3	253					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex	nucleic acid binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00649)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		ACTGTTCCATCCGGTCCTTTC	0.493													6	17					0	0	0.001168	0	0
VASH1	22846	broad.mit.edu	37	14	77242550	77242550	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:77242550G>A	uc001xst.2	+	5	1776	c.846G>A	c.(844-846)GTG>GTA	p.V282V		NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1	282					cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		TGCTGGACGTGGAGCGCCTGG	0.607													8	21					0	0	0.010729	0	0
NGB	58157	broad.mit.edu	37	14	77732890	77732890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:77732890C>T	uc001xtg.1	-	4	820	c.445G>A	c.(445-447)GAT>AAT	p.D149N		NM_021257	NP_067080	Q9NPG2	NGB_HUMAN	neuroglobin	149	Globin.					hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0273)		TACTCGCCATCCCAGCCTCGA	0.637													25	50					0	0	0.006320	0	0
TSHR	7253	broad.mit.edu	37	14	81606081	81606081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:81606081G>A	uc001xvd.1	+	9	907	c.751G>A	c.(751-753)GAA>AAA	p.E251K		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	251	Extracellular (Potential).|LRR 7.				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	GCACCTGAAGGAACTGATAGC	0.512			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						26	52					0	0	0.005443	0	0
TSHR	7253	broad.mit.edu	37	14	81609961	81609961	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:81609961G>A	uc001xvd.1	+	10	1715	c.1559G>A	c.(1558-1560)TGG>TAG	p.W520*		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	520	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CTGGAGCGCTGGTATGCCATC	0.597			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						21	33					0	0	0.012319	0	0
CATSPERB	79820	broad.mit.edu	37	14	92126199	92126200	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:92126199_92126200CC>TT	uc001xzs.1	-	15	1553_1554	c.1413_1414GG>AA	c.(1411-1416)AAGGTT>AAAATT	p.V472I	CATSPERB_uc010aub.1_Intron	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	472					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GTCGAGTAAACCTTTCCACGTT	0.337													19	57					0	0	0.004672	0	0
SLC24A4	123041	broad.mit.edu	37	14	92953117	92953117	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:92953117G>A	uc001yak.2	+	14	1503	c.1479G>A	c.(1477-1479)GCG>GCA	p.A493A	SLC24A4_uc001yai.2_Silent_p.A446A|SLC24A4_uc010twm.1_Silent_p.A491A|SLC24A4_uc001yaj.2_Silent_p.A474A|SLC24A4_uc010auj.2_Silent_p.A382A|SLC24A4_uc010twn.1_Silent_p.A266A|SLC24A4_uc001yan.2_Silent_p.A204A	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	510	Cytoplasmic (Potential).|Alpha-2.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TAATTGTGGCGAGACAAGGTA	0.527													10	21					0	0	0.006214	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912840	94912840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:94912840C>T	uc001ydd.1	-	3	805	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	249					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CTGTGCATTTCCTTTTGGTGC	0.527													47	78					0	0	0.014410	0	0
SERPINA9	327657	broad.mit.edu	37	14	94929540	94929540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:94929540G>A	uc001ydf.2	-	5	1359	c.1198C>T	c.(1198-1200)CCC>TCC	p.P400S	SERPINA9_uc001yde.2_Missense_Mutation_p.P300S|SERPINA9_uc010avc.2_Missense_Mutation_p.P251S|SERPINA9_uc001ydg.2_Missense_Mutation_p.P364S	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	382					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		AAGTAAGAGGGGCCATCCTTC	0.498													37	82					0	0	0.006999	0	0
SERPINA3	12	broad.mit.edu	37	14	95080882	95080882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:95080882C>T	uc001ydp.2	+	2	183	c.104C>T	c.(103-105)ACC>ATC	p.T35I	SERPINA3_uc001ydo.3_Missense_Mutation_p.T60I|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.T35I|SERPINA3_uc001yds.2_Missense_Mutation_p.T35I|SERPINA3_uc010avg.2_Missense_Mutation_p.T35I	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	35					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GAGAATCTGACCCAGGAGAAC	0.587													37	68					0	0	0.005524	0	0
SERPINA3	12	broad.mit.edu	37	14	95081291	95081291	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:95081291G>A	uc001ydp.2	+	2	592	c.513G>A	c.(511-513)CAG>CAA	p.Q171Q	SERPINA3_uc001ydo.3_Silent_p.Q196Q|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.Q171Q|SERPINA3_uc001yds.2_Silent_p.Q171Q|SERPINA3_uc010avg.2_Silent_p.Q171Q	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	171					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CTGACTTTCAGGACTCAGCTG	0.498													29	49					0	0	0.007291	0	0
SETD3	84193	broad.mit.edu	37	14	99865352	99865352	+	Silent	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:99865352A>C	uc001ygc.2	-	13	1619	c.1449T>G	c.(1447-1449)GCT>GCG	p.A483A		NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	483					peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				CCCGGTTGACAGCTGCACTCT	0.473													54	88					0	0	0.014410	0	0
C14orf68	283600	broad.mit.edu	37	14	100795883	100795883	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:100795883G>A	uc001yhc.2	+	6	901	c.828G>A	c.(826-828)AAG>AAA	p.K276K	C14orf68_uc001yhd.2_Silent_p.K130K	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	276	Helical; Name=6; (Potential).|Solcar 3.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				TCCTTTTCAAGGGGCTGGTAC	0.637													41	69					0	0	0.006230	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103436544	103436544	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:103436544G>A	uc001ymi.1	-	14	2171	c.1939C>T	c.(1939-1941)CGT>TGT	p.R647C		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	647	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CTGTGCTCACGAAGCTTGCGC	0.537													9	13					0	0	0.008291	0	0
INF2	64423	broad.mit.edu	37	14	105173364	105173364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:105173364C>T	uc001ypb.2	+	7	1104	c.961C>T	c.(961-963)CGG>TGG	p.R321W	INF2_uc010tyi.1_Missense_Mutation_p.R321W|INF2_uc001ypc.2_Missense_Mutation_p.R321W|INF2_uc010awz.1_5'Flank	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	321	GBD/FH3.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		CCTCGTGAACCGGGCCGTGCT	0.711													7	11					0	0	0.001984	0	0
JAG2	3714	broad.mit.edu	37	14	105624096	105624096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:105624096G>A	uc001yqg.2	-	3	826	c.422C>T	c.(421-423)TCC>TTC	p.S141F	JAG2_uc001yqh.2_Missense_Mutation_p.S141F	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	141	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GAGGGTAAAGGAGCGCTGCAG	0.657													2	0					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106208682	106208682	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:106208682G>A	uc010tyt.1	-	3626		c.58650C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						GCTTACCTGGGCACGGTGGGC	0.607													58	110					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106471665	106471665	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:106471665C>T	uc010tyt.1	-	1890		c.36529G>A								Parts of antibodies, mostly variable regions.												0						AAAGAGGATCCTCCAGGTCCA	0.557													21	30					0	0	0.003954	0	0
ADAM6	8755	broad.mit.edu	37	14	106725270	106725271	+	RNA	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:106725270_106725271GG>AA	uc010tyt.1	-	588		c.18276_18277CC>TT								Parts of antibodies, mostly variable regions.												0						GCGTGTTCTTGGAATTGTCTCT	0.535													87	478					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	107178915	107178915	+	RNA	SNP	G	A	A	rs117736733	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:107178915G>A	uc010tyt.1	-	32		c.2323C>T								Parts of antibodies, mostly variable regions.												0						GAGATGGTGAGCCTGGTCTTC	0.517													49	137					0	0	0.014410	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414190	22414190	+	Silent	SNP	T	C	C	rs28695837	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:22414190T>C	uc001yuf.2	+	1	489	c.489T>C	c.(487-489)CAT>CAC	p.H163H		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GCACCACCCATATCATTGTTA	0.493													4	132					0	0	0.000602	0	0
ATP10A	57194	broad.mit.edu	37	15	25959073	25959073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:25959073G>A	uc010ayu.2	-	10	2198	c.2092C>T	c.(2092-2094)CCG>TCG	p.P698S		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	698	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCCTCATCCGGGCTCTCCGCC	0.662													24	37					0	0	0.003330	0	0
OCA2	4948	broad.mit.edu	37	15	28196952	28196952	+	Silent	SNP	G	A	A	rs138985876		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:28196952G>A	uc001zbh.3	-	18	2039	c.1929C>T	c.(1927-1929)GTC>GTT	p.V643V	OCA2_uc010ayv.2_Silent_p.V619V	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	643	Extracellular (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GAATGCCAGGGACAAACGAAT	0.433									Oculocutaneous_Albinism				19	26					0	0	0.008871	0	0
HERC2	8924	broad.mit.edu	37	15	28478878	28478878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:28478878G>A	uc001zbj.2	-	28	4389	c.4283C>T	c.(4282-4284)CCC>CTC	p.P1428L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1428					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ATGCTCGGGGGGAAACATGAT	0.453													38	80					0	0	0.011902	0	0
OTUD7A	161725	broad.mit.edu	37	15	31851206	31851206	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:31851206G>A	uc001zfq.2	-	3	609	c.516C>T	c.(514-516)ATC>ATT	p.I172I	OTUD7A_uc001zfr.2_Silent_p.I172I|OTUD7A_uc001zfs.1_RNA|OTUD7A_uc010baa.1_Silent_p.I172I	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	172	TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		TTGCCTGCTCGATCAAGTCCC	0.567													17	25					0	0	0.007413	0	0
C15orf55	256646	broad.mit.edu	37	15	34648549	34648549	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:34648549A>G	uc001zif.2	+	7	2411	c.2256A>G	c.(2254-2256)GTA>GTG	p.V752V	C15orf55_uc010ucc.1_Silent_p.V780V|C15orf55_uc010ucd.1_Silent_p.V770V	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	752						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		AGAAGTGTGTAACTGAGTATC	0.542			T	BRD3|BRD4	lethal midline carcinoma								32	51					0	0	0.010818	0	0
CASC5	57082	broad.mit.edu	37	15	40913692	40913692	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:40913692C>T	uc010bbs.1	+	11	1469	c.1308C>T	c.(1306-1308)GCC>GCT	p.A436A	CASC5_uc010ucq.1_Silent_p.A260A|CASC5_uc001zme.2_Silent_p.A410A|CASC5_uc010bbt.1_Silent_p.A410A	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	436	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		GAATATTAGCCATGACCCCAG	0.363													64	137					0	0	0.014410	0	0
DLL4	54567	broad.mit.edu	37	15	41228768	41228768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:41228768C>T	uc001zng.1	+	9	1903	c.1583C>T	c.(1582-1584)CCC>CTC	p.P528L		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	528	Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		CCCAGCTTCCCCTGGGTGGCC	0.667													5	9					0	0	0.001168	0	0
TP53BP1	7158	broad.mit.edu	37	15	43713259	43713259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:43713259C>T	uc001zrs.2	-	20	4347	c.4199G>A	c.(4198-4200)CGA>CAA	p.R1400Q	TP53BP1_uc010udp.1_Missense_Mutation_p.R1400Q|TP53BP1_uc001zrq.3_Missense_Mutation_p.R1405Q|TP53BP1_uc001zrr.3_Missense_Mutation_p.R1405Q|TP53BP1_uc010udq.1_Missense_Mutation_p.R1405Q	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1400	GAR.			R->K: Reduced methylation by PRMT1 (in vitro). Strongly reduced methylation; when associated with K-1398. Strongly reduced methylation; when associated with K-1401.|R->A: No detectable effect on methylation by PRMT1 (in vitro). Loss of methylation; when associated with A-1396; A-1398; A- 1401 and A-1403.	double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GCGGCCCCTTCGCCCACGCCC	0.582								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					49	95					0	0	0.014410	0	0
CTDSPL2	51496	broad.mit.edu	37	15	44811379	44811380	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:44811379_44811380CC>TT	uc001ztr.2	+	11	1541_1542	c.1125_1126CC>TT	c.(1123-1128)TTCCGT>TTTTGT	p.R376C	CTDSPL2_uc001zts.2_Missense_Mutation_p.R376C|CTDSPL2_uc001ztt.2_Missense_Mutation_p.R376C|CTDSPL2_uc010bdv.2_Missense_Mutation_p.R304C	NM_016396	NP_057480	Q05D32	CTSL2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	376	FCP1 homology.						phosphoprotein phosphatase activity				0		all_cancers(109;4.36e-14)|all_epithelial(112;9.8e-12)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.0122)		all cancers(107;1.02e-20)|GBM - Glioblastoma multiforme(94;1.49e-06)|COAD - Colon adenocarcinoma(120;0.0857)|Colorectal(105;0.0905)		ACCGGCTTTTCCGTGAACATTG	0.272													17	25					0	0	0.004672	0	0
C15orf43	145645	broad.mit.edu	37	15	45258395	45258395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:45258395G>A	uc001zuk.2	+	5	405	c.388G>A	c.(388-390)GAA>AAA	p.E130K		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	130											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		GACCCTTAGGGAAAACAGTGA	0.294													11	19					0	0	0.001855	0	0
DUOX1	53905	broad.mit.edu	37	15	45428573	45428573	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:45428573C>G	uc001zus.1	+	9	1236	c.890C>G	c.(889-891)CCC>CGC	p.P297R	DUOX1_uc001zut.1_Missense_Mutation_p.P297R|DUOX1_uc010bee.1_5'UTR	NM_017434	NP_059130	Q9NRD9	DUOX1_HUMAN	dual oxidase 1 precursor	297	Peroxidase-like; mediates peroxidase activity.|Extracellular (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|superoxide anion generation	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|NADP binding|peroxidase activity			ovary(5)|skin(2)|breast(1)	8		all_cancers(109;5.7e-11)|all_epithelial(112;4.65e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;5.77e-18)|GBM - Glioblastoma multiforme(94;5.11e-07)|COAD - Colon adenocarcinoma(120;0.071)|Colorectal(133;0.0717)		GAGTGGCTGCCCAGCTTCCTG	0.632													3	44					0	0	0.001984	0	0
SQRDL	58472	broad.mit.edu	37	15	45965900	45965900	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:45965900C>T	uc001zvt.2	+	6	744	c.555C>T	c.(553-555)TTC>TTT	p.F185F	SQRDL_uc001zvu.2_Silent_p.F185F|SQRDL_uc001zvv.2_Silent_p.F185F	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	185							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		TGCAGGACTTCAAAGAGGGCA	0.458													42	58					0	0	0.007835	0	0
SEMA6D	80031	broad.mit.edu	37	15	48063188	48063188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:48063188C>T	uc010bek.2	+	19	2788	c.2428C>T	c.(2428-2430)CCG>TCG	p.P810S	SEMA6D_uc001zvw.2_Missense_Mutation_p.P748S|SEMA6D_uc001zvy.2_Missense_Mutation_p.P810S|SEMA6D_uc001zvz.2_Missense_Mutation_p.P754S|SEMA6D_uc001zwa.2_3'UTR|SEMA6D_uc001zwb.2_Missense_Mutation_p.P748S|SEMA6D_uc001zwc.2_Missense_Mutation_p.P735S	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	810	Cytoplasmic (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		TCAGTTTTTTCCGTCTAGTCC	0.502													38	81					0	0	0.005524	0	0
SECISBP2L	9728	broad.mit.edu	37	15	49293278	49293278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:49293278G>A	uc001zxe.1	-	15	2178	c.2044C>T	c.(2044-2046)CTT>TTT	p.L682F	SECISBP2L_uc001zxd.1_Missense_Mutation_p.L637F|SECISBP2L_uc010bep.1_Missense_Mutation_p.L444F	NM_014701	NP_055516	Q93073	SBP2L_HUMAN	SECIS binding protein 2-like	682										breast(1)|skin(1)	2						TCTTTACAAAGAACCTGATTA	0.343													9	29					0	0	0.004482	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212592	50212592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:50212592C>T	uc001zxu.2	-	18	1916	c.1774G>A	c.(1774-1776)GGC>AGC	p.G592S	ATP8B4_uc010ber.2_Missense_Mutation_p.G465S|ATP8B4_uc010ufd.1_Missense_Mutation_p.G402S|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	592	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		GTCCGAAGGCCTTCCCCTGCA	0.423													21	37					0	0	0.008871	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51350382	51350382	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:51350382A>T	uc001zyy.2	-	3	675	c.575T>A	c.(574-576)ATT>AAT	p.I192N		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	192											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		CTTCTCCACAATAACCAGCTC	0.478													41	69					0	0	0.006999	0	0
CYP19A1	1588	broad.mit.edu	37	15	51507964	51507964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:51507964C>T	uc001zyz.3	-	8	1045	c.794G>A	c.(793-795)AGG>AAG	p.R265K	CYP19A1_uc001zza.3_Missense_Mutation_p.R265K|CYP19A1_uc001zzb.2_Missense_Mutation_p.R265K|CYP19A1_uc001zzc.1_RNA	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	265					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	TGTGGAAATCCTGCGTCTTTT	0.373													44	78					0	0	0.014410	0	0
MYO5C	55930	broad.mit.edu	37	15	52540959	52540959	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:52540959A>T	uc010bff.2	-	14	1821	c.1684T>A	c.(1684-1686)TTC>ATC	p.F562I	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	562	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TTCTCCAGGAAACCTTCACAT	0.368													25	38					0	0	0.004656	0	0
WDR72	256764	broad.mit.edu	37	15	53905868	53905868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:53905868C>T	uc002acj.2	-	16	2909	c.2867G>A	c.(2866-2868)CGA>CAA	p.R956Q		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	956										lung(1)|skin(1)	2				all cancers(107;0.0511)		CTTACCATTTCGTAAGCAACT	0.328													43	54					0	0	0.010771	0	0
CGNL1	84952	broad.mit.edu	37	15	57730863	57730863	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:57730863G>A	uc002aeg.2	+	2	742	c.666G>A	c.(664-666)GTG>GTA	p.V222V	CGNL1_uc010bfw.2_Silent_p.V222V	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	222	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GCAGCTCCGTGGTCATAGAGG	0.547													67	122					0	0	0.014410	0	0
CGNL1	84952	broad.mit.edu	37	15	57810594	57810594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:57810594G>A	uc002aeg.2	+	10	2690	c.2614G>A	c.(2614-2616)GAA>AAA	p.E872K	CGNL1_uc010bfw.2_Missense_Mutation_p.E872K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	872	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ATTGTAGGGAGAAATACGACA	0.473													10	13					0	0	0.010729	0	0
VPS13C	54832	broad.mit.edu	37	15	62165535	62165535	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:62165535C>T	uc002agz.2	-	78	10562	c.10488G>A	c.(10486-10488)AAG>AAA	p.K3496K	VPS13C_uc002aha.2_Silent_p.K3453K|VPS13C_uc002ahb.1_Silent_p.K3496K|VPS13C_uc002ahc.1_Silent_p.K3453K	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3496					protein localization					ovary(2)	2						GCTGATATTCCTTGTCCATTG	0.398													80	134					0	0	0.014410	0	0
TLN2	83660	broad.mit.edu	37	15	63040586	63040587	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:63040586_63040587GT>AA	uc002alb.3	+	30	4062_4063	c.4062_4063GT>AA	c.(4060-4065)CTGTGT>CTAAGT	p.C1355S	TLN2_uc002alc.3_5'UTR	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1355					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TCATCACTCTGTGTACCCAACA	0.475													48	75					0	0	0.004672	0	0
HERC1	8925	broad.mit.edu	37	15	63970328	63970328	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:63970328C>G	uc002amp.2	-	37	6934	c.6786G>C	c.(6784-6786)CAG>CAC	p.Q2262H		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2262					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CCTCTCGGCTCTGAACCGAGC	0.433													18	35					0	0	0.006122	0	0
SNX1	6642	broad.mit.edu	37	15	64410326	64410326	+	Silent	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:64410326G>T	uc002amv.2	+	3	318	c.282G>T	c.(280-282)GTG>GTT	p.V94V	SNX1_uc010bgv.2_Intron|SNX1_uc010uio.1_Silent_p.V94V|SNX1_uc002amw.2_Silent_p.V94V|SNX1_uc002amx.2_Intron|SNX1_uc002amy.2_Missense_Mutation_p.M23I|SNX1_uc010bgw.2_Intron	NM_003099	NP_003090	Q13596	SNX1_HUMAN	sorting nexin 1 isoform a	94					cell communication|early endosome to Golgi transport|endocytosis|intracellular protein transport	early endosome membrane|Golgi apparatus	phosphatidylinositol binding|protein binding|protein transporter activity				0						ATGCCACAGTGGAGCTATCCT	0.393													44	60					6.21074e-16	6.37757e-16	0.011902	1	0
TIPIN	54962	broad.mit.edu	37	15	66644506	66644506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:66644506C>T	uc002apr.2	-	3	259	c.173G>A	c.(172-174)AGA>AAA	p.R58K	TIPIN_uc010ujn.1_5'Flank|TIPIN_uc010ujo.1_5'UTR	NM_017858	NP_060328	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	58					cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			ovary(1)	1						TTTAACTGTTCTCTTTGGAGG	0.308													12	33					0	0	0.004656	0	0
ITGA11	22801	broad.mit.edu	37	15	68695276	68695276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:68695276C>T	uc002ari.2	-	2	232	c.145G>A	c.(145-147)GAC>AAC	p.D49N	ITGA11_uc010bib.2_Missense_Mutation_p.D49N	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	49	FG-GAP 1.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	CCACTGATGTCGTGCTGCTGC	0.627													6	12					0	0	0.001984	0	0
LARP6	55323	broad.mit.edu	37	15	71124496	71124496	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:71124496C>T	uc002ass.2	-	3	1442	c.1371G>A	c.(1369-1371)AAG>AAA	p.K457K		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	457					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						CAGTCTGCATCTTCCGGGAGA	0.647													26	124					0	0	0.013726	0	0
LARP6	55323	broad.mit.edu	37	15	71124524	71124525	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:71124524_71124525GG>AA	uc002ass.2	-	3	1413_1414	c.1342_1343CC>TT	c.(1342-1344)CCC>TTC	p.P448F		NM_018357	NP_060827	Q9BRS8	LARP6_HUMAN	La ribonucleoprotein domain family, member 6	448					RNA processing	Golgi apparatus|nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0						ACTCGTACCGGGGCTTTTCTCC	0.614													22	105					0	0	0.004672	0	0
SEMA7A	8482	broad.mit.edu	37	15	74711172	74711172	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:74711172G>A	uc002axv.2	-	2	340	c.300C>T	c.(298-300)TTC>TTT	p.F100F	SEMA7A_uc010ulk.1_5'UTR|SEMA7A_uc010ull.1_Silent_p.F100F	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	100	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						TGCCCTCGGGGAAGTCAAAGA	0.622													57	70					0	0	0.014410	0	0
IREB2	3658	broad.mit.edu	37	15	78764257	78764257	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:78764257C>T	uc002bdr.2	+	7	1036	c.874C>T	c.(874-876)CTG>TTG	p.L292L	IREB2_uc010unb.1_Silent_p.L42L|IREB2_uc002bdq.2_Silent_p.L292L	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	292							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		TTTAGGGATTCTGGGGTGGGG	0.353													17	60					0	0	0.006122	0	0
RASGRF1	5923	broad.mit.edu	37	15	79291164	79291164	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:79291164A>T	uc002beq.2	-	19	3173	c.2798T>A	c.(2797-2799)TTT>TAT	p.F933Y	RASGRF1_uc002bep.2_Missense_Mutation_p.F917Y|RASGRF1_uc010blm.1_Missense_Mutation_p.F842Y|RASGRF1_uc002ber.3_Missense_Mutation_p.F917Y|RASGRF1_uc010unh.1_Missense_Mutation_p.F328Y|RASGRF1_uc002beo.2_Missense_Mutation_p.F149Y	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	935					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GTCTGGGGGAAACCCTGGCAG	0.567													21	55					0	0	0.014323	0	0
ARNT2	9915	broad.mit.edu	37	15	80872806	80872806	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:80872806G>A	uc002bfr.2	+	16	1834	c.1668G>A	c.(1666-1668)ACG>ACA	p.T556T	ARNT2_uc010unm.1_Silent_p.T545T|ARNT2_uc002bfs.2_Silent_p.T545T	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	556					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			CTTCTTCCACGGGCCAGAACA	0.522													69	70					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	15	82620655	82620655	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:82620655C>T	uc010bls.1	+	1		c.748C>T								Homo sapiens mRNA for FLJ00317 protein.																		ATTTCCTCATCTGAAAATGAG	0.607													12	19					0	0	0.006122	0	0
AGBL1	123624	broad.mit.edu	37	15	86687045	86687045	+	Silent	SNP	C	T	T	rs138356654	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:86687045C>T	uc002blz.1	+	2	173	c.93C>T	c.(91-93)CTC>CTT	p.L31L		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	31					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TCCTGCCTCTCTTCCGGCTGC	0.507													34	50					0	0	0.013726	0	0
AGBL1	123624	broad.mit.edu	37	15	86807793	86807793	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:86807793A>G	uc002blz.1	+	10	1333	c.1253A>G	c.(1252-1254)AAA>AGA	p.K418R	AGBL1_uc002bma.1_Missense_Mutation_p.K149R|AGBL1_uc002bmb.1_Missense_Mutation_p.K112R	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	418					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GCTTCCCCGAAAGCAGATGCC	0.423													72	77					0	0	0.014410	0	0
MRPL46	26589	broad.mit.edu	37	15	89008963	89008963	+	Silent	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:89008963A>T	uc002bmj.2	-	2	295	c.270T>A	c.(268-270)CGT>CGA	p.R90R	MRPL46_uc002bmi.1_5'UTR|MRPL46_uc002bmk.2_Silent_p.R90R|MRPS11_uc002bmm.2_5'Flank|MRPS11_uc002bml.2_5'Flank|MRPS11_uc002bmn.2_5'Flank|MRPS11_uc010bnj.2_5'Flank	NM_022163	NP_071446	Q9H2W6	RM46_HUMAN	mitochondrial ribosomal protein L46 precursor	90						mitochondrion|ribosome	hydrolase activity			central_nervous_system(1)	1	Lung NSC(78;0.203)		BRCA - Breast invasive adenocarcinoma(143;0.188)			CATCCAGAGCACGAAGCTCGT	0.398													45	102					0	0	0.014410	0	0
ACAN	176	broad.mit.edu	37	15	89401900	89401900	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:89401900C>T	uc010upo.1	+	12	6458	c.6084C>T	c.(6082-6084)GCC>GCT	p.A2028A	ACAN_uc010upp.1_Silent_p.A2028A|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2028					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GTGGAGAGGCCTCAGGACTTC	0.507													18	40					0	0	0.004990	0	0
POLG	5428	broad.mit.edu	37	15	89873448	89873448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr15:89873448G>A	uc002bns.3	-	3	1001	c.719C>T	c.(718-720)TCG>TTG	p.S240L	POLG_uc002bnr.3_Missense_Mutation_p.S240L	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	240					base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			GTCAGCCGGCGACAGCTGGCT	0.607								DNA_polymerases_(catalytic_subunits)					44	26					0	0	0.013114	0	0
C16orf11	146325	broad.mit.edu	37	16	615297	615297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:615297C>T	uc002chk.2	+	3	1985	c.1706C>T	c.(1705-1707)GCC>GTC	p.A569V	NHLRC4_uc002chl.2_5'Flank|PIGQ_uc010bqw.2_5'Flank	NM_145270	NP_660313	P0CG20	CP011_HUMAN	hypothetical protein LOC146325	569										central_nervous_system(1)	1						CCCCAGGGCGCCGAGGTCTGA	0.682													9	8					0	0	0.008291	0	0
PIGQ	9091	broad.mit.edu	37	16	628883	628883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:628883G>A	uc002cho.2	+	6	1270	c.1168G>A	c.(1168-1170)GAC>AAC	p.D390N	PIGQ_uc010bqw.2_Missense_Mutation_p.D390N|PIGQ_uc002chn.2_Missense_Mutation_p.D390N|PIGQ_uc010uui.1_Missense_Mutation_p.D404N|PIGQ_uc002chp.2_5'Flank	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	390	Helical; (Potential).|Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				CCTCCTCTCGGACATTATCGC	0.642													32	36					0	0	0.013726	0	0
SOX8	30812	broad.mit.edu	37	16	1033775	1033775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:1033775G>A	uc002ckn.2	+	2	585	c.470G>A	c.(469-471)CGC>CAC	p.R157H	LMF1_uc002ckk.2_5'Flank|uc002ckm.1_5'Flank	NM_014587	NP_055402	P57073	SOX8_HUMAN	SRY (sex determining region Y)-box 8	157	HMG box.				adipose tissue development|enteric nervous system development|fat cell differentiation|in utero embryonic development|metanephric nephron tubule formation|morphogenesis of a branching epithelium|negative regulation of apoptosis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|neural crest cell migration|oligodendrocyte differentiation|osteoblast differentiation|peripheral nervous system development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of gliogenesis|positive regulation of osteoblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone levels|renal vesicle induction|retinal rod cell differentiation|Sertoli cell development|signal transduction|spermatogenesis|ureter morphogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2		Hepatocellular(780;0.00308)				GAGGCAGAGCGCCTTCGCGTG	0.687													19	29					0	0	0.010504	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270072	1270072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:1270072G>A	uc002cks.2	+	35	6388	c.6140G>A	c.(6139-6141)AGG>AAG	p.R2047K	CACNA1H_uc002ckt.2_Missense_Mutation_p.R2041K|CACNA1H_uc002cku.2_Missense_Mutation_p.R742K|CACNA1H_uc010brj.2_Missense_Mutation_p.R758K|CACNA1H_uc002ckv.2_Missense_Mutation_p.R736K	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2047	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	ACCCCGGTGAGGCCGGTGACC	0.662													3	7					0	0	0.004672	0	0
TBC1D24	57465	broad.mit.edu	37	16	2550412	2550412	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:2550412C>T	uc002cql.2	+	7	1586	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F	TBC1D24_uc002cqk.2_Silent_p.F476F|TBC1D24_uc002cqm.2_Intron|TBC1D24_uc010bsm.2_RNA	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	482	TLD.				neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						TCTCGCCCTTCCTGGCCGCTC	0.697													7	7					0	0	0.001984	0	0
SRRM2	23524	broad.mit.edu	37	16	2818193	2818193	+	Missense_Mutation	SNP	C	T	T	rs141595233		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:2818193C>T	uc002crk.2	+	11	8213	c.7664C>T	c.(7663-7665)TCC>TTC	p.S2555F	SRRM2_uc002crj.1_Missense_Mutation_p.S2459F|SRRM2_uc002crl.1_Missense_Mutation_p.S2555F|SRRM2_uc010bsu.1_Missense_Mutation_p.S2459F	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2555	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						tcctcctcctcctcTGGCTCC	0.368													13	20					0	0	0.013537	0	0
PKMYT1	9088	broad.mit.edu	37	16	3025725	3025725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:3025725G>A	uc002csn.2	-	4	910	c.467C>T	c.(466-468)GCC>GTC	p.A156V	PKMYT1_uc010uwn.1_RNA|PKMYT1_uc002csm.2_Missense_Mutation_p.A156V|PKMYT1_uc002cso.2_Missense_Mutation_p.A87V|PKMYT1_uc002csp.2_Missense_Mutation_p.A147V|PKMYT1_uc002csq.2_Missense_Mutation_p.A147V|PKMYT1_uc010bsy.1_Missense_Mutation_p.A147V	NM_004203	NP_004194	Q99640	PMYT1_HUMAN	protein kinase Myt1 isoform 1	156	Protein kinase.				G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis	endoplasmic reticulum membrane|Golgi membrane|membrane fraction|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1						GCCCACCTCGGCCAACTTGCG	0.682													19	26					0	0	0.007413	0	0
C16orf90	646174	broad.mit.edu	37	16	3544818	3544818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:3544818C>T	uc002cvi.2	-	2	106	c.106G>A	c.(106-108)GAG>AAG	p.E36K		NM_001080524	NP_001073993	A8MZG2	CP090_HUMAN	hypothetical protein LOC646174	26											0						AGGCCCCCCTCGTAGATGTTG	0.716													13	19					0	0	0.002450	0	0
SRL	6345	broad.mit.edu	37	16	4254583	4254583	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:4254583G>A	uc002cvz.3	-	2	127	c.114C>T	c.(112-114)ATC>ATT	p.I38I	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	497						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						GGGTCTTCTCGATGTGGGAGC	0.572													37	69					0	0	0.007835	0	0
C16orf5	29965	broad.mit.edu	37	16	4564078	4564078	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:4564078C>T	uc002cwu.2	-	2	349	c.54G>A	c.(52-54)CTG>CTA	p.L18L	C16orf5_uc002cwv.2_Silent_p.L18L|C16orf5_uc002cww.2_Silent_p.L18L|C16orf5_uc010uxl.1_Silent_p.L18L|C16orf5_uc010uxm.1_Silent_p.L18L|C16orf5_uc010btu.2_Intron	NM_013399	NP_037531	Q9H305	LITFL_HUMAN	cell death inducing protein	18	Pro-rich.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|tumor necrosis factor-mediated signaling pathway	nucleus				ovary(1)	1		Ovarian(90;0.17)				TTTTCTCTTCCAGAAGTGGGG	0.607													6	12					0	0	0.001984	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857369	9857369	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:9857369G>A	uc002czo.3	-	13	4580	c.4032C>T	c.(4030-4032)TTC>TTT	p.F1344F	GRIN2A_uc010uym.1_Silent_p.F1344F|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1344	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GACCTTGGGGGAAAAGGGAGC	0.537													20	56					0	0	0.007413	0	0
MYH11	4629	broad.mit.edu	37	16	15829411	15829411	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:15829411C>T	uc002ddy.2	-	26	3425	c.3318G>A	c.(3316-3318)AAG>AAA	p.K1106K	MYH11_uc002ddv.2_Silent_p.K1113K|MYH11_uc002ddw.2_Silent_p.K1106K|MYH11_uc002ddx.2_Silent_p.K1113K|MYH11_uc010bvg.2_Silent_p.K938K	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1106	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GGGCATTGTTCTTCTGAGCGA	0.547			T	CBFB	AML								41	73					0	0	0.011902	0	0
ABCC6	368	broad.mit.edu	37	16	16272784	16272784	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:16272784G>A	uc002den.3	-	18	2323	c.2286C>T	c.(2284-2286)AGC>AGT	p.S762S	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	762	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCCGGGCCAGGCTCAGCCGCT	0.607													12	37					0	0	0.013537	0	0
TMC5	79838	broad.mit.edu	37	16	19451869	19451869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:19451869C>T	uc002dgc.3	+	3	1258	c.509C>T	c.(508-510)TCT>TTT	p.S170F	TMC5_uc010vaq.1_Missense_Mutation_p.S170F|TMC5_uc002dgb.3_Missense_Mutation_p.S170F|TMC5_uc010var.1_Missense_Mutation_p.S170F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	170	Extracellular (Potential).					integral to membrane				skin(1)	1						CAGAGCAACTCTGATCATCCT	0.483													64	148					0	0	0.014410	0	0
ACSM5	54988	broad.mit.edu	37	16	20429464	20429464	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:20429464G>A	uc002dhe.2	+	3	435	c.288G>A	c.(286-288)GGG>GGA	p.G96G	ACSM5_uc002dhd.1_Silent_p.G96G	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	96					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						AGGAGCTGGGGAAGCAGTCCA	0.622													22	34					0	0	0.010504	0	0
ACSM1	116285	broad.mit.edu	37	16	20696709	20696709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:20696709G>A	uc002dhm.1	-	2	277	c.209C>T	c.(208-210)CCA>CTA	p.P70L	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.P70L	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	70					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						AGCTGGATTTGGACCTCTCTT	0.463													59	101					0	0	0.014410	0	0
VWA3A	146177	broad.mit.edu	37	16	22132860	22132860	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:22132860C>T	uc010vbq.1	+	14	1374	c.1278C>T	c.(1276-1278)GTC>GTT	p.V426V	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Silent_p.V413V	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	426						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TATATCAGGTCCTGGCACCCA	0.398													58	118					0	0	0.014410	0	0
USP31	57478	broad.mit.edu	37	16	23117767	23117767	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:23117767G>A	uc002dll.2	-	3	813	c.813C>T	c.(811-813)TTC>TTT	p.F271F		NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	271					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		TACAGACAGGGAAAGATGGTC	0.393													12	17					0	0	0.003163	0	0
AQP8	343	broad.mit.edu	37	16	25232823	25232823	+	Silent	SNP	C	T	T	rs148689630	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:25232823C>T	uc002doc.2	+	3	388	c.306C>T	c.(304-306)ATC>ATT	p.I102I		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	102	Helical; (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		CCATGCTGATCGGAGGCCTCA	0.632													40	79					0	0	0.007835	0	0
GSG1L	146395	broad.mit.edu	37	16	27802769	27802769	+	Silent	SNP	C	T	T	rs139721269		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:27802769C>T	uc002doz.2	-	7	1003	c.918G>A	c.(916-918)GCG>GCA	p.A306A	GSG1L_uc010bya.1_Silent_p.A255A|GSG1L_uc010bxz.1_Silent_p.A169A|GSG1L_uc002doy.2_Silent_p.A151A	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	306						integral to membrane				ovary(1)	1						GCCAGGAATCCGCCATGTGTG	0.647													13	23					0	0	0.002450	0	0
GSG1L	146395	broad.mit.edu	37	16	27974477	27974478	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:27974477_27974478CT>TG	uc002doz.2	-	2	481_482	c.396_397AG>CA	c.(394-399)AAAGGG>AACAGG	p.132_133KG>NR	GSG1L_uc010bya.1_Missense_Mutation_p.132_133KG>NS	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	132_133	Helical; (Potential).					integral to membrane				ovary(1)	1						TCACACTCACCTTTCTCCGATG	0.53													10	21					0	0	0.004672	0	0
ITGAL	3683	broad.mit.edu	37	16	30507602	30507603	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:30507602_30507603CC>TT	uc002dyi.3	+	14	1864_1865	c.1688_1689CC>TT	c.(1687-1689)CCC>CTT	p.P563L	ITGAL_uc002dyj.3_Missense_Mutation_p.P480L|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	563	FG-GAP 6.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GGGCTTAGTCCCCAGCCAAGTC	0.634													27	69					0	0	0.004672	0	0
PRR14	78994	broad.mit.edu	37	16	30666289	30666289	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:30666289C>A	uc002dyy.2	+	8	1256	c.998C>A	c.(997-999)TCC>TAC	p.S333Y	PRR14_uc002dyz.2_Missense_Mutation_p.S178Y|PRR14_uc002dza.2_Missense_Mutation_p.S333Y|PRR14_uc002dzb.1_Missense_Mutation_p.S147Y	NM_024031	NP_076936	Q9BWN1	PRR14_HUMAN	proline rich 14	333	Pro-rich.										0			Colorectal(24;0.103)			CGAAGCTACTCCTGCCCTGAT	0.677													12	50					5.50884e-06	5.61801e-06	0.013537	1	0
SETD1A	9739	broad.mit.edu	37	16	30981001	30981001	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:30981001G>T	uc002ead.1	+	12	3693	c.3007G>T	c.(3007-3009)GTG>TTG	p.V1003L		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1003	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GGAGACAGAGGTGTCGGATGG	0.512													9	24					2.17888e-05	2.21867e-05	0.006214	1	0
ZNF668	79759	broad.mit.edu	37	16	31072632	31072632	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:31072632C>T	uc010caf.2	-	3	1974	c.1617G>A	c.(1615-1617)CCG>CCA	p.P539P	ZNF668_uc002eao.2_Silent_p.P539P	NM_024706	NP_078982	Q96K58	ZN668_HUMAN	zinc finger protein 668	539					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(4)	4						GCCGGAGCTCCGGGTGTGAGC	0.652													26	60					0	0	0.003954	0	0
ZNF646	9726	broad.mit.edu	37	16	31090251	31090251	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:31090251A>G	uc002eap.2	+	2	2895	c.2606A>G	c.(2605-2607)AAC>AGC	p.N869S		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	869	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CACTTCCAGAACCATAGGCCT	0.642													33	55					0	0	0.013726	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163853	32163853	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:32163853G>A	uc002ecx.2	-	1		c.22C>T				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						CCATTCCACTGAGTCAGGGAG	0.597													10	51					0	0	0.002450	0	0
N4BP1	9683	broad.mit.edu	37	16	48595073	48595073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:48595073G>A	uc002efp.2	-	2	1718	c.1481C>T	c.(1480-1482)CCT>CTT	p.P494L		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	494					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				GGCAACAGAAGGTGAAAGGCC	0.428													36	29					0	0	0.003755	0	0
ZNF423	23090	broad.mit.edu	37	16	49670602	49670603	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:49670602_49670603GG>AA	uc002efs.2	-	5	2758_2759	c.2460_2461CC>TT	c.(2458-2463)ATCCTG>ATTTTG	p.820_821IL>IL	ZNF423_uc010vgn.1_Silent_p.703_704IL>IL	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	820_821	C2H2-type 20.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTCTCCAGCAGGATGATGGCGT	0.569													15	12					0	0	0.004672	0	0
ZNF423	23090	broad.mit.edu	37	16	49671655	49671655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:49671655G>A	uc002efs.2	-	5	1706	c.1408C>T	c.(1408-1410)CCT>TCT	p.P470S	ZNF423_uc010vgn.1_Missense_Mutation_p.P353S	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	470					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TGCATCACAGGGTAGGCATGG	0.572													28	25					0	0	0.012213	0	0
CES7	221223	broad.mit.edu	37	16	55890354	55890354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:55890354C>T	uc002eip.2	-	9	1209	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K	CES7_uc002eio.2_Missense_Mutation_p.E354K|CES7_uc002eiq.2_Missense_Mutation_p.E115K|CES7_uc002eir.2_Missense_Mutation_p.E248K	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	354						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		TCAGGAGCCTCCTTCTGTGGA	0.547													40	22					0	0	0.007835	0	0
GPR114	221188	broad.mit.edu	37	16	57597802	57597803	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:57597802_57597803CC>TT	uc002elx.3	+	5	425_426	c.340_341CC>TT	c.(340-342)CCC>TTC	p.P114F	GPR114_uc010vhr.1_Missense_Mutation_p.P114F|GPR114_uc002ely.2_Missense_Mutation_p.P114F	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	114	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						CATGCAGTTCCCCGCCGAGCTG	0.619													28	21					0	0	0.004672	0	0
FHOD1	29109	broad.mit.edu	37	16	67264128	67264128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:67264128C>T	uc002esl.2	-	20	3167	c.3055G>A	c.(3055-3057)GAG>AAG	p.E1019K	FHOD1_uc002esk.2_Missense_Mutation_p.E78K|FHOD1_uc010ced.2_Missense_Mutation_p.E826K	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	1019					actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GAGAACTTCTCTGTCTGGAGA	0.592													32	13					0	0	0.009535	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76482101	76482101	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:76482101T>C	uc002feu.1	+	7	1116	c.731T>C	c.(730-732)CTT>CCT	p.L244P	CNTNAP4_uc002fev.1_Missense_Mutation_p.L156P|CNTNAP4_uc010chb.1_Missense_Mutation_p.L219P|CNTNAP4_uc002fex.1_Missense_Mutation_p.L247P|CNTNAP4_uc002few.2_Missense_Mutation_p.L219P	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	244	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTCTTTTTACTTATTAATTCA	0.353													16	12					0	0	0.004007	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253798	81253798	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:81253798C>A	uc002fgh.1	-	1	178	c.178G>T	c.(178-180)GGA>TGA	p.G60*	PKD1L2_uc002fgj.2_Nonsense_Mutation_p.G60*	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	60	Extracellular (Potential).|C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAATGGCCTCCTTGCCCCTCG	0.547													29	15					2.61193e-14	2.67593e-14	0.009535	1	0
KIAA0182	23199	broad.mit.edu	37	16	85667574	85667575	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:85667574_85667575GG>AA	uc002fix.2	+	2	136_137	c.62_63GG>AA	c.(61-63)AGG>AAA	p.R21K	KIAA0182_uc002fiw.2_Intron|KIAA0182_uc002fiy.2_Intron	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	21							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						ACCGCGACCAGGACCACCGCCA	0.673													16	21					0	0	0.004672	0	0
KLHDC4	54758	broad.mit.edu	37	16	87790057	87790058	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr16:87790057_87790058GG>AA	uc002fki.2	-	3	263_264	c.217_218CC>TT	c.(217-219)CCT>TTT	p.P73F	KLHDC4_uc002fkj.2_Missense_Mutation_p.P73F|KLHDC4_uc002fkk.2_Intron|KLHDC4_uc002fkl.2_Intron|KLHDC4_uc010chu.1_5'UTR	NM_017566	NP_060036	Q8TBB5	KLDC4_HUMAN	kelch domain containing 4	73										pancreas(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0283)		ATCTTTCTCAGGATGAACCGAG	0.446													15	13					0	0	0.004672	0	0
GEMIN4	50628	broad.mit.edu	37	17	649017	649017	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:649017G>A	uc002frs.1	-	2	2385	c.2266C>T	c.(2266-2268)CTG>TTG	p.L756L		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	756					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		AGCCAGGACAGGGACTTGATC	0.537													3	16					0	0	0.009096	0	0
MYO1C	4641	broad.mit.edu	37	17	1374529	1374529	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:1374529T>A	uc002fsp.2	-	20	2343	c.2123A>T	c.(2122-2124)TAC>TTC	p.Y708F	MYO1C_uc002fsn.2_Missense_Mutation_p.Y689F|MYO1C_uc002fso.2_Missense_Mutation_p.Y673F|MYO1C_uc010vqj.1_Missense_Mutation_p.Y673F|MYO1C_uc010vqk.1_Missense_Mutation_p.Y684F	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	708	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		GCCCATCTTGTACTCTTCTGG	0.632													15	36					0	0	0.003163	0	0
SGSM2	9905	broad.mit.edu	37	17	2274703	2274704	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:2274703_2274704CC>TT	uc002fun.3	+	12	1611_1612	c.1436_1437CC>TT	c.(1435-1437)CCC>CTT	p.P479L	SGSM2_uc002fum.3_Missense_Mutation_p.P524L|SGSM2_uc010vqw.1_Missense_Mutation_p.P479L|SGSM2_uc002fuo.2_Missense_Mutation_p.P67L	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	479						intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AGCTGCATCCCCGACCGGTGAG	0.663													28	38					0	0	0.004672	0	0
KIAA0664	23277	broad.mit.edu	37	17	2598354	2598354	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:2598354G>A	uc002fuy.1	-	16	2618	c.2532C>T	c.(2530-2532)TTC>TTT	p.F844F	KIAA0664_uc002fux.1_Silent_p.F777F|KIAA0664_uc010ckc.1_5'UTR	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	844							binding			breast(2)	2						AGCAGTTCAGGAAGTGGCTGA	0.637													3	7					0	0	0.004672	0	0
ZZEF1	23140	broad.mit.edu	37	17	3920857	3920857	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:3920857G>A	uc002fxe.2	-	48	7873	c.7809C>T	c.(7807-7809)GTC>GTT	p.V2603V	ZZEF1_uc002fxg.1_5'UTR	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2603							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGTAGTCCCGGACAGCCCTCT	0.627													26	35					0	0	0.004656	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4455542	4455542	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:4455542G>A	uc002fyb.3	-	7	845	c.783C>T	c.(781-783)GAC>GAT	p.D261D	MYBBP1A_uc002fxz.3_Silent_p.D261D	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	261	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						GCAGCTTGCGGTCCTTCTTCA	0.612													20	39					0	0	0.008871	0	0
ZMYND15	84225	broad.mit.edu	37	17	4644107	4644107	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:4644107C>T	uc002fyt.2	+	2	303	c.264C>T	c.(262-264)CTC>CTT	p.L88L	CXCL16_uc002fyr.3_5'Flank|CXCL16_uc002fys.3_5'Flank|ZMYND15_uc002fyv.2_Silent_p.L88L|ZMYND15_uc002fyu.2_Silent_p.L88L	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	88							zinc ion binding				0						CTGCCTGGCTCCTGGGAGACA	0.512													13	22					0	0	0.001855	0	0
GLTPD2	388323	broad.mit.edu	37	17	4692539	4692539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:4692539G>A	uc002fza.1	+	2	178	c.125G>A	c.(124-126)GGA>GAA	p.G42E	VMO1_uc002fyx.2_5'Flank|VMO1_uc010vsh.1_5'Flank|VMO1_uc010vsi.1_5'Flank|VMO1_uc002fyy.2_5'Flank|uc002fyz.2_3'UTR	NM_001014985	NP_001014985			glycolipid transfer protein domain containing 2												0						TCGGGCTGCGGACCCAGGGCG	0.701													7	11					0	0	0.003080	0	0
NUP88	4927	broad.mit.edu	37	17	5308443	5308443	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:5308443G>A	uc002gbo.1	-	6	1004	c.978C>T	c.(976-978)ATC>ATT	p.I326I	NUP88_uc010vsx.1_Silent_p.I326I|NUP88_uc010cle.1_Silent_p.I325I|NUP88_uc010vsy.1_Silent_p.I326I	NM_002532	NP_002523	Q99567	NUP88_HUMAN	nucleoporin 88kDa	326					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	transporter activity			kidney(1)	1						ATTCAGTAGCGATCACTAAGA	0.483													16	27					0	0	0.004007	0	0
KCTD11	147040	broad.mit.edu	37	17	7256760	7256760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:7256760C>T	uc002gge.3	+	1	1553	c.499C>T	c.(499-501)CCC>TCC	p.P167S	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	167					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CGTGGAACTCCCCGAGGTGGA	0.672													20	32					0	0	0.012319	0	0
FGF11	2256	broad.mit.edu	37	17	7345942	7345943	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:7345942_7345943GG>AA	uc002ggz.2	+	4	689_690	c.438_439GG>AA	c.(436-441)AAGGAG>AAAAAG	p.E147K	FGF11_uc010vtw.1_3'UTR|FGF11_uc010cmi.2_Missense_Mutation_p.E23K|FGF11_uc010vtx.1_Missense_Mutation_p.E88K|FGF11_uc002gha.3_Missense_Mutation_p.E23K|CHRNB1_uc002ghb.2_5'Flank|CHRNB1_uc010vty.1_5'Flank	NM_004112	NP_004103	Q92914	FGF11_HUMAN	fibroblast growth factor 11	147					cell-cell signaling|nervous system development|signal transduction		growth factor activity				0		Prostate(122;0.157)				GTCGCTTTAAGGAGTGTGTCTT	0.54													71	149					0	0	0.004672	0	0
CHD3	1107	broad.mit.edu	37	17	7807809	7807809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:7807809C>T	uc002gje.2	+	25	4094	c.3944C>T	c.(3943-3945)CCT>CTT	p.P1315L	CHD3_uc002gjd.2_Missense_Mutation_p.P1374L|CHD3_uc002gjf.2_Missense_Mutation_p.P1315L|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1315					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				AATGTGGACCCTGACTACTGG	0.507													23	46					0	0	0.014323	0	0
