Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FAM40A	85369	broad.mit.edu	37	1	110584240	110584240	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:110584240C>T	uc001dza.1	+	7	752	c.733C>T	c.(733-735)CGG>TGG	p.R245W	FAM40A_uc001dyz.1_Missense_Mutation_p.R150W|FAM40A_uc009wfp.1_Missense_Mutation_p.R69W	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	245						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		GAGGACCATGCGGCAGACCTT	0.592000													7	65					0	0	1.12685e-05	0	0
IGSF9	57549	broad.mit.edu	37	1	159900501	159900501	+	Silent	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:159900501G>A	uc001fur.2	-	14	1992	c.1794C>T	c.(1792-1794)ATC>ATT	p.I598I	IGSF9_uc001fuq.2_Silent_p.I582I|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	598	Fibronectin type-III 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			CAGACAAGACGATTTCGCTGA	0.607000													7	53					0	0	8.12818e-05	0	0
SEC61A2	55176	broad.mit.edu	37	10	12197846	12197846	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr10:12197846G>T	uc001ile.2	+	7	679	c.532G>T	c.(532-534)GGG>TGG	p.G178W	SEC61A2_uc010qbq.1_Missense_Mutation_p.G156W|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.G178W	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	178	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				CTTGGGGTCTGGGATTTCCCT	0.488000													15	847					0.000151284	0.00612149	0.000151284	1	0
USP54	159195	broad.mit.edu	37	10	75302825	75302825	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr10:75302825G>A	uc001juo.2	-	4	457	c.440C>T	c.(439-441)GCC>GTC	p.A147V	USP54_uc001jum.2_5'Flank|USP54_uc001jun.2_RNA|USP54_uc001jup.2_Missense_Mutation_p.A147V|USP54_uc010qkl.1_Missense_Mutation_p.A147V|USP54_uc001juq.1_5'Flank	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	147					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity	p.A147V(1)		breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					GCAGTGTTGGGCAGTACATAT	0.388000													11	85					0	0	2.31682e-05	0	0
SLC17A6	57084	broad.mit.edu	37	11	22391731	22391731	+	Silent	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr11:22391731C>T	uc001mqk.2	+	8	1451	c.1038C>T	c.(1036-1038)AGC>AGT	p.S346S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	346	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TTGAAATTAGCAAGGTATGTA	0.279000													6	52					0	0	1.12685e-05	0	0
OR5T3	390154	broad.mit.edu	37	11	56020308	56020308	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr11:56020308G>C	uc010rjd.1	+	1	633	c.633G>C	c.(631-633)ATG>ATC	p.M211I		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	211	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTTGTGATATGCCTCCTCTCC	0.413000													23	190					0	0	4.16121e-05	0	0
DNAJC14	85406	broad.mit.edu	37	12	56221557	56221557	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr12:56221557C>G	uc001shx.1	-	2	1090	c.886G>C	c.(886-888)GGG>CGG	p.G296R	DNAJC14_uc001shu.1_Missense_Mutation_p.G296R|DNAJC14_uc009zob.1_Missense_Mutation_p.G296R|DNAJC14_uc001shy.1_Missense_Mutation_p.G296R	NM_032364	NP_115740	Q6Y2X3	DJC14_HUMAN	dopamine receptor interacting protein	296					protein folding|protein transport	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|unfolded protein binding			ovary(3)|large_intestine(1)	4						CCTAACCGCCCTGTCCACACT	0.507000													3	93					0	0	0.00024832	0	0
TXNRD1	7296	broad.mit.edu	37	12	104712772	104712772	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr12:104712772G>A	uc010swk.1	+	8	834	c.812G>A	c.(811-813)CGG>CAG	p.R271Q	TXNRD1_uc010swl.1_Missense_Mutation_p.R121Q|TXNRD1_uc010swm.1_Missense_Mutation_p.R173Q|TXNRD1_uc010swn.1_Missense_Mutation_p.R121Q|TXNRD1_uc010swo.1_Missense_Mutation_p.R121Q|TXNRD1_uc010swp.1_Missense_Mutation_p.R83Q|TXNRD1_uc010swq.1_Missense_Mutation_p.R171Q|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.R187Q	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	271					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						GTAGCTCTGCGGGAGAAAAAA	0.383000													7	64					0	0	0.000157383	0	0
FRY	10129	broad.mit.edu	37	13	32768296	32768296	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr13:32768296G>A	uc001utx.2	+	29	4104	c.3608G>A	c.(3607-3609)TGC>TAC	p.C1203Y	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CAACTTGGCTGCGAAGTTGTT	0.368000													16	86					0	0	7.07596e-05	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													3	6					0	0	6.4e-05	0	0
