Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483000													4	230					0	0	0.000602214	0	0
FBXO42	54455	broad.mit.edu	37	1	16577944	16577944	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:16577944G>A	uc001ayg.2	-	10	1591	c.1375C>T	c.(1375-1377)CCT>TCT	p.P459S	FBXO42_uc001aye.3_Missense_Mutation_p.P177S|FBXO42_uc001ayf.2_Missense_Mutation_p.P366S	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	459										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GCCTGTACAGGACTGTCCAAA	0.542000													14	11					0	0	0.000308642	0	0
C1QA	712	broad.mit.edu	37	1	22965688	22965688	+	Missense_Mutation	SNP	G	A	A	rs45454296		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:22965688G>A	uc001bfy.2	+	3	611	c.526G>A	c.(526-528)GTC>ATC	p.V176I	C1QA_uc001bfz.2_Missense_Mutation_p.V176I	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	176	C1q.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCTGTCCATCGTCTCCTCCTC	0.602000													22	34					0	0	9.22233e-05	0	0
CNR2	1269	broad.mit.edu	37	1	24201505	24201505	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:24201505G>A	uc001bif.2	-	2	730	c.603C>T	c.(601-603)CTC>CTT	p.L201L		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	201	Helical; Name=5; (Potential).			L->P: Abolishes ligand binding and agonist-induced inhibitory effect on adenylate cyclase.	behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	TTCCGGAAAAGAGGAAGGCGA	0.572000													13	18					0	0	0.000151284	0	0
PCSK9	255738	broad.mit.edu	37	1	55525203	55525203	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:55525203G>A	uc001cyf.1	+	10	1839	c.1548G>A	c.(1546-1548)GGG>GGA	p.G516G	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	516					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						ACGCTTTTGGGGGTGAGGGTG	0.597000													38	92					0	0	0.000228196	0	0
GBP5	115362	broad.mit.edu	37	1	89732246	89732246	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:89732246G>A	uc001dnc.2	-	7	1188	c.651C>T	c.(649-651)TTC>TTT	p.F217F	GBP5_uc001dnd.2_Silent_p.F217F|GBP5_uc001dne.1_Silent_p.F217F	NM_052942	NP_443174	Q96PP8	GBP5_HUMAN	guanylate-binding protein 5	217						plasma membrane	GTP binding|GTPase activity			ovary(1)	1				all cancers(265;0.00784)|Epithelial(280;0.0286)		GGGGCAAATTGAAATTTTGAA	0.328000													35	62					0	0	0.000191422	0	0
KIAA1324	57535	broad.mit.edu	37	1	109716166	109716167	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:109716166_109716167CC>AA	uc001dwq.2	+	7	903_904	c.767_768CC>AA	c.(766-768)CCC>CAA	p.P256Q	KIAA1324_uc009wex.1_Missense_Mutation_p.P256Q|KIAA1324_uc009wey.2_Missense_Mutation_p.P256Q|KIAA1324_uc010ovg.1_Missense_Mutation_p.P154Q	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	256	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		ACCAAAGTACCCAAGCCTGTGC	0.480000													9	233					0	0	6.4e-05	0	0
RFX5	5993	broad.mit.edu	37	1	151314838	151314838	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:151314838G>A	uc001exv.1	-	11	1889	c.1675C>T	c.(1675-1677)CCC>TCC	p.P559S	RFX5_uc001exw.1_Missense_Mutation_p.P559S|RFX5_uc009wmr.1_Missense_Mutation_p.P559S|RFX5_uc010pcx.1_Missense_Mutation_p.P519S	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	559						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GGGACCAAGGGAATTTTATCT	0.522000													53	71					0	0	0.000147903	0	0
TCHH	7062	broad.mit.edu	37	1	152082200	152082200	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:152082200C>T	uc001ezp.2	-	2	3493	c.3493G>A	c.(3493-3495)GAG>AAG	p.E1165K	TCHH_uc009wne.1_Missense_Mutation_p.E1165K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1165	4-9.|10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTCTCCAGCTCCTGGCGCCTT	0.174000													5	12					0	0	0.000602214	0	0