ALOX15B	247	broad.mit.edu	37	17	7951773	7951773	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:7951773C>T	uc002gju.2	+	14	2037	c.1921C>T	c.(1921-1923)CAG>TAG	p.Q641*	ALOX15B_uc002gjv.2_Nonsense_Mutation_p.Q612*|ALOX15B_uc002gjw.2_Nonsense_Mutation_p.Q567*|ALOX15B_uc010vun.1_Nonsense_Mutation_p.Q629*|ALOX15B_uc010cnp.2_Nonsense_Mutation_p.Q447*	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	641	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CGCCACCTTCCAGAGCCGCCT	0.652													26	39					0	0	0.003330	0	0
MYH13	8735	broad.mit.edu	37	17	10243706	10243706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:10243706C>T	uc002gmk.1	-	17	1997	c.1907G>A	c.(1906-1908)GGA>GAA	p.G636E		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	636	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CTTCTTGCTTCCTCCGGAGTC	0.557													20	29					0	0	0.007413	0	0
MYH8	4626	broad.mit.edu	37	17	10304406	10304406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:10304406C>T	uc002gmm.2	-	25	3306	c.3211G>A	c.(3211-3213)GAT>AAT	p.D1071N	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1071	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TTTTCCATATCCATTGTGGAT	0.388									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				38	45					0	0	0.011902	0	0
MYH4	4622	broad.mit.edu	37	17	10351249	10351249	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:10351249C>T	uc002gmn.2	-	34	4962	c.4851G>A	c.(4849-4851)AGG>AGA	p.R1617R	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1617	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCTTCTTGATCCTCAGAGCAT	0.463													64	110					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10356486	10356486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:10356486C>T	uc002gmn.2	-	24	3205	c.3094G>A	c.(3094-3096)GAA>AAA	p.E1032K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1032	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						ACTTGCTGTTCTAGCTTGGTT	0.463													143	196					0	0	0.014410	0	0
DNAH9	1770	broad.mit.edu	37	17	11835379	11835379	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:11835379T>A	uc002gne.2	+	64	12222	c.12154T>A	c.(12154-12156)TTT>ATT	p.F4052I	DNAH9_uc010coo.2_Missense_Mutation_p.F3270I|DNAH9_uc002gnf.2_Missense_Mutation_p.F364I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4052	AAA 6 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GAGCATCCTCTTTGCTCTTTG	0.483													105	215					0	0	0.014410	0	0
ELAC2	60528	broad.mit.edu	37	17	12903527	12903527	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:12903527G>A	uc002gnz.3	-	15	1464	c.1369C>T	c.(1369-1371)CAG>TAG	p.Q457*	ELAC2_uc002gnu.3_5'UTR|ELAC2_uc002gnv.3_Nonsense_Mutation_p.Q85*|ELAC2_uc002gnw.3_Nonsense_Mutation_p.Q115*|ELAC2_uc002gnx.3_Nonsense_Mutation_p.Q217*|ELAC2_uc010vvo.1_Nonsense_Mutation_p.Q255*|ELAC2_uc010vvp.1_Nonsense_Mutation_p.Q438*|ELAC2_uc010vvq.1_Nonsense_Mutation_p.Q456*|ELAC2_uc010vvr.1_Nonsense_Mutation_p.Q417*	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	457					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						ACGCTCTGCTGGAAGTTGGGA	0.582									Hereditary_Prostate_Cancer				15	41					0	0	0.003163	0	0
TRIM16	10626	broad.mit.edu	37	17	15532010	15532010	+	Silent	SNP	C	T	T	rs148415865		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:15532010C>T	uc002gox.2	-	9	2171	c.1614G>A	c.(1612-1614)AAG>AAA	p.K538K	TRIM16_uc002gor.1_Intron|TRIM16_uc002gow.2_Silent_p.K322K|TRIM16_uc002goy.2_Silent_p.K408K	NM_006470	NP_006461	O95361	TRI16_HUMAN	tripartite motif-containing 16	538	B30.2/SPRY.				histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		CGTTTTCCTTCTTGGAAAGCC	0.512													22	33					0	0	0.003954	0	0
CCDC144B	284047	broad.mit.edu	37	17	18483639	18483639	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:18483639C>T	uc002gua.3	-	12		c.2787G>A								Homo sapiens cDNA FLJ36492 fis, clone THYMU2018455.											ovary(1)|skin(1)	2						TTCTGTTTCCCATTCTCCAGT	0.403													7	12					0	0	0.003163	0	0
MFAP4	4239	broad.mit.edu	37	17	19289711	19289711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:19289711G>A	uc002gvt.2	-	3	177	c.152C>T	c.(151-153)TCA>TTA	p.S51L	MFAP4_uc002gvr.2_RNA|MFAP4_uc002gvs.2_Missense_Mutation_p.S75L	NM_002404	NP_002395	P55083	MFAP4_HUMAN	microfibrillar-associated protein 4 precursor	51	Fibrinogen C-terminal.				cell adhesion|signal transduction	microfibril	receptor binding				0	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					CACGCCGTCTGACTGGTAGCC	0.552													10	11					0	0	0.008291	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319931	21319931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:21319931C>T	uc002gyv.1	+	3	1982	c.1277C>T	c.(1276-1278)CCC>CTC	p.P426L		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	426	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GAGCAGCGGCCCTACAGACGG	0.701										Prostate(3;0.18)			5	29					0	0	0.001168	0	0
FAM27L	284123	broad.mit.edu	37	17	21825499	21825499	+	RNA	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:21825499G>T	uc002gyz.2	+	1		c.130G>T				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		gggccgactaggatgacgaaa	0													18	50					0.00741294	0.00751402	0.007413	1	0
NUFIP2	57532	broad.mit.edu	37	17	27613294	27613294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:27613294G>A	uc002hdy.3	-	2	1807	c.1718C>T	c.(1717-1719)CCT>CTT	p.P573L	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	573						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			CAGAACTTGAGGACTAGTCCG	0.478													36	55					0	0	0.004289	0	0
SPACA3	124912	broad.mit.edu	37	17	31322664	31322664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:31322664G>A	uc002hhs.1	+	2	347	c.272G>A	c.(271-273)GGT>GAT	p.G91D	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	91	Extracellular (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			AAGCTCTACGGTCGTTGTGAA	0.622													19	16					0	0	0.007413	0	0
C17orf66	256957	broad.mit.edu	37	17	34192239	34192239	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:34192239C>T	uc002hke.1	-	3	449	c.300G>A	c.(298-300)AGG>AGA	p.R100R	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Silent_p.R100R|C17orf66_uc010wcm.1_Silent_p.R66R	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	100							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CTCTCATTTTCCTCAACATCT	0.507													20	31					0	0	0.003330	0	0
ACACA	31	broad.mit.edu	37	17	35506859	35506859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:35506859G>A	uc002hnm.2	-	45	5688	c.5497C>T	c.(5497-5499)CGG>TGG	p.R1833W	ACACA_uc002hnk.2_Missense_Mutation_p.R1755W|ACACA_uc002hnl.2_Missense_Mutation_p.R1775W|ACACA_uc002hnn.2_Missense_Mutation_p.R1833W|ACACA_uc002hno.2_Missense_Mutation_p.R1870W|ACACA_uc010cuy.2_Missense_Mutation_p.R478W|ACACA_uc010wdc.1_5'UTR	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1833	Carboxyltransferase.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGTCCCAGCCGGACAAGGTAA	0.433													33	44					0	0	0.003755	0	0
PLXDC1	57125	broad.mit.edu	37	17	37262116	37262116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:37262116C>T	uc002hrg.2	-	7	1014	c.802G>A	c.(802-804)GAT>AAT	p.D268N	uc002hrf.1_Intron|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	268	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						CCTGGCACATCCGGGGATGGA	0.602													40	78					0	0	0.009718	0	0
GSDMB	55876	broad.mit.edu	37	17	38061141	38061141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:38061141C>T	uc010cwj.2	-	10	1180	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	GSDMB_uc010cwi.2_Missense_Mutation_p.R139Q|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.R370Q|GSDMB_uc002hth.2_Missense_Mutation_p.R379Q|GSDMB_uc010wem.1_Missense_Mutation_p.R383Q	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	387						cytoplasm				breast(1)|pancreas(1)	2						ACAGAGAATTCGTGCCTCAGG	0.532													26	57					0	0	0.003330	0	0
ORMDL3	94103	broad.mit.edu	37	17	38079467	38079468	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:38079467_38079468GG>AA	uc002htj.1	-	3	363_364	c.223_224CC>TT	c.(223-225)CCG>TTG	p.P75L	ORMDL3_uc002hti.1_RNA|ORMDL3_uc002htk.1_Missense_Mutation_p.P75L	NM_139280	NP_644809	Q8N138	ORML3_HUMAN	ORM1-like 3	75	Lumenal (Potential).				ceramide metabolic process	integral to membrane|SPOTS complex	protein binding				0	Colorectal(19;0.000442)		Lung(15;0.0234)			GCCCTGGTCCGGGGTCTCAAAG	0.564													38	94					0	0	0.004672	0	0
KRT10	3858	broad.mit.edu	37	17	38975091	38975091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:38975091G>A	uc002hvi.2	-	7	1722	c.1696C>T	c.(1696-1698)CAC>TAC	p.H566Y	KRT10_uc010cxd.2_RNA|TMEM99_uc002hvj.1_5'Flank	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	566	Ser-rich.|Gly-rich.|Tail.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				GAGGACTTGTGGCCTCCGCTG	0.294													8	18					0	0	0.008291	0	0
KRT34	3885	broad.mit.edu	37	17	39537454	39537454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:39537454C>T	uc002hwm.2	-	3	580	c.568G>A	c.(568-570)GAG>AAG	p.E190K		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	190	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				AGGGACTGCTCCGTCTGGTAC	0.542													30	51					0	0	0.008361	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40836075	40836075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:40836075G>A	uc002iay.2	+	3	407	c.191G>A	c.(190-192)CGG>CAG	p.R64Q	CCR10_uc002iax.3_5'Flank|CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	64	Extracellular (Potential).|F5/8 type C.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		TGGTCACCACGGATTGGGGAT	0.597													34	65					0	0	0.003755	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40850783	40850783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:40850783C>T	uc002iay.2	+	24	4226	c.4010C>T	c.(4009-4011)TCA>TTA	p.S1337L	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	1337	SH3-binding (Potential).|Cytoplasmic (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		CTACCCACTTCAGGCCCTGCC	0.453													22	37					0	0	0.003330	0	0
AOC2	314	broad.mit.edu	37	17	41002308	41002309	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:41002308_41002309CC>TT	uc002ibu.2	+	4	2249_2250	c.2214_2215CC>TT	c.(2212-2217)CTCCCC>CTTTCC	p.P739S	AOC2_uc002ibt.2_Missense_Mutation_p.P712S|AOC3_uc002ibv.2_5'Flank	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	739					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		TGGCCTGCCTCCCCGACCTGGC	0.584													75	178					0	0	0.004672	0	0
DUSP3	1845	broad.mit.edu	37	17	41852141	41852141	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:41852141G>A	uc002ied.3	-	2	367	c.291C>T	c.(289-291)AAC>AAT	p.N97N	DUSP3_uc002iee.3_Silent_p.N97N|DUSP3_uc002ief.1_Silent_p.N29N	NM_004090	NP_004081	P51452	DUS3_HUMAN	dual specificity phosphatase 3	97					inactivation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of JNK cascade|negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of mitotic cell cycle|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|immunological synapse|nucleoplasm	MAP kinase phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		Breast(137;0.00725)		BRCA - Breast invasive adenocarcinoma(366;0.116)		AAGCGCTGAGGTTGAACTCCT	0.532													42	58					0	0	0.007835	0	0
RUNDC3A	10900	broad.mit.edu	37	17	42390513	42390514	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:42390513_42390514GG>AA	uc002igl.3	+	3	539_540	c.265_266GG>AA	c.(265-267)GGG>AAG	p.G89K	RUNDC3A_uc002igi.2_Missense_Mutation_p.G89K|RUNDC3A_uc002igj.2_Missense_Mutation_p.G84K|RUNDC3A_uc002igk.2_Missense_Mutation_p.G85K	NM_001144825	NP_001138297	Q59EK9	RUN3A_HUMAN	RUN domain containing 3A isoform 1	89	Interaction with RAP2A (By similarity).|RUN.				small GTPase mediated signal transduction		small GTPase regulator activity				0		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		CAGCTCAGACGGGCAGCGGGGC	0.609													21	43					0	0	0.004672	0	0
C1QL1	10882	broad.mit.edu	37	17	43045296	43045296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:43045296C>T	uc002ihv.2	-	1	349	c.121G>A	c.(121-123)GGC>AGC	p.G41S		NM_006688	NP_006679	O75973	C1QRF_HUMAN	complement component 1, q subcomponent-like 1	41					locomotory behavior	collagen					0		Prostate(33;0.155)				gcgccggcgccggggccccgc	0.627													4	9					0	0	0.000602	0	0
HOXB1	3211	broad.mit.edu	37	17	46607721	46607721	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:46607721C>T	uc002ink.1	-	1	552	c.546G>A	c.(544-546)TGG>TGA	p.W182*		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	182	Antp-type hexapeptide.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TAACCTTCATCCAGTCGAAGG	0.592													8	25					0	0	0.006214	0	0
CUEDC1	404093	broad.mit.edu	37	17	55956975	55956975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:55956975G>A	uc002ivd.1	-	3	1180	c.461C>T	c.(460-462)CCC>CTC	p.P154L	CUEDC1_uc002ive.1_Missense_Mutation_p.P154L	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1	154	Pro-rich.									skin(2)	2						TTCTCACCGGGGAGGCGGAGT	0.607													14	47					0	0	0.003163	0	0
MKS1	54903	broad.mit.edu	37	17	56288020	56288020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:56288020G>A	uc002ivr.1	-	11	1099	c.1024C>T	c.(1024-1026)CAC>TAC	p.H342Y	MKS1_uc010wnq.1_Missense_Mutation_p.H139Y|MKS1_uc002ivs.1_Missense_Mutation_p.H342Y	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	342	B9.				cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						TATTACTTACGAGCAGTTGGC	0.313													32	51					0	0	0.012213	0	0
MPO	4353	broad.mit.edu	37	17	56357732	56357732	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:56357732C>T	uc002ivu.1	-	2	420	c.243G>A	c.(241-243)CGG>CGA	p.R81R		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	81					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCCACCTTTCCCGCCGCTCCT	0.647													11	22					0	0	0.013537	0	0
BZRAP1	9256	broad.mit.edu	37	17	56389437	56389437	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:56389437G>A	uc002ivx.3	-	17	3616	c.2745C>T	c.(2743-2745)CTC>CTT	p.L915L	BZRAP1_uc010dcs.2_Silent_p.L855L|BZRAP1_uc010wnt.1_Silent_p.L915L	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	915	Fibronectin type-III 2.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTTCCCCATTGAGGTAGATGG	0.622													21	54					0	0	0.012319	0	0
GDPD1	284161	broad.mit.edu	37	17	57348355	57348355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:57348355C>T	uc002ixk.1	+	8	906	c.769C>T	c.(769-771)CTC>TTC	p.L257F	GDPD1_uc002ixj.2_Missense_Mutation_p.L257F	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	257	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GCTTTCTGATCTGTAAGAATT	0.308													29	83					0	0	0.007291	0	0
RGS9	8787	broad.mit.edu	37	17	63193253	63193253	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:63193253C>T	uc002jfe.2	+	13	980	c.870C>T	c.(868-870)ATC>ATT	p.I290I	RGS9_uc010dem.2_Silent_p.I287I|RGS9_uc002jfd.2_Silent_p.I287I|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Silent_p.I61I	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	290					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GGGTGGAAATCCCAACCAAGA	0.527													4	18					0	0	0.009096	0	0
CCDC46	201134	broad.mit.edu	37	17	63898308	63898308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:63898308C>T	uc002jfl.2	-	20	2344	c.2125G>A	c.(2125-2127)GAA>AAA	p.E709K	CCDC46_uc010deo.2_Missense_Mutation_p.E451K|CCDC46_uc002jfm.2_Missense_Mutation_p.E709K|CCDC46_uc010dep.2_Missense_Mutation_p.E667K	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	709	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			ATTTGATTTTCGTGCTCCATA	0.388													15	50					0	0	0.004007	0	0
SOX9	6662	broad.mit.edu	37	17	70119026	70119026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:70119026C>T	uc002jiw.2	+	2	970	c.598C>T	c.(598-600)CCC>TCC	p.P200S	uc002jiv.2_5'Flank	NM_000346	NP_000337	P48436	SOX9_HUMAN	transcription factor SOX9	200					cAMP-mediated signaling|negative regulation of transcription, DNA-dependent|positive regulation of branching involved in ureteric bud morphogenesis|protein complex assembly|renal vesicle induction	nucleus|protein complex	core promoter sequence-specific DNA binding|enhancer binding|protein kinase A catalytic subunit binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription				0		Colorectal(1115;0.245)	STAD - Stomach adenocarcinoma(260;0.119)			GCACATCTCCCCCAACGCCAT	0.672													23	82					0	0	0.004656	0	0
KIF19	124602	broad.mit.edu	37	17	72351339	72351340	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:72351339_72351340CC>TT	uc002jkm.3	+	20	3023_3024	c.2885_2886CC>TT	c.(2884-2886)CCC>CTT	p.P962L		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	962					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GACTCCTCACCCCTGGCTGTTC	0.649													23	45					0	0	0.004672	0	0
LLGL2	3993	broad.mit.edu	37	17	73566141	73566142	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:73566141_73566142GG>AA	uc002joh.2	+	15	1833_1834	c.1679_1680GG>AA	c.(1678-1680)GGG>GAA	p.G560E	LLGL2_uc002joi.2_Missense_Mutation_p.G560E|LLGL2_uc010dgg.1_Missense_Mutation_p.G560E|LLGL2_uc002joj.2_Missense_Mutation_p.G549E|LLGL2_uc010wsd.1_Missense_Mutation_p.G187E	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	560	WD 9.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CGCTGGAAGGGGCACGAGCGCC	0.663													9	12					0	0	0.004672	0	0
EVPL	2125	broad.mit.edu	37	17	74005391	74005391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:74005391C>T	uc002jqi.2	-	22	4123	c.3895G>A	c.(3895-3897)GAC>AAC	p.D1299N	EVPL_uc010wss.1_Missense_Mutation_p.D1321N|EVPL_uc010wst.1_Missense_Mutation_p.D769N	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1299	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CTCCACTCGTCGCGCTCACCC	0.662													64	128					0	0	0.014410	0	0
SPHK1	8877	broad.mit.edu	37	17	74383547	74383547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:74383547G>A	uc002jrf.1	+	8	1844	c.1035G>A	c.(1033-1035)ATG>ATA	p.M345I	SPHK1_uc002jrg.1_Missense_Mutation_p.M294I|SPHK1_uc002jrh.2_Missense_Mutation_p.M359I|SPHK1_uc002jrj.2_Missense_Mutation_p.M431I|SPHK1_uc002jri.2_Missense_Mutation_p.M345I|SPHK1_uc002jrk.3_Missense_Mutation_p.M345I|uc010wtd.1_RNA	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	345					'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						GGGAATTGATGGTTAGCGAGG	0.597													13	32					0	0	0.002450	0	0
GAA	2548	broad.mit.edu	37	17	78091451	78091451	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:78091451A>C	uc002jxo.2	+	18	2566	c.2384A>C	c.(2383-2385)GAG>GCG	p.E795A	GAA_uc002jxp.2_Missense_Mutation_p.E795A|GAA_uc002jxq.2_Missense_Mutation_p.E795A	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	795					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	GCTCCCCGTGAGCCAGCCATC	0.677													18	29					0	0	0.010504	0	0
SLC25A10	1468	broad.mit.edu	37	17	79671403	79671404	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr17:79671403_79671404CC>TT	uc010wut.1	+	2	329_330	c.204_205CC>TT	c.(202-207)GTCCAG>GTTTAG	p.Q69*	MRPL12_uc002kbh.1_Nonsense_Mutation_p.Q69*	NM_012140	NP_036272	Q9UBX3	DIC_HUMAN	solute carrier family 25 (mitochondrial carrier;	Error:Variant_position_missing_in_Q9UBX3_after_alignment					gluconeogenesis|mitochondrial transport	integral to membrane|mitochondrial inner membrane|nucleus	protein binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0117)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)		Succinic acid(DB00139)	AGCAGCTGGTCCAGGACATCGC	0.594													11	21					0	0	0.004672	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891995	2891995	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:2891995C>T	uc002kln.2	+	4	2029	c.1870C>T	c.(1870-1872)CAT>TAT	p.H624Y		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	624	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TGATGTGACTCATCTTCAAAA	0.423													18	52					0	0	0.007413	0	0
LPIN2	9663	broad.mit.edu	37	18	2923774	2923774	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:2923774C>A	uc002klo.2	-	16	2412	c.2173G>T	c.(2173-2175)GAG>TAG	p.E725*		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	725	C-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		GGTACCTACTCATTGATGGAA	0.488													43	74					6.5261e-18	6.71687e-18	0.008740	1	0
DLGAP1	9229	broad.mit.edu	37	18	3879381	3879381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:3879381G>A	uc002kmf.2	-	1	755	c.688C>T	c.(688-690)CGC>TGC	p.R230C	DLGAP1_uc010wyz.1_Missense_Mutation_p.R230C|DLGAP1_uc002kmk.2_Missense_Mutation_p.R230C|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	230					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GAGGCCGAGCGGTCGGGGCAC	0.652													45	82					0	0	0.013114	0	0
TUBB6	84617	broad.mit.edu	37	18	12325306	12325306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:12325306C>T	uc002kqw.2	+	4	563	c.518C>T	c.(517-519)CCC>CTC	p.P173L	TUBB6_uc002kqv.2_Missense_Mutation_p.P101L|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.P136L|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	173					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		ATGCCCTCGCCCAAGGTGTCG	0.622													52	94					0	0	0.014410	0	0
HRH4	59340	broad.mit.edu	37	18	22057039	22057039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:22057039G>A	uc002kvi.2	+	3	786	c.686G>A	c.(685-687)AGA>AAA	p.R229K	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Missense_Mutation_p.R141K	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	229	Cytoplasmic (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	CACTCATTCAGAGGTAGACTA	0.453													44	100					0	0	0.010771	0	0
CDH2	1000	broad.mit.edu	37	18	25570188	25570188	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:25570188C>A	uc002kwg.2	-	10	1930	c.1471G>T	c.(1471-1473)GTA>TTA	p.V491L	CDH2_uc010xbn.1_Missense_Mutation_p.V460L	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	491	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TTTTCATTTACGTCAATAACT	0.468													35	67					1.66425e-11	1.70112e-11	0.004878	1	0
DSG3	1830	broad.mit.edu	37	18	29049253	29049253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:29049253C>T	uc002kws.2	+	12	1947	c.1838C>T	c.(1837-1839)TCA>TTA	p.S613L		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	613	Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGCCGCACTCAGGGAGGCTG	0.592													25	52					0	0	0.003330	0	0
DSG2	1829	broad.mit.edu	37	18	29126575	29126575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:29126575G>A	uc002kwu.3	+	15	3414	c.3226G>A	c.(3226-3228)GTG>ATG	p.V1076M	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	1076	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			GAACACCACGGTGTCTGGAGC	0.473													44	82					0	0	0.011902	0	0
KIAA1012	22878	broad.mit.edu	37	18	29480920	29480920	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:29480920A>G	uc002kxc.3	-	10	1822	c.1458T>C	c.(1456-1458)GAT>GAC	p.D486D	KIAA1012_uc002kxb.3_Silent_p.D432D|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Silent_p.D486D	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	486					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						GAATTGCTGTATCCATGTAAT	0.338													27	52					0	0	0.008361	0	0
FAM59A	64762	broad.mit.edu	37	18	29848384	29848384	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:29848384C>G	uc002kxl.2	-	6	2137	c.2081G>C	c.(2080-2082)GGT>GCT	p.G694A	FAM59A_uc002kxk.1_Missense_Mutation_p.G693A	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	694										ovary(1)|skin(1)	2						CTTGGGACAACCAGAGACGCT	0.542													27	68					0	0	0.006320	0	0
KLHL14	57565	broad.mit.edu	37	18	30349751	30349751	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:30349751G>A	uc002kxm.1	-	2	1192	c.804C>T	c.(802-804)CTC>CTT	p.L268L		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	268	BACK.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GGGCCGGGATGAGGGCGAAGC	0.647													31	44					0	0	0.003271	0	0
ASXL3	80816	broad.mit.edu	37	18	31319124	31319124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:31319124G>A	uc010dmg.1	+	11	1811	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K	ASXL3_uc002kxq.2_Missense_Mutation_p.E293K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	586					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GTTTCCAAATGAAGGAATTGC	0.438													13	21					0	0	0.013537	0	0
ASXL3	80816	broad.mit.edu	37	18	31319226	31319227	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:31319226_31319227GG>AA	uc010dmg.1	+	11	1913_1914	c.1858_1859GG>AA	c.(1858-1860)GGA>AAA	p.G620K	ASXL3_uc002kxq.2_Missense_Mutation_p.G327K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	620	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GAGCCCAGAGGGAGCCTGTACC	0.48													8	18					0	0	0.004672	0	0
SETBP1	26040	broad.mit.edu	37	18	42530992	42530992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:42530992C>T	uc010dni.2	+	4	1983	c.1687C>T	c.(1687-1689)CCC>TCC	p.P563S		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	563						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		GTCTGCATATCCCATCACCCC	0.522									Schinzel-Giedion_syndrome				58	147					0	0	0.014410	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555050	44555050	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:44555050C>T	uc010xdb.1	-	1	1400	c.1164G>A	c.(1162-1164)GAG>GAA	p.E388E	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	388	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						ATTCATCTGTCTCTCGAGCGA	0.567													28	556					0	0	0.004878	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561224	44561224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:44561224C>T	uc002lcr.1	-	1	765	c.412G>A	c.(412-414)GGG>AGG	p.G138R	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	138					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTCTGTTGCCCCGGAGGTGTT	0.642													44	83					0	0	0.013114	0	0
LIPG	9388	broad.mit.edu	37	18	47101801	47101801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:47101801G>A	uc002ldv.2	+	5	886	c.634G>A	c.(634-636)GAT>AAT	p.D212N	LIPG_uc002ldu.1_Missense_Mutation_p.D212N|LIPG_uc010xdh.1_Intron	NM_006033	NP_006024	Q9Y5X9	LIPE_HUMAN	endothelial lipase precursor	212					cholesterol homeostasis|high-density lipoprotein particle remodeling|phospholipid catabolic process|phospholipid homeostasis|positive regulation of cholesterol transport|positive regulation of high-density lipoprotein particle clearance|reverse cholesterol transport	extracellular space	heparin binding|lipoprotein lipase activity|phospholipase A1 activity|protein binding|triglyceride lipase activity			ovary(1)|skin(1)	2						CTCTCCGGACGATGCAGATTT	0.557													25	49					0	0	0.003954	0	0
CCDC11	220136	broad.mit.edu	37	18	47777163	47777163	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:47777163A>G	uc002lee.2	-	5	1052	c.961T>C	c.(961-963)TTA>CTA	p.L321L		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	321	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TCTTCCTGTAAGTCTTGAAGG	0.423													99	190					0	0	0.014410	0	0
ATP8B1	5205	broad.mit.edu	37	18	55334335	55334335	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:55334335C>T	uc002lgw.2	-	19	2274	c.2274G>A	c.(2272-2274)GGG>GGA	p.G758G	uc002lgu.1_Intron|uc002lgv.1_Intron	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	758	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				TAATATCCTCCCCATAGCAGA	0.353									Byler_disease				18	32					0	0	0.012319	0	0
KIAA1468	57614	broad.mit.edu	37	18	59911996	59911996	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:59911996G>A	uc002lil.2	+	11	1836	c.1621_splice	c.e11-1	p.E541_splice	KIAA1468_uc002lik.1_Splice_Site_p.E541_splice|KIAA1468_uc010xel.1_Splice_Site_p.E541_splice|KIAA1468_uc002lim.2_Splice_Site_p.E185_splice	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614								binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				TATTTCTTTAGGAGTTGATCC	0.358													21	40					0	0	0.002780	0	0
HMSD	284293	broad.mit.edu	37	18	61627535	61627535	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:61627535C>T	uc010dqj.2	+	4	515	c.366C>T	c.(364-366)TTC>TTT	p.F122F	SERPINB8_uc002ljs.1_Intron	NM_001123366	NP_001116838	A8MTL9	HMSD_HUMAN	histocompatibility (minor) serpin domain	122						extracellular region	serine-type endopeptidase inhibitor activity				0						TATTCTATTTCGATAATATTT	0.299													4	16					0	0	0.009096	0	0
NETO1	81832	broad.mit.edu	37	18	70451104	70451104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:70451104G>A	uc002lkw.2	-	7	961	c.677C>T	c.(676-678)TCA>TTA	p.S226L	NETO1_uc002lkx.1_Missense_Mutation_p.S225L|NETO1_uc002lky.1_Missense_Mutation_p.S226L	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	226	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GCACTCATTTGAATTCTGCAT	0.348													54	98					0	0	0.014410	0	0
PARD6G	84552	broad.mit.edu	37	18	77918291	77918292	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr18:77918291_77918292CC>TT	uc002lny.2	-	3	659_660	c.493_494GG>AA	c.(493-495)GGC>AAC	p.G165N	LOC100130522_uc002lnx.2_Intron|LOC100130522_uc010xfn.1_Intron|LOC100130522_uc010xfo.1_Intron	NM_032510	NP_115899	Q9BYG4	PAR6G_HUMAN	PAR-6 gamma protein	165	PDZ.|Interaction with PARD3 and CDC42 (By similarity).				cell cycle|cell division|tight junction assembly	cytosol|tight junction	protein binding				0		all_cancers(4;5.63e-22)|all_epithelial(4;5.86e-15)|all_lung(4;1.32e-05)|Ovarian(4;1.33e-05)|Lung NSC(4;2.77e-05)|Esophageal squamous(42;0.0157)|all_hematologic(56;0.13)|Melanoma(33;0.144)		Epithelial(2;1.48e-13)|all cancers(1;5.77e-13)|OV - Ovarian serous cystadenocarcinoma(15;2.74e-10)|BRCA - Breast invasive adenocarcinoma(31;0.00166)|STAD - Stomach adenocarcinoma(84;0.18)|Lung(128;0.23)		CTTCTCGCAGCCGTGCCGGTGC	0.688													7	10					0	0	0.004672	0	0
LPPR3	79948	broad.mit.edu	37	19	815758	815758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:815758G>A	uc002lpx.1	-	3	233	c.169C>T	c.(169-171)CGC>TGC	p.R57C	LPPR3_uc010dru.1_5'Flank|LPPR3_uc002lpw.1_Missense_Mutation_p.R57C|LPPR3_uc002lpy.1_5'UTR	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	57						integral to membrane	phosphatidate phosphatase activity				0						GAGAGAGTGCGGTCATAGCAC	0.617													12	15					0	0	0.013537	0	0
TCF3	6929	broad.mit.edu	37	19	1615702	1615702	+	Silent	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:1615702G>T	uc002ltr.2	-	17	1636	c.1569C>A	c.(1567-1569)GCC>GCA	p.A523A	TCF3_uc002ltn.2_5'UTR|TCF3_uc002lto.2_Silent_p.A284A|TCF3_uc002ltt.3_Silent_p.A523A|TCF3_uc002ltq.2_Silent_p.A472A|TCF3_uc002lts.1_Silent_p.A439A	NM_003200	NP_003191	P15923	TFE2_HUMAN	transcription factor 3 isoform E12	523					B cell lineage commitment|B cell lineage commitment|G1 phase of mitotic cell cycle|immunoglobulin V(D)J recombination|muscle cell differentiation|positive regulation of B cell proliferation|positive regulation of cell cycle|positive regulation of muscle cell differentiation|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus|protein complex|transcription factor complex	bHLH transcription factor binding|DNA binding|E-box binding|identical protein binding|mitogen-activated protein kinase kinase kinase binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|vitamin D response element binding			lung(2)|breast(2)|ovary(1)|large_intestine(1)|skin(1)	7		Acute lymphoblastic leukemia(61;5.94e-12)|all_hematologic(61;1.27e-07)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCCGGGGGGCCTTCAGCT	0.682			T	PBX1|HLF|TFPT	pre B-ALL								32	49					4.65686e-17	4.78562e-17	0.003755	1	0
LMNB2	84823	broad.mit.edu	37	19	2434473	2434473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:2434473G>A	uc002lvy.2	-	7	1049	c.962C>T	c.(961-963)GCC>GTC	p.A321V	LMNB2_uc002lwa.1_Missense_Mutation_p.A341V	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	321	Rod.|Coil 2.					nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCGGCCATGGCCTCCTCCAG	0.662													31	43					0	0	0.013726	0	0
DIRAS1	148252	broad.mit.edu	37	19	2717325	2717325	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:2717325G>A	uc002lwf.3	-	2	638	c.480C>T	c.(478-480)CTC>CTT	p.L160L		NM_145173	NP_660156	O95057	DIRA1_HUMAN	DIRAS family, GTP-binding RAS-like 1	160					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCTCCTGGAAGAGCTCCTTGA	0.632													33	68					0	0	0.005524	0	0
GIPC3	126326	broad.mit.edu	37	19	3590080	3590080	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:3590080G>A	uc002lyd.3	+	6	858	c.831G>A	c.(829-831)CAG>CAA	p.Q277Q		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	277										breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGCGCCCAGGAGTTTGCAC	0.652													6	8					0	0	0.003080	0	0
VMAC	400673	broad.mit.edu	37	19	5908851	5908851	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:5908851C>T	uc002mds.3	+	2	258	c.208C>T	c.(208-210)CAG>TAG	p.Q70*		NM_001017921	NP_001017921	Q2NL98	VMAC_HUMAN	vimentin-type IF-associated coiled-coil protein	70	Potential.					cytoplasm					0						TGCCACACTCCAGGAGCAGCT	0.473													21	40					0	0	0.002780	0	0
TUBB4	10382	broad.mit.edu	37	19	6495192	6495192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:6495192C>T	uc002mfg.1	-	4	1425	c.1318G>A	c.(1318-1320)GAG>AAG	p.E440K	TUBB4_uc002mff.1_Missense_Mutation_p.E368K|MIR220B_hsa-mir-220b|MI0005529_5'Flank	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	440					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		ACCTCCTCCTCCGCCTCCTCC	0.627													26	59					0	0	0.003954	0	0
PNPLA6	10908	broad.mit.edu	37	19	7600813	7600813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:7600813C>T	uc010xjq.1	+	3	361	c.166C>T	c.(166-168)CCT>TCT	p.P56S	PNPLA6_uc002mgq.1_Intron|PNPLA6_uc010xjp.1_Intron|PNPLA6_uc002mgr.1_Intron|PNPLA6_uc002mgs.2_Missense_Mutation_p.P47S	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	47	Lumenal (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						GCCGTTCGTCCCTCAGGTGCT	0.697													3	5					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9054252	9054252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:9054252G>A	uc002mkp.2	-	4	31574	c.31370C>T	c.(31369-31371)TCG>TTG	p.S10457L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10459	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACTGGCAGGCGAAGTGGATGT	0.448													4	11					0	0	0.009096	0	0
MUC16	94025	broad.mit.edu	37	19	9056299	9056299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:9056299C>T	uc002mkp.2	-	3	31351	c.31147G>A	c.(31147-31149)GAC>AAC	p.D10383N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10385	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTGAAGTGTCCAAAGTACTG	0.478													45	96					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453													38	73					0	0	0.004289	0	0
RDH8	50700	broad.mit.edu	37	19	10131441	10131441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:10131441G>A	uc002mmr.2	+	4	748	c.499G>A	c.(499-501)GAA>AAA	p.E167K		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	167					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	GGGATTCTTCGAAAGCCTCGC	0.582													14	19					0	0	0.004007	0	0
ILF3	3609	broad.mit.edu	37	19	10799882	10799883	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:10799882_10799883CC>TT	uc002mpn.2	+	20	2896_2897	c.2579_2580CC>TT	c.(2578-2580)TCC>TTT	p.S860F	ILF3_uc002mpo.2_Missense_Mutation_p.S864F|ILF3_uc002mpq.2_Missense_Mutation_p.P163F	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	860	Interaction with PRMT1.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			AACTACAACTCCCCGGGGTCCG	0.604													77	158					0	0	0.004672	0	0
CARM1	10498	broad.mit.edu	37	19	11018818	11018818	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:11018818C>T	uc002mpz.2	+	3	576	c.450C>T	c.(448-450)TTC>TTT	p.F150F	CARM1_uc010dxn.2_RNA	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	150					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						TGCAGTACTTCCAGGTGGGTT	0.612													31	39					0	0	0.008361	0	0
DOCK6	57572	broad.mit.edu	37	19	11346378	11346378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:11346378C>T	uc002mqs.3	-	21	2491	c.2450G>A	c.(2449-2451)CGG>CAG	p.R817Q	DOCK6_uc010xlq.1_Missense_Mutation_p.R121Q|LOC55908_uc010dxw.2_5'Flank|LOC55908_uc010dxx.2_5'Flank	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	817					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CTCCAGGCTCCGGTGAACAAG	0.612													3	13					0	0	0.004672	0	0
ZNF439	90594	broad.mit.edu	37	19	11978880	11978880	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:11978880G>A	uc002mss.2	+	3	1124	c.996G>A	c.(994-996)GGG>GGA	p.G332G	ZNF439_uc002msr.2_Silent_p.G196G	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	332	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGCAGTGTGGGAAAGCATTAT	0.383													56	90					0	0	0.014410	0	0
HOOK2	29911	broad.mit.edu	37	19	12874530	12874530	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:12874530G>A	uc002muy.2	-	21	2061	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S	HOOK2_uc010xmq.1_Silent_p.S35S|HOOK2_uc002muz.2_Silent_p.S628S	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	630	Sufficient for interaction with CEP110.|Required for localization to the centrosome and induction of aggresome formation.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						GTGTCCTCAGGGAATGGAGTT	0.602													28	49					0	0	0.007291	0	0
CACNA1A	773	broad.mit.edu	37	19	13476136	13476136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:13476136C>T	uc010dze.2	-	5	1015	c.779G>A	c.(778-780)GGG>GAG	p.G260E	CACNA1A_uc002mwy.3_Missense_Mutation_p.G260E	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	260	I.|Extracellular (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CCTACCTGTCCCCTCTTCAAA	0.458													58	66					0	0	0.014410	0	0
CCDC130	81576	broad.mit.edu	37	19	13873689	13873690	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:13873689_13873690CC>TT	uc002mxb.1	+	11	1501_1502	c.998_999CC>TT	c.(997-999)CCC>CTT	p.P333L	CCDC130_uc002mxc.1_Missense_Mutation_p.P333L|CCDC130_uc002mxd.1_Missense_Mutation_p.P188L|CCDC130_uc010dzf.1_Missense_Mutation_p.P227L|MRI1_uc002mxe.2_5'Flank|MRI1_uc002mxf.2_5'Flank	NM_030818	NP_110445	P13994	CC130_HUMAN	coiled-coil domain containing 130	333					response to virus		protein binding				0			OV - Ovarian serous cystadenocarcinoma(19;6.02e-23)|Epithelial(5;2.58e-18)			CCCATGTCCCCCGGAGACTGTC	0.693													7	16					0	0	0.004672	0	0
PTGER1	5731	broad.mit.edu	37	19	14583574	14583574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:14583574G>A	uc002mys.2	-	3	1125	c.1007C>T	c.(1006-1008)GCC>GTC	p.A336V		NM_000955	NP_000946	P34995	PE2R1_HUMAN	prostaglandin E receptor 1, subtype EP1	336	Helical; Name=7; (Potential).					integral to plasma membrane	prostaglandin E receptor activity				0					Alprostadil(DB00770)|Bimatoprost(DB00905)|Bupivacaine(DB00297)|Carboprost Tromethamine(DB00429)	AAGGCGCACGGCCAGGAACAG	0.677													3	5					0	0	0.004672	0	0
OR10H5	284433	broad.mit.edu	37	19	15905657	15905657	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:15905657C>A	uc010xos.1	+	1	799	c.799C>A	c.(799-801)CAG>AAG	p.Q267K		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAAAGGTCCCCAGTCTCCGGA	0.567													33	43					1.06801e-11	1.09251e-11	0.009535	1	0
OR10H1	26539	broad.mit.edu	37	19	15918348	15918348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:15918348G>A	uc002nbq.2	-	1	589	c.500C>T	c.(499-501)GCC>GTC	p.A167V		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCACAGAAGGCGAGGTGGAA	0.617													38	50					0	0	0.011902	0	0
CYP4F11	57834	broad.mit.edu	37	19	16024617	16024617	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:16024617C>T	uc002nbu.2	-	13	1536	c.1500G>A	c.(1498-1500)AGG>AGA	p.R500R	CYP4F11_uc010eab.1_3'UTR|CYP4F11_uc002nbt.2_Silent_p.R500R	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	500					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCTCGGGTTTCCTGCGGGGTT	0.637													15	24					0	0	0.002450	0	0
USHBP1	83878	broad.mit.edu	37	19	17361198	17361198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:17361198C>T	uc002nfs.1	-	13	2061	c.1948G>A	c.(1948-1950)GCC>ACC	p.A650T	USHBP1_uc002nfr.1_Missense_Mutation_p.A276T|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.A586T	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	650	Potential.						PDZ domain binding			ovary(1)	1						TTCCGGTGGGCTCCTCGGAAG	0.667													26	44					0	0	0.010818	0	0
ANKLE1	126549	broad.mit.edu	37	19	17396327	17396327	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:17396327C>T	uc002nga.2	+	7	1740	c.1464C>T	c.(1462-1464)GGC>GGT	p.G488G	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Silent_p.G484G|ANKLE1_uc010xpn.1_Silent_p.G516G|ANKLE1_uc002nfy.2_Silent_p.G451G|ANKLE1_uc002nfz.2_Silent_p.G194G	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	488						nuclear envelope					0						TCTACGTGGGCAAAGGGACGA	0.612													54	104					0	0	0.014410	0	0
SLC27A1	376497	broad.mit.edu	37	19	17611209	17611209	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:17611209G>A	uc002ngu.1	+	8	1379	c.1329G>A	c.(1327-1329)CAG>CAA	p.Q443Q	SLC27A1_uc010xpp.1_Silent_p.Q264Q|SLC27A1_uc002ngv.1_Silent_p.Q45Q	NM_198580	NP_940982	Q6PCB7	S27A1_HUMAN	solute carrier family 27, member 1	443	Sufficient for oligomerization (By similarity).|Cytoplasmic (Potential).				cardiolipin biosynthetic process|fatty acid metabolic process|long-chain fatty acid transport|negative regulation of phospholipid biosynthetic process|phosphatidic acid biosynthetic process|phosphatidylcholine biosynthetic process|phosphatidylethanolamine biosynthetic process|phosphatidylinositol biosynthetic process|phosphatidylserine biosynthetic process|transmembrane transport	endomembrane system|integral to membrane	fatty acid transporter activity|nucleotide binding				0						TCCCCTGCCAGGCCGGTGAGC	0.692													15	34					0	0	0.003330	0	0
KCNN1	3780	broad.mit.edu	37	19	18108989	18108989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:18108989C>T	uc002nht.2	+	11	1716	c.1406C>T	c.(1405-1407)TCG>TTG	p.S469L	ARRDC2_uc002nhu.2_5'Flank	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	469					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GACCTTGTATCGGAGCTGCAC	0.647													4	5					0	0	0.009096	0	0
FKBP8	23770	broad.mit.edu	37	19	18649229	18649229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:18649229G>A	uc002njk.1	-	5	679	c.566C>T	c.(565-567)CCC>CTC	p.P189L	FKBP8_uc002nji.1_Missense_Mutation_p.P27L|FKBP8_uc010xqi.1_Missense_Mutation_p.P218L|FKBP8_uc002njj.1_Missense_Mutation_p.P190L|FKBP8_uc002njl.1_Missense_Mutation_p.P190L|FKBP8_uc002njm.1_Missense_Mutation_p.P189L|FKBP8_uc010ebr.1_Missense_Mutation_p.P28L|FKBP8_uc002njn.2_RNA	NM_012181	NP_036313	Q14318	FKBP8_HUMAN	FK506-binding protein 8	189	PPIase FKBP-type.				apoptosis|interspecies interaction between organisms|intracellular signal transduction|protein folding	integral to endoplasmic reticulum membrane|mitochondrial membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding			ovary(1)	1						CGCGTGCGGGGGGATGTATGG	0.672													14	12					0	0	0.003163	0	0
LOC284441	284441	broad.mit.edu	37	19	20369869	20369869	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:20369869T>C	uc002nov.2	+	1	1413	c.662T>C	c.(661-663)GTT>GCT	p.V221A		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GTTGAAGGAGTTGGTGTTGCT	0.413													24	39					0	0	0.002780	0	0
ZNF43	7594	broad.mit.edu	37	19	21991700	21991700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:21991700C>T	uc002nqj.2	-	4	1269	c.1139G>A	c.(1138-1140)AGC>AAC	p.S380N	ZNF43_uc010ecv.2_Missense_Mutation_p.S374N|ZNF43_uc002nql.2_Missense_Mutation_p.S374N|ZNF43_uc002nqm.2_Missense_Mutation_p.S374N|ZNF43_uc002nqk.2_Missense_Mutation_p.S310N	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	380	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TGAGGACCGGCTAAAAGCTTC	0.368													22	50					0	0	0.012319	0	0
ZNF208	7757	broad.mit.edu	37	19	22154181	22154181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:22154181G>A	uc002nqp.2	-	6	3420	c.3271C>T	c.(3271-3273)CAT>TAT	p.H1091Y	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCTCCAGTATGAATTTTCTTG	0.378													27	24					0	0	0.005443	0	0
ZNF536	9745	broad.mit.edu	37	19	30935918	30935918	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:30935918G>A	uc002nsu.1	+	2	1587	c.1449G>A	c.(1447-1449)GGG>GGA	p.G483G	ZNF536_uc010edd.1_Silent_p.G483G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	483					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TCCCGGAGGGGGACAAGCACT	0.657													21	47					0	0	0.010504	0	0
ZNF536	9745	broad.mit.edu	37	19	30936114	30936114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:30936114G>A	uc002nsu.1	+	2	1783	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	ZNF536_uc010edd.1_Missense_Mutation_p.E549K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	549					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCGCAACCACGAAGACACTTT	0.552													47	76					0	0	0.014410	0	0
CEBPG	1054	broad.mit.edu	37	19	33870288	33870288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:33870288C>T	uc002nup.2	+	2	432	c.143C>T	c.(142-144)CCC>CTC	p.P48L		NM_001806	NP_001797	P53567	CEBPG_HUMAN	CCAAT/enhancer binding protein gamma	48					B cell differentiation|enucleate erythrocyte differentiation|liver development|natural killer cell mediated cytotoxicity|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of DNA binding|positive regulation of DNA repair|positive regulation of interferon-gamma biosynthetic process|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	nucleus	protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0	Esophageal squamous(110;0.137)					GCTGTGGCTCCCAGCAAGCAG	0.562													10	30					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	19	34583601	34583601	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:34583601C>T	uc002nuz.2	-	1	613	c.561G>A	c.(559-561)ACG>ACA	p.T187T						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		TCACGTGAATCGTGTCAAAAG	0.458													3	6					0	0	0.004672	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349665	36349665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:36349665C>T	uc002ocb.3	+	4	633	c.421C>T	c.(421-423)CCT>TCT	p.P141S	KIRREL2_uc002obz.3_Missense_Mutation_p.P141S|KIRREL2_uc002oca.3_Missense_Mutation_p.P91S|KIRREL2_uc002occ.3_Missense_Mutation_p.P88S|KIRREL2_uc002ocd.3_Missense_Mutation_p.P138S	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	141	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCTGGAGTTCCTGCGAACCT	0.612													40	51					0	0	0.007835	0	0
ZFP14	57677	broad.mit.edu	37	19	36831391	36831391	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:36831391T>C	uc002odx.1	-	4	1430	c.1337A>G	c.(1336-1338)CAC>CGC	p.H446R	ZFP14_uc010xtd.1_Missense_Mutation_p.H447R|ZFP14_uc010eex.1_Missense_Mutation_p.H446R	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	446	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					CTCACCAGTGTGAATACTTTG	0.413													41	73					0	0	0.007835	0	0
RYR1	6261	broad.mit.edu	37	19	39051805	39051805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:39051805C>T	uc002oit.2	+	90	12465	c.12335C>T	c.(12334-12336)TCG>TTG	p.S4112L	RYR1_uc002oiu.2_Missense_Mutation_p.S4107L|RYR1_uc002oiv.1_Missense_Mutation_p.S1021L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4112					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TTCCTGCTTTCGTGCTCCGAA	0.597													19	35					0	0	0.008871	0	0
FCGBP	8857	broad.mit.edu	37	19	40433797	40433797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:40433797C>T	uc002omp.3	-	2	480	c.472G>A	c.(472-474)GAG>AAG	p.E158K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	158	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACGGCAAACTCCTTGACATTC	0.612													28	49					0	0	0.006320	0	0
PRX	57716	broad.mit.edu	37	19	40900066	40900066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:40900066G>A	uc002onr.2	-	7	4462	c.4193C>T	c.(4192-4194)GCC>GTC	p.A1398V	PRX_uc002onq.2_Missense_Mutation_p.A1259V|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1398					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGACTTGGGGGCTGCATCGCC	0.697													37	60					0	0	0.008740	0	0
CYP2A6	1548	broad.mit.edu	37	19	41351204	41351204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:41351204G>A	uc002opl.3	-	7	1177	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	CYP2A6_uc010ehe.1_Missense_Mutation_p.P182S	NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	386					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	AGCACCTTAGGGAGGAAGAAA	0.557													35	66					0	0	0.006230	0	0