CACNG3	10368	broad.mit.edu	37	16	24366269	24366269	+	Silent	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr16:24366269C>T	uc002dmf.2	+	3	1611	c.411C>T	c.(409-411)AGC>AGT	p.S137S		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	137	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TCATTCTCAGCGCGGGCATCT	0.577000													6	38					0	0	8.12818e-05	0	0
FXR2	9513	broad.mit.edu	37	17	7497597	7497597	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr17:7497597G>A	uc002gia.1	-	10	1206	c.979C>T	c.(979-981)CGA>TGA	p.R327*	FXR2_uc010vud.1_Nonsense_Mutation_p.R327*	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	327						cytosolic large ribosomal subunit	protein binding|RNA binding				0				READ - Rectum adenocarcinoma(115;0.17)		CCTTCCACTCGAACCCTCACC	0.468000													6	26					0	0	1.12685e-05	0	0
LPIN2	9663	broad.mit.edu	37	18	2960762	2960762	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr18:2960762G>C	uc002klo.2	-	2	316	c.77C>G	c.(76-78)ACC>AGC	p.T26S		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	26	N-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		CCCAGAGAGGGTGGCCTGGTT	0.493000													8	41					0	0	3.86212e-05	0	0
DSG3	1830	broad.mit.edu	37	18	29041337	29041337	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr18:29041337G>A	uc002kws.2	+	8	1070	c.961G>A	c.(961-963)GAT>AAT	p.D321N		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	321	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AATACAAACTGATCCTAGAAC	0.343000													8	52					0	0	3.86212e-05	0	0
NUP62	23636	broad.mit.edu	37	19	50412893	50412893	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr19:50412893C>A	uc002pqx.2	-	2	276	c.172G>T	c.(172-174)GGC>TGC	p.G58C	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Missense_Mutation_p.G58C|NUP62_uc002pqz.2_Missense_Mutation_p.G58C|NUP62_uc002pra.2_Missense_Mutation_p.G58C|NUP62_uc002prb.2_Missense_Mutation_p.G58C|NUP62_uc002prc.2_Missense_Mutation_p.G58C	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	58	5.|15 X 9 AA approximate repeats.|Thr-rich.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GAGAACAGGCCGGTGGAAGGG	0.547000													17	147					1.64113e-05	0.000698113	0.000175454	1	0
ZNF665	79788	broad.mit.edu	37	19	53668376	53668376	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr19:53668376T>C	uc010eqm.1	-	4	1467	c.1367A>G	c.(1366-1368)AAG>AGG	p.K456R		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	391					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TTTGTAAGGCTTTTCTCCAGT	0.428000													3	77					0	0	6.4e-05	0	0
ALMS1	7840	broad.mit.edu	37	2	73677777	73677777	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr2:73677777A>G	uc002sje.1	+	10	4237	c.4126A>G	c.(4126-4128)ACT>GCT	p.T1376A	ALMS1_uc002sjf.1_Missense_Mutation_p.T1332A|ALMS1_uc002sjg.2_Missense_Mutation_p.T762A|ALMS1_uc002sjh.1_Missense_Mutation_p.T762A	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1374	18.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TGGCACACCAACTGTAACCTC	0.443000													3	86					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179504471	179504471	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr2:179504471G>A	uc010zfg.1	-	172	33351	c.33127C>T	c.(33127-33129)CCC>TCC	p.P11043S	TTN_uc010zfh.1_Missense_Mutation_p.P4738S|TTN_uc010zfi.1_Missense_Mutation_p.P4671S|TTN_uc010zfj.1_Missense_Mutation_p.P4546S|TTN_uc010fre.1_Missense_Mutation_p.P921S|TTN_uc002umw.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11970							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGCGATGGGGGTTGGTTCA	0.403000													7	40					0	0	2.17888e-05	0	0
CCDC141	285025	broad.mit.edu	37	2	179730634	179730634	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr2:179730634T>C	uc002unf.1	-	7	916	c.859A>G	c.(859-861)AAT>GAT	p.N287D		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	287	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCAGAAACATTAGAGCAGTGC	0.468000													4	156					0	0	3.59834e-05	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20616254	20616254	+	Silent	SNP	G	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr20:20616254G>T	uc002wrz.2	-	9	956	c.813C>A	c.(811-813)CCC>CCA	p.P271P	RALGAPA2_uc010gcx.2_5'UTR|RALGAPA2_uc010zsg.1_5'UTR	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	271					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GTCTCAAATGGGGGATGTCTG	0.338000													20	123					3.10358e-05	0.00128721	3.10358e-05	1	0