S100A9	6280	broad.mit.edu	37	1	153333147	153333147	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:153333147G>A	uc001fbq.2	+	3	221	c.178G>A	c.(178-180)GAA>AAA	p.E60K		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	60	EF-hand 2.				cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAAGGTCATAGAACACATCAT	0.542000													21	48					0	0	0.000375601	0	0
ILF2	3608	broad.mit.edu	37	1	153636877	153636877	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:153636877C>G	uc001fcr.2	-	9	732	c.651G>C	c.(649-651)CAG>CAC	p.Q217H	ILF2_uc010pdy.1_Missense_Mutation_p.Q179H|ILF2_uc009wok.2_Missense_Mutation_p.Q195H	NM_004515	NP_004506	Q12905	ILF2_HUMAN	interleukin enhancer binding factor 2	217	DZF.				immune response|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|ribonucleoprotein complex	ATP binding|DNA binding|double-stranded RNA binding|protein binding|transferase activity				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CTCACGTGGACTGAGAAGCAT	0.443000													21	61					0	0	0.000375601	0	0
LY9	4063	broad.mit.edu	37	1	160766021	160766021	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:160766021C>T	uc001fwu.2	+	1	94	c.44C>T	c.(43-45)CCT>CTT	p.P15L	LY9_uc001fwt.2_Missense_Mutation_p.P15L|LY9_uc010pjs.1_Missense_Mutation_p.P15L|LY9_uc001fwv.2_Missense_Mutation_p.P15L|LY9_uc001fww.2_Missense_Mutation_p.P15L|LY9_uc001fwx.2_Missense_Mutation_p.P15L	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	15					cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GCTCCTGGGCCTTTCTCCAGT	0.493000													37	42					0	0	0.00058488	0	0
SLC9A11	284525	broad.mit.edu	37	1	173550993	173550993	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:173550993G>A	uc001giz.2	-	7	1218	c.795C>T	c.(793-795)TTC>TTT	p.F265F	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	265	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TACCAATATAGAAAGTCATGT	0.318000													13	25					0	0	0.000422831	0	0
FAM5C	339479	broad.mit.edu	37	1	190250829	190250829	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:190250829G>A	uc001gse.1	-	3	520	c.288C>T	c.(286-288)TTC>TTT	p.F96F	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	96						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAGAGCCAAGGAAATTTCTTC	0.403000													15	28					0	0	7.07596e-05	0	0
FAM58B	339521	broad.mit.edu	37	1	200183113	200183113	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:200183113C>T	uc009wzi.1	+	1	458	c.422C>T	c.(421-423)TCC>TTC	p.S141F		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	141					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					TTCCAGGTCTCCTTCCAGCAT	0.602000													27	32					0	0	0.000147802	0	0
PM20D1	148811	broad.mit.edu	37	1	205814680	205814680	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:205814680G>A	uc001hdj.2	-	3	307	c.262C>T	c.(262-264)CCT>TCT	p.P88S	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	88						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			ACCACTGTAGGAAAGACTAGA	0.463000													16	35					0	0	0.000308642	0	0
USH2A	7399	broad.mit.edu	37	1	216371818	216371818	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:216371818G>A	uc001hku.1	-	18	4307	c.3920C>T	c.(3919-3921)TCA>TTA	p.S1307L	USH2A_uc001hkv.2_Missense_Mutation_p.S1307L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1307	Fibronectin type-III 3.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTCTACAAATGAATGAGGACT	0.398000										HNSCC(13;0.011)			11	27					0	0	6.40141e-05	0	0
OR2G6	391211	broad.mit.edu	37	1	248685628	248685628	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:248685628G>A	uc001ien.1	+	1	681	c.681G>A	c.(679-681)AGG>AGA	p.R227R		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGTGTTAAGGATAAAATCAG	0.463000													67	48					0	0	0.000147903	0	0