PSG7	5676	broad.mit.edu	37	19	43430025	43430025	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:43430025G>A	uc002ovl.3	-	6	1245	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Silent_p.I294I|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Silent_p.I107I|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.I294I|PSG7_uc010xwl.1_Silent_p.I259I	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	381	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TAATCTGGGGGATAGAAAGCT	0.473													96	204					0	0	0.014410	0	0
CD177	57126	broad.mit.edu	37	19	43864436	43864436	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:43864436G>A	uc002owi.2	+	6	681	c.639G>A	c.(637-639)CGG>CGA	p.R213R	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	213					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				CCTGTCATCGGGGGACCACCA	0.557													7	18					0	0	0.001984	0	0
IRGQ	126298	broad.mit.edu	37	19	44097396	44097396	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:44097396C>T	uc002oww.2	-	2	772	c.654G>A	c.(652-654)GAG>GAA	p.E218E	IRGQ_uc010eiv.2_Silent_p.E218E	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	218							protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				TGCCCAGGCGCTCCAGGCCTG	0.672													30	50					0	0	0.008361	0	0
ZNF227	7770	broad.mit.edu	37	19	44739315	44739315	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:44739315C>T	uc002oyu.2	+	6	937	c.732C>T	c.(730-732)CCC>CCT	p.P244P	ZNF227_uc010xwu.1_Silent_p.P193P|ZNF227_uc002oyv.2_Silent_p.P244P|ZNF227_uc010xwv.1_Silent_p.P193P|ZNF227_uc010xww.1_Silent_p.P165P|ZNF227_uc002oyw.2_Silent_p.P216P|ZNF227_uc010ejh.2_Silent_p.P237P|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				AGAAATTACCCTTAGGAGAGA	0.428													10	40					0	0	0.006214	0	0
PVR	5817	broad.mit.edu	37	19	45157173	45157173	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:45157173C>T	uc002ozm.2	+	4	1028	c.729C>T	c.(727-729)CCC>CCT	p.P243P	PVR_uc010ejs.2_Silent_p.P243P|PVR_uc010xxb.1_Silent_p.P243P|PVR_uc010xxc.1_Silent_p.P243P|PVR_uc002ozn.2_Silent_p.P188P	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	243	Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		CTGCAGACCCCCCAGAGGTAT	0.587													106	204					0	0	0.014410	0	0
MARK4	57787	broad.mit.edu	37	19	45766591	45766591	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:45766591C>T	uc002pbb.1	+	4	326	c.321C>T	c.(319-321)GTC>GTT	p.V107V	MARK4_uc002paz.1_Intron|MARK4_uc002pba.1_Silent_p.V107V|MARK4_uc002pbc.1_5'Flank			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	107	Protein kinase.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TCCGAGAAGTCCGCATCATGA	0.567													28	61					0	0	0.009535	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570766	47570767	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:47570766_47570767GG>AA	uc002pga.3	-	15	2796_2797	c.2758_2759CC>TT	c.(2758-2760)CCG>TTG	p.P920L	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	920							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CGTTGGGGGCGGCCCAGACCCC	0.713													20	47					0	0	0.004672	0	0
SULT2B1	6820	broad.mit.edu	37	19	49055517	49055517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:49055517G>A	uc002pjl.2	+	1	89	c.8G>A	c.(7-9)GGG>GAG	p.G3E		NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	3				Missing: Increases the cholesterol sulfotransferase activity.|Missing: Loss of the cholesterol sulfotransferase activity.	3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		GCCATGGACGGGCCCGCCGAG	0.672													7	18					0	0	0.001984	0	0
CGB	1082	broad.mit.edu	37	19	49526155	49526155	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:49526155G>A	uc002plv.1	-	3	851	c.486C>T	c.(484-486)ATC>ATT	p.I162I	CGB_uc010yad.1_Silent_p.I162I|CGB_uc002plu.1_Silent_p.I148I	NM_000737	NP_000728	P01233	CGHB_HUMAN	chorionic gonadotropin beta 3 subunit precursor	162					apoptosis|cell-cell signaling|cellular nitrogen compound metabolic process|female gamete generation|hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Choriogonadotropin alfa(DB00097)	ATTGTGGGAGGATCGGGGTGT	0.607													31	18					0	0	0.005524	0	0
HRC	3270	broad.mit.edu	37	19	49658453	49658453	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:49658453C>T	uc002pmv.2	-	1	229	c.42G>A	c.(40-42)TGG>TGA	p.W14*	TRPM4_uc002pmw.2_5'Flank|TRPM4_uc010emu.2_5'Flank|TRPM4_uc010yak.1_5'Flank|TRPM4_uc002pmx.2_5'Flank|TRPM4_uc010emv.2_5'Flank|TRPM4_uc010yal.1_5'Flank	NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	14					muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		CCACCCCAGCCCAGAGGACAG	0.652													23	30					0	0	0.004656	0	0
MED25	81857	broad.mit.edu	37	19	50335672	50335672	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:50335672C>T	uc002ppw.1	+	13	1535	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	MED25_uc010ybe.1_Silent_p.F281F|MED25_uc002ppx.1_Silent_p.F275F	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	494	Interaction with VP16.|Interaction with CREBBP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		GCAACGGCTTCGTGAGTCCAG	0.587													4	11					0	0	0.000602	0	0
SHANK1	50944	broad.mit.edu	37	19	51190034	51190035	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:51190034_51190035CC>TT	uc002psx.1	-	19	2443_2444	c.2424_2425GG>AA	c.(2422-2427)ATGGAG>ATAAAG	p.808_809ME>IK	SHANK1_uc002psw.1_Missense_Mutation_p.192_193ME>IK	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	808_809					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CGCTTTTTCTCCATGCTGGGCA	0.589													18	35					0	0	0.004672	0	0
CTU1	90353	broad.mit.edu	37	19	51602387	51602387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:51602387G>A	uc010eop.2	-	3	583	c.518C>T	c.(517-519)GCC>GTC	p.A173V		NM_145232	NP_660275	Q7Z7A3	CTU1_HUMAN	ATP binding domain 3	173					tRNA thio-modification|tRNA wobble uridine modification	cytosol	ATP binding|protein binding|transferase activity|tRNA binding				0						CATGTCGTCGGCGTTGTGACC	0.473													5	3					0	0	0.001984	0	0
SIGLECP3	284367	broad.mit.edu	37	19	51671441	51671441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:51671441G>A	uc010ycv.1	+	3	590	c.580G>A	c.(580-582)GGA>AGA	p.G194R	SIGLECP3_uc010ycu.1_Missense_Mutation_p.G194R|SIGLECP3_uc002pvy.3_Missense_Mutation_p.G194R|SIGLECP3_uc002pvz.3_Missense_Mutation_p.G194R					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						CTGTGAGCAGGGAACACCCCC	0.632													28	56					0	0	0.005443	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033702	52033702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:52033702C>T	uc002pwy.2	-	4	905	c.743G>A	c.(742-744)GGA>GAA	p.G248E	SIGLEC6_uc002pwz.2_Intron|SIGLEC6_uc002pxa.2_Missense_Mutation_p.G248E|SIGLEC6_uc010ydb.1_Intron|SIGLEC6_uc010ydc.1_Missense_Mutation_p.G248E|SIGLEC6_uc010eoz.1_Missense_Mutation_p.G226E|SIGLEC6_uc010epb.1_Missense_Mutation_p.G201E|SIGLEC6_uc010epa.1_Missense_Mutation_p.G237E	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	248	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGCGCTGTTTCCTTGGAAGAT	0.572													17	35					0	0	0.006122	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130825	52130825	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:52130825C>T	uc002pxe.2	-	6	1311	c.1172G>A	c.(1171-1173)TGG>TAG	p.W391*		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	391	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		GCTGTTGGCCCAGGGCCCAGC	0.657													14	26					0	0	0.003163	0	0
ZNF528	84436	broad.mit.edu	37	19	52918407	52918407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:52918407G>A	uc002pzh.2	+	7	728	c.302G>A	c.(301-303)GGA>GAA	p.G101E	ZNF528_uc002pzi.2_5'UTR	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		AGTAATGCAGGAAACAAGCCT	0.378													15	39					0	0	0.010504	0	0
ZNF28	7576	broad.mit.edu	37	19	53303783	53303783	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:53303783A>T	uc002qad.2	-	4	1435	c.1315T>A	c.(1315-1317)TAC>AAC	p.Y439N	ZNF28_uc002qac.2_Missense_Mutation_p.Y386N|ZNF28_uc010eqe.2_Missense_Mutation_p.Y385N	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	439	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TTACACTTGTAAGGCTTCTCT	0.368													57	119					0	0	0.014410	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55049201	55049201	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55049201C>T	uc010erm.2	+	2	279	c.267C>T	c.(265-267)CTC>CTT	p.L89L	KIR3DX1_uc010yfa.1_RNA|KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA					Homo sapiens killer cell immunoglobulin-like receptor, three domains, X1, mRNA (cDNA clone IMAGE:4849085).											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TAAGAGTACTCCTCTGTCATT	0.343													36	71					0	0	0.008740	0	0
LILRA1	11024	broad.mit.edu	37	19	55107260	55107260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55107260C>T	uc002qgh.1	+	6	1000	c.818C>T	c.(817-819)CCC>CTC	p.P273L	LILRA2_uc010yfg.1_Missense_Mutation_p.P271L|LILRA1_uc010yfh.1_Missense_Mutation_p.P273L	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	273	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GGCCCACAGCCCCAGGCTGGG	0.602													43	58					0	0	0.013114	0	0
LILRB1	10859	broad.mit.edu	37	19	55143446	55143446	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55143446A>T	uc002qgj.2	+	6	759	c.419A>T	c.(418-420)AAT>ATT	p.N140I	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.N140I|LILRB1_uc002qgk.2_Missense_Mutation_p.N140I|LILRB1_uc002qgm.2_Missense_Mutation_p.N140I|LILRB1_uc010erq.2_Missense_Mutation_p.N140I|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	140	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCAGGAGGGAATGTAATCCTC	0.542										HNSCC(37;0.09)			43	66					0	0	0.009718	0	0
NCR1	9437	broad.mit.edu	37	19	55423543	55423543	+	Silent	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55423543T>G	uc002qib.2	+	6	728	c.690T>G	c.(688-690)ACT>ACG	p.T230T	NCR1_uc002qic.2_Silent_p.T229T|NCR1_uc002qie.2_Intron|NCR1_uc002qid.2_Silent_p.T135T|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Silent_p.T123T	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	230	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		CAGCAGACACTTGGGGCACCT	0.537													32	74					0	0	0.006230	0	0
NLRP7	199713	broad.mit.edu	37	19	55450786	55450786	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55450786G>A	uc002qih.3	-	4	1477	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	NLRP7_uc002qig.3_Silent_p.I467I|NLRP7_uc002qii.3_Silent_p.I467I|NLRP7_uc010esk.2_Silent_p.I467I|NLRP7_uc010esl.2_Silent_p.I495I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	467	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		AGCTGAGGTGGATGAAGGAGT	0.622													23	35					0	0	0.002780	0	0
UBE2S	27338	broad.mit.edu	37	19	55913083	55913083	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:55913083G>A	uc002qkx.1	-	4	758	c.390C>T	c.(388-390)AAC>AAT	p.N130N		NM_014501	NP_055316	Q16763	UBE2S_HUMAN	ubiquitin-conjugating enzyme E2S	130					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|exit from mitosis|free ubiquitin chain polymerization|protein K11-linked ubiquitination|protein K27-linked ubiquitination|protein K29-linked ubiquitination|protein K6-linked ubiquitination|protein K63-linked ubiquitination	anaphase-promoting complex	ATP binding|ubiquitin-protein ligase activity				0	Breast(117;0.155)		LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.11)		CCGCCTCCTCGTTGAGTGCAG	0.667													18	16					0	0	0.008871	0	0
NLRP5	126206	broad.mit.edu	37	19	56539478	56539478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:56539478C>T	uc002qmj.2	+	7	1879	c.1879C>T	c.(1879-1881)CAT>TAT	p.H627Y	NLRP5_uc002qmi.2_Missense_Mutation_p.H608Y	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	627						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GGCAGGCTTCCATATCCACTC	0.552													34	48					0	0	0.004878	0	0
ZNF71	58491	broad.mit.edu	37	19	57133296	57133296	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:57133296A>T	uc002qnm.3	+	3	879	c.641A>T	c.(640-642)TAT>TTT	p.Y214F		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	214	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GAGAAGCCGTATGTGTGCGAC	0.657													16	37					0	0	0.004007	0	0
PEG3	5178	broad.mit.edu	37	19	57325061	57325061	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:57325061C>T	uc002qnu.2	-	7	5100	c.4749G>A	c.(4747-4749)CAG>CAA	p.Q1583Q	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.Q1554Q|PEG3_uc002qnv.2_Silent_p.Q1583Q|PEG3_uc002qnw.2_Silent_p.Q1459Q|PEG3_uc002qnx.2_Silent_p.Q1457Q|PEG3_uc010etr.2_Silent_p.Q1583Q|PEG3AS_uc010ets.1_RNA	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1583	C2H2-type 12.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGTGGGTATTCTGGTGTCTGG	0.507													17	43					0	0	0.010504	0	0
ASAP2	8853	broad.mit.edu	37	2	9541480	9541481	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:9541480_9541481GG>AA	uc002qzh.2	+	27	3241_3242	c.2901_2902GG>AA	c.(2899-2904)GAGGGG>GAAAGG	p.G968R	ASAP2_uc002qzi.2_Missense_Mutation_p.G923R	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	968	SH3.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						CCTTCTCCGAGGGGGATGTGAT	0.614													25	40					0	0	0.004672	0	0
GREB1	9687	broad.mit.edu	37	2	11733049	11733049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:11733049C>T	uc002rbk.1	+	11	1793	c.1493C>T	c.(1492-1494)TCC>TTC	p.S498F	GREB1_uc002rbo.1_Missense_Mutation_p.S132F	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	498						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CCCGTGACCTCCGCGCAGCTG	0.731													5	8					0	0	0.000602	0	0
GREB1	9687	broad.mit.edu	37	2	11773139	11773139	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:11773139C>T	uc002rbk.1	+	28	5241	c.4941C>T	c.(4939-4941)TCC>TCT	p.S1647S	GREB1_uc002rbp.1_Silent_p.S645S	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1647						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CTGATGACTCCTGCGTGATGT	0.562													28	60					0	0	0.009535	0	0
NBAS	51594	broad.mit.edu	37	2	15470890	15470890	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:15470890C>T	uc002rcc.1	-	36	4206	c.4180_splice	c.e36-1	p.D1394_splice	NBAS_uc010exl.1_Splice_Site_p.D466_splice|NBAS_uc002rcd.1_Splice_Site	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein											ovary(2)|liver(1)|skin(1)	4						CTACTTCATCCTGTATTAAAG	0.403													16	27					0	0	0.004990	0	0
APOB	338	broad.mit.edu	37	2	21250765	21250765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:21250765G>A	uc002red.2	-	14	2130	c.2002C>T	c.(2002-2004)CCT>TCT	p.P668S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	668	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTTCTTTAGGAAGGTAGTTA	0.418													59	101					0	0	0.014410	0	0
CAD	790	broad.mit.edu	37	2	27447254	27447254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:27447254C>T	uc002rji.2	+	9	1312	c.1150C>T	c.(1150-1152)CCC>TCC	p.P384S	CAD_uc010eyw.2_Missense_Mutation_p.P384S	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	384	Linker.				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CCCTGGGATTCCCACTCCCGG	0.473													34	66					0	0	0.004878	0	0
GCKR	2646	broad.mit.edu	37	2	27726415	27726415	+	Nonsense_Mutation	SNP	C	T	T	rs149847328		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:27726415C>T	uc002rky.2	+	9	745	c.679C>T	c.(679-681)CGA>TGA	p.R227*	GCKR_uc010ezd.2_Nonsense_Mutation_p.R227*|GCKR_uc010ylu.1_Nonsense_Mutation_p.R37*	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	227	SIS 1.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TTCAACATTCCGACAAGTAGC	0.493													17	24					0	0	0.007413	0	0
C2orf71	388939	broad.mit.edu	37	2	29294885	29294885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:29294885C>T	uc002rmt.1	-	1	2243	c.2243G>A	c.(2242-2244)GGG>GAG	p.G748E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	748					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTTAGAGTCCCCCAGCATCCT	0.557													27	45					0	0	0.004656	0	0
LTBP1	4052	broad.mit.edu	37	2	33540274	33540274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:33540274G>A	uc002ros.2	+	24	3671	c.3671G>A	c.(3670-3672)GGT>GAT	p.G1224D	LTBP1_uc002rot.2_Missense_Mutation_p.G898D|LTBP1_uc002rou.2_Missense_Mutation_p.G897D|LTBP1_uc002rov.2_Missense_Mutation_p.G844D|LTBP1_uc010ymz.1_Missense_Mutation_p.G897D|LTBP1_uc010yna.1_Missense_Mutation_p.G844D|LTBP1_uc010ynb.1_Missense_Mutation_p.G163D	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1223	EGF-like 12; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AACACAGAGGGTTCTTTCCAT	0.403													29	51					0	0	0.009535	0	0
SULT6B1	391365	broad.mit.edu	37	2	37395083	37395083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:37395083C>T	uc002rpu.2	-	7	814	c.793G>A	c.(793-795)GGT>AGT	p.G265S	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	303						cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TGGAATCAACCCTGGCAATAT	0.294													42	85					0	0	0.014410	0	0
SRBD1	55133	broad.mit.edu	37	2	45829063	45829063	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:45829063G>A	uc002rus.2	-	3	316	c.240C>T	c.(238-240)GTC>GTT	p.V80V		NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	80	Poly-Val.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			TAACAACAACGACTTCTGAGC	0.483													87	126					0	0	0.014410	0	0
EPAS1	2034	broad.mit.edu	37	2	46607833	46607834	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:46607833_46607834CC>AT	uc002ruv.2	+	12	2510_2511	c.2022_2023CC>AT	c.(2020-2025)CCCCAT>CCATAT	p.H675Y	EPAS1_uc002ruw.2_Missense_Mutation_p.H141Y	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	675					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			TCTCTCCACCCCATGTCTCCAC	0.594													29	120					0	0	0.004672	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739710	46739710	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:46739710T>C	uc002ruy.2	-	2	1255	c.141A>G	c.(139-141)CAA>CAG	p.Q47Q	ATP6V1E2_uc002ruz.2_Silent_p.Q47Q	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	47					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			GTCGTTGGGTTTGCACGAGGC	0.458													67	115					0	0	0.014410	0	0
LHCGR	3973	broad.mit.edu	37	2	48915500	48915500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:48915500C>T	uc002rwu.3	-	11	1506	c.1436G>A	c.(1435-1437)CGA>CAA	p.R479Q	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	479	Cytoplasmic (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	ATGTCTTAATCGCAGCTTTTG	0.448									Familial_Male-Limited_Precocious_Puberty				33	40					0	0	0.013726	0	0
NRXN1	9378	broad.mit.edu	37	2	50780024	50780024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:50780024G>A	uc010fbq.2	-	9	3057	c.1580C>T	c.(1579-1581)CCA>CTA	p.P527L	NRXN1_uc002rxb.3_Missense_Mutation_p.P159L|NRXN1_uc002rxe.3_Missense_Mutation_p.P487L|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GAAAGACTCTGGGGTTTCAAA	0.418													35	89					0	0	0.012213	0	0
PSME4	23198	broad.mit.edu	37	2	54153116	54153116	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:54153116G>A	uc002rxp.2	-	13	1694	c.1638C>T	c.(1636-1638)TTC>TTT	p.F546F	PSME4_uc010yop.1_Silent_p.F432F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	546					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACTGTAAGACGAAATCCTCAA	0.363													21	41					0	0	0.002780	0	0
CCDC85A	114800	broad.mit.edu	37	2	56420542	56420542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:56420542C>T	uc002rzn.2	+	2	1709	c.1207C>T	c.(1207-1209)CCC>TCC	p.P403S		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	403										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GGACGGGTCACCCCATCACCG	0.607													6	9					0	0	0.001168	0	0
BCL11A	53335	broad.mit.edu	37	2	60773247	60773247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:60773247C>T	uc002sae.1	-	2	472	c.244G>A	c.(244-246)GAT>AAT	p.D82N	BCL11A_uc002sab.2_Missense_Mutation_p.D82N|BCL11A_uc002sac.2_Missense_Mutation_p.D82N|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Missense_Mutation_p.D82N|BCL11A_uc002saf.1_Missense_Mutation_p.D82N|BCL11A_uc010fcg.2_Missense_Mutation_p.D82N	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	82	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GGTGGCTTATCCACAGCTTTT	0.478			T	IGH@	B-CLL								76	118					0	0	0.014410	0	0
REL	5966	broad.mit.edu	37	2	61149089	61149089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:61149089C>T	uc002sam.1	+	11	1503	c.1279C>T	c.(1279-1281)CCA>TCA	p.P427S	REL_uc002san.1_Missense_Mutation_p.P395S	NM_002908	NP_002899	Q04864	REL_HUMAN	v-rel reticuloendotheliosis viral oncogene	427					positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	all_hematologic(2;0.0797)	Ovarian(717;0.0728)	LUSC - Lung squamous cell carcinoma(5;6.2e-08)|Lung(5;1.65e-06)|Epithelial(17;0.064)|all cancers(80;0.221)			CAATACAAACCCACTGAGTAG	0.473			A		Hodgkin Lymphoma								28	49					0	0	0.006320	0	0
GKN1	56287	broad.mit.edu	37	2	69207869	69207869	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:69207869C>T	uc002sfc.2	+	6	577	c.514C>T	c.(514-516)CTG>TTG	p.L172L		NM_019617	NP_062563	Q9NS71	GKN1_HUMAN	18 kDa antrum mucosa protein precursor	172					digestion|positive regulation of cell division	extracellular region				breast(1)	1						AGAGGCAAGCCTGTTTTTTTA	0.408													24	32					0	0	0.005443	0	0
CLEC4F	165530	broad.mit.edu	37	2	71044000	71044000	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:71044000A>G	uc002shf.2	-	4	590	c.513T>C	c.(511-513)AGT>AGC	p.S171S	CLEC4F_uc010yqv.1_Silent_p.S171S	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	171	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						CCTCCAGGGAACTCCTTAACA	0.443													28	54					0	0	0.008361	0	0
DYSF	8291	broad.mit.edu	37	2	71709086	71709086	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:71709086G>A	uc002sie.2	+	3	598	c.222G>A	c.(220-222)ACG>ACA	p.T74T	DYSF_uc010feg.2_Silent_p.T74T|DYSF_uc010feh.2_Silent_p.T74T|DYSF_uc002sig.3_Silent_p.T74T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.T74T|DYSF_uc010fef.2_Silent_p.T74T|DYSF_uc010fei.2_Silent_p.T74T|DYSF_uc010fek.2_Silent_p.T75T|DYSF_uc010fej.2_Silent_p.T75T|DYSF_uc010fel.2_Silent_p.T75T|DYSF_uc010feo.2_Silent_p.T75T|DYSF_uc010fem.2_Silent_p.T75T|DYSF_uc010fen.2_Silent_p.T75T|DYSF_uc002sif.2_Silent_p.T75T	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	74	Cytoplasmic (Potential).|C2 1.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACCATGAGACGATGGGGAGGA	0.552													13	29					0	0	0.001855	0	0
ALMS1	7840	broad.mit.edu	37	2	73675962	73675962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:73675962C>T	uc002sje.1	+	10	2422	c.2311C>T	c.(2311-2313)CCT>TCT	p.P771S	ALMS1_uc002sjf.1_Missense_Mutation_p.P727S|ALMS1_uc002sjg.2_Missense_Mutation_p.P157S|ALMS1_uc002sjh.1_Missense_Mutation_p.P157S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	769	5.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AAGAGAAAAGCCTAGTATTTT	0.468													73	170					0	0	0.014410	0	0
SEMA4F	10505	broad.mit.edu	37	2	74883773	74883773	+	Silent	SNP	C	T	T	rs144632103		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:74883773C>T	uc002sna.1	+	2	369	c.258C>T	c.(256-258)TTC>TTT	p.F86F	SEMA4F_uc010ysb.1_Silent_p.F86F|SEMA4F_uc010ffq.1_Silent_p.F86F|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_5'UTR|SEMA4F_uc002snc.1_Silent_p.F86F	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	86	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ACACCATCTTCGCTTTATCCC	0.532													31	58					0	0	0.009535	0	0
HK2	3099	broad.mit.edu	37	2	75116533	75116533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:75116533G>A	uc002snd.2	+	17	4463	c.2537G>A	c.(2536-2538)CGA>CAA	p.R846Q		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	846	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GACAGGATACGAGAAAACCGT	0.612													18	17					0	0	0.004990	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88885506	88885506	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:88885506G>A	uc002stc.3	-	9	1705	c.1503C>T	c.(1501-1503)CTC>CTT	p.L501L		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	501	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTGGGTTGTCGAGGAATCTGA	0.353													98	175					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	2	89416905	89416905	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:89416905G>A	uc010ytr.1	-	42		c.4697C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TTGTGAGAGTGAATTCTGTCC	0.483													29	82					0	0	0.008740	0	0
Unknown	0	broad.mit.edu	37	2	89475818	89475818	+	RNA	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:89475818T>A	uc010ytr.1	-	28		c.3663A>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGTGAGGAAATTGTGTAGCTT	0.502													50	39					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	2	90122116	90122116	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:90122116C>T	uc010fhm.2	+	16		c.1985C>T								Parts of antibodies, mostly variable regions.																		TTACTGTCTACAGCATAATAG	0.522													47	82					0	0	0.014410	0	0
GPAT2	150763	broad.mit.edu	37	2	96689735	96689735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:96689735G>A	uc002svf.2	-	17	2055	c.1832C>T	c.(1831-1833)TCC>TTC	p.S611F	GPAT2_uc002svd.2_Missense_Mutation_p.S430F|GPAT2_uc002sve.2_Missense_Mutation_p.S413F|GPAT2_uc002svg.2_Missense_Mutation_p.S490F|GPAT2_uc010yuh.1_Missense_Mutation_p.S540F|GPAT2_uc002svh.2_Missense_Mutation_p.S611F	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	611					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						GTAGCAGTAGGAAGACTGGCA	0.617													5	3					0	0	0.001984	0	0
VWA3B	200403	broad.mit.edu	37	2	98851177	98851177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:98851177G>A	uc002syo.2	+	17	2639	c.2375G>A	c.(2374-2376)AGG>AAG	p.R792K	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.R311K|VWA3B_uc002sym.2_Missense_Mutation_p.R792K|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.R449K|VWA3B_uc002syp.1_Missense_Mutation_p.R184K|VWA3B_uc002syq.1_Missense_Mutation_p.R68K|VWA3B_uc002syr.1_Missense_Mutation_p.R109K|VWA3B_uc010fih.1_5'Flank	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	792										ovary(3)|large_intestine(2)|skin(1)	6						TGCAGTGAAAGGAAGGATGGC	0.527													19	12					0	0	0.008871	0	0
EDAR	10913	broad.mit.edu	37	2	109513555	109513555	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:109513555C>T	uc002teq.3	-	12	1586	c.1155G>A	c.(1153-1155)AGG>AGA	p.R385R	EDAR_uc010fjn.2_Silent_p.R417R|EDAR_uc010yws.1_Silent_p.R417R	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	385	Death.|Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CAATCTCATCCCTCTTCAGGC	0.562													20	8					0	0	0.012319	0	0
EPB41L5	57669	broad.mit.edu	37	2	120834608	120834608	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:120834608C>T	uc002tmg.2	+	8	693	c.567C>T	c.(565-567)TTC>TTT	p.F189F	EPB41L5_uc010flk.2_Silent_p.F189F|EPB41L5_uc010fll.2_Silent_p.F189F|EPB41L5_uc002tmh.3_Silent_p.F189F|EPB41L5_uc010flm.2_5'UTR	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	189	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						AGTTCAGATTCGTGCCTATTC	0.378													51	50					0	0	0.014410	0	0
POTEF	728378	broad.mit.edu	37	2	130877694	130877694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:130877694C>T	uc010fmh.2	-	3	795	c.395G>A	c.(394-396)AGG>AAG	p.R132K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	132						cell cortex	ATP binding			skin(3)|ovary(2)	5						GACGTGGTACCTGGGCTCCAT	0.597													32	28					0	0	0.004878	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540580	133540580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:133540580C>T	uc002ttp.2	-	14	4178	c.3804G>A	c.(3802-3804)ATG>ATA	p.M1268I	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1268							protein binding				0						TGGCGCCATTCATACCCAGAG	0.537													48	40					0	0	0.014410	0	0
YSK4	80122	broad.mit.edu	37	2	135744915	135744915	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:135744915C>T	uc002tue.1	-	7	1558	c.1527G>A	c.(1525-1527)AAG>AAA	p.K509K	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Silent_p.K396K|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Silent_p.K237K|YSK4_uc002tui.3_Silent_p.K526K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	509							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GAATGGTTCCCTTTCTTGTTT	0.438													32	22					0	0	0.008361	0	0
EPC2	26122	broad.mit.edu	37	2	149528724	149528724	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:149528724T>G	uc010zbt.1	+	10	1515	c.1488T>G	c.(1486-1488)AAT>AAG	p.N496K		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	496					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		TTTCTTCTAATTTCTCTCGGA	0.383													17	17					0	0	0.004007	0	0
NEB	4703	broad.mit.edu	37	2	152507370	152507370	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:152507370T>C	uc010fnx.2	-	53	7136	c.6945A>G	c.(6943-6945)CAA>CAG	p.Q2315Q		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2315					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGTGGCCAAGTTGCTTTCGGT	0.398													70	48					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152520169	152520169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:152520169C>T	uc010fnx.2	-	45	5847	c.5656G>A	c.(5656-5658)GAA>AAA	p.E1886K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1886	Nebulin 49.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTGGCCACTTCCTGAGACTTC	0.493													24	10					0	0	0.014323	0	0
PKP4	8502	broad.mit.edu	37	2	159523019	159523019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:159523019C>T	uc002tzv.2	+	16	2932	c.2672C>T	c.(2671-2673)TCC>TTC	p.S891F	PKP4_uc002tzu.2_Missense_Mutation_p.S891F|PKP4_uc002tzw.2_Missense_Mutation_p.S891F|PKP4_uc002tzx.2_Missense_Mutation_p.S548F|PKP4_uc002uaa.2_Missense_Mutation_p.S743F|uc002uab.1_Intron|PKP4_uc002uac.2_Missense_Mutation_p.S72F|PKP4_uc002uad.2_RNA|PKP4_uc002uae.1_5'Flank	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	891	ARM 8.				cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						GTTGTTTCTTCCGTGGCAACA	0.483										HNSCC(62;0.18)			39	36					0	0	0.009718	0	0
BAZ2B	29994	broad.mit.edu	37	2	160245888	160245888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:160245888G>A	uc002uao.2	-	21	3536	c.3184C>T	c.(3184-3186)CCT>TCT	p.P1062S	BAZ2B_uc002uap.2_Missense_Mutation_p.P1026S	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1062					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TCTTCATTAGGCTTCTTTAGT	0.338													44	27					0	0	0.014410	0	0
FAP	2191	broad.mit.edu	37	2	163029330	163029330	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:163029330G>A	uc002ucd.2	-	25	2380	c.2172C>T	c.(2170-2172)TTC>TTT	p.F724F	FAP_uc010fpc.2_Silent_p.F273F|FAP_uc010zct.1_Silent_p.F699F|FAP_uc010fpd.2_Silent_p.F203F	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	724	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						CCATTGCCTGGAAATCCACTT	0.358													15	16					0	0	0.004990	0	0
GALNT3	2591	broad.mit.edu	37	2	166611212	166611212	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:166611212A>G	uc010fph.1	-	9	1938	c.1551T>C	c.(1549-1551)TGT>TGC	p.C517C		NM_004482	NP_004473	Q14435	GALT3_HUMAN	polypeptide N-acetylgalactosaminyltransferase 3	517	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	Golgi cisterna membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	calcium ion binding|manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(2)|ovary(1)	3						CAACATCCAGACATAGAGGCT	0.318													17	7					0	0	0.007413	0	0
SCN9A	6335	broad.mit.edu	37	2	167134768	167134768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:167134768G>A	uc010fpl.2	-	15	2707	c.2366C>T	c.(2365-2367)CCA>CTA	p.P789L	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	800	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ATACTCATATGGATCCATGGC	0.348													22	10					0	0	0.014323	0	0
SCN7A	6332	broad.mit.edu	37	2	167327137	167327137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:167327137G>A	uc002udu.1	-	6	779	c.652C>T	c.(652-654)CCT>TCT	p.P218S	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	218	Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TGATTTAAAGGAATAATTTTT	0.323													6	4					0	0	0.001168	0	0
SCN7A	6332	broad.mit.edu	37	2	167334152	167334152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:167334152C>T	uc002udu.1	-	2	182	c.55G>A	c.(55-57)GAA>AAA	p.E19K	SCN7A_uc002udv.1_Missense_Mutation_p.E19K	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	19					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TTTATAAGTTCAAAAGACTCT	0.358													4	8					0	0	0.000602	0	0
XIRP2	129446	broad.mit.edu	37	2	168101889	168101889	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:168101889G>A	uc002udx.2	+	8	4005	c.3987G>A	c.(3985-3987)GGG>GGA	p.G1329G	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.G1154G|XIRP2_uc010fpq.2_Silent_p.G1107G|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1154					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACCGAGAAGGGTCCTATCATG	0.393													38	14					0	0	0.006230	0	0
ABCB11	8647	broad.mit.edu	37	2	169826677	169826677	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:169826677G>A	uc002ueo.1	-	15	1813	c.1687C>T	c.(1687-1689)CAG>TAG	p.Q563*	ABCB11_uc010zda.1_Nonsense_Mutation_p.Q5*|ABCB11_uc010zdb.1_Nonsense_Mutation_p.Q39*	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	563	Cytoplasmic (Potential).|ABC transporter 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CTTTGTTTCTGGCCACCACTC	0.498													19	10					0	0	0.007413	0	0
MYO3B	140469	broad.mit.edu	37	2	171371479	171371479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:171371479G>A	uc002ufy.2	+	29	3562	c.3419G>A	c.(3418-3420)GGT>GAT	p.G1140D	MYO3B_uc002ufv.2_Missense_Mutation_p.G1127D|MYO3B_uc010fqb.1_Missense_Mutation_p.G1127D|MYO3B_uc002ufz.2_Missense_Mutation_p.G1113D|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	1140					response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						GTCGCAGCAGGTACGAGGGGA	0.493													14	12					0	0	0.003163	0	0
DYNC1I2	1781	broad.mit.edu	37	2	172582157	172582157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:172582157C>T	uc002uha.1	+	8	706	c.541C>T	c.(541-543)CCT>TCT	p.P181S	DYNC1I2_uc002uhc.2_Missense_Mutation_p.P155S|DYNC1I2_uc002uhb.1_Missense_Mutation_p.P155S|DYNC1I2_uc010zds.1_Missense_Mutation_p.P173S|DYNC1I2_uc002uhd.1_Missense_Mutation_p.P175S|DYNC1I2_uc002uhe.1_Missense_Mutation_p.P181S|DYNC1I2_uc002uhf.1_Missense_Mutation_p.P155S|DYNC1I2_uc010zdt.1_Missense_Mutation_p.P173S|DYNC1I2_uc002uhg.1_Missense_Mutation_p.P96S|DYNC1I2_uc010zdu.1_5'Flank	NM_001378	NP_001369	Q13409	DC1I2_HUMAN	dynein, cytoplasmic 1, intermediate chain 2	181					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|microtubule-based movement|transport	centrosome|cytosol|dynein complex|microtubule|vesicle	microtubule motor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.198)			TGTAGTGGCTCCTAAACCACC	0.229													11	7					0	0	0.013537	0	0
HOXD4	3233	broad.mit.edu	37	2	177017652	177017652	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:177017652G>A	uc002uks.2	+	2	999	c.750G>A	c.(748-750)ACG>ACA	p.T250T		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	250						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		ACCACCACACGGACCTGACGA	0.622													32	33					0	0	0.004878	0	0
HOXD3	3232	broad.mit.edu	37	2	177034231	177034231	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:177034231C>T	uc002ukt.1	+	2	565	c.389C>T	c.(388-390)TCA>TTA	p.S130L		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	130					anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		cccccatcttcacccACCAAT	0.463													12	20					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179475812	179475812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:179475812G>A	uc010zfg.1	-	219	43564	c.43340C>T	c.(43339-43341)CCC>CTC	p.P14447L	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P8142L|TTN_uc010zfi.1_Missense_Mutation_p.P8075L|TTN_uc010zfj.1_Missense_Mutation_p.P7950L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15374							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACACTCTTGGGAACTTCAAG	0.413													36	33					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179583125	179583125	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:179583125C>T	uc010zfg.1	-	82	21200	c.20976G>A	c.(20974-20976)GAG>GAA	p.E6992E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E3653E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7919							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGCATAATCCTCTATTGTGC	0.403													17	24					0	0	0.006122	0	0
PDE1A	5136	broad.mit.edu	37	2	183099206	183099206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:183099206G>A	uc002uos.2	-	5	502	c.418C>T	c.(418-420)CAT>TAT	p.H140Y	PDE1A_uc010zfp.1_Missense_Mutation_p.H36Y|PDE1A_uc002uoq.1_Missense_Mutation_p.H140Y|PDE1A_uc010zfq.1_Missense_Mutation_p.H140Y|PDE1A_uc002uor.2_Missense_Mutation_p.H124Y|PDE1A_uc002uou.2_Missense_Mutation_p.H106Y	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	140					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			CCAACCATATGATATGTTTTT	0.264													27	27					0	0	0.009535	0	0
MFSD6	54842	broad.mit.edu	37	2	191302198	191302198	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:191302198C>T	uc002urz.2	+	3	1767	c.1443C>T	c.(1441-1443)CTC>CTT	p.L481L		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	481	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2						CTACAACCCTCTTTGGGGTCT	0.448													72	56					0	0	0.014410	0	0
DNAH7	56171	broad.mit.edu	37	2	196791160	196791160	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:196791160A>G	uc002utj.3	-	22	3703	c.3602T>C	c.(3601-3603)ATG>ACG	p.M1201T		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1201	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTTTATCCCCATTGGAATAGC	0.323													30	8					0	0	0.013726	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203806695	203806695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:203806695G>A	uc002uzo.2	+	3	350	c.70G>A	c.(70-72)GTA>ATA	p.V24I	ALS2CR8_uc002uzn.2_Intron|ALS2CR8_uc002uzm.2_Missense_Mutation_p.V24I|ALS2CR8_uc010zhy.1_Missense_Mutation_p.V24I|ALS2CR8_uc010zhz.1_Intron|ALS2CR8_uc010ftu.1_Intron|ALS2CR8_uc010zia.1_Missense_Mutation_p.V24I|ALS2CR8_uc010zib.1_Missense_Mutation_p.V24I|ALS2CR8_uc010zic.1_Intron|ALS2CR8_uc002uzp.2_Missense_Mutation_p.V24I	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	24										large_intestine(1)|ovary(1)	2						CAGTGCTCAAGTATTTGAGGT	0.373													54	38					0	0	0.014410	0	0
ERBB4	2066	broad.mit.edu	37	2	212587144	212587145	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:212587144_212587145CC>AT	uc002veg.1	-	7	954_955	c.856_857GG>AT	c.(856-858)GGA>ATA	p.G286I	ERBB4_uc002veh.1_Missense_Mutation_p.G286I|ERBB4_uc010zji.1_Missense_Mutation_p.G286I|ERBB4_uc010zjj.1_Missense_Mutation_p.G286I|ERBB4_uc010fut.1_Missense_Mutation_p.G286I	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	286	Cys-rich.|Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ACAGAATGCTCCATATGTGTAC	0.347										TSP Lung(8;0.080)			14	15					0	0	0.004672	0	0
FN1	2335	broad.mit.edu	37	2	216274369	216274369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:216274369G>A	uc002vfa.2	-	15	2482	c.2216C>T	c.(2215-2217)TCC>TTC	p.S739F	FN1_uc002vfb.2_Missense_Mutation_p.S739F|FN1_uc002vfc.2_Missense_Mutation_p.S739F|FN1_uc002vfd.2_Missense_Mutation_p.S739F|FN1_uc002vfe.2_Missense_Mutation_p.S739F|FN1_uc002vff.2_Missense_Mutation_p.S739F|FN1_uc002vfg.2_Missense_Mutation_p.S739F|FN1_uc002vfh.2_Missense_Mutation_p.S739F|FN1_uc002vfi.2_Missense_Mutation_p.S739F|FN1_uc002vfj.2_Missense_Mutation_p.S739F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	739	Fibronectin type-III 2.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAGACCCAGGAGACCACAAA	0.537													17	18					0	0	0.006122	0	0
MARCH4	57574	broad.mit.edu	37	2	217124116	217124116	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:217124116G>A	uc002vgb.2	-	4	2919	c.1152C>T	c.(1150-1152)ATC>ATT	p.I384I		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	384						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		AGTGACTCAGGATGTGCAGGA	0.637													32	20					0	0	0.013726	0	0
PLCD4	84812	broad.mit.edu	37	2	219492943	219492943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:219492943G>A	uc002vij.1	+	7	1159	c.964G>A	c.(964-966)GGA>AGA	p.G322R	PLCD4_uc002vik.1_Missense_Mutation_p.G169R|PLCD4_uc010zkk.1_Intron	NM_032726	NP_116115	Q9BRC7	PLCD4_HUMAN	phospholipase C, delta 4	322	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	endoplasmic reticulum|membrane|nucleus	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)	3		Renal(207;0.0915)		Epithelial(149;5.11e-07)|all cancers(144;0.000104)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CAGCGTCGAGGGATATATACG	0.512													56	35					0	0	0.014410	0	0
PRKAG3	53632	broad.mit.edu	37	2	219693282	219693283	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:219693282_219693283CC>TT	uc002vjb.1	-	5	693_694	c.674_675GG>AA	c.(673-675)CGG>CAA	p.R225Q	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.R225Q	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	225	CBS 1.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAGGGGCTGCCCGCACACCGTT	0.614													5	6					0	0	0.004672	0	0
COL4A3	1285	broad.mit.edu	37	2	228142233	228142233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:228142233C>T	uc002vom.1	+	28	2251	c.2089C>T	c.(2089-2091)CCA>TCA	p.P697S	COL4A3_uc002von.1_Missense_Mutation_p.P697S|COL4A3_uc002voo.1_Missense_Mutation_p.P697S|COL4A3_uc002vop.1_Missense_Mutation_p.P697S|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	697	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		ACCAGGAATTCCAGGAATTGG	0.408													9	6					0	0	0.008291	0	0
NCL	4691	broad.mit.edu	37	2	232326725	232326725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:232326725C>T	uc002vru.2	-	3	280	c.139G>A	c.(139-141)GTC>ATC	p.V47I	SNORD82_uc010fxw.1_5'Flank	NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	47					angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		TGAGGTATGACGACCTTGAGA	0.473													47	48					0	0	0.014410	0	0
UGT1A1	54658	broad.mit.edu	37	2	234669350	234669350	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:234669350C>T	uc002vvb.2	+	1	432	c.417C>T	c.(415-417)TCC>TCT	p.S139S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Silent_p.S139S	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	139					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	TCATGGCCTCCCTGGCAGAAA	0.498													40	31					0	0	0.005524	0	0
IQCA1	79781	broad.mit.edu	37	2	237285763	237285763	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:237285763T>C	uc002vvz.1	-	13	1726	c.1544A>G	c.(1543-1545)AAC>AGC	p.N515S	IQCA1_uc002vwb.2_Missense_Mutation_p.N523S|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.N474S	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	515							ATP binding			ovary(1)	1						ATCAGAGAGGTTGACTTTCAG	0.418													34	31					0	0	0.004878	0	0
SNED1	25992	broad.mit.edu	37	2	242004792	242004792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:242004792G>A	uc002wah.1	+	21	2791	c.2791G>A	c.(2791-2793)GGT>AGT	p.G931S	SNED1_uc002wai.1_Missense_Mutation_p.G166S|SNED1_uc002waj.1_Missense_Mutation_p.G18S|SNED1_uc002wak.2_Missense_Mutation_p.G18S	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	931	Fibronectin type-III 1.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		CCCGCCCAATGGTCCAGCCGC	0.607													20	12					0	0	0.007413	0	0
NEU4	129807	broad.mit.edu	37	2	242758271	242758271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:242758271C>T	uc010fzr.2	+	4	1438	c.1352C>T	c.(1351-1353)TCC>TTC	p.S451F	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.S451F|NEU4_uc002wcn.1_Missense_Mutation_p.S463F|NEU4_uc002wco.1_Missense_Mutation_p.S451F|NEU4_uc002wcp.1_Missense_Mutation_p.S463F	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	451						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		GATGAGATTTCCTTTTGTACA	0.652													11	7					0	0	0.008291	0	0
FAM110A	83541	broad.mit.edu	37	20	826242	826242	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:826242C>T	uc002wef.1	+	2	1131	c.795C>T	c.(793-795)CCC>CCT	p.P265P	FAM110A_uc002weg.1_Silent_p.P265P|FAM110A_uc002weh.1_Silent_p.P265P|FAM110A_uc010fzz.2_RNA	NM_001042353	NP_001035812	Q9BQ89	F110A_HUMAN	hypothetical protein LOC83541	265						microtubule organizing center|spindle pole	protein binding				0						AGCGCGTTCCCTATGGCGTGT	0.687													20	34					0	0	0.012319	0	0
SIRPB2	284759	broad.mit.edu	37	20	1458921	1458921	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:1458921C>T	uc002wfg.2	-	3	1011	c.783G>A	c.(781-783)CTG>CTA	p.L261L	SIRPB2_uc002wfh.3_Silent_p.L163L|SIRPB2_uc010zpr.1_Silent_p.L123L	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	261	Extracellular (Potential).					integral to membrane					0						CTTTCACTTTCAGGCTGGTGC	0.398													27	45					0	0	0.004656	0	0
FAM113A	64773	broad.mit.edu	37	20	2816841	2816841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:2816841G>A	uc002wgz.1	-	7	1458	c.961C>T	c.(961-963)CCC>TCC	p.P321S	FAM113A_uc002whb.1_Missense_Mutation_p.P172S|FAM113A_uc002wha.1_Missense_Mutation_p.P172S|FAM113A_uc010zqa.1_Missense_Mutation_p.P168S|FAM113A_uc002whc.1_Missense_Mutation_p.P270S	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	321							hydrolase activity|protein binding			ovary(2)	2						aaaggcatgggaggaggcaaa	0.299													21	45					0	0	0.010504	0	0
ITPA	3704	broad.mit.edu	37	20	3202495	3202495	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:3202495C>T	uc002wid.2	+	7	562	c.420C>T	c.(418-420)ATC>ATT	p.I140I	ITPA_uc002wie.2_Silent_p.I123I|ITPA_uc002wif.2_RNA	NM_033453	NP_258412	Q9BY32	ITPA_HUMAN	inosine triphosphatase isoform a	140					nucleotide metabolic process	cytoplasm	metal ion binding|nucleoside-triphosphate diphosphatase activity|nucleotide binding			ovary(1)	1						AGGGCCGGATCGTGGCACCCA	0.592													15	23					0	0	0.007413	0	0
PAK7	57144	broad.mit.edu	37	20	9546702	9546702	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:9546702G>A	uc002wnl.2	-	6	1865	c.1320C>T	c.(1318-1320)GTC>GTT	p.V440V	PAK7_uc002wnk.2_Silent_p.V440V|PAK7_uc002wnj.2_Silent_p.V440V|PAK7_uc010gby.1_Silent_p.V440V	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	440	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTCCTGGGCTGACCACCAGCT	0.617													50	65					0	0	0.014410	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030640	10030640	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:10030640G>T	uc002wno.2	+	7	1816	c.1423G>T	c.(1423-1425)GAA>TAA	p.E475*	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Nonsense_Mutation_p.E475*|ANKRD5_uc010gbz.2_Nonsense_Mutation_p.E286*	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	475							calcium ion binding			ovary(1)|breast(1)	2						TCATCCCCCAGAACATCCCAT	0.453													66	83					2.32817e-41	2.4092e-41	0.014410	1	0
C20orf94	128710	broad.mit.edu	37	20	10602039	10602039	+	Silent	SNP	C	T	T	rs148003716	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:10602039C>T	uc010zre.1	+	7	663	c.483C>T	c.(481-483)CTC>CTT	p.L161L		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	161							protein binding				0						GTGCAAAGCTCCGGAGAAATG	0.403													13	36					0	0	0.002450	0	0
SEC23B	10483	broad.mit.edu	37	20	18505091	18505092	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:18505091_18505092CC>TT	uc002wqz.1	+	5	824_825	c.381_382CC>TT	c.(379-384)TCCCCT>TCTTCT	p.P128S	SEC23B_uc002wra.1_Missense_Mutation_p.P128S|SEC23B_uc002wrb.1_Missense_Mutation_p.P128S|SEC23B_uc010zsb.1_Intron|SEC23B_uc002wrc.1_Missense_Mutation_p.P128S	NM_006363	NP_006354	Q15437	SC23B_HUMAN	Sec23 homolog B	128					ER to Golgi vesicle-mediated transport|intracellular protein transport	COPII vesicle coat|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane	zinc ion binding			ovary(1)	1						GTGCTCAGTCCCCTCTGATCTT	0.426													44	90					0	0	0.004672	0	0
DTD1	92675	broad.mit.edu	37	20	18724816	18724816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:18724816G>A	uc002wrf.3	+	5	711	c.550G>A	c.(550-552)GAA>AAA	p.E184K		NM_080820	NP_543010	Q8TEA8	DTD1_HUMAN	D-tyrosyl-tRNA deacylase 1	184					D-amino acid catabolic process	cytoplasm	hydrolase activity, acting on ester bonds			ovary(2)	2						ATCAAGCAAGGAAAGAAACAC	0.478													15	24					0	0	0.003163	0	0