ATP9A	10079	broad.mit.edu	37	20	50235227	50235227	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr20:50235227C>A	uc002xwg.1	-	21	2324	c.2324G>T	c.(2323-2325)CGC>CTC	p.R775L	ATP9A_uc010gih.1_Missense_Mutation_p.R639L|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	775	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						CTTGCCCGTGCGCTCCTGAAG	0.647000													6	132					2.7689e-08	1.20884e-06	8.12818e-05	1	0
C22orf36	388886	broad.mit.edu	37	22	24982184	24982184	+	Silent	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr22:24982184C>T	uc003aaq.2	-	4	647	c.618G>A	c.(616-618)GCG>GCA	p.A206A	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_RNA|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	206											0						GGCGGGGCAGCGCCCACAGGC	0.657000													8	79					0	0	2.17888e-05	0	0
GALNTL2	117248	broad.mit.edu	37	3	16237310	16237310	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:16237310G>A	uc003car.3	+	2	1058	c.583G>A	c.(583-585)GTC>ATC	p.V195I	GALNTL2_uc003caq.3_5'UTR	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	195	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CACAGCCAGCGTCATCCTCTG	0.587000													5	51					0	0	1.23904e-05	0	0
GORASP1	64689	broad.mit.edu	37	3	39144332	39144332	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:39144332T>C	uc003ciw.1	-	3	283	c.185A>G	c.(184-186)AAT>AGT	p.N62S	GORASP1_uc003civ.1_RNA|GORASP1_uc003cix.1_RNA|GORASP1_uc003ciy.1_RNA|GORASP1_uc011ayw.1_Intron|GORASP1_uc003ciz.1_Intron	NM_031899	NP_114105	Q9BQQ3	GORS1_HUMAN	Golgi reassembly stacking protein 1	62	PDZ.				mitotic prophase|protein transport	cytosol|Golgi apparatus|membrane				ovary(2)|central_nervous_system(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		CTTCTCCACATTGGCTTTCAG	0.592000													14	141					0	0	3.45872e-05	0	0
PARP14	54625	broad.mit.edu	37	3	122419866	122419866	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:122419866C>G	uc003efq.3	+	6	2524	c.2465C>G	c.(2464-2466)GCA>GGA	p.A822G	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.A539G|PARP14_uc003efs.1_Missense_Mutation_p.A539G	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	822	Macro 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		GTGGTGAATGCATCTAATGAG	0.572000													11	62					0	0	6.40141e-05	0	0
TLL1	7092	broad.mit.edu	37	4	166981216	166981216	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:166981216C>T	uc003irh.1	+	15	2530	c.1883C>T	c.(1882-1884)ACC>ATC	p.T628I	TLL1_uc011cjn.1_Missense_Mutation_p.T651I|TLL1_uc011cjo.1_Missense_Mutation_p.T452I	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	628	CUB 3.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTTAACGGCACCATAACCACC	0.463000													6	45					0	0	3.59834e-05	0	0
BTN3A3	10384	broad.mit.edu	37	6	26444257	26444257	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr6:26444257A>C	uc003nhz.2	+	4	338	c.158A>C	c.(157-159)CAC>CCC	p.H53P	BTN3A3_uc003nia.2_Missense_Mutation_p.H11P|BTN3A3_uc011dkn.1_Missense_Mutation_p.H11P	NM_006994	NP_008925	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3 isoform a	53	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0						CTGCCCTGTCACCTGTTCCCG	0.567000													17	114					0	0	9.7654e-05	0	0
L3MBTL3	84456	broad.mit.edu	37	6	130407387	130407388	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr6:130407387_130407388CG>AT	uc003qbt.2	+	16	1680_1681	c.1510_1511CG>AT	c.(1510-1512)CGG>ATG	p.R504M	L3MBTL3_uc003qbu.2_Missense_Mutation_p.R479M	NM_032438	NP_115814	Q96JM7	LMBL3_HUMAN	l(3)mbt-like 3 isoform a	504	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.0266)|OV - Ovarian serous cystadenocarcinoma(155;0.154)		AGATGATCACCGGGTAAAAGTA	0.386000													8	260					0	0	6.4e-05	0	0
LPA	4018	broad.mit.edu	37	6	161026216	161026217	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr6:161026216_161026217CC>AA	uc003qtl.2	-	19	2926_2927	c.2806_2807GG>TT	c.(2806-2808)GGG>TTG	p.G936L		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3444	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CTCCTGCACCCCAGGCCTTTGC	0.450000													9	309					0	0	6.4e-05	0	0