OR14I1	401994	broad.mit.edu	37	1	248845069	248845069	+	Silent	SNP	G	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr1:248845069G>T	uc001ieu.1	-	1	537	c.537C>A	c.(535-537)ATC>ATA	p.I179I		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACACATGAGGGATGTCACGGA	0.512000													9	22					2.17888e-05	0.000335179	0.000442599	1	0
VIM	7431	broad.mit.edu	37	10	17277272	17277272	+	Silent	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:17277272T>C	uc001iou.2	+	7	1526	c.1113T>C	c.(1111-1113)AAT>AAC	p.N371N	VIM_uc001iov.1_Silent_p.N371N|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Silent_p.N371N|VIM_uc001ioy.1_Intron|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Silent_p.N329N|VIM_uc001ipc.1_Silent_p.N371N	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	371	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						AGATTCAGAATATGAAGGAGG	0.493000													4	120					0	0	3.59834e-05	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37488708	37488708	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:37488708G>A	uc001iza.1	+	30	2701	c.2602G>A	c.(2602-2604)GAT>AAT	p.D868N		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	924						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAATTCTTGGGATTCTGAGGT	0.299000													12	15					0	0	0.000566183	0	0
SYT15	83849	broad.mit.edu	37	10	46969424	46969424	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:46969424T>A	uc001jea.2	-	2	190	c.37A>T	c.(37-39)ATC>TTC	p.I13F	SYT15_uc001jdz.2_Missense_Mutation_p.I13F|SYT15_uc001jeb.2_Intron|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	13	Helical; Signal-anchor for type III membrane protein; (Potential).					integral to membrane|plasma membrane					0						AGCCCCCCGATGGTGCCCCCA	0.637000													7	2					0	0	0.000157383	0	0
ANK3	288	broad.mit.edu	37	10	61835300	61835300	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:61835300G>A	uc001jky.2	-	37	5531	c.5339C>T	c.(5338-5340)TCA>TTA	p.S1780L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1780	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGAAACATATGACCTGAGTGG	0.473000													47	36					0	0	0.000147903	0	0
CCAR1	55749	broad.mit.edu	37	10	70502219	70502219	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:70502219C>T	uc001joo.2	+	6	530	c.411C>T	c.(409-411)TCC>TCT	p.S137S	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_5'UTR|CCAR1_uc009xpx.1_Silent_p.S111S|CCAR1_uc001jon.1_Silent_p.S83S|CCAR1_uc010qiz.1_Silent_p.S122S|CCAR1_uc010qja.1_Silent_p.S122S|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	137					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding	p.S137C(1)		ovary(6)|large_intestine(1)	7						CACCAAGGTCCAGTCAACAGC	0.438000													32	20					0	0	0.000409698	0	0
ATRNL1	26033	broad.mit.edu	37	10	117001410	117001410	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr10:117001410T>G	uc001lcg.2	+	10	1969	c.1583T>G	c.(1582-1584)CTT>CGT	p.L528R		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	528	Kelch 4.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TCAGCTGTTCTTATCAATGGA	0.358000													26	25					0	0	0.000279167	0	0
KCNQ1	3784	broad.mit.edu	37	11	2593264	2593264	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:2593264C>T	uc001lwn.2	+	5	813	c.705C>T	c.(703-705)ATC>ATT	p.I235I	KCNQ1_uc009ydp.1_Silent_p.I19I|KCNQ1_uc001lwo.2_Silent_p.I108I	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	235	Helical; Voltage-sensor; Name=Segment S4; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TCCTGCAGATCCTGAGGATGC	0.687000													91	37					0	0	0.000147903	0	0
OR10A4	283297	broad.mit.edu	37	11	6898649	6898649	+	Silent	SNP	C	T	T	rs146451877		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:6898649C>T	uc010rat.1	+	1	771	c.771C>T	c.(769-771)ATC>ATT	p.I257I		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCACTGCCATCCTCACGTATT	0.527000													50	17					0	0	0.000147903	0	0