SLC24A3	57419	broad.mit.edu	37	20	19566105	19566105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:19566105G>A	uc002wrl.2	+	6	726	c.529G>A	c.(529-531)GAT>AAT	p.D177N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	177	Extracellular (Potential).|Alpha-1.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CACCAAAGGCGATGTGGGAGT	0.552													69	127					0	0	0.014410	0	0
C20orf26	26074	broad.mit.edu	37	20	20071504	20071504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:20071504G>A	uc002wru.2	+	7	659	c.583G>A	c.(583-585)GAT>AAT	p.D195N	C20orf26_uc010gcw.1_Missense_Mutation_p.D149N|C20orf26_uc010zse.1_Missense_Mutation_p.D195N|C20orf26_uc010zsf.1_Missense_Mutation_p.D195N	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	195										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGACCATGACGATCTCATGCC	0.333													58	132					0	0	0.014410	0	0
C20orf26	26074	broad.mit.edu	37	20	20209001	20209001	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:20209001C>T	uc002wru.2	+	18	2117	c.2041C>T	c.(2041-2043)CTA>TTA	p.L681L	C20orf26_uc010zse.1_Silent_p.L661L|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Silent_p.L37L	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	681										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AATTTCCTTCCTAGAGACATT	0.338													69	115					0	0	0.014410	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524084	24524084	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:24524084G>A	uc002wtw.1	+	2	984	c.351G>A	c.(349-351)GAG>GAA	p.E117E		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	117	Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCTTCATCGAGGACCGGTCGC	0.597													32	73					0	0	0.013726	0	0
XKR7	343702	broad.mit.edu	37	20	30585092	30585092	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:30585092G>A	uc002wxe.2	+	3	1746	c.1572G>A	c.(1570-1572)CGG>CGA	p.R524R		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	524						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CTGTCATCCGGATTGACTTGC	0.637													20	58					0	0	0.002780	0	0
C20orf70	140683	broad.mit.edu	37	20	31767457	31767457	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:31767457C>T	uc002wyo.1	+	7	764	c.693C>T	c.(691-693)GTC>GTT	p.V231V		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	231						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						ATGTGAATGTCATTCAGCAGG	0.552													48	65					0	0	0.014410	0	0
C20orf114	92747	broad.mit.edu	37	20	31889060	31889060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:31889060G>A	uc002wyw.1	+	9	930	c.769G>A	c.(769-771)GGA>AGA	p.G257R	C20orf114_uc002wyx.1_5'Flank	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	257						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						GGACTCACAGGGAAAGGTGAC	0.502													39	73					0	0	0.006999	0	0
ZNF341	84905	broad.mit.edu	37	20	32379014	32379014	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:32379014C>T	uc002wzy.2	+	15	2276	c.2256C>T	c.(2254-2256)GCC>GCT	p.A752A	ZNF341_uc002wzx.2_Silent_p.A745A|ZNF341_uc010geq.2_Silent_p.A662A|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Silent_p.A179A	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	752					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGAGGGCAGCCCCCCGCAGTT	0.677													18	30					0	0	0.008871	0	0
GHRH	2691	broad.mit.edu	37	20	35884814	35884814	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:35884814G>A	uc002xgr.2	-	2	171	c.171C>T	c.(169-171)ATC>ATT	p.I57I	GHRH_uc002xgs.2_Silent_p.I57I|GHRH_uc002xgt.2_Silent_p.I57I	NM_021081	NP_066567	P01286	SLIB_HUMAN	growth hormone releasing hormone preproprotein	57					activation of adenylate cyclase activity by G-protein signaling pathway|adenohypophysis development|growth hormone secretion|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of circadian sleep/wake cycle, REM sleep|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to food	extracellular space|terminal button	growth hormone-releasing hormone activity|growth hormone-releasing hormone receptor binding			ovary(1)	1		Myeloproliferative disorder(115;0.00878)				GCCTGCTCATGATGTCCTGGA	0.597													17	25					0	0	0.008871	0	0
KIAA1755	85449	broad.mit.edu	37	20	36846738	36846738	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:36846738G>A	uc002xhy.1	-	12	2859	c.2587C>T	c.(2587-2589)CGG>TGG	p.R863W	KIAA1755_uc002xhv.1_5'Flank|KIAA1755_uc002xhw.1_5'Flank|KIAA1755_uc002xhx.1_Missense_Mutation_p.R141W	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	863										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TGCAGGCACCGCCTTCCTTCC	0.577													26	25					0	0	0.003954	0	0
PTPRT	11122	broad.mit.edu	37	20	40733224	40733224	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:40733224G>A	uc002xkg.2	-	25	3709	c.3525C>T	c.(3523-3525)ATC>ATT	p.I1175I	PTPRT_uc010ggj.2_Silent_p.I1194I|PTPRT_uc010ggi.2_Silent_p.I378I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1175	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ATTCATCTTTGATTTGGCTGG	0.368													35	63					0	0	0.007835	0	0
L3MBTL	26013	broad.mit.edu	37	20	42168927	42168927	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:42168927C>T	uc010zwh.1	+	20	2290	c.2244C>T	c.(2242-2244)GTC>GTT	p.V748V	L3MBTL_uc002xkl.2_Silent_p.V680V|L3MBTL_uc002xkm.2_Silent_p.V680V|L3MBTL_uc010ggl.2_Silent_p.V685V|L3MBTL_uc002xkn.1_Silent_p.V439V|L3MBTL_uc002xko.2_Silent_p.V332V|L3MBTL_uc002xkp.2_Silent_p.V68V|SGK2_uc002xkq.1_5'UTR	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	680					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CCTCGACAGTCGCCAAGTGGA	0.612													19	51					0	0	0.014323	0	0
SLPI	6590	broad.mit.edu	37	20	43882316	43882316	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:43882316T>A	uc002xnm.1	-	2	166	c.144A>T	c.(142-144)AAA>AAT	p.K48N		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	48	Trypsin inhibitory domain.|WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGCACTCAGGTTTCTTGTATC	0.502													28	51					0	0	0.009535	0	0
CDH22	64405	broad.mit.edu	37	20	44879780	44879780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:44879780C>T	uc002xrm.2	-	1	555	c.154G>A	c.(154-156)GAC>AAC	p.D52N	CDH22_uc010ghk.1_Missense_Mutation_p.D52N	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	52	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				AGCGCGCCGTCCTGCCGAGCT	0.567													11	19					0	0	0.001855	0	0
NCOA3	8202	broad.mit.edu	37	20	46279928	46279928	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:46279928A>C	uc002xtk.2	+	20	4059	c.3854A>C	c.(3853-3855)AAT>ACT	p.N1285T	NCOA3_uc010ght.1_Missense_Mutation_p.N1276T|NCOA3_uc002xtl.2_Missense_Mutation_p.N1281T|NCOA3_uc002xtm.2_Missense_Mutation_p.N1280T|NCOA3_uc002xtn.2_Missense_Mutation_p.N1284T|NCOA3_uc010zyc.1_Missense_Mutation_p.N1080T	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1285	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						CCACCTCCTAATGTGACTGCT	0.323													27	45					0	0	0.003954	0	0
PREX1	57580	broad.mit.edu	37	20	47244112	47244112	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:47244112C>T	uc002xtw.1	-	39	4934	c.4911G>A	c.(4909-4911)AAG>AAA	p.K1637K	PREX1_uc002xtv.1_Silent_p.K934K	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	1637					actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			GCATCTGGTCCTTGACTCGCA	0.637													30	64					0	0	0.005524	0	0
BCAS1	8537	broad.mit.edu	37	20	52645135	52645135	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:52645135G>A	uc002xws.2	-	4	857	c.519C>T	c.(517-519)CTC>CTT	p.L173L	BCAS1_uc010zzb.1_Silent_p.L76L|BCAS1_uc010gim.2_Silent_p.L76L|BCAS1_uc002xwt.2_Silent_p.L173L|BCAS1_uc010gil.1_Silent_p.L173L|BCAS1_uc010zzc.1_Silent_p.L76L	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	173						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TCTCAGGTGGGAGAAGCGTGG	0.602													54	75					0	0	0.014410	0	0
PCK1	5105	broad.mit.edu	37	20	56140566	56140566	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:56140566C>T	uc002xyn.3	+	10	1738	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	PCK1_uc010zzm.1_Silent_p.F208F	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	525					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AAGGCAAATTCCTCTGGCCAG	0.557													26	54					0	0	0.005443	0	0
SYCP2	10388	broad.mit.edu	37	20	58467232	58467232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:58467232G>A	uc002yaz.2	-	23	2316	c.2177C>T	c.(2176-2178)TCG>TTG	p.S726L		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	726					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			TAGGAGAACCGATTTAAAAGT	0.338													39	38					0	0	0.004878	0	0
PPP1R3D	5509	broad.mit.edu	37	20	58514302	58514303	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:58514302_58514303GG>AA	uc002ybb.2	-	1	1050_1051	c.684_685CC>TT	c.(682-687)GGCCCC>GGTTCC	p.P229S	C20orf177_uc002yba.2_Intron|C20orf177_uc010zzx.1_5'Flank|C20orf177_uc002ybc.2_5'Flank	NM_006242	NP_006233	O95685	PPR3D_HUMAN	protein phosphatase 1, regulatory subunit 3D	229	CBM21.				glycogen metabolic process		protein binding|protein serine/threonine phosphatase activity				0	all_lung(29;0.00391)		BRCA - Breast invasive adenocarcinoma(7;5.12e-09)			GTGCCCTCGGGGCCTGCGGGCC	0.683													21	38					0	0	0.004672	0	0
COL9A3	1299	broad.mit.edu	37	20	61453960	61453961	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:61453960_61453961CC>TT	uc002ydm.2	+	10	498_499	c.495_496CC>TT	c.(493-498)CTCCCT>CTTTCT	p.P166S		NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	166	Triple-helical region 3 (COL3).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CAGGAGTCCTCCCTGAAGGCGC	0.614													26	55					0	0	0.004672	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981553	61981553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:61981553G>A	uc002yes.2	-	5	1388	c.1210C>T	c.(1210-1212)CCC>TCC	p.P404S	CHRNA4_uc002yet.1_Missense_Mutation_p.P228S|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.P333S|CHRNA4_uc002yev.1_Missense_Mutation_p.P228S|CHRNA4_uc010gkf.1_Missense_Mutation_p.P228S	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	404	Cytoplasmic (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GACGGTGAGGGCGGGTGCAGG	0.682													5	14					0	0	0.001984	0	0
PTK6	5753	broad.mit.edu	37	20	62168489	62168489	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:62168489C>A	uc002yfg.2	-	1	219	c.179G>T	c.(178-180)GGC>GTC	p.G60V	PTK6_uc011aay.1_5'UTR|PTK6_uc011aba.1_Missense_Mutation_p.G60V	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	60	SH3.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			GGGCACATAGCCCTGGGCCAC	0.687													8	15					1.12685e-05	1.14831e-05	0.004482	1	0
TPTE	7179	broad.mit.edu	37	21	10933861	10933861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:10933861C>T	uc002yip.1	-	17	1386	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G322R|TPTE_uc002yir.1_Missense_Mutation_p.G302R|TPTE_uc010gkv.1_Missense_Mutation_p.G202R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	340	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTGTGCCTCCTTTACAGTGA	0.328													50	339					0	0	0.014410	0	0
USP25	29761	broad.mit.edu	37	21	17196463	17196463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:17196463C>T	uc002yjy.1	+	11	1403	c.1186C>T	c.(1186-1188)CCC>TCC	p.P396S	USP25_uc011aby.1_Missense_Mutation_p.P396S|USP25_uc002yjz.1_Missense_Mutation_p.P396S|USP25_uc010gla.1_Intron	NM_013396	NP_037528	Q9UHP3	UBP25_HUMAN	ubiquitin specific peptidase 25	396					protein modification process|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)|liver(2)	5				Epithelial(23;7.55e-05)|all cancers(11;0.000429)|COAD - Colon adenocarcinoma(22;0.00543)|OV - Ovarian serous cystadenocarcinoma(11;0.00743)|Colorectal(24;0.0116)|Lung(58;0.0853)|LUSC - Lung squamous cell carcinoma(23;0.0889)		ATTAGAATTTCCCCAAGTTTT	0.318													14	27					0	0	0.002450	0	0
CXADR	1525	broad.mit.edu	37	21	18933054	18933054	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:18933054C>T	uc002yki.2	+	5	724	c.606C>T	c.(604-606)GCC>GCT	p.A202A	CXADR_uc002ykh.1_Intron|CXADR_uc010gld.1_Intron|CXADR_uc010gle.1_Intron|CXADR_uc002ykj.1_Silent_p.A175A	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	202	Extracellular (Potential).|Ig-like C2-type 2.				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		TAAAAAATGCCTCTTCTGAGT	0.378													40	59					0	0	0.006999	0	0
SYNJ1	8867	broad.mit.edu	37	21	34099161	34099161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:34099161G>A	uc002yqh.2	-	2	163	c.163C>T	c.(163-165)CCA>TCA	p.P55S	SYNJ1_uc011ads.1_Missense_Mutation_p.P16S|SYNJ1_uc002yqf.2_Missense_Mutation_p.P16S|SYNJ1_uc002yqg.2_Missense_Mutation_p.P16S|SYNJ1_uc002yqi.2_Missense_Mutation_p.P55S|uc002yqj.1_5'Flank|uc002yqk.2_5'Flank	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	16							inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						CTGAAAGGTGGGGGATCCAAT	0.483													37	68					0	0	0.003755	0	0
CLIC6	54102	broad.mit.edu	37	21	36043035	36043035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:36043035G>A	uc010gmt.1	+	1	1348	c.1348G>A	c.(1348-1350)GAG>AAG	p.E450K	CLIC6_uc002yuf.1_Missense_Mutation_p.E450K	NM_053277	NP_444507	Q96NY7	CLIC6_HUMAN	chloride intracellular channel 6	450						chloride channel complex|cytoplasm|plasma membrane	voltage-gated chloride channel activity			ovary(1)|central_nervous_system(1)	2						CCTGGGGCAGGAGCACGACAT	0.677													3	13					0	0	0.004672	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086598	39086598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:39086598G>A	uc011aej.1	-	3	915	c.862C>T	c.(862-864)CCT>TCT	p.P288S	KCNJ6_uc002ywo.2_Missense_Mutation_p.P288S	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	288	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	TCCCAGAAAGGACTCTGTTGG	0.478													43	66					0	0	0.010771	0	0
DSCAM	1826	broad.mit.edu	37	21	41424029	41424029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:41424029G>A	uc002yyq.1	-	30	5493	c.5041C>T	c.(5041-5043)CGC>TGC	p.R1681C	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1681	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ACCGTGGAGCGATCATCTACA	0.517													31	50					0	0	0.010818	0	0
DSCAM	1826	broad.mit.edu	37	21	42064773	42064773	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:42064773G>A	uc002yyq.1	-	3	923	c.471C>T	c.(469-471)GTC>GTT	p.V157V	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	157	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCCATGAGACGACAGTGATGT	0.517													28	58					0	0	0.006320	0	0
C2CD2	25966	broad.mit.edu	37	21	43327228	43327229	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:43327228_43327229GG>AA	uc002yzw.2	-	10	1432_1433	c.1190_1191CC>TT	c.(1189-1191)CCC>CTT	p.P397L	C2CD2_uc002yzt.2_Missense_Mutation_p.P13L|C2CD2_uc002yzu.2_Missense_Mutation_p.P229L|C2CD2_uc002yzv.2_Missense_Mutation_p.P242L|C2CD2_uc002yzx.1_Missense_Mutation_p.P242L	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	397						cytosol|extracellular region|nucleus				ovary(1)	1						CAGGAACAGGGGGAGGGATGGG	0.53													14	34					0	0	0.004672	0	0
SIK1	150094	broad.mit.edu	37	21	44837584	44837584	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:44837584G>A	uc002zdf.2	-	13	1942	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	605					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						CCAGCCCCTTGATTTTGTTCA	0.662													7	10					0	0	0.001984	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45971299	45971299	+	Missense_Mutation	SNP	T	C	C	rs233240	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:45971299T>C	uc002zfi.1	-	1	90	c.43A>G	c.(43-45)AAC>GAC	p.N15D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	15						keratin filament		p.N15D(1)		large_intestine(1)	1						TGCCAGGAGTTGGTGCAGGCG	0.597													4	119					0	0	0.009096	0	0
C21orf56	84221	broad.mit.edu	37	21	47581594	47581594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:47581594G>A	uc011afu.1	-	5	1784	c.722C>T	c.(721-723)TCC>TTC	p.S241F	C21orf56_uc002zii.2_Missense_Mutation_p.S87F	NM_001142854	NP_001136326	Q9H0A9	CU056_HUMAN	hypothetical protein LOC84221 isoform 1	241							protein binding			skin(1)	1	Breast(49;0.214)			Colorectal(79;0.241)		CTCGTCCACGGAGCCGTCCAG	0.721													5	11					0	0	0.000602	0	0
MCM3AP	8888	broad.mit.edu	37	21	47699945	47699946	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr21:47699945_47699946GG>AA	uc002zir.1	-	4	1664_1665	c.1628_1629CC>TT	c.(1627-1629)GCC>GTT	p.A543V		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	543					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TCCTCCCTGCGGCCTTGCCAAG	0.54													38	79					0	0	0.004672	0	0
MICAL3	57553	broad.mit.edu	37	22	18304888	18304888	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:18304888A>C	uc002zng.3	-	24	3709	c.3356T>G	c.(3355-3357)TTG>TGG	p.L1119W	MICAL3_uc011agl.1_Missense_Mutation_p.L1035W	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1119	Glu-rich.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TGGGCACGGCAAACGCAGCTC	0.617													26	48					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	22	18844929	18844929	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:18844929C>T	uc002zoe.2	+	4		c.2183C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		ACGTCCATCTCGCTCATCATC	0.572													8	35					0	0	0.004482	0	0
DGCR14	8220	broad.mit.edu	37	22	19124869	19124869	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:19124869G>A	uc002zou.2	-	8	1039	c.1002C>T	c.(1000-1002)CCC>CCT	p.P334P	DGCR14_uc002zot.2_Silent_p.P255P|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	334					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					TGTCCACGTAGGGCGTTTCCG	0.592													70	137					0	0	0.014410	0	0
HIRA	7290	broad.mit.edu	37	22	19344421	19344421	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:19344421G>A	uc002zpf.1	-	19	2608	c.2388C>T	c.(2386-2388)CTC>CTT	p.L796L	HIRA_uc011agx.1_Silent_p.L662L|HIRA_uc010grn.1_Intron|HIRA_uc010gro.1_Silent_p.L752L|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	796	Interaction with PAX3 (By similarity).|Interaction with histone H2B.|Interaction with histone H4.|WD 8.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					ACCAGACAGAGAGTGTGGCTG	0.642													20	37					0	0	0.007413	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843053	22843053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:22843053G>A	uc002zwc.1	-	4	1447	c.671C>T	c.(670-672)ACC>ATC	p.T224I	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	224					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GCTTAATGAGGTATGAACATT	0.368													46	81					0	0	0.014410	0	0
LOC96610	96610	broad.mit.edu	37	22	23162212	23162212	+	RNA	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:23162212C>T	uc011aim.1	+	283		c.12988C>T								Parts of antibodies, mostly variable regions.												0						GGGGATGAGGCTGACTATTAC	0.567													14	30					0	0	0.002450	0	0
IGLL1	3543	broad.mit.edu	37	22	23915530	23915531	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:23915530_23915531GG>AA	uc002zxd.2	-	3	682_683	c.564_565CC>TT	c.(562-567)TCCCGC>TCTTGC	p.R189C	IGLL1_uc002zxe.2_3'UTR	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	189	C region (By similarity to lambda light- chain).|Ig-like C1-type.				immune response	extracellular region|membrane					0						TAGCTTCTGCGGGACCTCCACT	0.629													37	60					0	0	0.004672	0	0
EMID1	129080	broad.mit.edu	37	22	29628340	29628340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:29628340C>T	uc003aen.2	+	8	841	c.766C>T	c.(766-768)CCT>TCT	p.P256S	EMID1_uc003aem.2_Missense_Mutation_p.P258S|EMID1_uc003aeo.2_Missense_Mutation_p.P258S|EMID1_uc003aep.2_Missense_Mutation_p.P258S	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	256	Collagen-like.					collagen					0						TCCTGGCCCCCCTGGGCCCCC	0.731													13	12					0	0	0.013537	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30950952	30950952	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:30950952G>A	uc003aig.1	-	4	1400	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	GAL3ST1_uc003aih.1_Silent_p.F420F|GAL3ST1_uc003aii.1_Silent_p.F420F|GAL3ST1_uc010gvz.1_Silent_p.F420F	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	420	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						ACCACCGCAGGAAATCGCGAA	0.687													13	18					0	0	0.003163	0	0
TCN2	6948	broad.mit.edu	37	22	31008905	31008905	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:31008905C>T	uc003aip.1	+	3	461	c.303C>T	c.(301-303)TCC>TCT	p.S101S	TCN2_uc003aiq.1_Silent_p.S97S|TCN2_uc003air.1_Silent_p.S101S	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	101					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GCAAGCCTTCCATGGGCCAGC	0.587													23	39					0	0	0.003954	0	0
OSBP2	23762	broad.mit.edu	37	22	31286931	31286931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:31286931G>A	uc003aiy.1	+	8	1944	c.1840G>A	c.(1840-1842)GAC>AAC	p.D614N	OSBP2_uc011ala.1_Missense_Mutation_p.D448N|OSBP2_uc010gwc.1_Missense_Mutation_p.D441N|OSBP2_uc011alb.1_Missense_Mutation_p.D565N|OSBP2_uc003aiz.1_Missense_Mutation_p.D613N|OSBP2_uc003aja.1_Missense_Mutation_p.D247N|OSBP2_uc011alc.1_Missense_Mutation_p.D356N|OSBP2_uc003ajb.2_Missense_Mutation_p.D159N|OSBP2_uc011ald.1_Missense_Mutation_p.D158N|OSBP2_uc010gwd.1_Missense_Mutation_p.D159N	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	614					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CCGCCTCGACGACATGGGCCT	0.667											OREG0026467	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	32					0	0	0.010504	0	0
LARGE	9215	broad.mit.edu	37	22	33777977	33777977	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:33777977G>A	uc003and.3	-	10	1638	c.1059C>T	c.(1057-1059)CCC>CCT	p.P353P	LARGE_uc011amd.1_Silent_p.P152P|LARGE_uc003ane.3_Silent_p.P353P|LARGE_uc010gwp.2_Silent_p.P353P|LARGE_uc011ame.1_Silent_p.P285P|LARGE_uc011amf.1_Silent_p.P353P|LARGE_uc010gwq.1_RNA	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase	353	Lumenal (Potential).				glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				TCCAGAAGCAGGGGAGCTGGT	0.522													37	69					0	0	0.004878	0	0
RASD2	23551	broad.mit.edu	37	22	35943045	35943045	+	Silent	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:35943045C>G	uc003anx.2	+	2	394	c.189C>G	c.(187-189)CGC>CGG	p.R63R	RASD2_uc003any.2_Silent_p.R63R	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	63					locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						ACAACATCCGCGGCGACATGT	0.597													22	41					0	0	0.012319	0	0
TST	7263	broad.mit.edu	37	22	37407110	37407110	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:37407110G>A	uc003aqg.2	-	2	1552	c.852C>T	c.(850-852)CCC>CCT	p.P284P	TST_uc003aqh.2_Silent_p.P284P	NM_003312	NP_003303	Q16762	THTR_HUMAN	thiosulfate sulfurtransferase	284	Rhodanese 2.				cyanate catabolic process|rRNA transport	mitochondrial matrix|plasma membrane	5S rRNA binding|thiosulfate sulfurtransferase activity				0						GGCTCTCTGGGGGGGCCCGGC	0.622													23	66					0	0	0.002780	0	0
SH3BP1	23616	broad.mit.edu	37	22	38046701	38046701	+	Missense_Mutation	SNP	C	T	T	rs146231662		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:38046701C>T	uc003ati.2	+	16	1678	c.1567C>T	c.(1567-1569)CCA>TCA	p.P523S	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_3'UTR|SH3BP1_uc003ath.1_Missense_Mutation_p.P523S|SH3BP1_uc003atj.1_Missense_Mutation_p.P459S|SH3BP1_uc003atk.1_Missense_Mutation_p.P437S|uc003atl.1_RNA	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	523					signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					agctccggccccagccTTGGC	0.423													14	40					0	0	0.004007	0	0
GCAT	23464	broad.mit.edu	37	22	38211288	38211288	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:38211288G>A	uc003atz.2	+	5	751	c.731_splice	c.e5+1	p.R244_splice	GCAT_uc003aua.1_Splice_Site_p.R270_splice	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor						biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CCACAGGACGGTGGGACCATG	0.622													15	20					0	0	0.006122	0	0
GCAT	23464	broad.mit.edu	37	22	38211686	38211686	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:38211686G>A	uc003atz.2	+	7	851	c.831G>A	c.(829-831)GGG>GGA	p.G277G	GCAT_uc003aua.1_Silent_p.G303G	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	277					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	ACACGACAGGGCCTGGGCCCC	0.657													73	70					0	0	0.014410	0	0
CACNA1I	8911	broad.mit.edu	37	22	39966888	39966888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:39966888G>A	uc003ayc.2	+	1	131	c.131G>A	c.(130-132)GGA>GAA	p.G44E	CACNA1I_uc003ayd.2_Missense_Mutation_p.G44E	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	44	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CCTCTGGATGGAGCTGATCCT	0.667													30	73					0	0	0.012213	0	0
TNRC6B	23112	broad.mit.edu	37	22	40661873	40661873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:40661873C>T	uc011aor.1	+	5	1850	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Missense_Mutation_p.P547S|TNRC6B_uc003ayo.2_Missense_Mutation_p.P351S	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	547					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CCACCCCCTCCCTGAAAACCA	0.522													20	39					0	0	0.007413	0	0
TTC38	55020	broad.mit.edu	37	22	46684422	46684422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:46684422C>T	uc003bhi.2	+	11	1095	c.1019C>T	c.(1018-1020)TCC>TTC	p.S340F	TTC38_uc011aqx.1_Missense_Mutation_p.S282F	NM_017931	NP_060401	Q5R3I4	TTC38_HUMAN	tetratricopeptide repeat domain 38	340							binding			ovary(1)	1						CTGATGGCATCCCTGGGTGCA	0.652													52	85					0	0	0.014410	0	0
BRD1	23774	broad.mit.edu	37	22	50167905	50167906	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:50167905_50167906GG>AA	uc003biv.2	-	12	3639_3640	c.3152_3153CC>TT	c.(3151-3153)ACC>ATT	p.T1051I	BRD1_uc011arf.1_Missense_Mutation_p.T777I|BRD1_uc011arg.1_Missense_Mutation_p.T1100I|BRD1_uc011arh.1_Missense_Mutation_p.T1051I|BRD1_uc003biu.3_Missense_Mutation_p.T1182I	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	1051					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TGAGGTCGCTGGTCGGCTCCCC	0.55													79	141					0	0	0.004672	0	0
SAPS2	9701	broad.mit.edu	37	22	50877130	50877130	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr22:50877130G>A	uc003blb.1	+	20	2489	c.2067G>A	c.(2065-2067)GGG>GGA	p.G689G	SAPS2_uc003bky.1_Silent_p.G662G|SAPS2_uc003bkz.1_Silent_p.G662G|SAPS2_uc003blc.2_Silent_p.G689G|SAPS2_uc003bla.1_Silent_p.G663G|SAPS2_uc003bld.1_Silent_p.G221G	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	689						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		ATGCACCTGGGGCAGGTGCCC	0.652													18	28					0	0	0.004990	0	0
CNTN6	27255	broad.mit.edu	37	3	1427326	1427326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:1427326C>T	uc003boz.2	+	20	2816	c.2549C>T	c.(2548-2550)TCC>TTC	p.S850F	CNTN6_uc011asj.1_Missense_Mutation_p.S778F|CNTN6_uc003bpa.2_Missense_Mutation_p.S850F	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	850	Fibronectin type-III 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TCCAAAGAATCCATGATAGGT	0.353													46	84					0	0	0.011902	0	0
SRGAP3	9901	broad.mit.edu	37	3	9027473	9027473	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:9027473G>A	uc003brf.1	-	22	3706	c.3030C>T	c.(3028-3030)GCC>GCT	p.A1010A	SRGAP3_uc003brg.1_Silent_p.A986A	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	1010					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GAAGGGGACTGGCGGGCTCCG	0.657			T	RAF1	pilocytic astrocytoma								25	38					0	0	0.004656	0	0
PPARG	5468	broad.mit.edu	37	3	12458497	12458497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:12458497G>A	uc003bwx.2	+	6	1205	c.1114G>A	c.(1114-1116)GGC>AGC	p.G372S	PPARG_uc003bwr.2_Missense_Mutation_p.G344S|PPARG_uc003bws.2_Missense_Mutation_p.G344S|PPARG_uc003bwu.2_Missense_Mutation_p.G344S|PPARG_uc003bwv.2_Intron|PPARG_uc010hea.1_RNA	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	372	Ligand-binding.				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CATATCCGAGGGCCAAGGCTT	0.453			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						62	97					0	0	0.014410	0	0
SLC6A6	6533	broad.mit.edu	37	3	14520675	14520675	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:14520675C>G	uc010heg.2	+	20	1824	c.1533C>G	c.(1531-1533)ATC>ATG	p.I511M	SLC6A6_uc003byq.2_Missense_Mutation_p.I511M|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	511	Helical; Name=11; (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						GGGCTGTGATCACTCCAGTTC	0.522													28	53					0	0	0.006320	0	0
C3orf20	84077	broad.mit.edu	37	3	14725882	14725882	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:14725882G>A	uc003byy.2	+	4	1022	c.618G>A	c.(616-618)TTG>TTA	p.L206L	C3orf20_uc003byz.2_Silent_p.L84L|C3orf20_uc003bza.2_Silent_p.L84L|C3orf20_uc003byx.1_Silent_p.L206L	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	206						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GCGGACAGTTGTGGAAAGGTG	0.498													25	48					0	0	0.007291	0	0
DAZL	1618	broad.mit.edu	37	3	16635245	16635245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:16635245C>T	uc003cbb.2	-	9	946	c.652G>A	c.(652-654)GAA>AAA	p.E218K	DAZL_uc003cba.2_Missense_Mutation_p.E238K	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	218					germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						GGATCAACTTCATTACAGTGG	0.338													16	22					0	0	0.006122	0	0
SATB1	6304	broad.mit.edu	37	3	18419810	18419810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:18419810G>A	uc003cbh.2	-	9	3162	c.1427C>T	c.(1426-1428)ACA>ATA	p.T476I	SATB1_uc003cbi.2_Missense_Mutation_p.T476I|SATB1_uc003cbj.2_Missense_Mutation_p.T476I	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	476					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						AATAGTAGCTGTTTTCACCTA	0.398													77	113					0	0	0.014410	0	0
KCNH8	131096	broad.mit.edu	37	3	19575403	19575403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:19575403C>T	uc003cbk.1	+	16	3331	c.3136C>T	c.(3136-3138)CTC>TTC	p.L1046F	KCNH8_uc010hex.1_Missense_Mutation_p.L507F	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	1046	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GCACCTAGTTCTCCCAAGCAG	0.493													41	67					0	0	0.006230	0	0
SGOL1	151648	broad.mit.edu	37	3	20216331	20216331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:20216331G>A	uc003cbs.2	-	6	879	c.692C>T	c.(691-693)CCA>CTA	p.P231L	SGOL1_uc003cbr.2_Intron|SGOL1_uc010hfa.2_Intron|SGOL1_uc003cbt.2_Intron|SGOL1_uc003cbu.2_Missense_Mutation_p.P231L|SGOL1_uc003cbv.2_Intron|SGOL1_uc003cbw.2_Intron|SGOL1_uc003cbx.2_Intron|SGOL1_uc003cby.2_Intron|SGOL1_uc003cbz.2_Missense_Mutation_p.P231L|SGOL1_uc003cca.2_Missense_Mutation_p.P231L|SGOL1_uc003ccb.2_Intron|SGOL1_uc003ccc.2_Intron	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	231					attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						GTTTACTAGTGGGTCTAAAAA	0.388													52	87					0	0	0.014410	0	0
THRB	7068	broad.mit.edu	37	3	24270443	24270443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:24270443G>A	uc003ccx.3	-	4	357	c.8C>T	c.(7-9)CCC>CTC	p.P3L	THRB_uc010hfe.2_Missense_Mutation_p.P3L|THRB_uc003ccy.3_Missense_Mutation_p.P3L|THRB_uc003ccz.3_5'UTR|THRB_uc003cdc.2_5'UTR|THRB_uc003cdd.2_5'UTR|THRB_uc003cde.1_5'UTR	NM_001128176	NP_001121648	P10828	THB_HUMAN	thyroid hormone receptor, beta	3	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription corepressor activity|zinc ion binding			skin(2)|pancreas(1)	3					Levothyroxine(DB00451)|Liothyronine(DB00279)	CATACTGTTGGGAGTCATAGG	0.313													28	66					0	0	0.004289	0	0
TGFBR2	7048	broad.mit.edu	37	3	30733068	30733069	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:30733068_30733069GG>AA	uc003ceo.2	+	7	2063_2064	c.1681_1682GG>AA	c.(1681-1683)GGC>AAC	p.G561N	TGFBR2_uc003cen.2_Missense_Mutation_p.G586N	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	561	Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						TCCTGAAGACGGCTCCCTAAAC	0.594													26	52					0	0	0.004672	0	0
GPD1L	23171	broad.mit.edu	37	3	32207311	32207311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:32207311C>T	uc003cew.2	+	8	1025	c.965C>T	c.(964-966)CCA>CTA	p.P322L		NM_015141	NP_055956	Q8N335	GPD1L_HUMAN	glycerol-3-phosphate dehydrogenase 1-like	322					glycerol-3-phosphate catabolic process	glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|NAD binding|protein homodimerization activity				0						ACTAGGTTTCCATTGTTTACT	0.408													17	34					0	0	0.008871	0	0
GOLGA4	2803	broad.mit.edu	37	3	37366816	37366816	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:37366816C>T	uc003cgv.2	+	14	3743	c.3439C>T	c.(3439-3441)CTG>TTG	p.L1147L	GOLGA4_uc010hgr.1_Silent_p.L708L|GOLGA4_uc003cgw.2_Silent_p.L1169L|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Silent_p.L1028L	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1147	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						GAATAAGTCTCTGAAGGAAAA	0.393													25	40					0	0	0.003330	0	0
SCN5A	6331	broad.mit.edu	37	3	38620983	38620983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:38620983C>T	uc003cio.2	-	18	3426	c.3232G>A	c.(3232-3234)GAA>AAA	p.E1078K	SCN5A_uc003cin.2_Missense_Mutation_p.E1077K|SCN5A_uc003cil.3_Missense_Mutation_p.E1078K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1078K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1077K|SCN5A_uc011ayr.1_Intron|SCN5A_uc010hhj.1_Missense_Mutation_p.E688K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1078					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGCTGGGATTCCTGCTGAAAA	0.647													16	24					0	0	0.004007	0	0
CCBP2	1238	broad.mit.edu	37	3	42906104	42906105	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:42906104_42906105GG>AC	uc003cme.2	+	3	289_290	c.110_111GG>AC	c.(109-111)AGG>AAC	p.R37N	CCBP2_uc003cmd.1_Missense_Mutation_p.R37N|CCBP2_uc003cmf.2_Missense_Mutation_p.R37N|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	37	Extracellular (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		ATGCTCTGCAGGAAGGATGCAG	0.515													44	75					0	0	0.004672	0	0
EXOSC7	23016	broad.mit.edu	37	3	45046817	45046817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:45046817G>A	uc003coi.2	+	6	555	c.526G>A	c.(526-528)GGG>AGG	p.G176R	EXOSC7_uc003coh.1_Missense_Mutation_p.G111R|EXOSC7_uc010his.1_Missense_Mutation_p.G95R|EXOSC7_uc003coj.2_Missense_Mutation_p.G176R	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7	176					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		GGATGAAGAGGGGTCGAAGGA	0.428													34	67					0	0	0.004289	0	0
CLEC3B	7123	broad.mit.edu	37	3	45077250	45077250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:45077250C>T	uc003cok.3	+	3	539	c.443C>T	c.(442-444)ACC>ATC	p.T148I	CLEC3B_uc003col.2_Missense_Mutation_p.T106I	NM_003278	NP_003269	P05452	TETN_HUMAN	C-type lectin domain family 3, member B	148	C-type lectin.				skeletal system development	extracellular space	protein binding|sugar binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00863)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGGACATGACCGGCGCCCGC	0.667													22	32					0	0	0.012319	0	0
TDGF1	6997	broad.mit.edu	37	3	46621317	46621317	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:46621317G>A	uc003cpv.2	+	4	592	c.312G>A	c.(310-312)CGG>CGA	p.R104R	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	104	EGF-like.				activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TCTACGGACGGAACTGTGAGC	0.547													57	92					0	0	0.014410	0	0
MYL3	4634	broad.mit.edu	37	3	46902187	46902187	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:46902187G>A	uc003cql.1	-	3	379	c.286C>T	c.(286-288)CTG>TTG	p.L96L		NM_000258	NP_000249	P08590	MYL3_HUMAN	slow skeletal ventricular myosin alkali light	96					cardiac muscle contraction|muscle filament sliding|positive regulation of ATPase activity|regulation of striated muscle contraction|regulation of the force of heart contraction|ventricular cardiac muscle tissue morphogenesis	A band|cytosol|I band|muscle myosin complex	actin monomer binding|calcium ion binding|myosin II heavy chain binding|structural constituent of muscle				0				BRCA - Breast invasive adenocarcinoma(193;0.00116)|KIRC - Kidney renal clear cell carcinoma(197;0.00557)|Kidney(197;0.0063)		GGCTTCCCCAGGACACGGAGC	0.632													17	47					0	0	0.004990	0	0
SMARCC1	6599	broad.mit.edu	37	3	47777561	47777561	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:47777561A>G	uc003crq.2	-	5	657	c.539T>C	c.(538-540)TTG>TCG	p.L180S	SMARCC1_uc011bbd.1_Missense_Mutation_p.L71S	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	180					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		TTTGTTAGCCAACTTCAGATC	0.348													25	43					0	0	0.006320	0	0
PLXNB1	5364	broad.mit.edu	37	3	48461395	48461395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:48461395C>T	uc003csw.2	-	11	2570	c.2300G>A	c.(2299-2301)GGA>GAA	p.G767E	PLXNB1_uc003csu.2_Intron|PLXNB1_uc003csx.2_Missense_Mutation_p.G767E|PLXNB1_uc010hjx.1_Intron	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	767	Extracellular (Potential).|Pro-rich.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGTTCCAGGTCCATTTTGGGG	0.652													14	18					0	0	0.003163	0	0
CCDC51	79714	broad.mit.edu	37	3	48474207	48474207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:48474207C>T	uc003csz.2	-	4	968	c.847G>A	c.(847-849)GGG>AGG	p.G283R	PLXNB1_uc003csx.2_5'Flank|CCDC51_uc003cta.2_Missense_Mutation_p.G174R|CCDC51_uc003ctb.2_Missense_Mutation_p.G174R|CCDC51_uc003ctc.2_Missense_Mutation_p.G283R|CCDC51_uc003ctd.2_Missense_Mutation_p.G174R	NM_024661	NP_078937	Q96ER9	CCD51_HUMAN	coiled-coil domain containing 51	283						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCCTGTGACCCAGAGTCCTGC	0.567													36	48					0	0	0.004878	0	0
WDR6	11180	broad.mit.edu	37	3	49049835	49049835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:49049835C>T	uc003cvj.2	+	2	1096	c.958C>T	c.(958-960)CTC>TTC	p.L320F	WDR6_uc011bbx.1_Missense_Mutation_p.L191F|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Missense_Mutation_p.L264F|WDR6_uc011bbz.1_Missense_Mutation_p.L239F	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	290	WD 4.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		AGGTGAGATCCTCCAGGCCTT	0.587													27	44					0	0	0.006320	0	0
LOC646498	646498	broad.mit.edu	37	3	49227403	49227403	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:49227403G>A	uc011bcj.1	-	1	25	c.19C>T	c.(19-21)CAG>TAG	p.Q7*		NM_001080528	NP_001073997			hypothetical LOC646498												0				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.00221)|KIRC - Kidney renal clear cell carcinoma(197;0.00247)		TTTGGGTTCTGGGAGAGGCAA	0.557													88	149					0	0	0.014410	0	0
BSN	8927	broad.mit.edu	37	3	49680262	49680263	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:49680262_49680263CC>TT	uc003cxe.3	+	3	1309_1310	c.1195_1196CC>TT	c.(1195-1197)CCC>TTC	p.P399F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	399					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TGGCCCAAAACCCTTGGGCTCA	0.639													17	58					0	0	0.004672	0	0
AMIGO3	386724	broad.mit.edu	37	3	49756440	49756440	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:49756440G>A	uc003cxj.2	-	1	799	c.459C>T	c.(457-459)TTC>TTT	p.F153F	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	153	Extracellular (Potential).|LRR 4.				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		GCAGGCCGTGGAAGGCATGCT	0.647											OREG0015572	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	65	86					0	0	0.014410	0	0
DOCK3	1795	broad.mit.edu	37	3	51398000	51398000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:51398000G>A	uc011bds.1	+	47	4966	c.4943G>A	c.(4942-4944)GGA>GAA	p.G1648E		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1648						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACCCCACGGGGAAATGTTCTG	0.527													10	16					0	0	0.010729	0	0
CACNA1D	776	broad.mit.edu	37	3	53699766	53699766	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:53699766C>T	uc003dgv.3	+	6	1009	c.846C>T	c.(844-846)ATC>ATT	p.I282I	CACNA1D_uc003dgu.3_Silent_p.I282I|CACNA1D_uc003dgy.3_Silent_p.I282I|CACNA1D_uc003dgw.3_5'Flank	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	282	Helical; Name=S5 of repeat I; (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TATTTGTAATCATAATCTATG	0.328													41	69					0	0	0.007835	0	0
CACNA1D	776	broad.mit.edu	37	3	53736796	53736796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:53736796C>T	uc003dgv.3	+	9	1512	c.1349C>T	c.(1348-1350)CCG>CTG	p.P450L	CACNA1D_uc003dgu.3_Missense_Mutation_p.P450L|CACNA1D_uc003dgy.3_Missense_Mutation_p.P450L|CACNA1D_uc003dgw.3_Missense_Mutation_p.P97L	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	450	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GACATCGATCCGGAGAATGAG	0.542													16	28					0	0	0.006122	0	0
IL17RD	54756	broad.mit.edu	37	3	57132039	57132039	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:57132039G>A	uc003dil.2	-	12	1781	c.1692C>T	c.(1690-1692)TTC>TTT	p.F564F	IL17RD_uc003dik.2_Silent_p.F540F|IL17RD_uc010hna.2_Silent_p.F420F|IL17RD_uc011bex.1_Silent_p.F420F	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	564	Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		GGAAGGGAACGAACTGCTTTT	0.527													16	22					0	0	0.004990	0	0
SLMAP	7871	broad.mit.edu	37	3	57894811	57894811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:57894811G>A	uc003dje.1	+	17	1787	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K	SLMAP_uc003djd.1_Missense_Mutation_p.E511K|SLMAP_uc003djf.1_Missense_Mutation_p.E490K|SLMAP_uc003djg.1_Missense_Mutation_p.E122K|SLMAP_uc011bez.1_Intron|SLMAP_uc011bfa.1_Missense_Mutation_p.E62K|SLMAP_uc003djh.2_Missense_Mutation_p.E21K|SLMAP_uc003dji.1_Missense_Mutation_p.E62K|SLMAP_uc011bfb.1_Missense_Mutation_p.E62K|SLMAP_uc011bfc.1_Missense_Mutation_p.E21K	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	528	Cytoplasmic (Potential).|Potential.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		AGCTCTTTTGGAAGAAGAAAG	0.328													35	85					0	0	0.006999	0	0
CADPS	8618	broad.mit.edu	37	3	62452067	62452067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:62452067C>T	uc003dll.2	-	25	3859	c.3499G>A	c.(3499-3501)GAC>AAC	p.D1167N	CADPS_uc003dlj.1_Missense_Mutation_p.D122N|CADPS_uc003dlk.1_Missense_Mutation_p.D615N|CADPS_uc003dlm.2_Missense_Mutation_p.D1128N|CADPS_uc003dln.2_Missense_Mutation_p.D1088N	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1167					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		ATTAGTTCGTCTATTTTTGAA	0.363													8	21					0	0	0.006214	0	0
FLJ10213	55096	broad.mit.edu	37	3	73111720	73111720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:73111720C>T	uc003dpj.2	+	1	911	c.488C>T	c.(487-489)CCT>CTT	p.P163L	PPP4R2_uc003dph.1_Intron|PPP4R2_uc003dpi.1_Intron	NM_018029	NP_060499	Q6P2I7	EBLN2_HUMAN	hypothetical protein LOC55096	163							protein binding				0		Prostate(10;0.0187)|Lung SC(41;0.236)		Epithelial(33;3.9e-05)|BRCA - Breast invasive adenocarcinoma(55;7.72e-05)|LUSC - Lung squamous cell carcinoma(21;0.00156)|Lung(16;0.00487)|KIRC - Kidney renal clear cell carcinoma(39;0.012)|Kidney(39;0.0139)		AGGGGTACTCCTTATGCTAGC	0.453													21	38					0	0	0.014323	0	0
ROBO2	6092	broad.mit.edu	37	3	77638082	77638082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:77638082C>T	uc003dpy.3	+	17	3324	c.2681C>T	c.(2680-2682)GCT>GTT	p.A894V	ROBO2_uc003dpz.2_Missense_Mutation_p.A898V|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.A898V|ROBO2_uc003dqa.2_Missense_Mutation_p.A21V	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	894	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AGTAATTATGCTGGTAAGTGA	0.393													29	46					0	0	0.007291	0	0
COL8A1	1295	broad.mit.edu	37	3	99514644	99514644	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:99514644G>A	uc003dtg.1	+	5	2144	c.1899G>A	c.(1897-1899)GTG>GTA	p.V633V	COL8A1_uc003dth.1_Silent_p.V633V|COL8A1_uc003dti.1_Silent_p.V634V	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	633	C1q.|Nonhelical region (NC1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						GGGCCCCAGTGAAGTTTAACA	0.547													17	32					0	0	0.004990	0	0
IMPG2	50939	broad.mit.edu	37	3	100964916	100964916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:100964916C>T	uc003duq.1	-	12	1476	c.1273G>A	c.(1273-1275)GAT>AAT	p.D425N	IMPG2_uc011bhe.1_Missense_Mutation_p.D288N	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	425	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						ATGGATTCATCTGCTGAGGGC	0.423													35	69					0	0	0.004878	0	0
NFKBIZ	64332	broad.mit.edu	37	3	101572057	101572057	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:101572057C>T	uc003dvp.2	+	5	802	c.687C>T	c.(685-687)CCC>CCT	p.P229P	NFKBIZ_uc003dvo.2_Silent_p.P129P|NFKBIZ_uc010hpo.2_Silent_p.P129P|NFKBIZ_uc003dvq.2_Silent_p.P229P	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						AATGCAGCCCCGTTTCCCTGA	0.527													40	81					0	0	0.005524	0	0
CD47	961	broad.mit.edu	37	3	107798844	107798844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:107798844G>A	uc003dwt.1	-	2	574	c.394C>T	c.(394-396)CGT>TGT	p.R132C	CD47_uc003dwu.1_Missense_Mutation_p.R132C|CD47_uc003dwv.1_Missense_Mutation_p.R132C|CD47_uc003dww.1_Missense_Mutation_p.R132C	NM_001777	NP_001768	Q08722	CD47_HUMAN	CD47 antigen isoform 1 precursor	132	Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|integrin-mediated signaling pathway|leukocyte migration|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to plasma membrane	protein binding|thrombospondin receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(3;0.0191)|Epithelial(53;0.118)			TTACCAACACGATATTTTAGC	0.413													39	80					0	0	0.004878	0	0
MYH15	22989	broad.mit.edu	37	3	108135721	108135721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:108135721C>T	uc003dxa.1	-	30	4003	c.3946G>A	c.(3946-3948)GAA>AAA	p.E1316K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1316	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTGCTCTTTTCCCTGGAAAGT	0.418													42	58					0	0	0.007835	0	0
MYH15	22989	broad.mit.edu	37	3	108220605	108220605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:108220605G>A	uc003dxa.1	-	4	410	c.353C>T	c.(352-354)TCC>TTC	p.S118F		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	118	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ATGCAGCACGGATGCCTCATT	0.468													41	54					0	0	0.005524	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111766811	111766811	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:111766811A>G	uc010hqb.2	+	5	748	c.578A>G	c.(577-579)TAC>TGC	p.Y193C	TMPRSS7_uc011bhr.1_Missense_Mutation_p.Y48C	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	319	Extracellular (Potential).|CUB 1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						AGCATCTTGTACAGGTACGAT	0.438													25	44					0	0	0.006320	0	0
SIDT1	54847	broad.mit.edu	37	3	113285295	113285295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:113285295G>A	uc003eak.2	+	2	902	c.251G>A	c.(250-252)AGT>AAT	p.S84N	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.S84N|SIDT1_uc011big.1_5'UTR	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	84	Extracellular (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						TATGTGAACAGTTCCTCTGAG	0.433													55	87					0	0	0.014410	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119099820	119099820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:119099820C>T	uc003ecj.3	+	4	950	c.418C>T	c.(418-420)CCA>TCA	p.P140S		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	140	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						GGAGCTTCCTCCATCCCACTA	0.493													26	35					0	0	0.005443	0	0
STXBP5L	9515	broad.mit.edu	37	3	121100199	121100199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:121100199G>A	uc003eec.3	+	23	2619	c.2479G>A	c.(2479-2481)GAT>AAT	p.D827N	STXBP5L_uc011bji.1_Missense_Mutation_p.D803N	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	827					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TATTGACAAAGATTCTAAAGA	0.363													68	92					0	0	0.014410	0	0
FBXO40	51725	broad.mit.edu	37	3	121342087	121342087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:121342087G>A	uc003eeg.2	+	3	2021	c.1811G>A	c.(1810-1812)AGG>AAG	p.R604K		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	604	F-box.				muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		GTGCTGATGAGGAATATCTGT	0.498													37	64					0	0	0.004878	0	0
SEMA5B	54437	broad.mit.edu	37	3	122680022	122680022	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:122680022C>T	uc003efz.1	-	2	393	c.89G>A	c.(88-90)TGG>TAG	p.W30*	SEMA5B_uc011bju.1_Intron|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Nonsense_Mutation_p.W30*|SEMA5B_uc010hro.1_Intron|SEMA5B_uc010hrp.1_Intron	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	30	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CCCTACTGTCCATCCACACCT	0.627													22	38					0	0	0.014323	0	0