PAPOLB	56903	broad.mit.edu	37	7	4900243	4900244	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr7:4900243_4900244CG>AT	uc003snk.2	-	1	1382_1383	c.1198_1199CG>AT	c.(1198-1200)CGA>ATA	p.R400I	RADIL_uc003sng.1_Intron|RADIL_uc011jwd.1_Intron|RADIL_uc003snj.1_Intron	NM_020144	NP_064529	Q9NRJ5	PAPOB_HUMAN	poly(A) polymerase beta (testis specific)	399		Interaction with RNA (By similarity).			mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.089)|OV - Ovarian serous cystadenocarcinoma(56;2.06e-14)		AACCAGGATTCGGATCTTTGAT	0.396000													8	203					0	0	6.4e-05	0	0
ZNF804B	219578	broad.mit.edu	37	7	88964944	88964944	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr7:88964944T>C	uc011khi.1	+	4	3186	c.2648T>C	c.(2647-2649)CTG>CCG	p.L883P		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	883						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ATTTGTGATCTGGGAAAAGTC	0.433000										HNSCC(36;0.09)			7	44					0	0	8.12818e-05	0	0
ZNF804B	219578	broad.mit.edu	37	7	88966031	88966031	+	Silent	SNP	T	C	C			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr7:88966031T>C	uc011khi.1	+	4	4273	c.3735T>C	c.(3733-3735)CCT>CCC	p.P1245P		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1245						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ATTTCAGTCCTATTTCATTTT	0.473000										HNSCC(36;0.09)			23	82					0	0	5.49717e-05	0	0
VPS13B	157680	broad.mit.edu	37	8	100568870	100568870	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr8:100568870T>G	uc003yiv.2	+	31	5124	c.5013T>G	c.(5011-5013)AAT>AAG	p.N1671K	VPS13B_uc003yiw.2_Missense_Mutation_p.N1646K	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1671					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTGAGTGGAATATGGCCAGCA	0.428000													23	30					0	0	7.16444e-05	0	0
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr9:20414343A>G	uc003zoe.2	-	5	760	c.501T>C	c.(499-501)AGT>AGC	p.S167S	MLLT3_uc011lne.1_Silent_p.S135S|MLLT3_uc011lnf.1_Silent_p.S164S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.V129A	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.139000			T	MLL	ALL								3	42					0	0	6.4e-05	0	0
ZNF275	10838	broad.mit.edu	37	X	152612596	152612596	+	Silent	SNP	C	T	T			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chrX:152612596C>T	uc004fhg.1	+	4	630	c.453C>T	c.(451-453)CAC>CAT	p.H151H	ZNF275_uc011mym.1_Silent_p.H151H|ZNF275_uc011myn.1_Silent_p.H88H			A6NFS0	A6NFS0_HUMAN	SubName: Full=cDNA FLJ16723 fis, clone UTERU3004418, highly similar to Zinc finger protein 275; SubName: Full=Putative uncharacterized protein ZNF275;	151						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGAAAAGCCACGTAGCTGCGG	0.627000													8	35					0	0	1.12685e-05	0	0
TMEM54	113452	broad.mit.edu	37	1	33361571	33361572	+	Splice_Site	INS	-	TG	TG			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr1:33361571_33361572insTG	uc001bwi.1	-	3	325	c.211_splice	c.e3-1	p.V71_splice	TMEM54_uc001bwj.1_Intron|TMEM54_uc001bwk.1_Intron	NM_033504	NP_277039	Q969K7	TMM54_HUMAN	transmembrane protein 54							integral to membrane					0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AAGTGATGACCTGTAGGGAAGG	0.609													9	29	---	---	---	---					
EIF4A2	1974	broad.mit.edu	37	3	186507006	186507007	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr3:186507006_186507007delTC	uc003fqs.2	+	11	1211_1212	c.1172_1173delTC	c.(1171-1173)TTCfs	p.F391fs	EIF4A2_uc003fqt.2_RNA|EIF4A2_uc003fqu.2_Frame_Shift_Del_p.F392fs|EIF4A2_uc003fqv.2_Frame_Shift_Del_p.F296fs|EIF4A2_uc003fqw.2_Frame_Shift_Del_p.F296fs|EIF4A2_uc011bsb.1_3'UTR	NM_001967	NP_001958	Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	391	Helicase C-terminal.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			ovary(2)|breast(2)	4	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		ATTGAGACTTTCTACAATACTA	0.446			T	BCL6	NHL								23	222	---	---	---	---					
ZNF518B	85460	broad.mit.edu	37	4	10445874	10445874	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:10445874delC	uc003gmn.2	-	3	2566	c.2079delG	c.(2077-2079)GGGfs	p.G693fs		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	693					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TTGATGCCTGCCCTACAGAGC	0.458													15	72	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	GGC	GGC	rs67907220		TCGA-ER-A196-01A-11D-A197-08	TCGA-ER-A196-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	a0b4e60a-7023-429a-89c4-2e6782a64a9b	42380b0d-4a82-4698-953c-6277122a00c6	g.chr4:147560457_147560458insGGC	uc003ikv.2	+	1	413_414	c.165_166insGGC	c.(163-168)insGGC	p.68_69insG		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	68_69					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.386													5	6	---	---	---	---					