OR2D2	120776	broad.mit.edu	37	11	6913201	6913201	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:6913201G>A	uc010rau.1	-	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCTCACAAAAGAAATGAGCAA	0.493000													14	6					0	0	0.000308642	0	0
OR4A47	403253	broad.mit.edu	37	11	48510479	48510479	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:48510479G>A	uc010rhx.1	+	1	135	c.135G>A	c.(133-135)GTG>GTA	p.V45V		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCATTGTAGTGACCGTAACTG	0.418000													23	11					0	0	0.000117367	0	0
LRP5	4041	broad.mit.edu	37	11	68192666	68192666	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:68192666C>T	uc001ont.2	+	15	3408	c.3333C>T	c.(3331-3333)CTC>CTT	p.L1111L	LRP5_uc009ysg.2_Silent_p.L521L	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1111	LDL-receptor class B 18.|Beta-propeller 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CCACCGGCCTCATCCGCCCTG	0.637000													17	6					0	0	9.7654e-05	0	0
C2CD3	26005	broad.mit.edu	37	11	73753120	73753120	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:73753120G>A	uc001ouu.2	-	29	5866	c.5639C>T	c.(5638-5640)ACC>ATC	p.T1880I	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1880						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					CAGAATGGAGGTTTGGGAGGA	0.493000													38	17					0	0	0.000437636	0	0
C11orf70	85016	broad.mit.edu	37	11	101929619	101929619	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:101929619C>T	uc001pgp.2	+	3	229	c.201C>T	c.(199-201)TTC>TTT	p.F67F	C11orf70_uc001pgo.2_Silent_p.F67F|C11orf70_uc001pgq.2_Silent_p.F29F	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	67										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		AGGCTTTTTTCAAAGACCCAA	0.239000													26	10					0	0	0.000409698	0	0
ELMOD1	55531	broad.mit.edu	37	11	107506367	107506367	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:107506367G>A	uc010rvs.1	+	6	700	c.296G>A	c.(295-297)GGA>GAA	p.G99E	ELMOD1_uc001pjm.2_Missense_Mutation_p.G99E|ELMOD1_uc010rvt.1_Missense_Mutation_p.G93E	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	99					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		CCTAGGCTGGGAATCTCTCTT	0.433000													74	24					0	0	0.000147903	0	0
SCN3B	55800	broad.mit.edu	37	11	123516298	123516298	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr11:123516298G>A	uc001pza.1	-	3	623	c.216C>T	c.(214-216)TTC>TTT	p.F72F	SCN3B_uc001pzb.1_Silent_p.F72F	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	72	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		AACATACAAGGAAATCTTTAC	0.572000													35	22					0	0	0.000270559	0	0
CD163	9332	broad.mit.edu	37	12	7640410	7640410	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr12:7640410C>T	uc001qsz.3	-	7	1822	c.1694G>A	c.(1693-1695)GGA>GAA	p.G565E	CD163_uc001qta.3_Missense_Mutation_p.G565E|CD163_uc009zfw.2_Missense_Mutation_p.G565E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	565	SRCR 5.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCTACAAGTTCCTTCTGGGCG	0.498000													35	49					0	0	0.000270559	0	0
ZNF385A	25946	broad.mit.edu	37	12	54764795	54764795	+	Silent	SNP	C	T	T	rs143375749	byFrequency	TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr12:54764795C>T	uc001sfw.1	-	5	873	c.690G>A	c.(688-690)GGG>GGA	p.G230G	ZNF385A_uc001sfv.1_Silent_p.G211G|ZNF385A_uc009zno.1_RNA|ZNF385A_uc010sov.1_Silent_p.G149G|ZNF385A_uc001sfx.1_Silent_p.G230G|ZNF385A_uc001sfy.3_Silent_p.G250G|ZNF385A_uc001sfz.3_Silent_p.G169G	NM_015481	NP_056296	Q96PM9	Z385A_HUMAN	zinc finger protein 385A isoform c	230					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding|zinc ion binding			ovary(1)	1						CCTCTGGTTCCCCCGGGGTGG	0.597000													50	77					0	0	0.000147903	0	0