KALRN	8997	broad.mit.edu	37	3	124149592	124149592	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:124149592G>A	uc003ehg.2	+	16	2920	c.2793G>A	c.(2791-2793)CGG>CGA	p.R931R	KALRN_uc010hrv.1_Silent_p.R931R|KALRN_uc003ehf.1_Silent_p.R931R|KALRN_uc011bjy.1_Silent_p.R931R|KALRN_uc003ehh.1_Silent_p.R277R	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	931	Spectrin 4.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGCTGCAGCGGGAGCACGAGC	0.567													12	29					0	0	0.013537	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125876337	125876337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:125876337C>T	uc003eim.1	-	4	567	c.377G>A	c.(376-378)GGA>GAA	p.G126E	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Intron|ALDH1L1_uc003eio.2_5'Flank|ALDH1L1_uc010hsf.1_Missense_Mutation_p.G152E|ALDH1L1_uc003eip.1_Missense_Mutation_p.G35E|ALDH1L1_uc011bkj.1_5'UTR	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	126	GART.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTTCTTATCTCCGTGAATGAG	0.592													38	54					0	0	0.010771	0	0
KBTBD12	166348	broad.mit.edu	37	3	127703092	127703092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:127703092G>A	uc010hsr.2	+	5	1846	c.1843G>A	c.(1843-1845)GAT>AAT	p.D615N	KBTBD12_uc003ejy.3_Missense_Mutation_p.D222N|KBTBD12_uc010hsq.2_RNA|KBTBD12_uc003eka.3_Missense_Mutation_p.D190N	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	615										ovary(1)	1						CCCGCCTTCAGATTTGGTGGA	0.542													32	44					0	0	0.010818	0	0
RUVBL1	8607	broad.mit.edu	37	3	127817732	127817732	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:127817732T>C	uc003ekh.2	-	7	914	c.810A>G	c.(808-810)GAA>GAG	p.E270E	RUVBL1_uc003eke.2_Silent_p.E11E|RUVBL1_uc003ekf.2_Silent_p.E210E|RUVBL1_uc010hss.2_Silent_p.E270E	NM_003707	NP_003698	Q9Y265	RUVB1_HUMAN	RuvB-like 1	270					cell division|CenH3-containing nucleosome assembly at centromere|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|mitosis|regulation of growth|regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription, DNA-dependent	Golgi apparatus|Ino80 complex|membrane|microtubule organizing center|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|DNA helicase activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.181)		TACCTGTGATTTCTGTCTTCT	0.542													36	57					0	0	0.006999	0	0
EEFSEC	60678	broad.mit.edu	37	3	127983479	127983479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:127983479C>T	uc003eki.2	+	4	679	c.641C>T	c.(640-642)TCC>TTC	p.S214F	EEFSEC_uc003ekj.2_Intron	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	214						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						TCCCAGATTTCCATCCCAACG	0.557													65	95					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	3	129134234	129134234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:129134234G>A	uc003emg.2	-	4	855	c.692C>T	c.(691-693)CCT>CTT	p.P231L		NM_207307	NP_997190			hypothetical protein LOC90288																		GTTCTTCAGAGGGACTCCGAC	0.502													11	19					0	0	0.008291	0	0
LOC729375	729375	broad.mit.edu	37	3	129818045	129818045	+	RNA	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:129818045T>C	uc003ene.2	-	3		c.466A>G			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						CATATAAAAATTCTTCCCACG	0.408													20	33					0	0	0.008871	0	0
COL29A1	256076	broad.mit.edu	37	3	130095608	130095608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:130095608C>T	uc010htj.1	+	3	1090	c.596C>T	c.(595-597)TCC>TTC	p.S199F	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	199	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						AGCACATTTTCCCAAAACATG	0.483													14	28					0	0	0.003163	0	0
COL6A6	131873	broad.mit.edu	37	3	130311923	130311923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:130311923G>A	uc010htl.2	+	15	4421	c.4390G>A	c.(4390-4392)GGA>AGA	p.G1464R	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1464	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGGGGAAAATGGAATTGACGG	0.368													89	175					0	0	0.014410	0	0
TMEM108	66000	broad.mit.edu	37	3	133114782	133114782	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:133114782C>T	uc003eph.2	+	6	1954	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F	TMEM108_uc003epi.2_Silent_p.F560F|TMEM108_uc003epk.2_Silent_p.F90F|TMEM108_uc003epm.2_Silent_p.F511F	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	560	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(2)	4						TTAACCCCTTCTGTCAAGAAA	0.478													25	50					0	0	0.004656	0	0
TF	7018	broad.mit.edu	37	3	133472515	133472515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:133472515C>T	uc003epu.1	+	8	2021	c.293C>T	c.(292-294)CCT>CTT	p.P98L	TF_uc011bls.1_Missense_Mutation_p.P98L|TF_uc011blt.1_5'UTR|TF_uc003epw.1_Intron|TF_uc003epv.1_Missense_Mutation_p.P98L	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	98	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	AACCTGAAGCCTGTGGTGGCA	0.498													39	72					0	0	0.011902	0	0
C3orf36	80111	broad.mit.edu	37	3	133647198	133647198	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:133647198C>T	uc003epz.1	-	1	1459	c.450G>A	c.(448-450)CTG>CTA	p.L150L		NM_025041	NP_079317	Q3SXR2	CC036_HUMAN	hypothetical protein LOC80111	150										ovary(1)	1						TTCTGACTCTCAGTTTCACCC	0.542													23	45					0	0	0.003330	0	0
AMOTL2	51421	broad.mit.edu	37	3	134086550	134086550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:134086550G>A	uc003eqf.2	-	3	1121	c.1004C>T	c.(1003-1005)CCA>CTA	p.P335L	AMOTL2_uc003eqg.1_Missense_Mutation_p.P277L|AMOTL2_uc003eqh.1_Missense_Mutation_p.P277L|AMOTL2_uc003eqe.1_5'Flank	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	277										large_intestine(1)	1						GAGAGCAGCTGGATGTGGGGG	0.667													16	20					0	0	0.004007	0	0
MSL2	55167	broad.mit.edu	37	3	135870726	135870726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:135870726G>A	uc003eqx.1	-	2	1730	c.997C>T	c.(997-999)CCG>TCG	p.P333S	MSL2_uc011bmb.1_Missense_Mutation_p.P259S	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	333					histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						GCTATCTTCGGAGTTGCTGCT	0.433													44	66					0	0	0.013114	0	0
SR140	23350	broad.mit.edu	37	3	142740370	142740370	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:142740370T>G	uc003evh.1	+	10	924	c.825T>G	c.(823-825)AAT>AAG	p.N275K	SR140_uc003evi.1_5'UTR|SR140_uc011bnj.1_Missense_Mutation_p.N275K|SR140_uc003evj.1_RNA|SR140_uc003evk.1_Missense_Mutation_p.N274K	NM_001080415	NP_001073884	O15042	SR140_HUMAN	U2-associated SR140 protein	275	RRM.				RNA processing	nucleus	nucleotide binding|RNA binding				0						GCACTACTAATTTATACCTTG	0.328													22	33					0	0	0.005443	0	0
TM4SF4	7104	broad.mit.edu	37	3	149192738	149192738	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:149192738A>G	uc003exd.1	+	1	305	c.74A>G	c.(73-75)AAC>AGC	p.N25S		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	25	Helical; (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TTCCTGGCTAACATCCTGTTA	0.507													13	32					0	0	0.013537	0	0
MED12L	116931	broad.mit.edu	37	3	151073808	151073808	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:151073808T>A	uc003eyp.2	+	17	2575	c.2537T>A	c.(2536-2538)CTA>CAA	p.L846Q	MED12L_uc011bnz.1_Missense_Mutation_p.L706Q|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.L10Q	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	846					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATCAACGGACTAATTGACTTC	0.423													35	49					0	0	0.004289	0	0
AADAC	13	broad.mit.edu	37	3	151545890	151545890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:151545890C>T	uc003eze.2	+	5	1220	c.1130C>T	c.(1129-1131)TCA>TTA	p.S377L		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	377	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			GGAGCATTTTCATTTCTGGGA	0.363													31	63					0	0	0.010818	0	0
SGEF	26084	broad.mit.edu	37	3	153958278	153958278	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:153958278G>T	uc011bog.1	+	12	2421	c.2210G>T	c.(2209-2211)AGA>ATA	p.R737I	SGEF_uc011boh.1_Missense_Mutation_p.R737I|SGEF_uc011boi.1_Missense_Mutation_p.R5I	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	737	PH.				regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CTCTATTCAAGACAGAGCTCT	0.428													4	17					0.00909568	0.00921273	0.009096	1	0
OTOL1	131149	broad.mit.edu	37	3	161214749	161214749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:161214749C>T	uc011bpb.1	+	1	154	c.154C>T	c.(154-156)CCA>TCA	p.P52S		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	52						collagen					0						TGGCCCACCTCCAGAAGAAGA	0.463													29	50					0	0	0.006320	0	0
OTOL1	131149	broad.mit.edu	37	3	161220831	161220831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:161220831G>A	uc011bpb.1	+	4	535	c.535G>A	c.(535-537)GGA>AGA	p.G179R		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	179						collagen					0						TGGCCCTAAGGGAGATAAAGG	0.413													3	4					0	0	0.009096	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906736	164906736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:164906736C>T	uc003fej.3	-	2	2327	c.1883G>A	c.(1882-1884)GGA>GAA	p.G628E	SLITRK3_uc003fek.2_Missense_Mutation_p.G628E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	628	Extracellular (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GTGAGAATCTCCAGGCTGGGC	0.547										HNSCC(40;0.11)			11	21					0	0	0.008291	0	0
BCHE	590	broad.mit.edu	37	3	165547927	165547927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:165547927C>T	uc003fem.3	-	2	1055	c.895G>A	c.(895-897)GAA>AAA	p.E299K	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	299					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	AGAAGAATTTCTTGGGGATCT	0.408													27	52					0	0	0.007291	0	0
SERPINI2	5276	broad.mit.edu	37	3	167184988	167184988	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:167184988G>A	uc003fer.1	-	2	391	c.333C>T	c.(331-333)CTC>CTT	p.L111L	SERPINI2_uc003fes.1_Silent_p.L121L|SERPINI2_uc003fet.1_Silent_p.L111L	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	111					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CTTGAAGGTAGAGGGCATTGG	0.348													32	46					0	0	0.009535	0	0
MECOM	2122	broad.mit.edu	37	3	168818731	168818731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:168818731G>A	uc003ffi.3	-	11	2496	c.2227C>T	c.(2227-2229)CCA>TCA	p.P743S	MECOM_uc010hwk.1_Missense_Mutation_p.P757S|MECOM_uc003ffj.3_Missense_Mutation_p.P808S|MECOM_uc011bpi.1_Missense_Mutation_p.P735S|MECOM_uc003ffn.3_Missense_Mutation_p.P743S|MECOM_uc003ffk.2_Missense_Mutation_p.P734S|MECOM_uc003ffl.2_Missense_Mutation_p.P894S|MECOM_uc011bpj.1_Missense_Mutation_p.P931S|MECOM_uc011bpk.1_Missense_Mutation_p.P733S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	743	C2H2-type 8.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GCAGACCTTGGAAAAATCTTG	0.388													19	51					0	0	0.002780	0	0
SLC7A14	57709	broad.mit.edu	37	3	170198277	170198277	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:170198277G>A	uc003fgz.2	-	7	2110	c.1794C>T	c.(1792-1794)ATC>ATT	p.I598I	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	598	Helical; (Potential).					integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			CAACCAGAAGGATGGCCCACC	0.537													25	35					0	0	0.003954	0	0
SLC2A2	6514	broad.mit.edu	37	3	170725020	170725020	+	Missense_Mutation	SNP	C	T	T	rs144822218		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:170725020C>T	uc003fhe.1	-	5	838	c.529G>A	c.(529-531)GGT>AGT	p.G177S	SLC2A2_uc003fhf.1_Missense_Mutation_p.G4S|SLC2A2_uc011bpu.1_Missense_Mutation_p.G50S	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	177	Helical; Name=4; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GCAATTTCACCGATATACATA	0.428													6	31					0	0	0.001168	0	0
ECE2	9718	broad.mit.edu	37	3	184008046	184008046	+	Missense_Mutation	SNP	G	A	A	rs142884324	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:184008046G>A	uc003fni.3	+	14	1947	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	ECE2_uc011brh.1_Missense_Mutation_p.E490K|ECE2_uc003fnl.3_Missense_Mutation_p.E565K|ECE2_uc003fnm.3_Missense_Mutation_p.E519K|ECE2_uc003fnk.3_Missense_Mutation_p.E490K|ECE2_uc011bri.1_Missense_Mutation_p.E552K|ECE2_uc010hxv.2_Missense_Mutation_p.E281K	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	637	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCCACAGTACGAAATTTCTGA	0.383													12	14					0	0	0.013537	0	0
MAP3K13	9175	broad.mit.edu	37	3	185190820	185190821	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:185190820_185190821CC>TT	uc010hyf.2	+	12	1967_1968	c.1701_1702CC>TT	c.(1699-1704)TCCCCT>TCTTCT	p.P568S	MAP3K13_uc011brt.1_Missense_Mutation_p.P361S|MAP3K13_uc011bru.1_Missense_Mutation_p.P424S|MAP3K13_uc003fpi.2_Missense_Mutation_p.P568S|MAP3K13_uc010hyg.2_Missense_Mutation_p.P258S	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	568					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CCACTGCATCCCCTTTGTCCGG	0.52													75	137					0	0	0.004672	0	0
SENP2	59343	broad.mit.edu	37	3	185307940	185307941	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:185307940_185307941CC>TT	uc003fpn.2	+	2	311_312	c.140_141CC>TT	c.(139-141)GCC>GTT	p.A47V	SENP2_uc011brv.1_Missense_Mutation_p.A37V|SENP2_uc011brw.1_5'UTR	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	47	Nuclear localization signal.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GAAATACCAGCCAAAAGACCAA	0.252													12	27					0	0	0.004672	0	0
ADIPOQ	9370	broad.mit.edu	37	3	186571030	186571030	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:186571030C>T	uc003fra.2	+	2	267	c.183C>T	c.(181-183)ACC>ACT	p.T61T	ADIPOQ_uc010hyy.2_Silent_p.T61T	NM_004797	NP_004788	Q15848	ADIPO_HUMAN	adiponectin precursor	61	Collagen-like.				brown fat cell differentiation|cellular response to drug|cellular response to insulin stimulus|detection of oxidative stress|fatty acid beta-oxidation|generation of precursor metabolites and energy|glucose homeostasis|glucose metabolic process|low-density lipoprotein particle clearance|negative regulation of blood pressure|negative regulation of DNA biosynthetic process|negative regulation of ERK1 and ERK2 cascade|negative regulation of eukaryotic cell surface binding|negative regulation of fat cell differentiation|negative regulation of gluconeogenesis|negative regulation of granulocyte differentiation|negative regulation of heterotypic cell-cell adhesion|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of intracellular protein transport|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|negative regulation of macrophage differentiation|negative regulation of MAP kinase activity|negative regulation of phagocytosis|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein autophosphorylation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|negative regulation of synaptic transmission|negative regulation of transcription, DNA-dependent|negative regulation of tumor necrosis factor production|negative regulation of tumor necrosis factor-mediated signaling pathway|positive regulation of cAMP-dependent protein kinase activity|positive regulation of cholesterol efflux|positive regulation of fatty acid metabolic process|positive regulation of glucose import|positive regulation of glycogen (starch) synthase activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 production|positive regulation of metanephric glomerular visceral epithelial cell development|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myeloid cell apoptosis|positive regulation of protein kinase A signaling cascade|positive regulation of renal albumin absorption|protein homooligomerization|protein localization in plasma membrane|response to glucose stimulus|response to tumor necrosis factor	collagen|endoplasmic reticulum|extracellular space	cytokine activity|eukaryotic cell surface binding|hormone activity|protein homodimerization activity			ovary(1)	1	all_cancers(143;1.2e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.47e-19)	GBM - Glioblastoma multiforme(93;0.0776)		GAGATGGCACCCCTGGTGAGA	0.557													12	10					0	0	0.010729	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186760986	186760987	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:186760986_186760987GG>AA	uc003frb.2	+	4	927_928	c.495_496GG>AA	c.(493-498)TGGGAG>TGAAAG	p.165_166WE>*K	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Nonsense_Mutation_p.165_166WE>*K	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	165_166	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		CCTCTGAATGGGAGGGTTATCT	0.554													32	76					0	0	0.004672	0	0
TP63	8626	broad.mit.edu	37	3	189608669	189608669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:189608669G>A	uc003fry.2	+	13	1833	c.1744G>A	c.(1744-1746)GAT>AAT	p.D582N	TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Missense_Mutation_p.D488N|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Missense_Mutation_p.D403N	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	582	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TTACTCCATGGATGTAAGTAA	0.408									Hay-Wells_syndrome	HNSCC(45;0.13)			20	31					0	0	0.010504	0	0
LRRC15	131578	broad.mit.edu	37	3	194081252	194081252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:194081252C>T	uc003ftu.2	-	2	607	c.521G>A	c.(520-522)GGA>GAA	p.G174E	LRRC15_uc003ftt.2_Missense_Mutation_p.G180E	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	174	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		CTTCGTGAGTCCTACCAGGTG	0.592													76	155					0	0	0.014410	0	0
ZNF718	255403	broad.mit.edu	37	4	155870	155870	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:155870C>T	uc003fzt.3	+	8	1528	c.1395C>T	c.(1393-1395)AAC>AAT	p.N465N	ZNF595_uc003fzu.1_Intron|ZNF718_uc010iaz.2_RNA|ZNF718_uc003fzw.3_3'UTR	NM_001039127	NP_001034216	Q3SXZ3	ZN718_HUMAN	zinc finger protein 718	465	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0681)|Epithelial(2;0.0838)|all cancers(2;0.135)|LUSC - Lung squamous cell carcinoma(95;0.18)		AGTACTCCAACCTTCCTCAAC	0.348													8	14					0	0	0.003080	0	0
ZNF721	170960	broad.mit.edu	37	4	435898	435898	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:435898A>C	uc003gag.2	-	3	3049	c.2358T>G	c.(2356-2358)TGT>TGG	p.C786W	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.C818W|ZNF721_uc010ibe.2_Missense_Mutation_p.C774W	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	786						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TGACTTTGCCACATTCCTTAC	0.358													14	27					0	0	0.002450	0	0
ZNF721	170960	broad.mit.edu	37	4	437664	437664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:437664G>A	uc003gag.2	-	3	1283	c.592C>T	c.(592-594)CGT>TGT	p.R198C	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.R230C|ZNF721_uc010ibe.2_Missense_Mutation_p.R186C	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	198						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCTCTGTCACGATCTTCACCT	0.373													20	47					0	0	0.008871	0	0
DGKQ	1609	broad.mit.edu	37	4	960963	960963	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:960963G>A	uc003gbw.2	-	9	1248	c.1174C>T	c.(1174-1176)CTG>TTG	p.L392L	DGKQ_uc010ibn.2_Silent_p.L392L	NM_001347	NP_001338	P52824	DGKQ_HUMAN	diacylglycerol kinase, theta	392					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|platelet activation|protein kinase C signaling cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to ATP|thrombin receptor signaling pathway	cytoskeleton|cytosol|nuclear speck|plasma membrane	activating transcription factor binding|ATP binding|diacylglycerol kinase activity|kinase binding|metal ion binding|phospholipase binding			kidney(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GCCCGCGGCAGAGCCCGGATG	0.716													4	11					0	0	0.000602	0	0
FGFRL1	53834	broad.mit.edu	37	4	1018889	1018889	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:1018889C>T	uc003gce.2	+	7	1430	c.1269C>T	c.(1267-1269)GCC>GCT	p.A423A	FGFRL1_uc003gcf.2_Silent_p.A423A|FGFRL1_uc003gcg.2_Silent_p.A423A|FGFRL1_uc010ibo.2_Silent_p.A423A	NM_021923	NP_068742	Q8N441	FGRL1_HUMAN	fibroblast growth factor receptor-like 1	423	Cytoplasmic (Potential).				regulation of cell growth	integral to membrane|plasma membrane	fibroblast growth factor receptor activity|heparin binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CGGGGACGGCCCGCGACCGCA	0.741													6	15					0	0	0.001168	0	0
SORCS2	57537	broad.mit.edu	37	4	7666085	7666085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:7666085C>T	uc003gkb.3	+	7	958	c.958C>T	c.(958-960)CGG>TGG	p.R320W	SORCS2_uc011bwi.1_Missense_Mutation_p.R148W	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	320	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						TGTAGATTTTCGGTACGTCAC	0.597													4	12					0	0	0.009096	0	0
HTRA3	94031	broad.mit.edu	37	4	8293173	8293174	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:8293173_8293174CC>TT	uc003gla.2	+	4	989_990	c.785_786CC>TT	c.(784-786)CCC>CTT	p.P262L	HTRA3_uc003gkz.2_Missense_Mutation_p.P262L	NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	262	Serine protease.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						ATCGGCAGTCCCTTCGCCCTAC	0.614													26	37					0	0	0.004672	0	0
ACOX3	8310	broad.mit.edu	37	4	8394159	8394159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:8394159G>A	uc010idk.2	-	11	1346	c.1201C>T	c.(1201-1203)CAC>TAC	p.H401Y	ACOX3_uc003glc.3_Missense_Mutation_p.H401Y|ACOX3_uc003gld.3_Missense_Mutation_p.H401Y|ACOX3_uc003gle.1_Missense_Mutation_p.H306Y	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	401					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						GCCAGGGCGTGGATCTCACGT	0.552													77	156					0	0	0.014410	0	0
DRD5	1816	broad.mit.edu	37	4	9783859	9783859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:9783859G>A	uc003gmb.3	+	1	602	c.206G>A	c.(205-207)CGC>CAC	p.R69H		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	69	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GTGCGGAGCCGCCACCTGCGC	0.647													12	24					0	0	0.010729	0	0
DRD5	1816	broad.mit.edu	37	4	9784432	9784432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:9784432C>T	uc003gmb.3	+	1	1175	c.779C>T	c.(778-780)TCC>TTC	p.S260F		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	260	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CGCAGGATTTCCTCCCTGGAG	0.627													19	33					0	0	0.006122	0	0
SLIT2	9353	broad.mit.edu	37	4	20568996	20568996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:20568996C>T	uc003gpr.1	+	27	3041	c.2837C>T	c.(2836-2838)CCA>CTA	p.P946L	SLIT2_uc003gps.1_Missense_Mutation_p.P938L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	946	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGCACCTGTCCATATGGTTTC	0.383													41	102					0	0	0.010771	0	0
SLC34A2	10568	broad.mit.edu	37	4	25669591	25669592	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:25669591_25669592GG>AA	uc003grr.2	+	6	694_695	c.613_614GG>AA	c.(613-615)GGA>AAA	p.G205K	SLC34A2_uc003grs.2_Missense_Mutation_p.G204K|SLC34A2_uc010iev.2_Missense_Mutation_p.G204K	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	205	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				CATGCAGGTGGGAGATCGGAGT	0.51													12	32					0	0	0.004672	0	0
SLC34A2	10568	broad.mit.edu	37	4	25678050	25678050	+	Silent	SNP	G	A	A	rs150425667		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:25678050G>A	uc003grr.2	+	13	1833	c.1752G>A	c.(1750-1752)CCG>CCA	p.P584P	SLC34A2_uc003grs.2_Silent_p.P583P|SLC34A2_uc010iev.2_Silent_p.P583P	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	584	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				GCGTCCTGCCGAAGAAACTCC	0.612													59	111					0	0	0.014410	0	0
TMEM156	80008	broad.mit.edu	37	4	38987956	38987956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:38987956C>T	uc003gto.2	-	5	931	c.823G>A	c.(823-825)GCA>ACA	p.A275T	TMEM156_uc010ifj.2_Missense_Mutation_p.E275K	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	275	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CAGAACTTACCTGAAAGAACC	0.403													18	39					0	0	0.007413	0	0
LIMCH1	22998	broad.mit.edu	37	4	41683002	41683002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:41683002C>T	uc003gvu.3	+	20	2545	c.2491C>T	c.(2491-2493)CCA>TCA	p.P831S	LIMCH1_uc003gvv.3_Missense_Mutation_p.P831S|LIMCH1_uc003gvw.3_Missense_Mutation_p.P830S|LIMCH1_uc003gvx.3_Missense_Mutation_p.P843S|LIMCH1_uc003gwe.3_Missense_Mutation_p.P754S|LIMCH1_uc003gvy.3_Missense_Mutation_p.P659S|LIMCH1_uc003gwa.3_Missense_Mutation_p.P671S|LIMCH1_uc003gvz.3_Missense_Mutation_p.P1215S|LIMCH1_uc011byu.1_Missense_Mutation_p.P664S|LIMCH1_uc003gwc.3_Missense_Mutation_p.P676S|LIMCH1_uc003gwd.3_Missense_Mutation_p.P664S|LIMCH1_uc011byv.1_Missense_Mutation_p.P581S|LIMCH1_uc011byw.1_Missense_Mutation_p.P130S	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	831					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CACTGTGGTTCCATTTACTGT	0.418													39	78					0	0	0.009718	0	0
LNX1	84708	broad.mit.edu	37	4	54347931	54347931	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:54347931C>G	uc003hag.3	-	7	1697	c.1441G>C	c.(1441-1443)GGC>CGC	p.G481R	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.G385R|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	481						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GACCAGCTGCCATTGCTGTTC	0.627													12	23					0	0	0.013537	0	0
KDR	3791	broad.mit.edu	37	4	55948709	55948709	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:55948709G>A	uc003has.2	-	28	4058	c.3756C>T	c.(3754-3756)ATC>ATT	p.I1252I	KDR_uc003hat.1_Silent_p.I1252I	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1252	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTACATCTGGGATTACTTTTA	0.358			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			31	63					0	0	0.012213	0	0
CENPC1	1060	broad.mit.edu	37	4	68406743	68406743	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:68406743C>A	uc003hdd.1	-	3	274	c.91G>T	c.(91-93)GGC>TGC	p.G31C	CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.G31C	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	31					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						ACATTCTGGCCTTGCTCTGTG	0.328													5	11					0.000602214	0.000612282	0.000602	1	0
UBA6	55236	broad.mit.edu	37	4	68489893	68489893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:68489893G>A	uc003hdg.3	-	30	2843	c.2791C>T	c.(2791-2793)CCA>TCA	p.P931S		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	931					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						ACTACAATTGGAATGGCTAAG	0.313													24	42					0	0	0.002780	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68693003	68693003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:68693003C>T	uc003hdq.2	-	8	993	c.928G>A	c.(928-930)GGA>AGA	p.G310R	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc003hdp.2_Missense_Mutation_p.G91R|TMPRSS11D_uc011caj.1_Missense_Mutation_p.G193R	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	310	Peptidase S1.|Extracellular (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GCGCCCCATCCTGTTACATAA	0.378													40	90					0	0	0.009718	0	0
Unknown	0	broad.mit.edu	37	4	69332449	69332449	+	Missense_Mutation	SNP	G	A	A	rs145801188		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:69332449G>A	uc003hdz.3	+	3	301	c.237G>A	c.(235-237)ATG>ATA	p.M79I		NM_014058	NP_054777			transmembrane protease, serine 11E																		TTACAGAAATGAGCCAGAGAC	0.343													126	248					0	0	0.014410	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870607	69870607	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:69870607G>A	uc011cao.1	-	9	1579	c.1443C>T	c.(1441-1443)TTC>TTT	p.F481F	UGT2B10_uc011can.1_Silent_p.F397F			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	518					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						CTTTTCTAGCGAACTTCCAGA	0.398													50	51					0	0	0.014410	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013023	73013023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:73013023C>T	uc003hgg.2	+	4	1161	c.1063C>T	c.(1063-1065)CAC>TAC	p.H355Y	NPFFR2_uc010iig.1_Missense_Mutation_p.H137Y|NPFFR2_uc003hgi.2_Missense_Mutation_p.H256Y|NPFFR2_uc003hgh.2_Missense_Mutation_p.H253Y|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	355	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TGCAGTTCCTCACACAGGCAG	0.502													26	46					0	0	0.003954	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73156631	73156631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:73156631G>A	uc003hgk.1	-	20	2909	c.2872C>T	c.(2872-2874)CGC>TGC	p.R958C		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	958	TSP type-1 3.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CAGGGCCGGCGGCTCTCGGGA	0.567													23	45					0	0	0.002780	0	0
WDFY3	23001	broad.mit.edu	37	4	85658343	85658343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:85658343G>A	uc003hpd.2	-	41	7159	c.6751C>T	c.(6751-6753)CAT>TAT	p.H2251Y		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2251						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTACCCAAATGATTCTGCCAG	0.433													33	59					0	0	0.004878	0	0
DSPP	1834	broad.mit.edu	37	4	88533473	88533474	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:88533473_88533474GG>AA	uc003hqu.2	+	4	256	c.136_splice	c.e4-1	p.D46_splice		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein						biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		TTCTTTTTCAGGATGAGTTAAA	0.381													11	20					0	0	0.004672	0	0
IBSP	3381	broad.mit.edu	37	4	88732577	88732577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:88732577G>A	uc003hqx.3	+	7	567	c.469G>A	c.(469-471)GAG>AAG	p.E157K		NM_004967	NP_004958	P21815	SIAL_HUMAN	integrin-binding sialoprotein precursor	157	Poly-Glu.|Asp/Glu-rich (acidic).				biomineral tissue development|cell adhesion|ossification						0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000333)|COAD - Colon adenocarcinoma(81;0.154)		agaggaggaagaggaaggaaa	0.308													8	23					0	0	0.003080	0	0
GPRIN3	285513	broad.mit.edu	37	4	90171259	90171259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:90171259C>T	uc003hsm.1	-	2	522	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	1										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GTACAGTCCCCATGGAATTTC	0.552													44	73					0	0	0.014410	0	0
MMRN1	22915	broad.mit.edu	37	4	90857303	90857303	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:90857303T>G	uc003hst.2	+	6	2543	c.2472T>G	c.(2470-2472)TAT>TAG	p.Y824*	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Nonsense_Mutation_p.Y566*	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	824	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		AAAAGATGTATCAAATGTTCA	0.353													18	30					0	0	0.007413	0	0
C4orf17	84103	broad.mit.edu	37	4	100460485	100460485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:100460485C>T	uc003huw.2	+	7	1117	c.794C>T	c.(793-795)TCA>TTA	p.S265L	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	265											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		ACTGCAAAATCAAAAGTGCTG	0.458													28	75					0	0	0.009535	0	0
CENPE	1062	broad.mit.edu	37	4	104057328	104057328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:104057328C>T	uc003hxb.1	-	40	6582	c.6492G>A	c.(6490-6492)ATG>ATA	p.M2164I	CENPE_uc003hxc.1_Missense_Mutation_p.M2043I	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	2164	Kinetochore-binding domain.|Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TGTGGAATTCCATGGAGCATC	0.318													49	69					0	0	0.014410	0	0
SYNPO2	171024	broad.mit.edu	37	4	119979074	119979074	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:119979074G>A	uc010inb.2	+	5	3967	c.3771G>A	c.(3769-3771)TGG>TGA	p.W1257*	SYNPO2_uc011cgh.1_3'UTR|SYNPO2_uc010inc.2_Nonsense_Mutation_p.W1127*	NM_133477	NP_597734	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform a	Error:Variant_position_missing_in_Q9UMS6_after_alignment						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CAAGGGGATGGAGACGCCAAA	0.393													35	49					0	0	0.004289	0	0
USP53	54532	broad.mit.edu	37	4	120194808	120194809	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:120194808_120194809CC>TT	uc003ics.3	+	16	3262_3263	c.2196_2197CC>TT	c.(2194-2199)AACCTA>AATTTA	p.732_733NL>NL	USP53_uc003icr.3_Silent_p.732_733NL>NL|USP53_uc003icu.3_Silent_p.355_356NL>NL	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	732_733					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						CGACAAGCAACCTAAATAAAGA	0.307													5	32					0	0	0.004672	0	0
PRDM5	11107	broad.mit.edu	37	4	121774692	121774692	+	Missense_Mutation	SNP	G	A	A	rs142855444		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:121774692G>A	uc003idn.2	-	3	431	c.181C>T	c.(181-183)CGT>TGT	p.R61C	PRDM5_uc003ido.2_Missense_Mutation_p.R61C|PRDM5_uc010ine.2_Missense_Mutation_p.R61C|PRDM5_uc010inf.2_Missense_Mutation_p.R61C|PRDM5_uc003idp.1_Missense_Mutation_p.R61C	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	61	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TTACTCCCACGAACCTGAAAC	0.423													100	173					0	0	0.014410	0	0
TBC1D9	23158	broad.mit.edu	37	4	141590809	141590809	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:141590809G>A	uc010ioj.2	-	8	1688	c.1416C>T	c.(1414-1416)CCC>CCT	p.P472P		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	472						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TGAACTCCTCGGGAGACCGCC	0.473													15	19					0	0	0.002450	0	0
LRBA	987	broad.mit.edu	37	4	151753103	151753103	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:151753103A>G	uc010ipj.2	-	29	5069	c.4595T>C	c.(4594-4596)TTA>TCA	p.L1532S	LRBA_uc003ilt.3_Missense_Mutation_p.L191S|LRBA_uc003ilu.3_Missense_Mutation_p.L1532S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	1532	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TGCCAAGGCTAAAAATTGAGC	0.333													32	73					0	0	0.005524	0	0
FHDC1	85462	broad.mit.edu	37	4	153864378	153864378	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:153864378T>G	uc003inf.2	+	1	244	c.169T>G	c.(169-171)TCC>GCC	p.S57A		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	57					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					GTGTCCTTCCTCCCCTCCTCC	0.458													6	14					0	0	0.003080	0	0
KIAA0922	23240	broad.mit.edu	37	4	154517466	154517466	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:154517466G>T	uc003inm.3	+	20	2101	c.2049G>T	c.(2047-2049)TTG>TTT	p.L683F	KIAA0922_uc010ipp.2_Missense_Mutation_p.L684F|KIAA0922_uc010ipq.2_Missense_Mutation_p.L452F	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	683	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TGCAGCCTTTGGAAATGAAAA	0.423													37	99					3.66854e-30	3.79036e-30	0.007835	1	0
DCHS2	54798	broad.mit.edu	37	4	155252864	155252864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:155252864G>A	uc003inw.2	-	10	2236	c.2236C>T	c.(2236-2238)CCA>TCA	p.P746S	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	746	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GTGCCTGCTGGACCTGCACAA	0.308													10	15					0	0	0.006214	0	0
FGG	2266	broad.mit.edu	37	4	155533572	155533572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:155533572C>T	uc003ioj.2	-	2	235	c.94G>A	c.(94-96)GAC>AAC	p.D32N	FGG_uc003iog.2_Missense_Mutation_p.D32N|FGG_uc003ioh.2_Missense_Mutation_p.D32N|FGG_uc010ipx.2_5'UTR|FGG_uc010ipy.2_5'UTR|FGG_uc003ioi.2_5'Flank|FGG_uc003iok.2_Missense_Mutation_p.D32N	NM_021870	NP_068656	P02679	FIBG_HUMAN	fibrinogen, gamma chain isoform gamma-B	32					platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding				0	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	CAGCAGTTGTCTCTGGTAGCA	0.343													62	124					0	0	0.014410	0	0
PDGFC	56034	broad.mit.edu	37	4	157771485	157771485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:157771485G>A	uc003iph.1	-	2	693	c.202C>T	c.(202-204)CCA>TCA	p.P68S	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	68	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GTATTTCTTGGATAAGTATGA	0.378													30	42					0	0	0.009535	0	0
FSTL5	56884	broad.mit.edu	37	4	162307420	162307420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:162307420G>A	uc003iqh.2	-	16	2459	c.2023C>T	c.(2023-2025)CCA>TCA	p.P675S	FSTL5_uc003iqi.2_Missense_Mutation_p.P674S|FSTL5_uc010iqv.2_Missense_Mutation_p.P665S|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	675						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ATGACCTGTGGGGAAACTGCT	0.502													27	47					0	0	0.008361	0	0
NAF1	92345	broad.mit.edu	37	4	164050071	164050071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:164050071G>A	uc003iqj.2	-	8	1657	c.1463C>T	c.(1462-1464)TCT>TTT	p.S488F	NAF1_uc010iqw.1_Intron	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	488					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				TCCAAAATGAGAATTACTATC	0.259													19	24					0	0	0.007413	0	0
ANP32C	23520	broad.mit.edu	37	4	165118291	165118291	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:165118291C>T	uc011cjk.1	-	1	573	c.573G>A	c.(571-573)GAG>GAA	p.E191E	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	191	Asp/Glu-rich (highly acidic).										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		caccttcctcctcctcctcct	0.204													8	9					0	0	0.003080	0	0
PALLD	23022	broad.mit.edu	37	4	169812091	169812091	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:169812091C>T	uc011cjx.1	+	11	2194	c.1983C>T	c.(1981-1983)GCC>GCT	p.A661A	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Silent_p.A661A|PALLD_uc003irv.2_Silent_p.A279A|PALLD_uc003irw.2_Silent_p.A163A	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	885	Interaction with ACTN.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CAAAGAAGGCCAGTAGAACTG	0.433									Pancreatic_Cancer_Familial_Clustering_of				43	53					0	0	0.011902	0	0
C4orf27	54969	broad.mit.edu	37	4	170663204	170663204	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:170663204G>A	uc003isl.3	-	5	617	c.552C>T	c.(550-552)CTC>CTT	p.L184L		NM_017867	NP_060337	Q9NWY4	CD027_HUMAN	hypothetical protein LOC54969	184						nucleus				ovary(1)|pancreas(1)	2		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.018)|LUSC - Lung squamous cell carcinoma(193;0.116)		TGTTTTTCAAGAGATTGATTT	0.358													21	58					0	0	0.012319	0	0
GALNT7	51809	broad.mit.edu	37	4	174213410	174213410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:174213410G>A	uc003isz.3	+	3	822	c.739G>A	c.(739-741)GAT>AAT	p.D247N	GALNT7_uc011ckb.1_Missense_Mutation_p.D24N	NM_017423	NP_059119	Q86SF2	GALT7_HUMAN	polypeptide N-acetylgalactosaminyltransferase 7	247	Catalytic subdomain A.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			central_nervous_system(1)	1		Prostate(90;0.0132)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_hematologic(60;0.107)|all_neural(102;0.122)		all cancers(43;1.87e-18)|Epithelial(43;3.44e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-09)|STAD - Stomach adenocarcinoma(60;0.0019)|GBM - Glioblastoma multiforme(59;0.0119)|LUSC - Lung squamous cell carcinoma(193;0.0199)		GTTAATTGACGATTTCAGTAA	0.318													14	32					0	0	0.004007	0	0
MORF4	10934	broad.mit.edu	37	4	174537479	174537479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:174537479G>A	uc011cke.1	-	1	316	c.316C>T	c.(316-318)CTT>TTT	p.L106F		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TAGTCCTCAAGAATGGAATCC	0.393													94	179					0	0	0.014410	0	0
SLC25A4	291	broad.mit.edu	37	4	186066010	186066010	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:186066010C>T	uc003ixd.2	+	2	333	c.204C>T	c.(202-204)CTC>CTT	p.L68L	SLC25A4_uc003ixe.2_RNA	NM_001151	NP_001142	P12235	ADT1_HUMAN	adenine nucleotide translocator 1	68	Solcar 1.				energy reserve metabolic process|interspecies interaction between organisms|mitochondrial genome maintenance|negative regulation of necrotic cell death|regulation of insulin secretion|viral reproduction	integral to plasma membrane|mitochondrial inner membrane	adenine transmembrane transporter activity|protein binding			ovary(1)	1		all_lung(41;1.19e-13)|Lung NSC(41;3.16e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00872)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;4.48e-44)|Epithelial(43;2.1e-41)|all cancers(43;1.37e-36)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)	Adenosine triphosphate(DB00171)|Clodronate(DB00720)	AGGGCTTCCTCTCCTTCTGGA	0.527													49	79					0	0	0.014410	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	163455	163455	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:163455C>T	uc003jak.2	+	11	2250	c.2200C>T	c.(2200-2202)CAG>TAG	p.Q734*		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	734					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CGAGATACCTCAGCCCGACAG	0.562													51	92					0	0	0.014410	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239924	5239924	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:5239924G>A	uc003jdl.2	+	16	2547	c.2409G>A	c.(2407-2409)GTG>GTA	p.V803V	ADAMTS16_uc003jdk.1_Silent_p.V803V	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	803	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ACTGGACCGTGGACTGGCCCG	0.522													42	82					0	0	0.010771	0	0
DNAH5	1767	broad.mit.edu	37	5	13771003	13771003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:13771003C>T	uc003jfd.2	-	56	9502	c.9460G>A	c.(9460-9462)GAT>AAT	p.D3154N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3154	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCACCCCATCCTGGAAGGAG	0.448									Kartagener_syndrome				24	61					0	0	0.002780	0	0
DNAH5	1767	broad.mit.edu	37	5	13839514	13839514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:13839514C>T	uc003jfd.2	-	35	5875	c.5833G>A	c.(5833-5835)GAA>AAA	p.E1945K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1945	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTAAAAATTCATTCTGGTAT	0.428									Kartagener_syndrome				33	61					0	0	0.004878	0	0
DNAH5	1767	broad.mit.edu	37	5	13901505	13901505	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:13901505C>T	uc003jfd.2	-	14	1950	c.1908G>A	c.(1906-1908)AGG>AGA	p.R636R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	636	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTGCTGAATCCTATGGAAGA	0.517									Kartagener_syndrome				16	24					0	0	0.007413	0	0
CDH18	1016	broad.mit.edu	37	5	19520879	19520879	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:19520879C>G	uc003jgc.2	-	9	1776	c.1399G>C	c.(1399-1401)GAT>CAT	p.D467H	CDH18_uc003jgd.2_Missense_Mutation_p.D467H|CDH18_uc011cnm.1_Missense_Mutation_p.D467H	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	467	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTCAGCAAATCAGGATTATCT	0.373													58	113					0	0	0.014410	0	0
CDH18	1016	broad.mit.edu	37	5	19838942	19838942	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:19838942T>C	uc003jgc.2	-	2	531	c.154A>G	c.(154-156)AAA>GAA	p.K52E	CDH18_uc003jgd.2_Missense_Mutation_p.K52E|CDH18_uc011cnm.1_Missense_Mutation_p.K52E	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	52					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CATCCCCTTTTGGGACGATGA	0.418													23	54					0	0	0.003954	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33588887	33588887	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:33588887G>A	uc003jia.1	-	18	2845	c.2682C>T	c.(2680-2682)TGC>TGT	p.C894C	ADAMTS12_uc010iuq.1_Silent_p.C809C	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	894	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ATGTCGCCGAGCATGCTTCCC	0.587										HNSCC(64;0.19)	OREG0016553	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	30					0	0	0.012319	0	0
SPEF2	79925	broad.mit.edu	37	5	35779286	35779286	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:35779286T>A	uc003jjo.2	+	30	4396	c.4285T>A	c.(4285-4287)TAT>AAT	p.Y1429N	SPEF2_uc003jjp.1_Missense_Mutation_p.Y915N|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1429					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAATGAACTTTATTTAAGCCA	0.378													20	57					0	0	0.014323	0	0
C5orf42	65250	broad.mit.edu	37	5	37169169	37169169	+	Silent	SNP	T	C	C	rs143147192	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:37169169T>C	uc011cpa.1	-	34	7188	c.6957A>G	c.(6955-6957)CAA>CAG	p.Q2319Q	C5orf42_uc011coy.1_Silent_p.Q819Q|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.Q1394Q|C5orf42_uc003jkr.1_Silent_p.Q352Q	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2319										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			GTCCAACATATTGATCCAAGT	0.373													4	125					0	0	0.009096	0	0
EGFLAM	133584	broad.mit.edu	37	5	38406258	38406258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:38406258G>A	uc003jlc.1	+	7	1067	c.743G>A	c.(742-744)GGA>GAA	p.G248E	EGFLAM_uc003jlb.1_Missense_Mutation_p.G248E|EGFLAM_uc003jle.1_Missense_Mutation_p.G14E|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	248						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGCCGCTATGGACCCCGTTAT	0.478													22	34					0	0	0.003330	0	0
EGFLAM	133584	broad.mit.edu	37	5	38438452	38438453	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:38438452_38438453CC>TT	uc003jlc.1	+	17	2683_2684	c.2359_2360CC>TT	c.(2359-2361)CCC>TTC	p.P787F	EGFLAM_uc003jlb.1_Missense_Mutation_p.P787F|EGFLAM_uc003jle.1_Missense_Mutation_p.P553F|EGFLAM_uc003jlf.1_Missense_Mutation_p.P153F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	787	Laminin G-like 2.|EGF-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGCGGCCCACCCCTGTGTGAGA	0.559													18	26					0	0	0.004672	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451522	38451522	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:38451522C>T	uc003jlc.1	+	20	2997	c.2673C>T	c.(2671-2673)TTC>TTT	p.F891F	EGFLAM_uc003jlb.1_Silent_p.F883F|EGFLAM_uc003jle.1_Silent_p.F649F|EGFLAM_uc003jlf.1_Silent_p.F249F|EGFLAM_uc003jlg.1_Silent_p.F26F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	891	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACAGCGACTTCATTTCCTTGG	0.512													64	86					0	0	0.014410	0	0
DAB2	1601	broad.mit.edu	37	5	39382768	39382768	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:39382768G>A	uc003jlx.2	-	10	1824	c.1293C>T	c.(1291-1293)ATC>ATT	p.I431I	DAB2_uc003jlw.2_Silent_p.I410I	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	431					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GTGGAGGTGGGATAATGGCTA	0.488													34	63					0	0	0.010818	0	0
DAB2	1601	broad.mit.edu	37	5	39382834	39382834	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:39382834C>T	uc003jlx.2	-	10	1758	c.1227G>A	c.(1225-1227)CAG>CAA	p.Q409Q	DAB2_uc003jlw.2_Silent_p.Q388Q	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	409					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TTACGCCATTCTGTATGGACA	0.498													42	58					0	0	0.013114	0	0
CARD6	84674	broad.mit.edu	37	5	40854198	40854198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:40854198G>A	uc003jmg.2	+	3	2839	c.2764G>A	c.(2764-2766)GGT>AGT	p.G922S		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	922					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						GAAGACACAAGGTGGGGCTTC	0.498													57	103					0	0	0.014410	0	0
C7	730	broad.mit.edu	37	5	40955635	40955635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:40955635C>T	uc003jmh.2	+	10	1354	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	414	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GACTAATCTTCCTCAAGTCAT	0.413													31	80					0	0	0.009535	0	0
C6	729	broad.mit.edu	37	5	41149459	41149459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:41149459G>A	uc003jmk.2	-	17	2717	c.2507C>T	c.(2506-2508)TCC>TTC	p.S836F	C6_uc003jml.1_Missense_Mutation_p.S836F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	836	C5b-binding domain.|Complement control factor I module 1.|Kazal-like 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GTCTTGGCAGGAACCAATATG	0.423													72	100					0	0	0.014410	0	0
C6	729	broad.mit.edu	37	5	41159225	41159225	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:41159225C>T	uc003jmk.2	-	12	2025	c.1815G>A	c.(1813-1815)AAG>AAA	p.K605K	C6_uc003jml.1_Silent_p.K605K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	605	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CCTCTTGTCGCTTCTCCCCCT	0.473													52	98					0	0	0.014410	0	0
GHR	2690	broad.mit.edu	37	5	42718182	42718182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:42718182C>T	uc003jmt.2	+	9	947	c.904C>T	c.(904-906)CCA>TCA	p.P302S	GHR_uc011cpq.1_Missense_Mutation_p.P115S	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	302	Cytoplasmic (Potential).|Box 1 motif.				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCCCCCAGTTCCAGTTCCAAA	0.318													32	69					0	0	0.008740	0	0
MGC42105	167359	broad.mit.edu	37	5	43280276	43280276	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:43280276G>A	uc003jno.2	+	4	1637	c.756G>A	c.(754-756)GTG>GTA	p.V252V		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	252	Protein kinase.						ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						GCATTTACGTGGATATCTGGG	0.517													32	60					0	0	0.008361	0	0
EMB	133418	broad.mit.edu	37	5	49699070	49699070	+	Silent	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:49699070A>T	uc003jom.2	-	6	1068	c.819T>A	c.(817-819)CTT>CTA	p.L273L	EMB_uc010ivq.2_Silent_p.L67L|EMB_uc003jol.2_Silent_p.L204L|EMB_uc011cpy.1_Silent_p.L223L|EMB_uc010ivr.2_Silent_p.L219L	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	273	Helical; (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				TGGCCACTAAAAGAATCACCT	0.378													20	53					0	0	0.010504	0	0
IQGAP2	10788	broad.mit.edu	37	5	75886394	75886394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:75886394G>A	uc003kek.2	+	8	1024	c.802G>A	c.(802-804)GAA>AAA	p.E268K		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	268					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GAAAAAAGAGGAAAATGCAAG	0.348													14	32					0	0	0.001855	0	0
IQGAP2	10788	broad.mit.edu	37	5	75954283	75954283	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:75954283G>A	uc003kek.2	+	21	2543	c.2321_splice	c.e21-1	p.V774_splice	IQGAP2_uc010izv.2_Splice_Site_p.V327_splice|IQGAP2_uc011csv.1_Splice_Site_p.V270_splice|IQGAP2_uc003kel.2_Splice_Site_p.V270_splice	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2						small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		TGTCACTGCAGTTGGCTCTGA	0.368													43	66					0	0	0.013114	0	0
BHMT2	23743	broad.mit.edu	37	5	78384391	78384391	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:78384391C>T	uc003kft.2	+	8	1109	c.1086C>T	c.(1084-1086)GAC>GAT	p.D362D	BHMT2_uc011cth.1_Silent_p.D298D	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	362					methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	CAAAGCCAGACTTCTAAGGAG	0.463													18	38					0	0	0.006122	0	0
CMYA5	202333	broad.mit.edu	37	5	79028080	79028080	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:79028080C>T	uc003kgc.2	+	2	3564	c.3492C>T	c.(3490-3492)ACC>ACT	p.T1164T		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1164						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGGAAGAAACCAAACCTGCAT	0.448													18	32					0	0	0.006122	0	0
CKMT2	1160	broad.mit.edu	37	5	80550306	80550306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:80550306C>T	uc003khc.3	+	5	685	c.443C>T	c.(442-444)TCA>TTA	p.S148L	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.S148L|CKMT2_uc003khd.3_Missense_Mutation_p.S148L|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	148					creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	CTGGATGCATCAAAGGTAGGC	0.572													23	45					0	0	0.003330	0	0
GPR98	84059	broad.mit.edu	37	5	89953946	89953946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:89953946G>A	uc003kju.2	+	21	4699	c.4603G>A	c.(4603-4605)GAG>AAG	p.E1535K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1535	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGACAATGACGAGGAAGGAGA	0.358													46	80					0	0	0.014410	0	0
GPR98	84059	broad.mit.edu	37	5	89979591	89979591	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:89979591C>T	uc003kju.2	+	28	5949	c.5853C>T	c.(5851-5853)GTC>GTT	p.V1951V	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1951	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CTGTGTCAGTCCTCAGTGTTT	0.433													21	22					0	0	0.012319	0	0
MCTP1	79772	broad.mit.edu	37	5	94230396	94230396	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:94230396G>A	uc003kkx.2	-	11	1797	c.1797C>T	c.(1795-1797)TCC>TCT	p.S599S	MCTP1_uc003kkv.2_Silent_p.S378S|MCTP1_uc003kkw.2_Silent_p.S332S|MCTP1_uc003kkz.2_Silent_p.S260S|MCTP1_uc003kku.2_Silent_p.S115S	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	599					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GGTCCTCCAGGGAGTTGACAG	0.507													13	34					0	0	0.002450	0	0
CAST	831	broad.mit.edu	37	5	96073640	96073640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:96073640C>T	uc003klz.1	+	9	700	c.538C>T	c.(538-540)CCA>TCA	p.P180S	CAST_uc003klt.2_Missense_Mutation_p.P180S|CAST_uc003klu.2_Missense_Mutation_p.P263S|CAST_uc003klv.2_Missense_Mutation_p.P241S|CAST_uc003klw.2_Missense_Mutation_p.P244S|CAST_uc003klx.2_Missense_Mutation_p.P222S|CAST_uc003kly.2_Missense_Mutation_p.P241S|CAST_uc011cuo.1_Missense_Mutation_p.P226S|CAST_uc011cup.1_Missense_Mutation_p.P131S|CAST_uc011cuq.1_Missense_Mutation_p.P28S|CAST_uc011cur.1_Missense_Mutation_p.P166S|CAST_uc011cus.1_Missense_Mutation_p.P180S|CAST_uc003kma.1_Missense_Mutation_p.P139S|CAST_uc011cut.1_Missense_Mutation_p.P108S|CAST_uc003kmb.2_Missense_Mutation_p.P139S|CAST_uc003kmc.2_Missense_Mutation_p.P180S|CAST_uc003kmd.2_Missense_Mutation_p.P158S|CAST_uc003kme.2_Missense_Mutation_p.P139S|CAST_uc003kmf.2_Missense_Mutation_p.P158S	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	180	Inhibitory domain 1.						calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		GTATACTGGACCAGAAGTTTC	0.383													45	66					0	0	0.013114	0	0
AP3S1	1176	broad.mit.edu	37	5	115249063	115249063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:115249063G>A	uc003krl.2	+	6	574	c.458G>A	c.(457-459)GGC>GAC	p.G153D	AP3S1_uc003krk.2_Missense_Mutation_p.G131D|AP3S1_uc003krm.2_Missense_Mutation_p.G117D	NM_001284	NP_001275	Q92572	AP3S1_HUMAN	adaptor-related protein complex 3, sigma 1	153					insulin receptor signaling pathway|intracellular protein transport|vesicle-mediated transport	AP-type membrane coat adaptor complex|cytoplasmic vesicle membrane|Golgi apparatus|transport vesicle	protein binding|protein transporter activity				0		all_cancers(142;0.00377)|all_epithelial(76;0.000129)|Prostate(80;0.0132)|Ovarian(225;0.0776)|Lung NSC(810;0.245)		OV - Ovarian serous cystadenocarcinoma(64;1.08e-07)|Epithelial(69;1.11e-06)|all cancers(49;5.2e-05)		ATACAGGCTGGCTTAGCAGGA	0.363													19	50					0	0	0.007413	0	0
SEMA6A	57556	broad.mit.edu	37	5	115782538	115782538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:115782538C>T	uc010jck.2	-	19	3573	c.2864G>A	c.(2863-2865)AGG>AAG	p.R955K	SEMA6A_uc003krx.3_Missense_Mutation_p.R972K|SEMA6A_uc011cwe.1_Missense_Mutation_p.R334K|SEMA6A_uc003krv.3_Missense_Mutation_p.R382K|SEMA6A_uc003krw.3_Missense_Mutation_p.R432K|SEMA6A_uc010jcj.2_Missense_Mutation_p.R499K	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	955	Cytoplasmic (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		GTTGTCTCCCCTGCCAAAGCT	0.612													13	16					0	0	0.002450	0	0
ISOC1	51015	broad.mit.edu	37	5	128448568	128448568	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:128448568C>T	uc003kva.2	+	5	789	c.771C>T	c.(769-771)ATC>ATT	p.I257I		NM_016048	NP_057132	Q96CN7	ISOC1_HUMAN	isochorismatase domain containing 1	257						peroxisome	catalytic activity				0		all_cancers(142;0.0813)|Prostate(80;0.0865)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.138)|OV - Ovarian serous cystadenocarcinoma(64;0.164)		GAACCGGGATCATAGTGACCA	0.428													32	67					0	0	0.012213	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128990004	128990004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:128990004C>T	uc003kvb.1	+	14	2164	c.2164C>T	c.(2164-2166)CCA>TCA	p.P722S	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	722	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGTAGAAAAACCATGTGCCTT	0.318													20	55					0	0	0.012319	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129037189	129037190	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:129037189_129037190CC>TT	uc003kvb.1	+	20	3045_3046	c.3045_3046CC>TT	c.(3043-3048)GCCCGA>GCTTGA	p.R1016*	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1016	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGATTAGAGCCCGAGAGAGGGA	0.579													17	45					0	0	0.004672	0	0
P4HA2	8974	broad.mit.edu	37	5	131543476	131543476	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:131543476G>A	uc003kwh.2	-	8	1569	c.1005C>T	c.(1003-1005)AGC>AGT	p.S335S	P4HA2_uc003kwg.2_Silent_p.S335S|P4HA2_uc003kwi.2_Silent_p.S335S|P4HA2_uc003kwk.2_Silent_p.S335S|P4HA2_uc003kwl.2_Silent_p.S335S|P4HA2_uc003kwj.2_Silent_p.S335S	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	335						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	CGATGTGCGGGCTGTCCCACT	0.532													56	128					0	0	0.014410	0	0
MYOT	9499	broad.mit.edu	37	5	137223044	137223044	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:137223044A>G	uc011cye.1	+	10	1484	c.1467A>G	c.(1465-1467)CAA>CAG	p.Q489Q	PKD2L2_uc010jep.1_5'Flank|PKD2L2_uc003lbw.1_5'Flank|PKD2L2_uc003lbx.2_5'Flank|PKD2L2_uc003lby.2_5'Flank|MYOT_uc003lbv.2_Silent_p.Q489Q|MYOT_uc011cyg.1_Silent_p.Q305Q|MYOT_uc011cyh.1_Silent_p.Q374Q	NM_001135940	NP_001129412	Q9UBF9	MYOTI_HUMAN	myotilin isoform b	489	Necessary for interaction with ACTA1.|Necessary for interaction with FLNC.				muscle contraction	actin cytoskeleton|sarcolemma|sarcomere	actin binding|structural constituent of muscle			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TGGCAGCTCAATCTGGACTCT	0.328													40	47					0	0	0.010771	0	0
BRD8	10902	broad.mit.edu	37	5	137475806	137475807	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:137475806_137475807CC>TT	uc003lcf.1	-	27	3719_3720	c.3664_3665GG>AA	c.(3664-3666)GGA>AAA	p.G1222K	BRD8_uc003lcc.1_Intron|NME5_uc003lce.2_5'Flank	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	1222					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			AGCTGGTTCTCCTTCCAGACTA	0.416													23	69					0	0	0.004672	0	0
BRD8	10902	broad.mit.edu	37	5	137497483	137497483	+	Splice_Site	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:137497483A>C	uc003lcf.1	-	17	2304	c.2249_splice	c.e17+1	p.R750_splice	BRD8_uc003lcc.1_Splice_Site|BRD8_uc011cyl.1_Splice_Site_p.R529_splice|BRD8_uc003lcg.2_Splice_Site_p.R823_splice|BRD8_uc003lci.2_Splice_Site_p.R753_splice|BRD8_uc003lch.2_Splice_Site_p.R644_splice|BRD8_uc011cym.1_Splice_Site_p.R734_splice|BRD8_uc010jer.1_Splice_Site_p.R719_splice|BRD8_uc011cyn.1_Splice_Site_p.R709_splice	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2						cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			ACCATGGCTCACCTCTGCACA	0.428													12	26					0	0	0.013537	0	0
GFRA3	2676	broad.mit.edu	37	5	137600188	137600188	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:137600188G>A	uc003lcn.2	-	2	281	c.141C>T	c.(139-141)GCC>GCT	p.A47A	GFRA3_uc003lco.2_Silent_p.A47A	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	47					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			ACTTCCTCCTGGCCTGGAGAC	0.562													19	34					0	0	0.014323	0	0
CXXC5	51523	broad.mit.edu	37	5	139061000	139061000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:139061000G>A	uc010jfg.1	+	2	1182	c.892G>A	c.(892-894)GAA>AAA	p.E298K	CXXC5_uc003let.2_Missense_Mutation_p.E298K	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	298					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAATGTGAGGAACTCAAAAA	0.557													65	114					0	0	0.014410	0	0
SLC4A9	83697	broad.mit.edu	37	5	139747451	139747451	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:139747451C>T	uc003lfm.2	+	16	2429	c.2394C>T	c.(2392-2394)GCC>GCT	p.A798A	SLC4A9_uc003lfj.2_Silent_p.A774A|SLC4A9_uc011czg.1_Silent_p.A711A|SLC4A9_uc003lfl.2_Silent_p.A774A|SLC4A9_uc003lfk.2_Silent_p.A760A	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	798	Membrane (anion exchange).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCCTGTGCCCCCGGGGAGC	0.577													10	19					0	0	0.010729	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908476	139908476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:139908476C>T	uc003lfs.1	+	29	6069	c.5945C>T	c.(5944-5946)ACT>ATT	p.T1982I	ANKHD1_uc003lfr.2_Missense_Mutation_p.T1982I|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.T721I|ANKHD1_uc003lfw.2_Missense_Mutation_p.T620I|ANKHD1_uc010jfl.2_Missense_Mutation_p.T417I|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.T119I	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1982						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACAAGCACTTGTAGTTCC	0.488													104	164					0	0	0.014410	0	0
SLC35A4	113829	broad.mit.edu	37	5	139946858	139946858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:139946858C>T	uc003lgg.1	+	3	832	c.104C>T	c.(103-105)CCA>CTA	p.P35L	APBB3_uc003lgc.1_5'Flank|APBB3_uc003lgd.1_5'Flank|APBB3_uc003lge.1_5'Flank|APBB3_uc003lgf.1_5'Flank|APBB3_uc010jfp.1_5'Flank|APBB3_uc011czi.1_5'Flank|APBB3_uc010jfr.1_5'Flank|SLC35A4_uc003lgh.1_Missense_Mutation_p.P35L	NM_080670	NP_542401	Q96G79	S35A4_HUMAN	solute carrier family 35, member A4	35	Leu-rich.|Helical; (Potential).					Golgi membrane|integral to membrane	sugar:hydrogen symporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCATGCCCCATTGCTGGCA	0.637													31	74					0	0	0.007291	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229401	140229401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140229401G>A	uc003lhu.2	+	1	2045	c.1321G>A	c.(1321-1323)GTG>ATG	p.V441M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.V441M	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	441	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACGGCCAGGGTGTCTGTGGA	0.662													47	81					0	0	0.014410	0	0
PCDHA13	56136	broad.mit.edu	37	5	140262387	140262387	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140262387C>T	uc003lif.2	+	1	534	c.534C>T	c.(532-534)TTC>TTT	p.F178F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.F178F|PCDHA13_uc003lid.2_Silent_p.F178F	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	178	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGATTATTTCACTTTGGACG	0.433													30	83					0	0	0.010818	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530763	140530763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140530763G>A	uc003lir.2	+	1	925	c.925G>A	c.(925-927)GAA>AAA	p.E309K	PCDHB6_uc011dah.1_Missense_Mutation_p.E173K	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	309	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGATTTTGAGGAAATTCAGTC	0.463													31	55					0	0	0.009535	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553530	140553530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140553530G>A	uc003lit.2	+	1	1288	c.1114G>A	c.(1114-1116)GAC>AAC	p.D372N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	372	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAGGATTAGAGACAGAGATTC	0.468													22	29					0	0	0.010504	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558522	140558522	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140558522C>T	uc011dai.1	+	1	1093	c.907C>T	c.(907-909)CGA>TGA	p.R303*	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	303	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGAGAAATTCGACTAAAGAA	0.393													60	253					0	0	0.014410	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567545	140567545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140567545G>A	uc003liw.1	+	1	653	c.653G>A	c.(652-654)GGG>GAG	p.G218E		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	218	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGATGGTGGGTCTCCATCC	0.532													41	66					0	0	0.006999	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573022	140573022	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140573022G>A	uc003lix.2	+	1	1071	c.897G>A	c.(895-897)GGG>GGA	p.G299G		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	299	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTTTTCTGGGGAAATCTTTC	0.378													30	56					0	0	0.007291	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710787	140710787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140710787C>T	uc003lji.1	+	1	536	c.536C>T	c.(535-537)TCC>TTC	p.S179F	PCDHGA1_uc011dan.1_Missense_Mutation_p.S179F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	179	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTCATTTCTCCCTGGATGTG	0.527													58	81					0	0	0.014410	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711777	140711777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140711777C>T	uc003lji.1	+	1	1526	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F	PCDHGA1_uc011dan.1_Missense_Mutation_p.S509F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	509	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCATCAACTCCGACACTGGG	0.562													73	126					0	0	0.014410	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711993	140711994	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140711993_140711994CC>TT	uc003lji.1	+	1	1742_1743	c.1742_1743CC>TT	c.(1741-1743)TCC>TTT	p.S581F	PCDHGA1_uc011dan.1_Missense_Mutation_p.S581F	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	581	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCCCCTCTCCGCAGAGCCCG	0.673													55	86					0	0	0.004672	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140718911	140718911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140718911G>A	uc003ljk.1	+	1	558	c.373G>A	c.(373-375)GAT>AAT	p.D125N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.D125N	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	125	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAAATAACAGATATTAACGA	0.453													42	62					0	0	0.013114	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750016	140750016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140750016C>T	uc003ljw.1	+	1	55	c.55C>T	c.(55-57)CTC>TTC	p.L19F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.L19F	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	19					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGCTATTTCTCTTCCTGCT	0.577													15	37					0	0	0.002450	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774692	140774692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140774692C>T	uc003lkd.1	+	1	3210	c.2312C>T	c.(2311-2313)CCC>CTC	p.P771L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Missense_Mutation_p.P771L	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	771	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGATCTTTCCCCAGCCCAAC	0.478													39	81					0	0	0.013114	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778645	140778645	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:140778645G>A	uc003lkf.1	+	1	951	c.951G>A	c.(949-951)GGG>GGA	p.G317G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.G317G	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	317	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTAGAAGGGAGGGATGGTG	0.383													76	114					0	0	0.014410	0	0
FCHSD1	89848	broad.mit.edu	37	5	141023974	141023974	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:141023974G>A	uc003llk.2	-	17	1725	c.1674C>T	c.(1672-1674)ACC>ACT	p.T558T	FCHSD1_uc010jgg.2_Silent_p.T241T|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	558	SH3 2.								FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTCTGTCCGGTGTAGCTGT	0.627													8	17					0	0	0.004482	0	0
SH3RF2	153769	broad.mit.edu	37	5	145379676	145379676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:145379676G>A	uc003lnt.2	+	3	672	c.434G>A	c.(433-435)AGG>AAG	p.R145K	SH3RF2_uc011dbl.1_Missense_Mutation_p.R145K	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	145	SH3 1.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGTGACCTAAGGTTTAATAAG	0.493													22	49					0	0	0.010504	0	0
HTR4	3360	broad.mit.edu	37	5	147928256	147928256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:147928256G>A	uc003lpn.2	-	4	492	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Missense_Mutation_p.H110Y|HTR4_uc003lpj.1_Missense_Mutation_p.H110Y|HTR4_uc003lpk.2_Missense_Mutation_p.H110Y|HTR4_uc011dby.1_Missense_Mutation_p.H110Y|HTR4_uc003lpl.2_Missense_Mutation_p.H110Y|HTR4_uc003lpm.2_Missense_Mutation_p.H110Y|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Missense_Mutation_p.H110Y	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	110	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	CAGCACAGGTGAAAAATCGAT	0.493													13	11					0	0	0.001855	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148679167	148679167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:148679167G>A	uc003lqh.2	+	2	243	c.112G>A	c.(112-114)GCC>ACC	p.A38T	AFAP1L1_uc003lqg.3_Missense_Mutation_p.A38T|AFAP1L1_uc010jgy.2_Missense_Mutation_p.A38T	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	38							protein binding	p.A38P(1)		breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GATGGCCGTGGCCTCCATCCT	0.612													18	38					0	0	0.010504	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148695858	148695858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:148695858C>T	uc003lqh.2	+	11	1390	c.1259C>T	c.(1258-1260)CCC>CTC	p.P420L	AFAP1L1_uc010jgy.2_Missense_Mutation_p.P420L|AFAP1L1_uc003lqi.1_Missense_Mutation_p.P35L	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	420	PH 2.						protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGAGGTTCCCTGCTGTGGT	0.642													28	60					0	0	0.008361	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149212615	149212615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:149212615C>T	uc003lrc.2	+	5	1021	c.979C>T	c.(979-981)CCC>TCC	p.P327S	PPARGC1B_uc003lrb.1_Missense_Mutation_p.P327S|PPARGC1B_uc003lrd.2_Missense_Mutation_p.P288S|PPARGC1B_uc003lrf.2_Missense_Mutation_p.P306S|PPARGC1B_uc003lre.1_Missense_Mutation_p.P306S	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	327					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CAGATCCCGGCCCTGGTCCCG	0.627													21	61					0	0	0.014323	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149213137	149213137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:149213137G>A	uc003lrc.2	+	5	1543	c.1501G>A	c.(1501-1503)GAG>AAG	p.E501K	PPARGC1B_uc003lrb.1_Missense_Mutation_p.E501K|PPARGC1B_uc003lrd.2_Missense_Mutation_p.E462K|PPARGC1B_uc003lrf.2_Missense_Mutation_p.E480K|PPARGC1B_uc003lre.1_Missense_Mutation_p.E480K	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	501					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GGTCCCCTCGGAGCCCCAAGG	0.662													3	8					0	0	0.000602	0	0
SLC6A7	6534	broad.mit.edu	37	5	149578887	149578887	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:149578887C>T	uc003lrr.2	+	5	1052	c.681C>T	c.(679-681)ATC>ATT	p.I227I		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	227	Helical; Name=4; (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	CCTGGGTCATCGTGTTCCTCT	0.423													24	52					0	0	0.006320	0	0
SLC6A7	6534	broad.mit.edu	37	5	149585174	149585174	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:149585174C>T	uc003lrr.2	+	13	2060	c.1689C>T	c.(1687-1689)GGC>GGT	p.G563G		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	563	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	GAGAAGAGGGCTCACTCTGGG	0.617													25	43					0	0	0.005443	0	0
GLRA1	2741	broad.mit.edu	37	5	151208544	151208544	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:151208544T>C	uc003lut.2	-	8	1284	c.997A>G	c.(997-999)AAC>GAC	p.N333D	GLRA1_uc003lur.2_Missense_Mutation_p.N333D|GLRA1_uc003lus.2_Missense_Mutation_p.N250D	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	333	Helical; (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GACACAAAGTTAACGGCAGCA	0.507													73	132					0	0	0.014410	0	0
CYFIP2	26999	broad.mit.edu	37	5	156786096	156786096	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:156786096C>T	uc003lwq.2	+	26	2895	c.2757C>T	c.(2755-2757)CTC>CTT	p.L919L	CYFIP2_uc011ddn.1_Silent_p.L893L|CYFIP2_uc011ddo.1_Silent_p.L723L|CYFIP2_uc003lwr.2_Silent_p.L919L|CYFIP2_uc003lws.2_Silent_p.L919L|CYFIP2_uc003lwt.2_Silent_p.L822L|CYFIP2_uc011ddp.1_Silent_p.L653L	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	944					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCTGCAGACTCCTGGGTTATC	0.498													79	147					0	0	0.014410	0	0
ATP10B	23120	broad.mit.edu	37	5	160025810	160025810	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:160025810C>G	uc003lym.1	-	22	4378	c.3531G>C	c.(3529-3531)TTG>TTC	p.L1177F	ATP10B_uc010jit.1_Intron	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	1177	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATAGCTCAGGCAATGCCAGGA	0.493													133	234					0	0	0.014410	0	0
KCNIP1	30820	broad.mit.edu	37	5	170159873	170159873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:170159873G>A	uc003mas.2	+	7	1067	c.538G>A	c.(538-540)GAC>AAC	p.D180N	KCNIP1_uc003map.2_Missense_Mutation_p.D178N|KCNIP1_uc003mat.2_Missense_Mutation_p.D169N|KCNIP1_uc010jjp.2_Missense_Mutation_p.D141N|KCNIP1_uc010jjq.2_Missense_Mutation_p.D194N	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	180					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTCAAAGAGGACACTCCAAG	0.498													25	65					0	0	0.007291	0	0
CDHR2	54825	broad.mit.edu	37	5	176011254	176011254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:176011254G>A	uc003mem.1	+	18	2188	c.2122G>A	c.(2122-2124)GAT>AAT	p.D708N	CDHR2_uc003men.1_Missense_Mutation_p.D708N	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	708	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GAAGGAGGAGGATCCAGGTAT	0.562													16	38					0	0	0.004990	0	0
GFPT2	9945	broad.mit.edu	37	5	179757801	179757801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:179757801C>T	uc003mlw.1	-	6	531	c.433G>A	c.(433-435)GAT>AAT	p.D145N		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	145	Glutamine amidotransferase type-2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	GTCTCTGTATCTGTTTCTGAC	0.463													22	39					0	0	0.010504	0	0
CNOT6	57472	broad.mit.edu	37	5	179992836	179992836	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr5:179992836G>T	uc003mlx.2	+	7	925	c.576G>T	c.(574-576)ATG>ATT	p.M192I	CNOT6_uc010jld.2_Missense_Mutation_p.M192I|CNOT6_uc010jle.2_Missense_Mutation_p.M187I	NM_015455	NP_056270	Q9ULM6	CNOT6_HUMAN	CCR4-NOT transcription complex, subunit 6	192					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	exonuclease activity|metal ion binding|protein binding|RNA binding				0	all_cancers(89;3.3e-05)|all_epithelial(37;7.38e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00543)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.023)		TTTCTGTCATGTGCTATAATG	0.363													33	58					6.00712e-18	6.18748e-18	0.012213	1	0
DSP	1832	broad.mit.edu	37	6	7565653	7565654	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:7565653_7565654CC>TT	uc003mxp.1	+	7	1118_1119	c.839_840CC>TT	c.(838-840)TCC>TTT	p.S280F	DSP_uc003mxq.1_Missense_Mutation_p.S280F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	280	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CAGGCCACGTCCAGGGAGATCA	0.515													24	65					0	0	0.004672	0	0
DSP	1832	broad.mit.edu	37	6	7569544	7569544	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:7569544G>A	uc003mxp.1	+	12	1824	c.1545G>A	c.(1543-1545)CCG>CCA	p.P515P	DSP_uc003mxq.1_Silent_p.P515P	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	515	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCCTCCTCCGAACCCACTGG	0.577													71	62					0	0	0.014410	0	0
DSP	1832	broad.mit.edu	37	6	7580541	7580541	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:7580541C>A	uc003mxp.1	+	23	4397	c.4118C>A	c.(4117-4119)ACC>AAC	p.T1373N	DSP_uc003mxq.1_Intron	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	1373	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATCAACATCACCAAGACCACC	0.448													36	86					2.42023e-17	2.48906e-17	0.003271	1	0
DSP	1832	broad.mit.edu	37	6	7583978	7583978	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:7583978C>T	uc003mxp.1	+	24	6762	c.6483C>T	c.(6481-6483)TCC>TCT	p.S2161S	DSP_uc003mxq.1_Silent_p.S1562S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2161	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TGTATCGATCCCTGAATGATC	0.483													24	79					0	0	0.003954	0	0
DSP	1832	broad.mit.edu	37	6	7584254	7584254	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:7584254C>T	uc003mxp.1	+	24	7038	c.6759C>T	c.(6757-6759)TTC>TTT	p.F2253F	DSP_uc003mxq.1_Silent_p.F1654F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2253	Plectin 7.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TTAAGGACTTCCTCCAGGGTT	0.443													49	36					0	0	0.013114	0	0
PHACTR1	221692	broad.mit.edu	37	6	13053619	13053620	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:13053619_13053620GG>AA	uc010jpc.2	+	5	605_606	c.273_274GG>AA	c.(271-276)GCGGCG>GCAACG	p.A92T	PHACTR1_uc011dir.1_Missense_Mutation_p.A92T|PHACTR1_uc003nag.1_Missense_Mutation_p.A92T|PHACTR1_uc003nah.1_Missense_Mutation_p.A92T	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	92						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			AGAGGCTGGCGGCGATGCGTTC	0.5													47	50					0	0	0.004672	0	0
HIST1H4G	8369	broad.mit.edu	37	6	26247052	26247052	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:26247052A>G	uc003nhf.2	-	1	154	c.154T>C	c.(154-156)TAT>CAT	p.Y52H		NM_003547	NP_003538	Q99525	H4G_HUMAN	histone cluster 1, H4g	52					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				GTCTCCTCATAAATGAGGCCC	0.572													34	29					0	0	0.013726	0	0
OR2W1	26692	broad.mit.edu	37	6	29012249	29012249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:29012249C>T	uc003nlw.2	-	1	704	c.704G>A	c.(703-705)CGA>CAA	p.R235Q		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CATTGCTTTTCGCTGGCTTGC	0.408													120	85					0	0	0.014410	0	0
OR2J2	26707	broad.mit.edu	37	6	29142225	29142225	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:29142225G>A	uc011dlm.1	+	1	915	c.813G>A	c.(811-813)CAG>CAA	p.Q271Q		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTCCTGATCAGGGCAAGTTCA	0.433													100	78					0	0	0.014410	0	0
GABBR1	2550	broad.mit.edu	37	6	29574771	29574771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:29574771G>A	uc003nmt.3	-	18	2456	c.2120C>T	c.(2119-2121)CCC>CTC	p.P707L	GABBR1_uc003nmp.3_Missense_Mutation_p.P590L|GABBR1_uc003nms.3_Missense_Mutation_p.P590L|GABBR1_uc003nmu.3_Missense_Mutation_p.P645L|GABBR1_uc011dlr.1_Missense_Mutation_p.P530L	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	707	Cytoplasmic (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	CAGCTTCCAGGGTTCCAGAGT	0.587													31	74					0	0	0.012213	0	0
C6orf134	79969	broad.mit.edu	37	6	30610592	30610592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:30610592C>T	uc003nqu.2	+	10	822	c.772C>T	c.(772-774)CGC>TGC	p.R258C	C6orf134_uc003nqr.3_Missense_Mutation_p.R258C|C6orf134_uc003rdc.2_Missense_Mutation_p.R258C|C6orf134_uc003nqs.3_Missense_Mutation_p.R235C|C6orf134_uc003rdd.2_Missense_Mutation_p.R235C|C6orf134_uc003nqt.2_Intron|C6orf134_uc011dmm.1_Missense_Mutation_p.R223C|C6orf134_uc003nqv.2_Missense_Mutation_p.R246C	NM_024909	NP_079185	Q5SQI0	ATAT_HUMAN	hypothetical protein LOC79969 isoform 2	258							tubulin N-acetyltransferase activity				0						CAGGGCCCCTCGCCGCGCCAC	0.607													20	22					0	0	0.010504	0	0
DDR1	780	broad.mit.edu	37	6	30862330	30862331	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:30862330_30862331CC>TT	uc003nrr.2	+	12	1654_1655	c.1395_1396CC>TT	c.(1393-1398)GTCCCT>GTTTCT	p.P466S	DDR1_uc010jse.2_Missense_Mutation_p.P466S|DDR1_uc003nrq.2_Missense_Mutation_p.P466S|DDR1_uc003nrs.2_Missense_Mutation_p.P466S|DDR1_uc003nrt.2_Missense_Mutation_p.P466S|DDR1_uc011dms.1_Missense_Mutation_p.P484S|DDR1_uc003nru.2_Missense_Mutation_p.P466S|DDR1_uc003nrv.2_Missense_Mutation_p.P466S|DDR1_uc003nrw.1_Intron|DDR1_uc003nry.1_RNA|DDR1_uc003nrx.1_Intron|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	466	Cytoplasmic (Potential).				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	ACCTCTCTGTCCCTGGGGACAC	0.609													86	49					0	0	0.004672	0	0
DPCR1	135656	broad.mit.edu	37	6	30919831	30919832	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:30919831_30919832CC>TT	uc003nsg.2	+	2	3590_3591	c.3590_3591CC>TT	c.(3589-3591)ACC>ATT	p.T1197I		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	321	Extracellular (Potential).|Thr-rich.					integral to membrane					0						ACCATATGCACCAAAGGGAAAA	0.47													58	54					0	0	0.004672	0	0
BAT2	7916	broad.mit.edu	37	6	31599457	31599457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:31599457C>T	uc003nvb.3	+	16	3256	c.3007C>T	c.(3007-3009)CTT>TTT	p.L1003F	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.L1003F	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1003	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						CAATGGAAATCTTTCCCCTGC	0.592													12	20					0	0	0.010729	0	0
BAT3	7917	broad.mit.edu	37	6	31607321	31607322	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:31607321_31607322GG>AA	uc003nvg.3	-	24	3572_3573	c.3258_3259CC>TT	c.(3256-3261)AGCCGG>AGTTGG	p.R1087W	BAT3_uc003nvf.3_Missense_Mutation_p.R1081W|BAT3_uc003nvh.3_Missense_Mutation_p.R1081W|BAT3_uc003nvi.3_Missense_Mutation_p.R1081W|BAT3_uc011dnw.1_Intron|BAT3_uc011dnx.1_Intron	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	1087					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						TCCAGGTCCCGGCTCAGGCTCT	0.658													119	81					0	0	0.004672	0	0
TNXB	7148	broad.mit.edu	37	6	32023718	32023718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:32023718C>T	uc003nzl.2	-	24	8579	c.8377G>A	c.(8377-8379)GGC>AGC	p.G2793S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2851	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGCTCCAGGCCCCCCACGGTG	0.672													75	81					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32037435	32037435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:32037435C>T	uc003nzl.2	-	15	5684	c.5482G>A	c.(5482-5484)GAG>AAG	p.E1828K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1910	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACGCTGACCTCCCTGAGGCTG	0.667													37	79					0	0	0.004289	0	0
TNXB	7148	broad.mit.edu	37	6	32062967	32062967	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:32062967C>T	uc003nzl.2	-	4	2446	c.2244G>A	c.(2242-2244)GAG>GAA	p.E748E		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGTTGGCACCTCTGCCCAAG	0.562													13	35					0	0	0.002450	0	0
ATF6B	1388	broad.mit.edu	37	6	32083520	32083520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:32083520G>A	uc003nzn.2	-	18	2141	c.2108C>T	c.(2107-2109)CCC>CTC	p.P703L	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Missense_Mutation_p.P700L	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	703	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGAGGTCAGGGATGATTGAG	0.622													29	156					0	0	0.010818	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33052830	33052830	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:33052830C>T	uc003ocu.1	+	3	527	c.468C>T	c.(466-468)GTC>GTT	p.V156V	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Silent_p.V155V|HLA-DPB1_uc011dqq.1_Silent_p.V52V	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	156	Beta-2.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						GCATTCAAGTCCGATGGTTCC	0.552													80	72					0	0	0.014410	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333946	33333946	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:33333946G>A	uc003shx.2	-	1	194	c.60C>T	c.(58-60)GCC>GCT	p.A20A		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AAATAACCACGGCCGTTTCCC	0.577													26	72					0	0	0.004656	0	0
GRM4	2914	broad.mit.edu	37	6	34024435	34024435	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:34024435T>A	uc003oir.3	-	5	1224	c.1054A>T	c.(1054-1056)ACG>TCG	p.T352S	GRM4_uc011dsn.1_Intron|GRM4_uc010jvh.2_Missense_Mutation_p.T352S|GRM4_uc010jvi.2_Missense_Mutation_p.T44S|GRM4_uc003oio.2_Missense_Mutation_p.T44S|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.T212S|GRM4_uc003oiq.2_Missense_Mutation_p.T219S|GRM4_uc011dsm.1_Missense_Mutation_p.T183S	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	352	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TTGTCCAGCGTGCGGCTGGAG	0.652													7	22					0	0	0.004482	0	0
PI16	221476	broad.mit.edu	37	6	36929703	36929703	+	Missense_Mutation	SNP	C	T	T	rs139815357	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:36929703C>T	uc003ona.2	+	4	873	c.545C>T	c.(544-546)CCG>CTG	p.P182L	PI16_uc003omz.1_Missense_Mutation_p.P182L|PI16_uc003onb.2_Missense_Mutation_p.P182L|PI16_uc011dts.1_5'UTR	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	182	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						GAGGGGACTCCGTGCTCCCAA	0.642													35	115					0	0	0.005524	0	0
FGD2	221472	broad.mit.edu	37	6	36976693	36976693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:36976693C>T	uc010jwp.1	+	2	323	c.152C>T	c.(151-153)CCA>CTA	p.P51L	FGD2_uc003onf.2_Missense_Mutation_p.P51L|FGD2_uc011dtu.1_Missense_Mutation_p.P51L|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	51					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						TCCCCAGGACCACGGGAGAAG	0.632													61	48					0	0	0.014410	0	0
DNAH8	1769	broad.mit.edu	37	6	38891859	38891859	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:38891859G>A	uc003ooe.1	+	71	10832	c.10232G>A	c.(10231-10233)TGG>TAG	p.W3411*	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AAAGATCAATGGGAAATGGAG	0.393													23	99					0	0	0.014323	0	0
HSP90AB1	3326	broad.mit.edu	37	6	44217832	44217832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:44217832C>T	uc003oxa.1	+	5	673	c.589C>T	c.(589-591)CGG>TGG	p.R197W	HSP90AB1_uc011dvr.1_Missense_Mutation_p.R187W|HSP90AB1_uc003oxb.1_Missense_Mutation_p.R197W|HSP90AB1_uc011dvs.1_Missense_Mutation_p.R17W|HSP90AB1_uc003oxc.1_5'UTR	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	197					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGAAGAGAGGCGGGTCAAAGA	0.433													60	94					0	0	0.014410	0	0
TCTE1	202500	broad.mit.edu	37	6	44253959	44253959	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:44253959G>A	uc003oxi.2	-	3	744	c.588C>T	c.(586-588)TTC>TTT	p.F196F	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	196										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCGGCGGAAGGAACTGATCGA	0.647													17	54					0	0	0.012319	0	0
TDRD6	221400	broad.mit.edu	37	6	46656539	46656539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:46656539C>T	uc003oyj.2	+	1	674	c.674C>T	c.(673-675)CCG>CTG	p.P225L	TDRD6_uc010jze.2_Missense_Mutation_p.P219L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	225					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TCCGGGGTCCCGGTTCTCTCG	0.657													38	27					0	0	0.004878	0	0
GPR110	266977	broad.mit.edu	37	6	46991839	46991840	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:46991839_46991840GG>AA	uc003oyt.2	-	5	590_591	c.391_392CC>TT	c.(391-393)CCA>TTA	p.P131L	GPR110_uc011dwl.1_5'UTR|GPR110_uc003oyu.1_Missense_Mutation_p.P131L	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	131	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						TTCACAGCTTGGGAGTGCTCCA	0.52													38	31					0	0	0.004672	0	0
GPR111	222611	broad.mit.edu	37	6	47650308	47650308	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:47650308C>T	uc010jzj.1	+	6	2014	c.2013C>T	c.(2011-2013)ATC>ATT	p.I671I	GPR111_uc010jzk.1_Silent_p.I603I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	671	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CCACTGTCATCGATGACAGAT	0.493													25	71					0	0	0.004656	0	0
CRISP2	7180	broad.mit.edu	37	6	49668428	49668428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:49668428C>T	uc003ozq.2	-	5	392	c.136G>A	c.(136-138)GAA>AAA	p.E46K	CRISP2_uc003ozl.2_Missense_Mutation_p.E46K|CRISP2_uc003ozn.2_Missense_Mutation_p.E46K|CRISP2_uc003ozr.2_Missense_Mutation_p.E46K|CRISP2_uc003ozo.2_Missense_Mutation_p.E46K|CRISP2_uc003ozm.2_Missense_Mutation_p.E46K|CRISP2_uc003ozp.2_Missense_Mutation_p.E46K	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	46						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TTCCTTAGTTCATTGTGTTTA	0.413													61	37					0	0	0.014410	0	0
CRISP3	10321	broad.mit.edu	37	6	49696553	49696553	+	Missense_Mutation	SNP	C	T	T	rs113164514		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:49696553C>T	uc003ozs.2	-	8	643	c.628G>A	c.(628-630)GAA>AAA	p.E210K		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	210					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			TAGAGATCTTCGTACTTGCAA	0.358													59	50					0	0	0.014410	0	0
KLHL31	401265	broad.mit.edu	37	6	53519241	53519241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:53519241C>T	uc003pcb.3	-	2	971	c.830G>A	c.(829-831)AGA>AAA	p.R277K		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	277					regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					TTGCATCATTCTTGGTACGGA	0.408													168	137					0	0	0.014410	0	0
BAI3	577	broad.mit.edu	37	6	70071218	70071218	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:70071218G>T	uc003pev.3	+	29	4501	c.4053G>T	c.(4051-4053)ATG>ATT	p.M1351I	BAI3_uc010kak.2_Missense_Mutation_p.M1351I|BAI3_uc011dxx.1_Missense_Mutation_p.M557I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1351	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AATTCAATATGAATCCCCCTG	0.428													35	37					9.17885e-22	9.46901e-22	0.003271	1	0
COL19A1	1310	broad.mit.edu	37	6	70916922	70916922	+	Missense_Mutation	SNP	C	T	T	rs143391424	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:70916922C>T	uc003pfc.1	+	51	3490	c.3373C>T	c.(3373-3375)CCA>TCA	p.P1125S		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	1125					cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						AAGATGTAACCCAGAAGATTG	0.517													101	70					0	0	0.014410	0	0
PHIP	55023	broad.mit.edu	37	6	79671440	79671440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:79671440G>A	uc003pir.2	-	31	3849	c.3623C>T	c.(3622-3624)ACA>ATA	p.T1208I	PHIP_uc003piq.2_Missense_Mutation_p.T232I|PHIP_uc011dyp.1_Missense_Mutation_p.T1207I|PHIP_uc003pio.3_Missense_Mutation_p.T94I	NM_017934	NP_060404	Q8WWQ0	PHIP_HUMAN	pleckstrin homology domain interacting protein	1208	Bromo 1.				insulin receptor signaling pathway|negative regulation of apoptosis|positive regulation of cell proliferation|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis	nucleus	insulin receptor binding			large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	6		all_cancers(76;0.00125)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.219)		BRCA - Breast invasive adenocarcinoma(397;0.231)		TTGTTTAATTGTACTTAGATC	0.403													13	14					0	0	0.001855	0	0
BACH2	60468	broad.mit.edu	37	6	90660443	90660444	+	Missense_Mutation	DNP	GG	AA	AA	rs144153232		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:90660443_90660444GG>AA	uc011eab.1	-	7	2190_2191	c.1381_1382CC>TT	c.(1381-1383)CCG>TTG	p.P461L	BACH2_uc003pnw.2_Missense_Mutation_p.P461L|BACH2_uc010kch.2_Missense_Mutation_p.P461L	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	461						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CTTTGGCACCGGCTCAGAGAGG	0.619													29	18					0	0	0.004672	0	0
WISP3	8838	broad.mit.edu	37	6	112386017	112386017	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:112386017C>T	uc003pvm.2	+	4	516	c.406C>T	c.(406-408)CAG>TAG	p.Q136*	WISP3_uc003pvn.2_RNA|WISP3_uc003pvo.2_Nonsense_Mutation_p.Q154*	NM_003880	NP_003871	O95389	WISP3_HUMAN	WNT1 inducible signaling pathway protein 3	136					cell-cell signaling|regulation of cell growth|signal transduction	extracellular region|soluble fraction	growth factor activity|insulin-like growth factor binding				0		all_cancers(87;0.000196)|Acute lymphoblastic leukemia(125;1.18e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0283)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0827)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		CCAAGTGTTTCAGCCCAACCC	0.488													58	37					0	0	0.014410	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597029	136597029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:136597029G>A	uc003qgx.1	-	5	1887	c.1634C>T	c.(1633-1635)CCT>CTT	p.P545L	BCLAF1_uc003qgw.1_Missense_Mutation_p.P372L|BCLAF1_uc003qgy.1_Missense_Mutation_p.P543L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.P543L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	545					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTTGACTTCAGGACGGTGAGA	0.438													43	180					0	0	0.008740	0	0
SYNE1	23345	broad.mit.edu	37	6	152529294	152529294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:152529294C>T	uc010kiw.2	-	125	23239	c.22637G>A	c.(22636-22638)GGA>GAA	p.G7546E	SYNE1_uc010kiv.2_Missense_Mutation_p.G2070E|SYNE1_uc003qos.3_Missense_Mutation_p.G2070E|SYNE1_uc003qot.3_Missense_Mutation_p.G7475E|SYNE1_uc003qou.3_Missense_Mutation_p.G7546E|SYNE1_uc003qor.3_Missense_Mutation_p.G446E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7546	HAT 11.|Cytoplasmic (Potential).|Spectrin 25.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCGAATCACTCCCTGCCATTG	0.468										HNSCC(10;0.0054)			20	21					0	0	0.003330	0	0
SYNE1	23345	broad.mit.edu	37	6	152792854	152792854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:152792854C>T	uc010kiw.2	-	16	2112	c.1510G>A	c.(1510-1512)GAA>AAA	p.E504K	SYNE1_uc003qot.3_Missense_Mutation_p.E511K|SYNE1_uc003qou.3_Missense_Mutation_p.E504K|SYNE1_uc010kjb.1_Missense_Mutation_p.E487K|SYNE1_uc003qpa.1_Missense_Mutation_p.E504K|SYNE1_uc003qox.1_Missense_Mutation_p.E20K|SYNE1_uc003qoz.2_Intron|SYNE1_uc003qoy.2_Missense_Mutation_p.E71K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	504	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCTAAAAATTCCATTTTCATT	0.378										HNSCC(10;0.0054)			33	30					0	0	0.003755	0	0
OPRM1	4988	broad.mit.edu	37	6	154412374	154412374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:154412374C>T	uc003qpr.2	+	3	1168	c.931C>T	c.(931-933)CCA>TCA	p.P311S	OPRM1_uc011efc.1_Missense_Mutation_p.P230S|OPRM1_uc011efd.1_Missense_Mutation_p.P211S|OPRM1_uc011efe.1_Missense_Mutation_p.P404S|OPRM1_uc003qpn.2_Missense_Mutation_p.P311S|OPRM1_uc003qpo.1_Missense_Mutation_p.P311S|OPRM1_uc011eff.1_Missense_Mutation_p.P311S|OPRM1_uc011efg.1_Missense_Mutation_p.P311S|OPRM1_uc011efh.1_Missense_Mutation_p.P311S|OPRM1_uc003qpq.1_Missense_Mutation_p.P311S|OPRM1_uc003qpt.1_Missense_Mutation_p.P311S|OPRM1_uc011efi.1_Missense_Mutation_p.P311S|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Missense_Mutation_p.P211S|OPRM1_uc003qpu.2_Missense_Mutation_p.P211S	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	311	Extracellular (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	GGTTACAATCCCAGAAACTAC	0.468													43	29					0	0	0.006999	0	0
TIAM2	26230	broad.mit.edu	37	6	155451257	155451258	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:155451257_155451258GG>AA	uc003qqb.2	+	6	2173_2174	c.900_901GG>AA	c.(898-903)CGGGAA>CGAAAA	p.E301K	TIAM2_uc003qqe.2_Missense_Mutation_p.E301K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	301					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CCTCCCTCCGGGAACTGTACAA	0.594													28	12					0	0	0.004672	0	0
ARID1B	57492	broad.mit.edu	37	6	157469767	157469767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:157469767C>T	uc003qqn.2	+	8	2500	c.2348C>T	c.(2347-2349)TCC>TTC	p.S783F	ARID1B_uc003qqo.2_Missense_Mutation_p.S796F|ARID1B_uc003qqp.2_Missense_Mutation_p.S783F|ARID1B_uc003qqq.1_Missense_Mutation_p.S225F|ARID1B_uc010kjl.2_5'UTR	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	841					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GGTAACTACTCCAGACCCCCA	0.478													25	23					0	0	0.003954	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166883354	166883354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:166883354G>A	uc003qvb.1	-	11	1166	c.947C>T	c.(946-948)CCC>CTC	p.P316L	RPS6KA2_uc011ego.1_Missense_Mutation_p.P227L|RPS6KA2_uc010kkl.1_Missense_Mutation_p.P227L|RPS6KA2_uc003qvc.1_Missense_Mutation_p.P324L|RPS6KA2_uc003qvd.1_Missense_Mutation_p.P341L	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	316	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		CACAAAGAAGGGATGGCGCTT	0.507													18	14					0	0	0.007413	0	0
TCP10L2	401285	broad.mit.edu	37	6	167595307	167595307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:167595307C>T	uc010kkp.2	+	8	1096	c.965C>T	c.(964-966)CCA>CTA	p.P322L		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	322											0						AAACGACATCCAAATGGCAAG	0.532													15	14					0	0	0.003163	0	0
TCP10	6953	broad.mit.edu	37	6	167786754	167786754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:167786754G>A	uc003qvv.1	-	8	1096	c.884C>T	c.(883-885)CCA>CTA	p.P295L	TCP10_uc003qvu.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	322						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		CTTGCCCTTTGGATGTCGTTT	0.542													8	43					0	0	0.013537	0	0
SDK1	221935	broad.mit.edu	37	7	4185359	4185359	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:4185359C>T	uc003smx.2	+	29	4373	c.4234C>T	c.(4234-4236)CAG>TAG	p.Q1412*	SDK1_uc010kso.2_Nonsense_Mutation_p.Q688*|SDK1_uc003smy.2_5'UTR	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1412	Fibronectin type-III 8.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TGCAGGGTACCAGATTGCCTA	0.672													23	87					0	0	0.014323	0	0
RADIL	55698	broad.mit.edu	37	7	4855859	4855859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:4855859C>T	uc003snj.1	-	8	2139	c.1966G>A	c.(1966-1968)GGC>AGC	p.G656S	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_Missense_Mutation_p.G161S|RADIL_uc011jwc.1_Missense_Mutation_p.G416S|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	656	Dilute.				cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		AGGCCCTCACCCCTGTCGAGG	0.672													19	47					0	0	0.007413	0	0
PAPOLB	56903	broad.mit.edu	37	7	4899683	4899683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:4899683C>T	uc003snk.2	-	1	1943	c.1759G>A	c.(1759-1761)GGG>AGG	p.G587R	RADIL_uc003sng.1_Intron|RADIL_uc011jwd.1_Intron|RADIL_uc003snj.1_Intron	NM_020144	NP_064529	Q9NRJ5	PAPOB_HUMAN	poly(A) polymerase beta (testis specific)	586					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.089)|OV - Ovarian serous cystadenocarcinoma(56;2.06e-14)		AATGCAACCCCTGAACTTTCA	0.463													22	66					0	0	0.012319	0	0
DAGLB	221955	broad.mit.edu	37	7	6465718	6465718	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:6465718G>A	uc003sqa.2	-	7	1127	c.957C>T	c.(955-957)GAC>GAT	p.D319D	DAGLB_uc011jwt.1_Silent_p.D133D|DAGLB_uc011jwu.1_Silent_p.D190D|DAGLB_uc003sqb.2_Silent_p.D38D|DAGLB_uc003sqc.2_Silent_p.D38D|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Silent_p.D278D|DAGLB_uc011jww.1_RNA	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	319	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		CTCCGACCAAGTCATAGTCTG	0.532													32	82					0	0	0.012213	0	0
ZNF12	7559	broad.mit.edu	37	7	6730593	6730593	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:6730593G>A	uc003sqt.1	-	5	2534	c.1980C>T	c.(1978-1980)CCC>CCT	p.P660P	ZNF12_uc011jxa.1_Silent_p.P498P|ZNF12_uc003sqs.1_Silent_p.P622P	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	660					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		TACACTCATAGGGTTTCTCTC	0.388													24	69					0	0	0.003330	0	0
ICA1	3382	broad.mit.edu	37	7	8258122	8258122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:8258122C>T	uc003srm.2	-	6	459	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	ICA1_uc010ktr.2_Missense_Mutation_p.R131Q|ICA1_uc003srl.2_Missense_Mutation_p.R119Q|ICA1_uc003srn.3_Missense_Mutation_p.R57Q|ICA1_uc003srp.3_Missense_Mutation_p.R130Q|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.R131Q|ICA1_uc003srr.2_Missense_Mutation_p.R130Q|ICA1_uc003sro.3_Missense_Mutation_p.R131Q|ICA1_uc011jxg.1_Missense_Mutation_p.R131Q|ICA1_uc003srs.1_Missense_Mutation_p.R131Q	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	131	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		CAAAGGATTTCGTAAGGCCAA	0.468													33	28					0	0	0.012213	0	0
ICA1	3382	broad.mit.edu	37	7	8268266	8268266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:8268266G>A	uc003srm.2	-	4	288	c.221C>T	c.(220-222)TCG>TTG	p.S74L	ICA1_uc010ktr.2_Missense_Mutation_p.S74L|ICA1_uc003srl.2_Missense_Mutation_p.S62L|ICA1_uc003srn.3_5'UTR|ICA1_uc003srp.3_Missense_Mutation_p.S73L|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.S74L|ICA1_uc003srr.2_Missense_Mutation_p.S73L|ICA1_uc003sro.3_Missense_Mutation_p.S74L|ICA1_uc011jxg.1_Missense_Mutation_p.S74L|ICA1_uc003srs.1_Missense_Mutation_p.S74L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	74	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		AATTGCTTTCGATAAGTCCAG	0.294													10	33					0	0	0.002450	0	0
DGKB	1607	broad.mit.edu	37	7	14188781	14188781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:14188781C>T	uc003ssz.2	-	25	2577	c.2390G>A	c.(2389-2391)AGG>AAG	p.R797K	DGKB_uc011jxt.1_Missense_Mutation_p.R778K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	797					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GTTTCTTGTCCTTTTGACGAG	0.383													64	74					0	0	0.014410	0	0
TMEM195	392636	broad.mit.edu	37	7	15427080	15427080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:15427080C>T	uc003stb.1	-	9	1078	c.908G>A	c.(907-909)GGA>GAA	p.G303E		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	303					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						TGGACCCCATCCCGGTCCCTT	0.388													46	139					0	0	0.013114	0	0
DNAH11	8701	broad.mit.edu	37	7	21583153	21583153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:21583153C>T	uc003svc.2	+	1	321	c.290C>T	c.(289-291)ACC>ATC	p.T97I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	97	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTGGAAAGCACCAGCCCGGCT	0.617									Kartagener_syndrome				5	10					0	0	0.001168	0	0
DNAH11	8701	broad.mit.edu	37	7	21789969	21789969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:21789969G>A	uc003svc.2	+	55	8979	c.8948G>A	c.(8947-8949)CGA>CAA	p.R2983Q		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2983	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCCAGGGTGCGACTACAGCTC	0.373									Kartagener_syndrome				13	13					0	0	0.004007	0	0
OSBPL3	26031	broad.mit.edu	37	7	24902874	24902874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:24902874G>A	uc003sxf.2	-	9	1220	c.815C>T	c.(814-816)TCG>TTG	p.S272L	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_Intron|OSBPL3_uc003sxg.2_Missense_Mutation_p.S272L|OSBPL3_uc003sxh.2_Intron|OSBPL3_uc003sxi.2_Intron|OSBPL3_uc003sxj.1_Missense_Mutation_p.S37L|OSBPL3_uc003sxk.1_Intron	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	272					lipid transport		lipid binding|protein binding			skin(1)	1						CCTCCTGTGCGATCTTTTTTC	0.458													38	82					0	0	0.006230	0	0
GHRHR	2692	broad.mit.edu	37	7	31013753	31013753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:31013753G>A	uc003tbx.2	+	7	799	c.751G>A	c.(751-753)GGG>AGG	p.G251R	GHRHR_uc003tbw.1_Missense_Mutation_p.G251R|GHRHR_uc003tby.2_Missense_Mutation_p.G187R|GHRHR_uc003tbz.2_Intron	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	251	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	CGCTGGCTGGGGTGAGCACTG	0.627													21	80					0	0	0.014323	0	0
ELMO1	9844	broad.mit.edu	37	7	36910028	36910028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:36910028C>T	uc003tfk.1	-	20	2182	c.1875G>A	c.(1873-1875)ATG>ATA	p.M625I	ELMO1_uc003tfi.1_Missense_Mutation_p.M145I|ELMO1_uc003tfj.1_Missense_Mutation_p.M145I|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Missense_Mutation_p.M529I|ELMO1_uc010kxg.1_Missense_Mutation_p.M625I	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	625	PH.				actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						CTTTCTCTTTCATATGAGGGC	0.448													28	77					0	0	0.013726	0	0
TXNDC3	51314	broad.mit.edu	37	7	37890311	37890311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:37890311G>A	uc003tfn.2	+	5	544	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	58	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TGAACTGAACGAAGACGAAAT	0.318									Kartagener_syndrome				26	95					0	0	0.006320	0	0
IKZF1	10320	broad.mit.edu	37	7	50450404	50450404	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:50450404C>T	uc003tow.3	+	6	756	c.588C>T	c.(586-588)TCC>TCT	p.S196S	IKZF1_uc003tox.3_Silent_p.S196S|IKZF1_uc003toy.3_Silent_p.S196S|IKZF1_uc011kck.1_Silent_p.S109S|IKZF1_uc003toz.3_Silent_p.S166S|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	196					cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				GGACGCACTCCGGTAGGTCCC	0.647			D		ALL								6	18					0	0	0.001168	0	0
SUMF2	25870	broad.mit.edu	37	7	56140715	56140715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:56140715C>T	uc003trv.2	+	3	338	c.307C>T	c.(307-309)CGG>TGG	p.R103W	PSPH_uc003trj.2_Intron|SUMF2_uc003tro.2_Missense_Mutation_p.R103W|SUMF2_uc011kcv.1_RNA|SUMF2_uc011kcw.1_Missense_Mutation_p.R103W|SUMF2_uc011kcx.1_Missense_Mutation_p.R103W|SUMF2_uc003trt.2_5'UTR|SUMF2_uc011kcy.1_Missense_Mutation_p.R103W|SUMF2_uc011kcz.1_Missense_Mutation_p.R103W|SUMF2_uc003tru.2_RNA|SUMF2_uc011kda.1_Intron|SUMF2_uc003trx.2_RNA	NM_001130069	NP_001123541	Q8NBJ7	SUMF2_HUMAN	sulfatase modifying factor 2 isoform e	84						endoplasmic reticulum lumen	metal ion binding			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GAAAAAGTATCGGACAGAAGC	0.478													18	64					0	0	0.008871	0	0
GUSB	2990	broad.mit.edu	37	7	65441055	65441055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:65441055G>A	uc003tun.2	-	5	935	c.859C>T	c.(859-861)CTC>TTC	p.L287F	GUSB_uc011kdt.1_Intron|GUSB_uc010kzw.1_Missense_Mutation_p.L120F	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	287					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						GGCCACCAGAGGCTGACACCT	0.532													45	45					0	0	0.014410	0	0
NSUN5	55695	broad.mit.edu	37	7	72718303	72718303	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:72718303G>A	uc003txw.2	-	7	894	c.858C>T	c.(856-858)TTC>TTT	p.F286F	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Silent_p.F286F|NSUN5_uc003txx.2_Silent_p.F248F|NSUN5_uc011kev.1_Silent_p.F286F	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	286	S-adenosyl-L-methionine binding.						methyltransferase activity				0		Lung NSC(55;0.163)				AGACCGCCAGGAAGTCCTCCT	0.602													12	46					0	0	0.001855	0	0
MLXIPL	51085	broad.mit.edu	37	7	73014012	73014012	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:73014012G>A	uc003tyn.1	-	8	963	c.915C>T	c.(913-915)AAC>AAT	p.N305N	MLXIPL_uc003tyj.1_5'Flank|MLXIPL_uc003tyk.1_Silent_p.N305N|MLXIPL_uc003tyl.1_Silent_p.N305N|MLXIPL_uc003tym.1_Silent_p.N305N|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Silent_p.N212N|MLXIPL_uc003tyq.1_Silent_p.N47N	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	305					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				GGAGGCGGGAGTTGGTAAAGA	0.607													54	58					0	0	0.014410	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279510	73279510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:73279510C>T	uc003tzk.2	+	2	296	c.260C>T	c.(259-261)CCC>CTC	p.P87L	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	87	Helical; (Potential).					integral to membrane				breast(1)	1		Lung NSC(55;0.159)				ATACAGGTCCCCGTATGGCTG	0.692													64	50					0	0	0.014410	0	0
ELN	2006	broad.mit.edu	37	7	73474218	73474218	+	Silent	SNP	T	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:73474218T>C	uc003tzw.2	+	23	1526	c.1435T>C	c.(1435-1437)TTA>CTA	p.L479L	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Silent_p.L473L|ELN_uc003tzz.2_Silent_p.L392L|ELN_uc003tzo.2_Silent_p.L440L|ELN_uc003tzp.2_Silent_p.L384L|ELN_uc003tzq.2_Silent_p.L337L|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Silent_p.L454L|ELN_uc003tzt.2_Silent_p.L478L|ELN_uc003tzu.2_Silent_p.L459L|ELN_uc003tzv.2_Silent_p.L444L|ELN_uc003tzx.2_Silent_p.L463L|ELN_uc011kff.1_Silent_p.L473L|ELN_uc003tzy.2_Silent_p.L449L	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	502	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TCTTGCAGGGTTAGTTCCTGG	0.408			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						87	258					0	0	0.014410	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73944161	73944161	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:73944161C>T	uc003uaq.2	+	9	1581	c.1188C>T	c.(1186-1188)ATC>ATT	p.I396I	GTF2IRD1_uc010lbq.2_Silent_p.I428I|GTF2IRD1_uc003uap.2_Silent_p.I396I|GTF2IRD1_uc003uar.1_Silent_p.I396I	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	396	GTF2I-like 2.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CGGACAAGATCCCCTTCAAGC	0.602													31	31					0	0	0.012213	0	0
UPK3B	80761	broad.mit.edu	37	7	76144563	76144563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:76144563G>A	uc003ufq.2	+	4	1183	c.958G>A	c.(958-960)GAG>AAG	p.E320K	UPK3B_uc003ufo.2_3'UTR|UPK3B_uc010ldk.1_Missense_Mutation_p.E265K	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	320	Cytoplasmic (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				GGGGCGCTGGGAGTGAGTGCA	0.687													4	8					0	0	0.009096	0	0
CCDC146	57639	broad.mit.edu	37	7	76891536	76891536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:76891536G>A	uc003uga.2	+	9	1212	c.1085G>A	c.(1084-1086)CGA>CAA	p.R362Q	CCDC146_uc010ldp.2_Missense_Mutation_p.R108Q	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	362										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CGAGATTTTCGAAATTTAAGA	0.418													25	79					0	0	0.003954	0	0
PCLO	27445	broad.mit.edu	37	7	82784258	82784258	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:82784258G>A	uc003uhx.2	-	2	1988	c.1699C>T	c.(1699-1701)CTG>TTG	p.L567L	PCLO_uc003uhv.2_Silent_p.L567L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	513	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGGCTGCAGAGGTTTTCCA	0.512													298	266					0	0	0.014410	0	0
GRM3	2913	broad.mit.edu	37	7	86416311	86416311	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:86416311C>T	uc003uid.2	+	3	2302	c.1203C>T	c.(1201-1203)GCC>GCT	p.A401A	GRM3_uc010lef.2_Silent_p.A399A|GRM3_uc010leg.2_Silent_p.A273A|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	401	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATGCCATGGCCCACGCTTTGC	0.522													100	94					0	0	0.014410	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965962	88965963	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:88965962_88965963CT>TA	uc011khi.1	+	4	4204_4205	c.3666_3667CT>TA	c.(3664-3669)TCCTTA>TCTATA	p.L1223I		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1223						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TTTCTGCTTCCTTAAGTTCTCA	0.465										HNSCC(36;0.09)			48	173					0	0	0.004672	0	0
STEAP1	26872	broad.mit.edu	37	7	89793801	89793801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:89793801G>A	uc003ujx.2	+	5	973	c.773G>A	c.(772-774)GGA>GAA	p.G258E		NM_012449	NP_036581	Q9UHE8	STEA1_HUMAN	six transmembrane epithelial antigen of the	258	Ferric oxidoreductase.|Helical; (Potential).				electron transport chain|ion transport|iron ion homeostasis	cell-cell junction|endosome membrane|integral to plasma membrane	channel activity|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	all_hematologic(106;0.112)					AGCAAGCTAGGAATTGTTTCC	0.368													121	88					0	0	0.014410	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761935	92761935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:92761935G>A	uc003umh.1	-	5	4566	c.3350C>T	c.(3349-3351)TCC>TTC	p.S1117F	SAMD9L_uc003umj.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umi.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S1117F|SAMD9L_uc003umk.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S1117F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S1117F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1117										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAAATATAGGAATTTTTAGG	0.383													101	116					0	0	0.014410	0	0
COL1A2	1278	broad.mit.edu	37	7	94040251	94040251	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:94040251C>T	uc003ung.1	+	22	1719	c.1248C>T	c.(1246-1248)GTC>GTT	p.V416V	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	416					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GAGCTGGCGTCATGGTAAGCT	0.458										HNSCC(75;0.22)			58	82					0	0	0.014410	0	0
TRRAP	8295	broad.mit.edu	37	7	98507808	98507808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:98507808C>T	uc003upp.2	+	15	1689	c.1480C>T	c.(1480-1482)CCT>TCT	p.P494S	TRRAP_uc011kis.1_Missense_Mutation_p.P494S|TRRAP_uc003upr.2_Missense_Mutation_p.P186S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	494	Pro-rich.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCCTGCAGCTCCTGGCCCTGC	0.512													65	62					0	0	0.014410	0	0
ZNF498	221785	broad.mit.edu	37	7	99227005	99227005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:99227005C>T	uc003url.1	+	8	1324	c.997C>T	c.(997-999)CCC>TCC	p.P333S	ZNF498_uc003urm.1_Missense_Mutation_p.P169S|ZNF498_uc010lge.1_Missense_Mutation_p.P169S|ZNF498_uc003urn.2_Intron|ZNF498_uc010lgf.1_Missense_Mutation_p.P261S|ZNF498_uc003uro.1_Missense_Mutation_p.P117S	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	333					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					CGGTGCCATCCCCCTGCCTGA	0.632													23	50					0	0	0.014323	0	0
C7orf51	222950	broad.mit.edu	37	7	100086303	100086303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:100086303C>T	uc003uvd.1	+	4	1118	c.959C>T	c.(958-960)CCT>CTT	p.P320L	C7orf51_uc003uve.1_Missense_Mutation_p.P102L	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	320	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AAGACCACTCCTTGTGAAATC	0.692													40	86					0	0	0.005524	0	0
C7orf51	222950	broad.mit.edu	37	7	100091298	100091298	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:100091298C>T	uc003uvd.1	+	7	2457	c.2298C>T	c.(2296-2298)CCC>CCT	p.P766P	C7orf51_uc003uve.1_Silent_p.P549P	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	766										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGCCTCTGCCCCTGCCGCCCC	0.731													17	4					0	0	0.006122	0	0
TRIP6	7205	broad.mit.edu	37	7	100466486	100466486	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:100466486C>T	uc003uww.2	+	4	903	c.733C>T	c.(733-735)CAG>TAG	p.Q245*	TRIP6_uc010lhk.1_RNA	NM_003302	NP_003293	Q15654	TRIP6_HUMAN	thyroid receptor-interacting protein 6	245					focal adhesion assembly|positive regulation of cell migration|regulation of transcription, DNA-dependent|release of cytoplasmic sequestered NF-kappaB|transcription, DNA-dependent	cytoplasm|cytoskeleton|focal adhesion|nucleus	identical protein binding|interleukin-1 receptor binding|kinase binding|thyroid hormone receptor binding|zinc ion binding			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)					GCACGGGCCCCAGGTGAGCCC	0.597													7	39					0	0	0.001984	0	0
MUC17	140453	broad.mit.edu	37	7	100681427	100681427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:100681427C>T	uc003uxp.1	+	3	6783	c.6730C>T	c.(6730-6732)CCT>TCT	p.P2244S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2244	Extracellular (Potential).|35.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTCAGCAACTCCTGTTGACAC	0.498													357	351					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100687065	100687065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:100687065C>T	uc003uxp.1	+	3	12421	c.12368C>T	c.(12367-12369)CCC>CTC	p.P4123L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4123	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAGAGCAACCCCACCTCAACT	0.393													51	72					0	0	0.014410	0	0
DPY19L2P2	349152	broad.mit.edu	37	7	102895234	102895234	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:102895234G>A	uc003vbh.3	-	9	2419	c.228C>T	c.(226-228)TAC>TAT	p.Y76Y	DPY19L2P2_uc003vbg.3_RNA|DPY19L2P2_uc010lit.2_RNA	NR_003561				RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						CTTACCTTAGGTATGTTCCAT	0.318													6	51					0	0	0.001168	0	0
ASZ1	136991	broad.mit.edu	37	7	117025764	117025764	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:117025764C>T	uc003vjb.2	-	5	603	c.540G>A	c.(538-540)GAG>GAA	p.E180E	ASZ1_uc011kno.1_Silent_p.E180E|ASZ1_uc011knp.1_Intron	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	180					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TGTAACCATTCTCATCCTGGG	0.358													23	71					0	0	0.003954	0	0
KCND2	3751	broad.mit.edu	37	7	119915728	119915728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:119915728G>A	uc003vjj.1	+	1	2007	c.1042G>A	c.(1042-1044)GGG>AGG	p.G348R		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	348					regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CGCAGAGAAGGGGTCTTCGGC	0.493													45	105					0	0	0.013114	0	0
C7orf58	79974	broad.mit.edu	37	7	120911433	120911434	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:120911433_120911434GG>AA	uc003vjq.3	+	22	3264_3265	c.2817_2818GG>AA	c.(2815-2820)ATGGGG>ATAAGG	p.939_940MG>IR		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	939_940						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CTATAACAATGGGGCGTTACAA	0.347													37	135					0	0	0.004672	0	0
HYAL4	23553	broad.mit.edu	37	7	123508985	123508985	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:123508985T>A	uc003vlc.2	+	3	1296	c.658T>A	c.(658-660)TAT>AAT	p.Y220N	HYAL4_uc011knz.1_Missense_Mutation_p.Y220N	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	220	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TTATTATTTATATCCTGATTG	0.428													24	79					0	0	0.003330	0	0
FLNC	2318	broad.mit.edu	37	7	128497214	128497214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:128497214C>T	uc003vnz.3	+	46	7813	c.7604C>T	c.(7603-7605)TCG>TTG	p.S2535L	FLNC_uc003voa.3_Missense_Mutation_p.S2502L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2535	Interaction with INPPL1.|Filamin 23.			S -> F (in Ref. 4; AAF80245).	cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AATGCCGGCTCGGGGGCCTTG	0.607													64	205					0	0	0.014410	0	0
MEST	4232	broad.mit.edu	37	7	130135275	130135275	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:130135275C>T	uc003vqg.2	+	2	310	c.93C>T	c.(91-93)ATC>ATT	p.I31I	MEST_uc003vqc.2_Silent_p.I22I|MEST_uc003vqd.2_Silent_p.I22I|MEST_uc003vqf.2_Silent_p.I22I|MEST_uc011kph.1_Silent_p.I31I|MEST_uc010lmg.2_Silent_p.I31I|uc011kpi.1_5'Flank|MIR335_hsa-mir-335|MI0000816_5'Flank	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	31	Helical; (Potential).				mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					ACCTGCACATCCCACCCCCTC	0.562													104	95					0	0	0.014410	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192469	132192469	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:132192469G>A	uc003vra.3	-	2	1213	c.984C>T	c.(982-984)GTC>GTT	p.V328V	PLXNA4_uc003vrc.2_Silent_p.V328V|PLXNA4_uc003vrb.2_Silent_p.V328V	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	328	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CATCTGGATGGACTCCAAGGG	0.592													48	29					0	0	0.014410	0	0
AKR1B1	231	broad.mit.edu	37	7	134134532	134134532	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:134134532G>A	uc003vrp.1	-	4	443	c.369C>T	c.(367-369)TTC>TTT	p.F123F	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	123					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	CATCCAATGGGAAAAATTCCT	0.468													125	113					0	0	0.014410	0	0
AKR1D1	6718	broad.mit.edu	37	7	137798460	137798460	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:137798460G>T	uc003vtz.2	+	8	949	c.880G>T	c.(880-882)GAA>TAA	p.E294*	AKR1D1_uc011kqe.1_Intron|AKR1D1_uc011kqf.1_Nonsense_Mutation_p.E253*|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	294					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TCTCACTGAAGAAGAAATGAA	0.408													34	44					1.90571e-15	1.9554e-15	0.004289	1	0
TRIM24	8805	broad.mit.edu	37	7	138255744	138255744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:138255744C>T	uc003vuc.2	+	11	2089	c.1874C>T	c.(1873-1875)CCG>CTG	p.P625L	TRIM24_uc003vub.2_Missense_Mutation_p.P591L	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	625					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						CCCTCTCTTCCGGATGTAAGT	0.308													120	115					0	0	0.014410	0	0
DENND2A	27147	broad.mit.edu	37	7	140301368	140301368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:140301368C>T	uc010lnj.2	-	1	975	c.830G>A	c.(829-831)GGA>GAA	p.G277E	DENND2A_uc011kre.1_RNA|DENND2A_uc010lnk.2_Missense_Mutation_p.G277E|DENND2A_uc003vvw.2_Missense_Mutation_p.G277E|DENND2A_uc003vvx.2_Missense_Mutation_p.G277E	NM_015689	NP_056504	Q9ULE3	DEN2A_HUMAN	DENN/MADD domain containing 2A	277										ovary(3)|breast(1)	4	Melanoma(164;0.00956)					GTCCCCTTCTCCGGCATGTTT	0.433													70	203					0	0	0.014410	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				60	55					0	0	0.014410	0	0
WEE2	494551	broad.mit.edu	37	7	141408767	141408767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:141408767C>T	uc003vwn.2	+	1	615	c.209C>T	c.(208-210)TCG>TTG	p.S70L	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	70					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					GACACATCTTCGGAAAAAGAC	0.517													107	120					0	0	0.014410	0	0
WEE2	494551	broad.mit.edu	37	7	141414204	141414204	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:141414204C>T	uc003vwn.2	+	2	944	c.538C>T	c.(538-540)CTT>TTT	p.L180F	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	180					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					AAGAGGAGATCTGTAAGTGCT	0.368													29	49					0	0	0.006320	0	0
PRSS37	136242	broad.mit.edu	37	7	141537845	141537845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:141537845G>A	uc003vws.1	-	3	617	c.245C>T	c.(244-246)CCC>CTC	p.P82L	PRSS37_uc011krk.1_Missense_Mutation_p.P69L|PRSS37_uc011krl.1_Missense_Mutation_p.P82L|PRSS37_uc003vwt.1_Missense_Mutation_p.P39L	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	82	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						GATCTGAATGGGGTTAATTGT	0.478													118	135					0	0	0.014410	0	0
MGAM	8972	broad.mit.edu	37	7	141731489	141731489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:141731489G>A	uc003vwy.2	+	13	1534	c.1480G>A	c.(1480-1482)GGA>AGA	p.G494R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	494	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GGTCTGGCCTGGACAAACTGT	0.358													43	115					0	0	0.010771	0	0
TRPV6	55503	broad.mit.edu	37	7	142569731	142569731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:142569731C>T	uc003wbx.1	-	15	2123	c.1907G>A	c.(1906-1908)AGG>AAG	p.R636K	TRPV6_uc003wbw.1_Missense_Mutation_p.R422K|TRPV6_uc010lou.1_Missense_Mutation_p.R507K	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	636	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GAGATCTTGCCTGTCTTCCAC	0.547													20	66					0	0	0.012319	0	0
C7orf34	135927	broad.mit.edu	37	7	142636823	142636823	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:142636823G>A	uc003wca.2	+	1	221	c.180G>A	c.(178-180)GGG>GGA	p.G60G		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	35						extracellular region					0	Melanoma(164;0.059)					CCAAAGATGGGAGCCAGACAG	0.562													17	54					0	0	0.004990	0	0
KEL	3792	broad.mit.edu	37	7	142658060	142658060	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:142658060G>A	uc003wcb.2	-	4	565	c.355C>T	c.(355-357)CAG>TAG	p.Q119*		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	119	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCAAGCTCCTGAAAAGAATTA	0.517													123	118					0	0	0.014410	0	0
CLCN1	1180	broad.mit.edu	37	7	143048851	143048851	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:143048851G>A	uc003wcr.1	+	23	2847	c.2760G>A	c.(2758-2760)GGG>GGA	p.G920G	CLCN1_uc011ktc.1_Silent_p.G532G	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	920	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTGGAACAGGGGATGTGATTG	0.622													34	38					0	0	0.004289	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:146997332G>A	uc003weu.1	+	9	1964	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	483	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAGCAGTTCGAACTAATAGT	0.423										HNSCC(39;0.1)			71	61					0	0	0.014410	0	0
EZH2	2146	broad.mit.edu	37	7	148508728	148508728	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:148508728A>T	uc003wfd.1	-	16	2087	c.1921T>A	c.(1921-1923)TAC>AAC	p.Y641N	EZH2_uc011kug.1_Missense_Mutation_p.Y590N|EZH2_uc003wfb.1_Missense_Mutation_p.Y646N|EZH2_uc003wfc.1_Missense_Mutation_p.Y602N|EZH2_uc011kuh.1_Missense_Mutation_p.Y632N	NM_004456	NP_004447	Q15910	EZH2_HUMAN	enhancer of zeste 2 isoform a	641	SET.				negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	DNA binding|histone-lysine N-methyltransferase activity|protein binding	p.Y646N(23)|p.Y646H(11)		haematopoietic_and_lymphoid_tissue(180)|skin(2)|large_intestine(1)	183	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00239)			TCTCCACAGTATTCTGAGATG	0.383			Mis		DLBCL								31	43					0	0	0.009535	0	0
ZNF746	155061	broad.mit.edu	37	7	149171825	149171825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:149171825G>A	uc003wfw.2	-	7	1856	c.1585C>T	c.(1585-1587)CGC>TGC	p.R529C	ZNF746_uc010lpi.2_Missense_Mutation_p.R530C	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	529	C2H2-type 2.				negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGCAGCATGCGATGGCGGATG	0.592													14	10					0	0	0.001855	0	0
SSPO	23145	broad.mit.edu	37	7	149479935	149479935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:149479935G>A	uc010lpk.2	+	15	1901	c.1901G>A	c.(1900-1902)GGA>GAA	p.G634E	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	634	VWFD 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCTGTTCCAGGAGCTGTGCTG	0.612													22	42					0	0	0.002780	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417378	150417378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:150417378C>T	uc003whq.2	+	3	373	c.286C>T	c.(286-288)CCT>TCT	p.P96S	GIMAP1_uc003whp.2_Missense_Mutation_p.P104S	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	96	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAAGACAGATCCTGGCTGTGA	0.647													13	65					0	0	0.001855	0	0
ASB10	136371	broad.mit.edu	37	7	150873316	150873316	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:150873316G>A	uc003wjm.1	-	5	1548	c.1422C>T	c.(1420-1422)AGC>AGT	p.S474S	ASB10_uc003wjl.1_Silent_p.S436S|ASB10_uc003wjn.1_Silent_p.S414S	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	429	SOCS box.				intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCGCACAGCGGCTCAAATGCT	0.662													16	46					0	0	0.006122	0	0
DPP6	1804	broad.mit.edu	37	7	154684056	154684056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:154684056G>A	uc003wlk.2	+	26	2593	c.2464G>A	c.(2464-2466)GAA>AAA	p.E822K	DPP6_uc003wli.2_Missense_Mutation_p.E758K|DPP6_uc003wlm.2_Missense_Mutation_p.E760K|DPP6_uc011kvq.1_Missense_Mutation_p.E715K	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	822	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TTACCCGGACGAAAGCCATTA	0.512													38	40					0	0	0.010771	0	0
LMBR1	64327	broad.mit.edu	37	7	156480835	156480835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:156480835C>T	uc003wmw.3	-	16	1491	c.1276G>A	c.(1276-1278)GGA>AGA	p.G426R	LMBR1_uc003wmv.3_Intron|LMBR1_uc003wmx.3_Missense_Mutation_p.G274R|LMBR1_uc010lqn.2_Missense_Mutation_p.G467R|LMBR1_uc011kvx.1_Intron	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	426	Extracellular (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		TAGAAATTTCCCAGCCAATTA	0.333													55	55					0	0	0.014410	0	0
CSMD1	64478	broad.mit.edu	37	8	2886915	2886915	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:2886915A>T	uc011kwk.1	-	51	8174	c.7784T>A	c.(7783-7785)TTA>TAA	p.L2595*	CSMD1_uc011kwj.1_Nonsense_Mutation_p.L1924*|CSMD1_uc010lrg.2_Nonsense_Mutation_p.L663*	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2595	Extracellular (Potential).|Sushi 16.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCAGCCTTCTAAGTAGTAACC	0.542													10	15					0	0	0.008291	0	0
SGK223	157285	broad.mit.edu	37	8	8185691	8185692	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:8185691_8185692CC>TT	uc003wsh.3	-	4	2600_2601	c.2600_2601GG>AA	c.(2599-2601)GGG>GAA	p.G867E		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	867							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGTGGCGGTTCCCGGGGCTCAA	0.594													88	230					0	0	0.004672	0	0
SGCZ	137868	broad.mit.edu	37	8	14095106	14095106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:14095106G>A	uc003wwq.2	-	4	1079	c.419C>T	c.(418-420)ACC>ATC	p.T140I	SGCZ_uc010lss.2_Missense_Mutation_p.T93I	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	127	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTCACCTATGGTCAGCTGTCC	0.338													200	297					0	0	0.014410	0	0
NKX3-1	4824	broad.mit.edu	37	8	23540212	23540212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:23540212C>T	uc011kzx.1	-	1	239	c.191G>A	c.(190-192)GGA>GAA	p.G64E	NKX3-1_uc003xdv.1_Intron	NM_006167	NP_006158	Q99801	NKX31_HUMAN	NK3 homeobox 1	64					negative regulation of estrogen receptor binding|negative regulation of transcription, DNA-dependent|positive regulation of cell division|positive regulation of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter	nucleus	estrogen receptor activity|estrogen receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region sequence-specific DNA binding				0		Prostate(55;0.114)		Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)|BRCA - Breast invasive adenocarcinoma(99;0.0708)		GCTGCGTCCTCCCTCTGGCTC	0.642													11	12					0	0	0.001855	0	0
CDCA2	157313	broad.mit.edu	37	8	25323824	25323825	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:25323824_25323825CC>TT	uc003xep.1	+	5	1000_1001	c.521_522CC>TT	c.(520-522)TCC>TTT	p.S174F	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.S174F|CDCA2_uc003xeq.1_Missense_Mutation_p.S159F|CDCA2_uc003xer.1_5'Flank	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	174					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		GGAAAAGAGTCCGAGATGACAG	0.381													27	49					0	0	0.004672	0	0
PTK2B	2185	broad.mit.edu	37	8	27308398	27308398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:27308398G>A	uc003xfn.1	+	30	3281	c.2473G>A	c.(2473-2475)GAG>AAG	p.E825K	PTK2B_uc003xfo.1_Missense_Mutation_p.E825K|PTK2B_uc003xfp.1_Missense_Mutation_p.E825K|PTK2B_uc003xfq.1_Missense_Mutation_p.E783K|PTK2B_uc003xfs.1_Missense_Mutation_p.E22K	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	825	Interaction with TGFB1I1 (By similarity).				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		GCTCAGGCAGGAGGAGAAGTC	0.607													9	16					0	0	0.006214	0	0
TEX15	56154	broad.mit.edu	37	8	30703552	30703552	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:30703552G>A	uc003xil.2	-	1	2982	c.2982C>T	c.(2980-2982)TCC>TCT	p.S994S		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	994										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTAGTTTTCTGGAAAGACATT	0.343													64	87					0	0	0.014410	0	0
KCNU1	157855	broad.mit.edu	37	8	36642033	36642033	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:36642033C>T	uc010lvw.2	+	1	192	c.105C>T	c.(103-105)TTC>TTT	p.F35F	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	35	Helical; Name=Segment S0; (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TTGTGACCTTCTTCAGTGGAC	0.418													25	38					0	0	0.003954	0	0
ST18	9705	broad.mit.edu	37	8	53076592	53076592	+	Nonsense_Mutation	SNP	G	A	A	rs149497456	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:53076592G>A	uc003xqz.2	-	8	1510	c.1354C>T	c.(1354-1356)CAG>TAG	p.Q452*	ST18_uc011ldq.1_Nonsense_Mutation_p.Q99*|ST18_uc011ldr.1_Nonsense_Mutation_p.Q417*|ST18_uc011lds.1_Nonsense_Mutation_p.Q357*|ST18_uc003xra.2_Nonsense_Mutation_p.Q452*|ST18_uc003xrb.2_Nonsense_Mutation_p.Q452*	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	452						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GAATCAAGCTGATTTTTATCC	0.448													42	72					0	0	0.014410	0	0
RP1	6101	broad.mit.edu	37	8	55541537	55541537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:55541537G>A	uc003xsd.1	+	4	5243	c.5095G>A	c.(5095-5097)GAA>AAA	p.E1699K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1699					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATTCCAGGAGGAAAGACAAGA	0.408													47	96					0	0	0.014410	0	0
C8orf34	116328	broad.mit.edu	37	8	69434061	69434061	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:69434061C>T	uc010lyz.2	+	6	584	c.535C>T	c.(535-537)CTG>TTG	p.L179L	C8orf34_uc010lyy.1_Silent_p.L179L|C8orf34_uc003xyb.2_Silent_p.L154L	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	179					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TTCTTCTCTTCTGAGGCCCCG	0.398													30	41					0	0	0.013726	0	0
KCNB2	9312	broad.mit.edu	37	8	73849566	73849566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:73849566G>A	uc003xzb.2	+	3	2564	c.1976G>A	c.(1975-1977)GGA>GAA	p.G659E		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	659	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			AGAGAGAAAGGACCTGCTGCC	0.562													15	35					0	0	0.002450	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617404	77617404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:77617404C>T	uc003yav.2	+	2	1468	c.1081C>T	c.(1081-1083)CGC>TGC	p.R361C	ZFHX4_uc003yat.1_Missense_Mutation_p.R361C|ZFHX4_uc003yau.1_Missense_Mutation_p.R361C|ZFHX4_uc003yaw.1_Missense_Mutation_p.R361C	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	361						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCCAACCTTCCGCGGTTTATG	0.458										HNSCC(33;0.089)			44	62					0	0	0.013114	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764725	77764725	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:77764725G>A	uc003yav.2	+	10	5820	c.5433G>A	c.(5431-5433)AAG>AAA	p.K1811K	ZFHX4_uc003yau.1_Silent_p.K1856K|ZFHX4_uc003yaw.1_Silent_p.K1811K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1811						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATCTTATAAGGAGGCAGAAG	0.338										HNSCC(33;0.089)			6	5					0	0	0.001168	0	0
RUNX1T1	862	broad.mit.edu	37	8	92982904	92982904	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:92982904C>T	uc003yfd.2	-	10	1605	c.1521G>A	c.(1519-1521)CAG>CAA	p.Q507Q	RUNX1T1_uc003yfc.1_Silent_p.Q480Q|RUNX1T1_uc003yfe.1_Silent_p.Q470Q|RUNX1T1_uc010mao.2_Silent_p.Q480Q|RUNX1T1_uc011lgi.1_Silent_p.Q518Q|RUNX1T1_uc010man.1_Silent_p.Q132Q|RUNX1T1_uc003yfb.1_Silent_p.Q470Q	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	507					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AATCCTCCTGCTGATTGATAA	0.512													21	34					0	0	0.014323	0	0
FBXO43	286151	broad.mit.edu	37	8	101153311	101153311	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:101153311T>A	uc003yjd.2	-	2	1884	c.1171A>T	c.(1171-1173)AGC>TGC	p.S391C	FBXO43_uc003yje.2_Missense_Mutation_p.S357C|FBXO43_uc010mbp.1_Missense_Mutation_p.S391C	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	391					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			GACTGCGAGCTTTGTTCCCGA	0.498													53	66					0	0	0.014410	0	0
FBXO43	286151	broad.mit.edu	37	8	101153313	101153313	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:101153313T>A	uc003yjd.2	-	2	1882	c.1169A>T	c.(1168-1170)CAA>CTA	p.Q390L	FBXO43_uc003yje.2_Missense_Mutation_p.Q356L|FBXO43_uc010mbp.1_Missense_Mutation_p.Q390L	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	390					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			CTGCGAGCTTTGTTCCCGAAG	0.498													50	67					0	0	0.014410	0	0
RIMS2	9699	broad.mit.edu	37	8	104987645	104987645	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:104987645A>G	uc003yls.2	+	14	2413	c.2172A>G	c.(2170-2172)TCA>TCG	p.S724S	RIMS2_uc003ylp.2_Silent_p.S946S|RIMS2_uc003ylw.2_Silent_p.S738S|RIMS2_uc003ylq.2_Silent_p.S738S|RIMS2_uc003ylr.2_Silent_p.S785S|RIMS2_uc003ylt.2_Silent_p.S331S	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1008					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TAATGTCATCAAACCACTGTT	0.393										HNSCC(12;0.0054)			11	27					0	0	0.001855	0	0
DPYS	1807	broad.mit.edu	37	8	105440329	105440329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:105440329C>T	uc003yly.3	-	6	1100	c.971G>A	c.(970-972)GGG>GAG	p.G324E		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	324					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GTTATCAGTCCCTGTTGTGGT	0.433													38	72					0	0	0.007835	0	0
TTC35	9694	broad.mit.edu	37	8	109488126	109488126	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:109488126C>T	uc003ymw.1	+	8	560	c.525C>T	c.(523-525)GCC>GCT	p.A175A		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	175	TPR 2.					endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			CAAAAGCAGCCTTTTGTTTAG	0.294													18	47					0	0	0.008871	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110520387	110520387	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:110520387G>A	uc003yne.2	+	70	11393	c.11289G>A	c.(11287-11289)GGG>GGA	p.G3763G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3763	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGTGCTTTGGGATGGAATATG	0.378										HNSCC(38;0.096)			43	85					0	0	0.014410	0	0
TRMT12	55039	broad.mit.edu	37	8	125463585	125463585	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:125463585T>A	uc003yra.3	+	1	538	c.417T>A	c.(415-417)AAT>AAA	p.N139K		NM_017956	NP_060426	Q53H54	TYW2_HUMAN	homolog of yeast tRNA methyltransferase 12	139					tRNA processing		methyltransferase activity			upper_aerodigestive_tract(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GGCATGGTAATCTCTTGTTGC	0.552													37	75					0	0	0.006230	0	0
MTSS1	9788	broad.mit.edu	37	8	125568001	125568002	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:125568001_125568002CC>TT	uc003yrk.2	-	13	2082_2083	c.1548_1549GG>AA	c.(1546-1551)GAGGAC>GAAAAC	p.D517N	NDUFB9_uc011lim.1_Intron|MTSS1_uc003yrh.2_Missense_Mutation_p.D166N|MTSS1_uc011lin.1_Missense_Mutation_p.D291N|MTSS1_uc011lio.1_Missense_Mutation_p.D407N|MTSS1_uc003yri.2_Missense_Mutation_p.D235N|MTSS1_uc003yrj.2_Missense_Mutation_p.D492N|MTSS1_uc003yrl.2_Missense_Mutation_p.D521N	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	517					actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GGGATGGTGTCCTCAGAGCAGC	0.599													5	12					0	0	0.004672	0	0
ADCY8	114	broad.mit.edu	37	8	131848648	131848648	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:131848648G>A	uc003ytd.3	-	12	2806	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	ADCY8_uc010mds.2_Silent_p.F719F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	850	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCAGCCGGAGGAAAACTGCAC	0.547										HNSCC(32;0.087)			17	38					0	0	0.006122	0	0
FAM135B	51059	broad.mit.edu	37	8	139323150	139323150	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:139323150G>A	uc003yuy.2	-	3	262	c.91C>T	c.(91-93)CGA>TGA	p.R31*	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	31										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AAGGTCACTCGGATCTGGTAA	0.488										HNSCC(54;0.14)			19	45					0	0	0.014323	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961147	143961147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:143961147G>A	uc003yxi.2	-	1	90	c.83C>T	c.(82-84)GCC>GTC	p.A28V	CYP11B1_uc003yxj.2_Missense_Mutation_p.A28V|CYP11B1_uc010mey.2_Missense_Mutation_p.A28V	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	28					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GACCCGGGCGGCTCTCGTGCC	0.647									Familial_Hyperaldosteronism_type_I				47	60					0	0	0.013114	0	0
EPPK1	83481	broad.mit.edu	37	8	144942030	144942031	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr8:144942030_144942031CC>TT	uc003zaa.1	-	1	5404_5405	c.5391_5392GG>AA	c.(5389-5394)TGGGAC>TGAAAC	p.1797_1798WD>*N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1797_1798						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GACAGCAGGTCCCAGAAAGAGA	0.53													24	55					0	0	0.004672	0	0
MPDZ	8777	broad.mit.edu	37	9	13125266	13125266	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:13125266G>A	uc010mia.1	-	34	4813	c.4756C>T	c.(4756-4758)CAG>TAG	p.Q1586*	MPDZ_uc003zky.3_Nonsense_Mutation_p.Q148*|MPDZ_uc010mib.2_Nonsense_Mutation_p.Q291*|MPDZ_uc010mhx.2_Nonsense_Mutation_p.Q408*|MPDZ_uc011lmm.1_Nonsense_Mutation_p.Q445*|MPDZ_uc003zkz.3_Nonsense_Mutation_p.Q279*|MPDZ_uc010mhy.2_Nonsense_Mutation_p.Q1586*|MPDZ_uc010mhz.2_Nonsense_Mutation_p.Q1553*|MPDZ_uc011lmn.1_Nonsense_Mutation_p.Q1553*|MPDZ_uc003zlb.3_Nonsense_Mutation_p.Q1586*	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1586					interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		ATCAGAGACTGGGAGCTGTTC	0.512													24	31					0	0	0.004656	0	0
MPDZ	8777	broad.mit.edu	37	9	13176228	13176228	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:13176228A>C	uc010mia.1	-	19	2895	c.2838T>G	c.(2836-2838)TGT>TGG	p.C946W	MPDZ_uc003zkz.3_5'Flank|MPDZ_uc010mhy.2_Missense_Mutation_p.C946W|MPDZ_uc010mhz.2_Missense_Mutation_p.C946W|MPDZ_uc011lmn.1_Missense_Mutation_p.C946W|MPDZ_uc003zlb.3_Missense_Mutation_p.C946W	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	946					interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		TTGTGTTTTCACATTCATATT	0.393													3	5					0	0	0.004672	0	0
BNC2	54796	broad.mit.edu	37	9	16436277	16436277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:16436277G>A	uc003zml.2	-	6	2055	c.1915C>T	c.(1915-1917)CCT>TCT	p.P639S	BNC2_uc011lmw.1_Missense_Mutation_p.P544S|BNC2_uc003zmm.2_Missense_Mutation_p.P597S|BNC2_uc003zmq.1_Missense_Mutation_p.P653S|BNC2_uc003zmr.1_Missense_Mutation_p.P676S|BNC2_uc003zmp.1_Missense_Mutation_p.P667S|BNC2_uc010mij.1_Missense_Mutation_p.P561S|BNC2_uc011lmv.1_Missense_Mutation_p.P465S|BNC2_uc003zmo.1_Missense_Mutation_p.P561S|BNC2_uc003zmj.2_Missense_Mutation_p.P404S|BNC2_uc003zmk.2_RNA|BNC2_uc003zmi.2_Missense_Mutation_p.P404S|BNC2_uc003zmn.1_Missense_Mutation_p.P404S	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	639					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		ATCTTCACAGGCATGCTTGAC	0.522													36	28					0	0	0.004878	0	0
SLC24A2	25769	broad.mit.edu	37	9	19550251	19550251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:19550251C>T	uc003zoa.1	-	7	1425	c.1363G>A	c.(1363-1365)GAG>AAG	p.E455K	SLC24A2_uc003zob.1_Missense_Mutation_p.E438K	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	455	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		GGCTGGTCCTCCTCCTCATCA	0.453													34	32					0	0	0.005524	0	0
ANXA2P2	304	broad.mit.edu	37	9	33625140	33625141	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:33625140_33625141GA>AC	uc010mjx.2	+	1	918_919	c.869_870GA>AC	c.(868-870)AGA>AAC	p.R290N		NM_004039	NP_004030			annexin A2 isoform 2												0						GTCCTGATCAGAATCATGGTCT	0.475													9	13					0	0	0.004672	0	0
NPR2	4882	broad.mit.edu	37	9	35801659	35801659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:35801659G>A	uc003zyd.2	+	8	1456	c.1456G>A	c.(1456-1458)GAG>AAG	p.E486K	NPR2_uc010mlb.2_Missense_Mutation_p.E486K	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	486	Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	GCTGGAGAAGGAGCTGGCTAG	0.562													30	26					0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	9	66513886	66513886	+	RNA	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:66513886G>A	uc010mnh.1	-	6		c.862C>T								Homo sapiens cDNA FLJ20444 fis, clone KAT05128.																		GTCTGCTCTTGGAGCACAGGC	0.493													8	102					0	0	0.004007	0	0
APBA1	320	broad.mit.edu	37	9	72064563	72064563	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:72064563G>A	uc004ahh.2	-	10	2394	c.2118C>T	c.(2116-2118)ATC>ATT	p.I706I		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	706	PDZ 1.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TAATGGACATGATCTGGTCAC	0.512													55	48					0	0	0.014410	0	0
C9orf125	84302	broad.mit.edu	37	9	104238339	104238339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:104238339G>A	uc004bbm.2	-	2	1358	c.1036C>T	c.(1036-1038)CGG>TGG	p.R346W	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	346						integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				GTGAGGGTCCGGCGGGCCGCA	0.612													18	9					0	0	0.006122	0	0
OR13C8	138802	broad.mit.edu	37	9	107331456	107331456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:107331456G>A	uc011lvo.1	+	1	8	c.8G>A	c.(7-9)AGG>AAG	p.R3K		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AATATGGAAAGGACCAACGAT	0.398													48	22					0	0	0.014410	0	0
TRIM32	22954	broad.mit.edu	37	9	119460989	119460989	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:119460989G>C	uc004bjx.2	+	2	1126	c.968G>C	c.(967-969)AGA>ACA	p.R323T	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.R323T	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	323					fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						GTTACTTTTAGAGAGATGGAC	0.562									Bardet-Biedl_syndrome				39	19					0	0	0.006999	0	0
OR1L8	138881	broad.mit.edu	37	9	125330182	125330182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:125330182G>A	uc004bmp.1	-	1	575	c.575C>T	c.(574-576)TCC>TTC	p.S192F		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						GACAAATATGGAAGAGCAGGA	0.433													25	12					0	0	0.003330	0	0
NUP188	23511	broad.mit.edu	37	9	131742985	131742986	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:131742985_131742986GG>AA	uc004bws.1	+	14	1392_1393	c.1370_1371GG>AA	c.(1369-1371)GGG>GAA	p.G457E		NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	457					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						CTGGTATCAGGGAAGTCCACAG	0.46													31	19					0	0	0.004672	0	0
USP20	10868	broad.mit.edu	37	9	132641905	132641905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:132641905C>T	uc004bys.2	+	24	2777	c.2566C>T	c.(2566-2568)CAT>TAT	p.H856Y	USP20_uc004byr.2_Missense_Mutation_p.H856Y|USP20_uc004byt.1_Missense_Mutation_p.H856Y|USP20_uc004byu.1_Missense_Mutation_p.H42Y	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	856	DUSP 2.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				AGGAAGCGGCCATGTCCAGCT	0.657													35	26					0	0	0.003755	0	0
COL5A1	1289	broad.mit.edu	37	9	137726842	137726842	+	Missense_Mutation	SNP	A	G	G	rs71814129		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:137726842A>G	uc004cfe.2	+	65	5544	c.5162A>G	c.(5161-5163)AAC>AGC	p.N1721S	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1721	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCCGAGGGCAACCCTGTGGGT	0.647													8	3					0	0	0.004482	0	0
LCN1	3933	broad.mit.edu	37	9	138415115	138415115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:138415115G>A	uc004cfz.1	+	3	317	c.259G>A	c.(259-261)GAG>AAG	p.E87K	LCN1_uc004cga.1_Missense_Mutation_p.E87K	NM_002297	NP_002288	P31025	LCN1_HUMAN	lipocalin 1 precursor	87					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		GGCCGTCCTGGAGAAAACTGA	0.652													9	8					0	0	0.004482	0	0
LCNL1	401562	broad.mit.edu	37	9	139878151	139878151	+	Missense_Mutation	SNP	G	A	A	rs142707510	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr9:139878151G>A	uc004ckh.1	+	1	707	c.113G>A	c.(112-114)GGA>GAA	p.G38E		NM_207510	NP_997393	Q6ZST4	LCNL1_HUMAN	lipocalin-like 1	38							binding				0						CTCAAGTTTGGATACCCCACG	0.572													43	26					0	0	0.014410	0	0
PPP2R3B	28227	broad.mit.edu	37	X	295174	295174	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:295174C>T	uc004cpg.2	-	13	1857	c.1656G>A	c.(1654-1656)GAG>GAA	p.E552E	PPP2R3B_uc004cpf.2_Silent_p.E153E	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	552					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GTGAGGGCGCCTCGAAGAAGG	0.716													11	21					0	0	0.013537	0	0
IL3RA	3563	broad.mit.edu	37	X	1497607	1497607	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:1497607C>T	uc004cps.2	+	10	1279	c.930C>T	c.(928-930)ATC>ATT	p.I310I	IL3RA_uc011mhd.1_Silent_p.I232I	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	310	Helical; (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CGCTGCTGATCGCGCTGGGGA	0.657													16	37					0	0	0.010504	0	0
ARSF	416	broad.mit.edu	37	X	3028281	3028281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:3028281C>T	uc004cre.1	+	10	1599	c.1378C>T	c.(1378-1380)CCC>TCC	p.P460S	ARSF_uc004crf.1_Missense_Mutation_p.P460S	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	460						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCGGTGGATCCCCAAGGACGA	0.572													41	80					0	0	0.014410	0	0
MXRA5	25878	broad.mit.edu	37	X	3229630	3229630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:3229630G>A	uc004crg.3	-	7	6771	c.6614C>T	c.(6613-6615)ACC>ATC	p.T2205I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2205	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACCACCAGGGTCCCATTGGC	0.448													42	75					0	0	0.013114	0	0
MXRA5	25878	broad.mit.edu	37	X	3235667	3235667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:3235667C>T	uc004crg.3	-	6	6212	c.6055G>A	c.(6055-6057)GAC>AAC	p.D2019N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2019	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACGCCTCTGTCTGAGAAGGAC	0.642													16	28					0	0	0.003163	0	0
SHROOM2	357	broad.mit.edu	37	X	9900605	9900605	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:9900605C>T	uc004csu.1	+	6	3372	c.3282C>T	c.(3280-3282)TTC>TTT	p.F1094F	SHROOM2_uc004csv.2_5'UTR|SHROOM2_uc011mic.1_5'UTR|SHROOM2_uc004csw.1_5'UTR	NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	1094					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GCAGGCCCTTCCCAACGCCAT	0.701													22	25					0	0	0.012319	0	0
ARHGAP6	395	broad.mit.edu	37	X	11272674	11272674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:11272674G>A	uc004cup.1	-	2	1615	c.742C>T	c.(742-744)CCC>TCC	p.P248S	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Missense_Mutation_p.P248S|ARHGAP6_uc004cum.1_Missense_Mutation_p.P45S|ARHGAP6_uc004cun.1_Missense_Mutation_p.P68S|ARHGAP6_uc010neb.1_Missense_Mutation_p.P70S|ARHGAP6_uc011mif.1_Missense_Mutation_p.P45S	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	248					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						TTACCTTTGGGAATGGTGATC	0.527													32	65					0	0	0.003271	0	0
FRMPD4	9758	broad.mit.edu	37	X	12722489	12722489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:12722489G>A	uc004cuz.1	+	11	1588	c.1082G>A	c.(1081-1083)GGA>GAA	p.G361E	FRMPD4_uc011mij.1_Missense_Mutation_p.G353E	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	361	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AAAGAATGGGGATTAGAGACT	0.358													35	70					0	0	0.004289	0	0
FIGF	2277	broad.mit.edu	37	X	15373285	15373286	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:15373285_15373286GG>AA	uc004cwt.1	-	4	1136_1137	c.627_628CC>TT	c.(625-630)ATCCCT>ATTTCT	p.P210S		NM_004469	NP_004460	O43915	VEGFD_HUMAN	vascular endothelial growth factor D	210					angiogenesis|cell differentiation|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of mast cell chemotaxis|vascular endothelial growth factor receptor signaling pathway	extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|platelet-derived growth factor receptor binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					TCTTCTTCAGGGATCTGGATGG	0.386													37	92					0	0	0.004672	0	0
NHS	4810	broad.mit.edu	37	X	17746076	17746076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:17746076G>A	uc004cxx.2	+	6	4125	c.3787G>A	c.(3787-3789)GAT>AAT	p.D1263N	NHS_uc011mix.1_Missense_Mutation_p.D1284N|NHS_uc004cxy.2_Missense_Mutation_p.D1107N|NHS_uc004cxz.2_Missense_Mutation_p.D1086N|NHS_uc004cya.2_Missense_Mutation_p.D986N	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	1263						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CCGCCCAAATGATTTGGATGG	0.483													38	93					0	0	0.003755	0	0
CXorf23	256643	broad.mit.edu	37	X	19983446	19983446	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:19983446C>T	uc004czp.2	-	3	990	c.990G>A	c.(988-990)GGG>GGA	p.G330G	CXorf23_uc010nfn.2_RNA|CXorf23_uc011mjg.1_5'UTR|CXorf23_uc004czo.2_Silent_p.G280G	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	330						mitochondrion				lung(1)|skin(1)	2						GAGTCTCTCTCCCTCTTCCAG	0.348													45	97					0	0	0.014410	0	0
KLHL15	80311	broad.mit.edu	37	X	24006997	24006997	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:24006997G>A	uc004dba.3	-	4	1112	c.856C>T	c.(856-858)CGA>TGA	p.R286*		NM_030624	NP_085127	Q96M94	KLH15_HUMAN	kelch-like 15	286										ovary(1)|breast(1)	2						ATCATTCCTCGAAATACTGTA	0.438													72	133					0	0	0.014410	0	0
ZFX	7543	broad.mit.edu	37	X	24227093	24227093	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:24227093C>T	uc004dbf.2	+	8	1428	c.1170C>T	c.(1168-1170)CTC>CTT	p.L390L	ZFX_uc004dbe.2_Silent_p.L390L|ZFX_uc011mjv.1_Silent_p.L429L|ZFX_uc010nfy.1_Silent_p.L241L|ZFX_uc010nfz.2_Intron	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	390					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CTGCTGGCCTCGGCAGACTGG	0.468													30	53					0	0	0.008361	0	0
ARX	170302	broad.mit.edu	37	X	25033751	25033751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:25033751C>T	uc004dbp.3	-	1	315	c.104G>A	c.(103-105)CGG>CAG	p.R35Q		NM_139058	NP_620689	Q96QS3	ARX_HUMAN	aristaless related homeobox	35						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGGGCTCCTCCGGCCCAGGAT	0.612													12	11					0	0	0.010729	0	0
SMEK3P	139420	broad.mit.edu	37	X	27480757	27480757	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:27480757G>A	uc004dbu.1	-	1	702	c.657C>T	c.(655-657)ATC>ATT	p.I219I		NR_002784				RecName: Full=Putative SMEK homolog 3;												0						CCACATCCATGATACACTCGT	0.408													11	27					0	0	0.008291	0	0
MAGEB4	4115	broad.mit.edu	37	X	30260652	30260652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:30260652G>A	uc004dcb.2	+	1	484	c.400G>A	c.(400-402)GAA>AAA	p.E134K	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	134	MAGE.									ovary(1)	1						TACAAAGGCAGAAATGCTGAA	0.453													12	32					0	0	0.001855	0	0
FAM47A	158724	broad.mit.edu	37	X	34148254	34148254	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:34148254C>T	uc004ddg.2	-	1	2175	c.2142G>A	c.(2140-2142)TTG>TTA	p.L714L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	714										ovary(4)|central_nervous_system(1)	5						TGGGGTCAATCAAAGGTTCAT	0.428													52	84					0	0	0.014410	0	0
FAM47A	158724	broad.mit.edu	37	X	34150173	34150173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:34150173C>T	uc004ddg.2	-	1	256	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	75										ovary(4)|central_nervous_system(1)	5						AGTAAAAACTCGTCACGGCGA	0.532													41	90					0	0	0.011902	0	0
FAM47B	170062	broad.mit.edu	37	X	34962619	34962619	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:34962619G>A	uc004ddi.1	+	1	1689	c.1671G>A	c.(1669-1671)TTG>TTA	p.L557L		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	557										ovary(3)|breast(1)	4						AGCCTAAGTTGGGGAAAAAGC	0.493													55	82					0	0	0.014410	0	0
XK	7504	broad.mit.edu	37	X	37545256	37545256	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:37545256C>T	uc004ddq.2	+	1	124	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_021083	NP_066569	P51811	XK_HUMAN	membrane transport protein XK	14	Helical; (Potential).				amino acid transport	integral to membrane	protein binding|transporter activity				0		all_lung(315;0.175)				TGTTCCTGTTCGTGGCCGAGA	0.682													8	12					0	0	0.004482	0	0
BCOR	54880	broad.mit.edu	37	X	39923709	39923709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:39923709G>A	uc004den.3	-	7	3674	c.3382C>T	c.(3382-3384)CCC>TCC	p.P1128S	BCOR_uc004dep.3_Missense_Mutation_p.P1128S|BCOR_uc004deo.3_Missense_Mutation_p.P1110S|BCOR_uc010nhb.2_5'Flank|BCOR_uc004dem.3_Missense_Mutation_p.P1128S	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	1128					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CGGAGGGTGGGGCTGTGAGGC	0.607													18	60					0	0	0.006122	0	0
USP9X	8239	broad.mit.edu	37	X	41007791	41007791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:41007791G>A	uc004dfb.2	+	12	2222	c.1589G>A	c.(1588-1590)AGT>AAT	p.S530N	USP9X_uc004dfc.2_Missense_Mutation_p.S530N	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	530					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CTGGCTCTCAGTGCCCACATA	0.438													44	69					0	0	0.013114	0	0
DDX3X	1654	broad.mit.edu	37	X	41205589	41205589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:41205589C>T	uc004dfe.2	+	13	2278	c.1423C>T	c.(1423-1425)CGT>TGT	p.R475C	DDX3X_uc004dff.2_Missense_Mutation_p.R475C|DDX3X_uc011mkq.1_Missense_Mutation_p.R459C|DDX3X_uc011mkr.1_Intron|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	475	Helicase C-terminal.|Necessary for interaction with XPO1.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						CCATGGAGACCGTTCTCAGAG	0.438										HNSCC(61;0.18)			31	70					0	0	0.009535	0	0
NDP	4693	broad.mit.edu	37	X	43809112	43809112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:43809112C>T	uc004dga.3	-	3	914	c.335G>A	c.(334-336)GGG>GAG	p.G112E		NM_000266	NP_000257	Q00604	NDP_HUMAN	norrin precursor	112	CTCK.		G -> E (in ND).		canonical Wnt receptor signaling pathway|cell proliferation|cell-cell signaling|nervous system development|positive regulation of transcription, DNA-dependent|sensory perception of sound|vacuole organization|visual perception	extracellular matrix|extracellular space	cell surface binding|frizzled binding|growth factor activity|protein homodimerization activity				0						TCGCATGCCCCCTGAGCATCG	0.607											OREG0019744	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	6					0	0	0.000602	0	0
USP11	8237	broad.mit.edu	37	X	47102899	47102899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:47102899C>T	uc004dhp.2	+	13	1817	c.1817C>T	c.(1816-1818)TCC>TTC	p.S606F	USP11_uc004dhq.2_Missense_Mutation_p.S333F	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	606					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						TACAACAACTCCTACTACGGC	0.597													32	37					0	0	0.010818	0	0
ZNF182	7569	broad.mit.edu	37	X	47836430	47836430	+	Silent	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:47836430T>G	uc004dir.2	-	7	1402	c.1056A>C	c.(1054-1056)GGA>GGC	p.G352G	ZNF182_uc004dis.2_Silent_p.G333G|ZNF182_uc004dit.2_Silent_p.G352G|ZNF182_uc011mlu.1_Silent_p.G332G	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	352	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TGAAAGATTCTCCACATTTAG	0.368													42	105					0	0	0.011902	0	0
ZNF630	57232	broad.mit.edu	37	X	47918541	47918541	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:47918541G>A	uc004div.3	-	5	1542	c.1290C>T	c.(1288-1290)CCC>CCT	p.P430P	ZNF630_uc010nhz.1_Intron|ZNF630_uc004diw.2_Silent_p.P306P	NM_001037735	NP_001032824	Q2M218	ZN630_HUMAN	zinc finger protein 630	430					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|lung(1)	2						CACACTTATAGGGCTTCTCTC	0.433													15	12					0	0	0.004007	0	0
PORCN	64840	broad.mit.edu	37	X	48372657	48372657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:48372657C>T	uc010nie.1	+	9	907	c.749C>T	c.(748-750)TCC>TTC	p.S250F	PORCN_uc004djr.1_Missense_Mutation_p.S245F|PORCN_uc004djs.1_Missense_Mutation_p.S239F|PORCN_uc004djt.1_Missense_Mutation_p.S168F|PORCN_uc011mlx.1_Missense_Mutation_p.S168F|PORCN_uc004dju.1_Missense_Mutation_p.S108F|PORCN_uc004djv.1_Missense_Mutation_p.S250F|PORCN_uc004djw.1_Missense_Mutation_p.S244F	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	250	Extracellular (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						AGTGCTGTCTCCTTCCACTTC	0.587													43	73					0	0	0.011902	0	0
GATA1	2623	broad.mit.edu	37	X	48652280	48652280	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:48652280G>A	uc004dkq.3	+	6	1042	c.951G>A	c.(949-951)CGG>CGA	p.R317R		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	317					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						AAAAGAAACGGGGCTCCAGTC	0.592			Mis|F		megakaryoblastic leukemia of Downs Syndrome								12	11					0	0	0.001855	0	0
GATA1	2623	broad.mit.edu	37	X	48652475	48652475	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:48652475C>T	uc004dkq.3	+	6	1237	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	382					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						TCATGCCTTTCCCTGGACCCC	0.662			Mis|F		megakaryoblastic leukemia of Downs Syndrome								10	30					0	0	0.010729	0	0
HDAC6	10013	broad.mit.edu	37	X	48681659	48681659	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:48681659G>A	uc011mmi.1	+	25	2945	c.2850G>A	c.(2848-2850)CAG>CAA	p.Q950Q	HDAC6_uc004dks.1_Silent_p.Q950Q|HDAC6_uc010nig.1_Silent_p.Q798Q|HDAC6_uc004dkt.1_Silent_p.Q950Q|HDAC6_uc011mmk.1_Silent_p.Q931Q|HDAC6_uc004dkv.1_Silent_p.Q598Q|HDAC6_uc004dkw.1_Silent_p.Q598Q|HDAC6_uc004dkx.1_Silent_p.Q313Q	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	950					aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CTCCGGACCAGACCACCTCAG	0.642													9	10					0	0	0.004482	0	0
SHROOM4	57477	broad.mit.edu	37	X	50339751	50339752	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:50339751_50339752CC>TT	uc004dpe.2	-	9	4451_4452	c.4425_4426GG>AA	c.(4423-4428)GGGGAA>GGAAAA	p.E1476K	SHROOM4_uc004dpd.3_RNA	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1476	Potential.|ASD2.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					AGTTGCTCTTCCCCGAGCTTGA	0.525													22	31					0	0	0.004672	0	0
XAGE3	170626	broad.mit.edu	37	X	52896107	52896107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:52896107G>A	uc004dre.2	-	2	118	c.58C>T	c.(58-60)CCT>TCT	p.P20S	XAGE3_uc004drf.2_Missense_Mutation_p.P20S	NM_130776	NP_570132	Q8WTP9	GAGD4_HUMAN	XAGE-3 protein	20											0						ATCAGCTCAGGAGGTGGTACA	0.403													52	92					0	0	0.014410	0	0
HSD17B10	3028	broad.mit.edu	37	X	53460832	53460832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:53460832C>T	uc004dsl.1	-	2	60	c.29G>A	c.(28-30)GGC>GAC	p.G10D	HSD17B10_uc004dsm.1_Missense_Mutation_p.G10D	NM_004493	NP_004484	Q99714	HCD2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 10	10					branched chain family amino acid catabolic process|lipid metabolic process|tRNA processing	mitochondrial matrix|plasma membrane	3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity|3-hydroxyacyl-CoA dehydrogenase activity|cholate 7-alpha-dehydrogenase activity				0					NADH(DB00157)	CGCCACCAGGCCCTGTCAAAA	0.647													17	24					0	0	0.007413	0	0
HUWE1	10075	broad.mit.edu	37	X	53576162	53576162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:53576162C>T	uc004dsp.2	-	67	10195	c.9793G>A	c.(9793-9795)GAG>AAG	p.E3265K	HUWE1_uc004dsn.2_Missense_Mutation_p.E2073K	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	3265					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						GGACGGTTCTCATGGCTACTT	0.527													64	128					0	0	0.014410	0	0
ITIH5L	347365	broad.mit.edu	37	X	54784030	54784031	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:54784030_54784031GG>AA	uc004dtj.2	-	8	2506_2507	c.2476_2477CC>TT	c.(2476-2478)CCT>TTT	p.P826F		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	826	Pro-rich.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						AGGAACCCTAGGTCTGGTGTGT	0.52													52	94					0	0	0.004672	0	0
EFNB1	1947	broad.mit.edu	37	X	68059536	68059536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:68059536G>A	uc004dxd.3	+	3	1216	c.436G>A	c.(436-438)GAA>AAA	p.E146K	EFNB1_uc004dxe.2_Missense_Mutation_p.E146K	NM_004429	NP_004420	P98172	EFNB1_HUMAN	ephrin-B1 precursor	146	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to plasma membrane|soluble fraction|synapse	ephrin receptor binding				0						GGAGGGGCTGGAAAACCGGGA	0.562													16	20					0	0	0.008871	0	0
GDPD2	54857	broad.mit.edu	37	X	69649817	69649817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:69649817G>A	uc004dyh.2	+	12	1462	c.1211G>A	c.(1210-1212)GGA>GAA	p.G404E	GDPD2_uc010nky.1_Missense_Mutation_p.E257K|GDPD2_uc011mpk.1_Missense_Mutation_p.G404E|GDPD2_uc011mpl.1_Missense_Mutation_p.G325E|GDPD2_uc011mpm.1_Missense_Mutation_p.G325E	NM_017711	NP_060181	Q9HCC8	GDPD2_HUMAN	osteoblast differentiation promoting factor	404	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol inositolphosphodiesterase activity|metal ion binding			ovary(2)	2	Renal(35;0.156)					CGGGCACCTGGAATGCGCCAG	0.517													26	38					0	0	0.004656	0	0
DLG3	1741	broad.mit.edu	37	X	69665393	69665393	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:69665393G>A	uc004dyi.1	+	1	670	c.342G>A	c.(340-342)CGG>CGA	p.R114R		NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	114					axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					GTACCAACCGGGACTGGTATG	0.672													6	6					0	0	0.003080	0	0
SLC7A3	84889	broad.mit.edu	37	X	70147780	70147780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:70147780G>A	uc004dyn.2	-	6	1069	c.911C>T	c.(910-912)TCT>TTT	p.S304F	SLC7A3_uc004dyo.2_Missense_Mutation_p.S304F	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	304	Helical; Name=7; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GGTGAGTGCAGAAGAGACAGC	0.522													13	32					0	0	0.001855	0	0
MED12	9968	broad.mit.edu	37	X	70343562	70343562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:70343562C>T	uc004dyy.2	+	12	1935	c.1736C>T	c.(1735-1737)CCC>CTC	p.P579L	MED12_uc011mpq.1_Missense_Mutation_p.P579L|MED12_uc004dyz.2_Missense_Mutation_p.P579L|MED12_uc004dza.2_Missense_Mutation_p.P426L	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	579					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					ACACAGGCTCCCATGCTGAGT	0.532													3	7					0	0	0.004672	0	0
NHSL2	340527	broad.mit.edu	37	X	71360568	71360568	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:71360568A>T	uc011mqa.1	+	6	3170	c.3170A>T	c.(3169-3171)CAA>CTA	p.Q1057L	NHSL2_uc004eak.1_Missense_Mutation_p.Q691L|NHSL2_uc010nli.2_Missense_Mutation_p.Q826L	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	1057											0	Renal(35;0.156)					TCACTTGGTCAAAGGGTGACT	0.552													24	29					0	0	0.003954	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962795	73962795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:73962795G>A	uc004eby.2	-	3	2214	c.1597C>T	c.(1597-1599)CGT>TGT	p.R533C		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	533					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GGCTCCTTACGGGTTACTTTT	0.423													36	37					0	0	0.003755	0	0
COX7B	1349	broad.mit.edu	37	X	77155057	77155057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:77155057C>T	uc004ecu.1	+	1	97	c.7C>T	c.(7-9)CCC>TCC	p.P3S		NM_001866	NP_001857	P24311	COX7B_HUMAN	cytochrome c oxidase subunit VIIb precursor	3					respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity				0						CACGATGTTTCCCTTGGTCAA	0.453													19	27					0	0	0.007413	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913440	77913440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:77913440C>T	uc004edc.1	-	2	774	c.478G>A	c.(478-480)GAT>AAT	p.D160N		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	160	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						TTTGGGGGATCCTGGGGTTCT	0.562													28	50					0	0	0.006320	0	0
TBX22	50945	broad.mit.edu	37	X	79282782	79282782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:79282782C>T	uc010nmg.1	+	7	960	c.826C>T	c.(826-828)CCT>TCT	p.P276S	TBX22_uc004edi.1_Missense_Mutation_p.P156S|TBX22_uc004edj.1_Missense_Mutation_p.P276S	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	276	T-box.				multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						AGAAAGAAATCCTTTTGCTAA	0.318													19	33					0	0	0.008871	0	0
FAM46D	169966	broad.mit.edu	37	X	79698072	79698072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:79698072G>A	uc004edl.1	+	5	368	c.34G>A	c.(34-36)GAT>AAT	p.D12N	FAM46D_uc004edm.1_Missense_Mutation_p.D12N	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	12										lung(2)	2						TCTCACTTGGGATCAAGTTAT	0.363													11	24					0	0	0.008291	0	0
POU3F4	5456	broad.mit.edu	37	X	82763742	82763742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:82763742C>T	uc004eeg.2	+	1	474	c.410C>T	c.(409-411)CCT>CTT	p.P137L		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	137					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TACTCGCAGCCTGGCTTCACC	0.682													8	7					0	0	0.003080	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83359608	83359608	+	Silent	SNP	A	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:83359608A>G	uc004eej.1	-	17	1590	c.1513T>C	c.(1513-1515)TTA>CTA	p.L505L	RPS6KA6_uc011mqt.1_Silent_p.L505L|RPS6KA6_uc011mqu.1_Silent_p.L402L	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	505	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						CGGTCAAGTAACTCTCCTCCT	0.318													13	33					0	0	0.004990	0	0
CPXCR1	53336	broad.mit.edu	37	X	88008617	88008617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:88008617G>A	uc004efd.3	+	3	461	c.202G>A	c.(202-204)GAA>AAA	p.E68K	CPXCR1_uc004efc.3_Missense_Mutation_p.E68K	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	68						intracellular	zinc ion binding			ovary(3)	3						TCAAGCAGCAGAAAACAGCGA	0.448													12	21					0	0	0.010729	0	0
SYTL4	94121	broad.mit.edu	37	X	99956463	99956463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:99956463G>A	uc004egd.3	-	5	673	c.317C>T	c.(316-318)GCC>GTC	p.A106V	SYTL4_uc010nnc.2_Missense_Mutation_p.A106V|SYTL4_uc004ege.3_Missense_Mutation_p.A106V|SYTL4_uc004egf.3_Missense_Mutation_p.A106V|SYTL4_uc004egg.3_Missense_Mutation_p.A106V	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	106	RabBD.				exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CATTTCCTTGGCGCACACCTT	0.512													41	90					0	0	0.011902	0	0
DRP2	1821	broad.mit.edu	37	X	100503576	100503576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:100503576G>A	uc004egz.2	+	14	1897	c.1528G>A	c.(1528-1530)GAA>AAA	p.E510K	DRP2_uc011mrh.1_Missense_Mutation_p.E432K	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	510					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						GGAAGTGAAGGAAAAACTTCA	0.468													104	184					0	0	0.014410	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911449	100911449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:100911449G>A	uc004eid.2	-	3	1481	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	ARMCX2_uc004eie.3_Missense_Mutation_p.P376S|ARMCX2_uc004eif.3_Missense_Mutation_p.P376S|ARMCX2_uc004eig.3_Missense_Mutation_p.P376S|ARMCX2_uc010nnt.2_Missense_Mutation_p.P376S	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	376	ARM 1.					integral to membrane	binding			ovary(6)	6						ATTTCATAAGGAAAGGGGCGC	0.532													49	70					0	0	0.014410	0	0
NXF3	56000	broad.mit.edu	37	X	102333542	102333542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:102333542C>T	uc004eju.2	-	17	1468	c.1397G>A	c.(1396-1398)GGT>GAT	p.G466D	NXF3_uc010noi.1_Silent_p.G312G	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	466	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						GAGAACAGAACCCTGAGACTG	0.537													77	163					0	0	0.014410	0	0
TCEAL8	90843	broad.mit.edu	37	X	102508793	102508793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:102508793C>T	uc004ejx.2	-	3	342	c.115G>A	c.(115-117)GAA>AAA	p.E39K	TCEAL8_uc004ejy.2_Missense_Mutation_p.E39K	NM_153333	NP_699164	Q8IYN2	TCAL8_HUMAN	transcription elongation factor A (SII)-like 8	39					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						ACGCCTTCTTCGGAAGGTTGA	0.532													64	102					0	0	0.014410	0	0
RAB40A	142684	broad.mit.edu	37	X	102754975	102754975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:102754975C>T	uc004ekk.2	-	3	1052	c.710G>A	c.(709-711)CGA>CAA	p.R237Q		NM_080879	NP_543155	Q8WXH6	RB40A_HUMAN	RAB40A, member RAS oncogene family	237					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0						GGAGAGGCCTCGCATCATCCT	0.582													70	125					0	0	0.014410	0	0
TCEAL1	9338	broad.mit.edu	37	X	102884995	102884995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:102884995G>A	uc004eks.2	+	3	325	c.151G>A	c.(151-153)GAG>AAG	p.E51K	TCEAL1_uc004ekt.2_Missense_Mutation_p.E51K|TCEAL1_uc004eku.2_Missense_Mutation_p.E51K	NM_001006640	NP_001006641	Q15170	TCAL1_HUMAN	transcription elongation factor A (SII)-like 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTTCTTTCCTGAGGAGCTCTT	0.637													16	20					0	0	0.004990	0	0
NRK	203447	broad.mit.edu	37	X	105152766	105152766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:105152766G>A	uc004emd.2	+	13	1436	c.1133G>A	c.(1132-1134)AGA>AAA	p.R378K	NRK_uc010npc.1_Missense_Mutation_p.R46K	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	378							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						ACCAGCAGCAGATGCAGACCA	0.493										HNSCC(51;0.14)			16	39					0	0	0.006122	0	0
IRS4	8471	broad.mit.edu	37	X	107979255	107979255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:107979255G>A	uc004eoc.2	-	1	353	c.320C>T	c.(319-321)GCT>GTT	p.A107V		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	107	PH.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						TTCCAGCCGAGCTGGGGCGTC	0.667													34	76					0	0	0.004878	0	0
GUCY2F	2986	broad.mit.edu	37	X	108718992	108718992	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:108718992C>T	uc004eod.3	-	2	450	c.174G>A	c.(172-174)GTG>GTA	p.V58V	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	58	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCCAAGGGCCCACCACCCCTA	0.557											OREG0019905	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	57					0	0	0.006230	0	0
TMEM164	84187	broad.mit.edu	37	X	109414665	109414666	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:109414665_109414666CC>TT	uc004eom.2	+	6	923_924	c.604_605CC>TT	c.(604-606)CCC>TTC	p.P202F	TMEM164_uc004eol.2_Missense_Mutation_p.P53F|TMEM164_uc010npq.2_Missense_Mutation_p.P163F	NM_032227	NP_115603	Q5U3C3	TM164_HUMAN	transmembrane protein 164 isoform b	202						integral to membrane				large_intestine(1)|lung(1)|skin(1)	3						CACTCCAGAGCCCCTCAGCAGT	0.525													163	306					0	0	0.004672	0	0
CAPN6	827	broad.mit.edu	37	X	110497615	110497615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:110497615G>A	uc004epc.1	-	3	350	c.182C>T	c.(181-183)CCC>CTC	p.P61L	CAPN6_uc011msu.1_5'UTR	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	61	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						AATCAGATGGGGGTCATCACA	0.478													54	82					0	0	0.014410	0	0
TRPC5	7224	broad.mit.edu	37	X	111020051	111020051	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:111020051C>T	uc004epl.1	-	11	3331	c.2412G>A	c.(2410-2412)AAG>AAA	p.K804K		NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	804	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AAGTCTTTTTCTTGCAGCCTA	0.493													120	174					0	0	0.014410	0	0
TRPC5	7224	broad.mit.edu	37	X	111195442	111195442	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:111195442C>A	uc004epl.1	-	2	1126	c.207G>T	c.(205-207)TTG>TTT	p.L69F	TRPC5_uc004epm.1_Missense_Mutation_p.L69F	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	69	ANK 2.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CACTCCGGCCCAAGGGGTCCA	0.522													45	87					1.76056e-25	1.81761e-25	0.011902	1	0
ZCCHC16	340595	broad.mit.edu	37	X	111698246	111698246	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:111698246A>T	uc004epo.1	+	3	731	c.290A>T	c.(289-291)AAA>ATA	p.K97I		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	97							nucleic acid binding|zinc ion binding			ovary(1)	1						GCCCAGATCAAACTCTTTTTT	0.418													36	73					0	0	0.003755	0	0
KLHL13	90293	broad.mit.edu	37	X	117032885	117032885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:117032885G>A	uc004eql.2	-	7	2016	c.1954C>T	c.(1954-1956)CTT>TTT	p.L652F	KLHL13_uc004eqk.2_Missense_Mutation_p.L601F|KLHL13_uc011mtn.1_Missense_Mutation_p.L492F|KLHL13_uc011mto.1_Missense_Mutation_p.L646F|KLHL13_uc011mtp.1_Missense_Mutation_p.L654F|KLHL13_uc004eqm.2_Missense_Mutation_p.L601F|KLHL13_uc011mtq.1_Missense_Mutation_p.L636F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	652					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GGTGCAGAAAGAGGGGACTCT	0.413													48	84					0	0	0.014410	0	0
KLHL13	90293	broad.mit.edu	37	X	117043967	117043967	+	Silent	SNP	C	T	T	rs11540264		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:117043967C>T	uc004eql.2	-	5	725	c.663G>A	c.(661-663)AAG>AAA	p.K221K	KLHL13_uc004eqk.2_Silent_p.K170K|KLHL13_uc011mtn.1_Silent_p.K61K|KLHL13_uc011mto.1_Silent_p.K215K|KLHL13_uc011mtp.1_Silent_p.K223K|KLHL13_uc004eqm.2_Silent_p.K170K|KLHL13_uc011mtq.1_Silent_p.K205K	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	221	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CAGGAAAATTCTTCAAGACGA	0.428													48	89					0	0	0.014410	0	0
WDR44	54521	broad.mit.edu	37	X	117529212	117529212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:117529212G>A	uc004eqn.2	+	6	1383	c.958G>A	c.(958-960)GAA>AAA	p.E320K	WDR44_uc004eqo.2_Missense_Mutation_p.E320K|WDR44_uc011mtr.1_Missense_Mutation_p.E295K|WDR44_uc010nqi.2_Missense_Mutation_p.E30K	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	320						cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						ATATTTCCAGGAAAATGGAAA	0.348													16	16					0	0	0.003163	0	0
IL13RA1	3597	broad.mit.edu	37	X	117880926	117880927	+	Missense_Mutation	DNP	CC	TT	TT	rs141752835		TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:117880926_117880927CC>TT	uc004eqs.2	+	3	281_282	c.238_239CC>TT	c.(238-240)CCG>TTG	p.P80L	IL13RA1_uc004eqr.1_Missense_Mutation_p.P80L|IL13RA1_uc004eqt.1_Missense_Mutation_p.P80L	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	80	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						GAAAATAGCTCCGGAAACTCGT	0.396													32	94					0	0	0.004672	0	0
ZBTB33	10009	broad.mit.edu	37	X	119389153	119389153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:119389153G>A	uc004esn.1	+	2	2111	c.1883G>A	c.(1882-1884)GGG>GAG	p.G628E	ZBTB33_uc010nqm.1_Missense_Mutation_p.G628E	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	628	Interaction with CTNND1 (By similarity).|Required for DNA-binding (By similarity).				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCTCCAGTAGGGACCACTACA	0.378													56	88					0	0	0.014410	0	0
THOC2	57187	broad.mit.edu	37	X	122747528	122747528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:122747528G>A	uc004etu.2	-	35	4513	c.4481C>T	c.(4480-4482)CCG>CTG	p.P1494L	THOC2_uc004etv.3_5'Flank|THOC2_uc010nqt.1_RNA|THOC2_uc004etw.1_Missense_Mutation_p.P315L	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1494	Lys-rich.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GGTTAAGTCCGGTGGCACTTC	0.373													91	189					0	0	0.014410	0	0
OCRL	4952	broad.mit.edu	37	X	128692675	128692675	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:128692675C>T	uc004euq.2	+	7	670	c.505C>T	c.(505-507)CAG>TAG	p.Q169*	OCRL_uc004eur.2_Nonsense_Mutation_p.Q169*	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	169					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						TTCACAAAATCAGCCTACTGG	0.393													33	53					0	0	0.010818	0	0
BCORL1	63035	broad.mit.edu	37	X	129173184	129173184	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:129173184C>T	uc004evb.1	+	10	4659	c.4545C>T	c.(4543-4545)CCC>CCT	p.P1515P	BCORL1_uc004evc.1_Silent_p.P351P	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1515	ANK 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						GGGCCGATCCCACACTGGCTA	0.557													17	52					0	0	0.006122	0	0
SAGE1	55511	broad.mit.edu	37	X	134983803	134983803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:134983803C>T	uc004ezh.2	+	3	340	c.173C>T	c.(172-174)TCA>TTA	p.S58L	SAGE1_uc010nry.1_Missense_Mutation_p.S58L|SAGE1_uc011mvv.1_Missense_Mutation_p.S58L	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	58										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGACACTCTTCATCTAAGAGA	0.418													106	132					0	0	0.014410	0	0
FHL1	2273	broad.mit.edu	37	X	135288739	135288739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:135288739G>A	uc004ezo.2	+	2	248	c.148G>A	c.(148-150)GAC>AAC	p.D50N	FHL1_uc010nrz.2_Missense_Mutation_p.D50N|FHL1_uc004ezm.2_Intron|FHL1_uc004ezl.2_Missense_Mutation_p.D50N|FHL1_uc004ezq.2_Missense_Mutation_p.D50N|FHL1_uc011mvy.1_Missense_Mutation_p.D50N|FHL1_uc011mvz.1_Missense_Mutation_p.D50N|FHL1_uc004ezn.2_Missense_Mutation_p.D50N|FHL1_uc011mwa.1_Missense_Mutation_p.D79N|FHL1_uc011mwb.1_RNA|FHL1_uc004ezp.2_Missense_Mutation_p.D66N|FHL1_uc004ezr.2_5'Flank	NM_001159702	NP_001153174	Q13642	FHL1_HUMAN	four and a half LIM domains 1 isoform 1	50	LIM zinc-binding 1.				cell differentiation|cell growth|muscle organ development|organ morphogenesis	cytosol|nucleus|plasma membrane	protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					CATCGGTGCGGACTCCAAGGT	0.547													63	125					0	0	0.014410	0	0
GPR112	139378	broad.mit.edu	37	X	135480078	135480078	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:135480078G>A	uc004ezu.1	+	20	8514	c.8223G>A	c.(8221-8223)CAG>CAA	p.Q2741Q	GPR112_uc010nsb.1_Silent_p.Q2536Q	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2741	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGAATGAACAGATATTAGCGC	0.398													41	105					0	0	0.014410	0	0
GPR112	139378	broad.mit.edu	37	X	135480089	135480089	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:135480089T>G	uc004ezu.1	+	20	8525	c.8234T>G	c.(8233-8235)CTT>CGT	p.L2745R	GPR112_uc010nsb.1_Missense_Mutation_p.L2540R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2745	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATATTAGCGCTTATAACATAC	0.408													40	98					0	0	0.014410	0	0
ZIC3	7547	broad.mit.edu	37	X	136649796	136649796	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:136649796G>T	uc004fak.2	+	1	1451	c.946G>T	c.(946-948)GTC>TTC	p.V316F		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	316	Nuclear localization signal.|C2H2-type 2; atypical.				cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GTACAAACTGGTCAACCACAT	0.602													59	90					3.00467e-41	3.10684e-41	0.014410	1	0
MCF2	4168	broad.mit.edu	37	X	138697087	138697087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:138697087G>A	uc004fau.2	-	10	1610	c.1316C>T	c.(1315-1317)CCT>CTT	p.P439L	MCF2_uc004fav.2_Missense_Mutation_p.P439L|MCF2_uc011mwl.1_Missense_Mutation_p.P400L|MCF2_uc010nsh.1_Missense_Mutation_p.P439L|MCF2_uc011mwm.1_Missense_Mutation_p.P400L|MCF2_uc011mwn.1_Missense_Mutation_p.P584L|MCF2_uc004faw.2_Missense_Mutation_p.P499L|MCF2_uc011mwo.1_Missense_Mutation_p.P499L	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	439					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					CAAATTTTCAGGTGTGGGTAC	0.378													99	166					0	0	0.014410	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995273	140995273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:140995273C>T	uc004fbt.2	+	4	2369	c.2083C>T	c.(2083-2085)CCT>TCT	p.P695S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	695							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAAATTCCTCAGAGTCC	0.562										HNSCC(15;0.026)			46	100					0	0	0.011902	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291015	141291015	+	Silent	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:141291015C>T	uc004fbu.1	-	3	1107	c.759G>A	c.(757-759)CTG>CTA	p.L253L		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	253	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTACTGCATTCAGCACTTCCC	0.512										HNSCC(46;0.14)			89	139					0	0	0.014410	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596795	142596795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:142596795G>A	uc004fbw.2	-	2	363	c.275C>T	c.(274-276)TCT>TTT	p.S92F		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	92										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGATCCTTCAGATAAGTCTAC	0.433													71	139					0	0	0.014410	0	0
GABRA3	2556	broad.mit.edu	37	X	151532974	151532974	+	Silent	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:151532974G>A	uc010ntk.1	-	2	309	c.69C>T	c.(67-69)CTC>CTT	p.L23L		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	23					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGGTTCCAGGGAGAATATTAA	0.458													66	136					0	0	0.014410	0	0
BGN	633	broad.mit.edu	37	X	152770096	152770096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:152770096C>T	uc004fhr.1	+	2	179	c.7C>T	c.(7-9)CCC>TCC	p.P3S	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	3						proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGCCATGTGGCCCCTGTGGCG	0.637													12	29					0	0	0.010729	0	0
PLXNB3	5365	broad.mit.edu	37	X	153041612	153041612	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:153041612C>T	uc004fii.2	+	27	4846	c.4672C>T	c.(4672-4674)CAA>TAA	p.Q1558*	PLXNB3_uc010nuk.2_Nonsense_Mutation_p.Q1581*|PLXNB3_uc011mzd.1_Nonsense_Mutation_p.Q1197*|SRPK3_uc004fik.2_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1558	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GGTGTTGGACCAAGTCTACAA	0.677													3	11					0	0	0.004672	0	0
IDH3G	3421	broad.mit.edu	37	X	153053350	153053351	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:153053350_153053351GG>AA	uc004fip.2	-	7	653_654	c.467_468CC>TT	c.(466-468)ACC>ATT	p.T156I	IDH3G_uc004fio.2_Missense_Mutation_p.T98I|IDH3G_uc004fiq.2_Missense_Mutation_p.T156I|IDH3G_uc010num.2_Missense_Mutation_p.T98I|IDH3G_uc004fir.2_Missense_Mutation_p.T98I|IDH3G_uc004fit.1_Missense_Mutation_p.T156I|IDH3G_uc004fis.2_Missense_Mutation_p.T98I|IDH3G_uc004fiu.2_5'Flank	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	156					carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	CCTTGTGCCGGGTCACCACGCC	0.609													39	73					0	0	0.004672	0	0
PDZD4	57595	broad.mit.edu	37	X	153070250	153070250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:153070250C>T	uc004fiz.1	-	8	1118	c.868G>A	c.(868-870)GAA>AAA	p.E290K	PDZD4_uc004fiy.1_Missense_Mutation_p.E215K|PDZD4_uc004fix.2_Missense_Mutation_p.E194K|PDZD4_uc004fja.1_Missense_Mutation_p.E296K|PDZD4_uc011mze.1_Missense_Mutation_p.E181K	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	290						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAGCTCTCTTCGTTCCGGGTG	0.672													18	42					0	0	0.007413	0	0
SLC10A3	8273	broad.mit.edu	37	X	153716663	153716663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:153716663G>A	uc004flq.2	-	3	881	c.617C>T	c.(616-618)TCG>TTG	p.S206L	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Missense_Mutation_p.S177L|SLC10A3_uc004flp.2_Missense_Mutation_p.S206L	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	206					organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GCACCCAAACGAACACTTGTT	0.587													55	104					0	0	0.014410	0	0
F8	2157	broad.mit.edu	37	X	154157306	154157306	+	Missense_Mutation	SNP	C	T	T	rs142347597	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:154157306C>T	uc004fmt.2	-	14	4930	c.4759G>A	c.(4759-4761)GAT>AAT	p.D1587N		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1587	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TAGTGGTTATCCCAAGCAAGA	0.423													135	167					0	0	0.014410	0	0
ARID2	196528	broad.mit.edu	37	12	46245312	46245312	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr12:46245312delC	uc001ros.1	+	15	3406	c.3406delC	c.(3406-3408)CCCfs	p.P1136fs	ARID2_uc001ror.2_Frame_Shift_Del_p.P1136fs|ARID2_uc009zkg.1_Frame_Shift_Del_p.P592fs|ARID2_uc009zkh.1_Frame_Shift_Del_p.P763fs|ARID2_uc001rou.1_Frame_Shift_Del_p.P470fs	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1136					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TGCAATGCCACCCTCAGGGGG	0.507													50	95	---	---	---	---					
MYH7	4625	broad.mit.edu	37	14	23901706	23901706	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr14:23901706delT	uc001wjx.2	-	6	618	c.512delA	c.(511-513)AACfs	p.N171fs		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	171	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GATGGACTGGTTTTCTCTGTC	0.597													36	51	---	---	---	---					
ZNF224	7767	broad.mit.edu	37	19	44612231	44612231	+	Frame_Shift_Del	DEL	A	-	-	rs3746319	byFrequency	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr19:44612231delA	uc002oyh.1	+	6	2220	c.1918delA	c.(1918-1920)AAAfs	p.K640fs	uc002oyi.2_RNA	NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	640					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				TTCATTCTCTAAAGTGCAAGA	0.458													27	71	---	---	---	---					
MALL	7851	broad.mit.edu	37	2	110873312	110873312	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:110873312delC	uc002tfk.2	-	1	832	c.58delG	c.(58-60)GTCfs	p.V20fs	MALL_uc010fju.2_RNA	NM_005434	NP_005425	Q13021	MALL_HUMAN	mal, T-cell differentiation protein-like	20					cholesterol homeostasis	clathrin-coated vesicle|Golgi membrane|integral to membrane|membrane raft|plasma membrane	protein binding			ovary(1)|skin(1)	2				Epithelial(1;0.0546)|STAD - Stomach adenocarcinoma(1;0.18)		AACAGCGCGACCCCCGAGGGC	0.746													2	4	---	---	---	---					
HDAC4	9759	broad.mit.edu	37	2	240036880	240036881	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr2:240036880_240036881delCC	uc002vyk.3	-	13	2436_2437	c.1644_1645delGG	c.(1642-1647)AAGGAGfs	p.K548fs	HDAC4_uc010fyz.1_Frame_Shift_Del_p.K543fs|HDAC4_uc010zoa.1_Frame_Shift_Del_p.K548fs|HDAC4_uc010fza.2_Frame_Shift_Del_p.K553fs|HDAC4_uc010fyy.2_Frame_Shift_Del_p.K505fs|HDAC4_uc010znz.1_Frame_Shift_Del_p.K431fs	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	548_549					B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		GCGTGCGCCTCCTTCTGCCCCG	0.713													47	37	---	---	---	---					
FRG1B	284802	broad.mit.edu	37	20	29628226	29628226	+	Splice_Site	DEL	G	-	-	rs78710112	by1000genomes	TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr20:29628226delG	uc010ztl.1	+	3	171	c.139_splice	c.e3-1	p.G47_splice	FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site|FRG1B_uc010ztk.1_Splice_Site					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTTCACTTAGGGGAAAATGG	0.318													11	247	---	---	---	---					
SCAP	22937	broad.mit.edu	37	3	47461107	47461110	+	Frame_Shift_Del	DEL	TCTG	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr3:47461107_47461110delTCTG	uc003crh.1	-	13	1903_1906	c.1648_1651delCAGA	c.(1648-1653)CAGAGCfs	p.Q550fs	SCAP_uc011baz.1_Frame_Shift_Del_p.Q295fs|SCAP_uc003crg.2_Frame_Shift_Del_p.Q158fs	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	550_551	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		CCCAATGGGCTCTGTTCCGTCACC	0.652													19	59	---	---	---	---					
KIAA1530	57654	broad.mit.edu	37	4	1373970	1373970	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:1373970delT	uc003gde.3	+	11	2151	c.1704delT	c.(1702-1704)CGTfs	p.R568fs	KIAA1530_uc010ibv.2_Frame_Shift_Del_p.R119fs	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	568											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			ACTGGTGCCGTGCCCCGAGGC	0.677													13	33	---	---	---	---					
MLF1IP	79682	broad.mit.edu	37	4	185655201	185655202	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr4:185655201_185655202insC	uc003iwq.2	-	1	85_86	c.15_16insG	c.(13-18)GGGCGGfs	p.G5fs	MLF1IP_uc003iwr.1_Frame_Shift_Ins_p.G5fs	NM_024629	NP_078905	Q71F23	CENPU_HUMAN	MLF1 interacting protein	5_6	Nuclear localization signal (Potential).				CenH3-containing nucleosome assembly at centromere|interspecies interaction between organisms|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|condensed chromosome kinetochore|cytosol|nucleoplasm					0		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Hepatocellular(41;0.000519)|Colorectal(36;0.00172)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.0299)|all_hematologic(60;0.0592)|Medulloblastoma(177;0.146)		all cancers(43;7.83e-28)|Epithelial(43;2.56e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-11)|Colorectal(24;3.27e-06)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.16e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000252)|COAD - Colon adenocarcinoma(29;0.000512)|LUSC - Lung squamous cell carcinoma(40;0.01)|READ - Rectum adenocarcinoma(43;0.0419)		ggccgccgccgcccccgcgggg	0.589													3	3	---	---	---	---					
HIST1H1E	3008	broad.mit.edu	37	6	26156687	26156687	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr6:26156687delG	uc003ngq.2	+	1	129	c.69delG	c.(67-69)AAGfs	p.K23fs	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	23					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						TGAAGAAGAAGGCCCGCAAGT	0.652													37	135	---	---	---	---					
ACCN3	9311	broad.mit.edu	37	7	150748929	150748929	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chr7:150748929delA	uc003win.2	+	7	1615	c.1247delA	c.(1246-1248)GAGfs	p.E416fs	ACCN3_uc003wio.2_Frame_Shift_Del_p.E416fs|ACCN3_uc003wip.2_Frame_Shift_Del_p.E416fs|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	416	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATCTTCTTTGAGGCCCTCAAC	0.612													36	109	---	---	---	---					
ARHGAP6	395	broad.mit.edu	37	X	11162261	11162288	+	Frame_Shift_Del	DEL	TTGTTGTCATAAGGGGAGATGTCTCCGC	-	-			TCGA-EE-A3AF-06A-11D-A196-08	TCGA-EE-A3AF-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	e58eec67-7f63-4d6b-be04-9aede79e6f39	9ed906a6-2fe5-4725-918a-b6a211b4a267	g.chrX:11162261_11162288delTTGTTGTCATAAGGGGAGATGTCTCCGC	uc004cup.1	-	11	2861_2888	c.1988_2015delGCGGAGACATCTCCCCTTATGACAACAA	c.(1987-2016)AGCGGAGACATCTCCCCTTATGACAACAACfs	p.S663fs	ARHGAP6_uc004cuo.1_RNA|ARHGAP6_uc004cur.1_Frame_Shift_Del_p.S663fs|ARHGAP6_uc004cum.1_Frame_Shift_Del_p.S460fs|ARHGAP6_uc004cun.1_Frame_Shift_Del_p.S483fs|ARHGAP6_uc010neb.1_Frame_Shift_Del_p.S485fs|ARHGAP6_uc011mif.1_3'UTR	NM_013427	NP_038286	O43182	RHG06_HUMAN	Rho GTPase activating protein 6 isoform 1	663_672					actin filament polymerization|activation of phospholipase C activity|negative regulation of focal adhesion assembly|negative regulation of stress fiber assembly|Rho protein signal transduction	actin filament|cytosol	phospholipase activator activity|phospholipase binding|Rho GTPase activator activity|SH3 domain binding|SH3/SH2 adaptor activity			urinary_tract(1)|lung(1)	2						CACTGGGGAGTTGTTGTCATAAGGGGAGATGTCTCCGCTGGAGGCCTT	0.566											OREG0019666	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	103	---	---	---	---					