ACSS3	79611	broad.mit.edu	37	12	81624906	81624906	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr12:81624906G>A	uc001szl.1	+	12	1676	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	ACSS3_uc001szm.1_Missense_Mutation_p.E528K|ACSS3_uc001szn.1_Missense_Mutation_p.E211K	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	529						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						TTTATACTTTGAAAAATTTCC	0.294000													22	39					0	0	0.000229342	0	0
NEK5	341676	broad.mit.edu	37	13	52639643	52639643	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr13:52639643G>A	uc001vge.2	-	22	2167	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F		NM_199289	NP_954983	Q6P3R8	NEK5_HUMAN	NIMA-related kinase 5	676							ATP binding|metal ion binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)	1		Breast(56;0.00173)|Lung NSC(96;0.0168)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.7e-08)		GGGGCAGGTGGAGGTGATGTC	0.592000													31	42					0	0	0.000227799	0	0
PCDH17	27253	broad.mit.edu	37	13	58298998	58298998	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr13:58298998C>T	uc001vhq.1	+	4	3942	c.3050C>T	c.(3049-3051)CCT>CTT	p.P1017L	PCDH17_uc010aec.1_Missense_Mutation_p.P1016L|PCDH17_uc001vhr.1_Missense_Mutation_p.P106L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1017	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AACGTTAAACCTTATTTAAAA	0.478000													24	44					0	0	0.000375601	0	0
DACH1	1602	broad.mit.edu	37	13	72063214	72063214	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr13:72063214C>T	uc010thn.1	-	8	2060	c.1637G>A	c.(1636-1638)GGA>GAA	p.G546E	DACH1_uc010tho.1_Missense_Mutation_p.G398E|DACH1_uc010thp.1_Missense_Mutation_p.G344E	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	598					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		CAGTGGTTGTCCATGCCCAGT	0.448000													93	141					0	0	0.000147903	0	0
KDELC1	79070	broad.mit.edu	37	13	103449154	103449154	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr13:103449154C>T	uc001vpq.3	-	2	772	c.388G>A	c.(388-390)GGG>AGG	p.G130R	KDELC1_uc001vpr.3_5'UTR|BIVM_uc001vps.2_5'Flank|BIVM_uc010agc.2_5'Flank	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	130	Filamin.					endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TCCAAATTACCTTTTAAAATA	0.269000													14	21					0	0	0.000219431	0	0
DCAF11	80344	broad.mit.edu	37	14	24587609	24587609	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:24587609G>A	uc001wlv.2	+	7	870	c.590G>A	c.(589-591)CGA>CAA	p.R197Q	DCAF11_uc001wlw.2_Missense_Mutation_p.R197Q|DCAF11_uc001wlz.2_Missense_Mutation_p.R97Q|DCAF11_uc001wly.2_Missense_Mutation_p.R153Q|DCAF11_uc001wme.2_Missense_Mutation_p.R157Q|DCAF11_uc010tny.1_Missense_Mutation_p.R64Q|DCAF11_uc001wmd.2_Missense_Mutation_p.R197Q|DCAF11_uc001wmc.2_Missense_Mutation_p.R97Q|DCAF11_uc001wmb.3_Missense_Mutation_p.R171Q|DCAF11_uc001wma.3_Missense_Mutation_p.R197Q	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	197	WD 1.					CUL4 RING ubiquitin ligase complex	protein binding				0						CAGACAATCCGACTCTATGAC	0.493000													69	120					0	0	0.000147903	0	0
OTX2	5015	broad.mit.edu	37	14	57268611	57268611	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:57268611G>A	uc001xcp.2	-	3	883	c.712C>T	c.(712-714)CTT>TTT	p.L238F	OTX2_uc010aou.2_Missense_Mutation_p.L238F|OTX2_uc001xcq.2_Missense_Mutation_p.L246F	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	238					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					TGGGTGGAAAGAGAAGCTGGG	0.507000													31	55					0	0	0.000109025	0	0
KIAA1409	57578	broad.mit.edu	37	14	94158220	94158220	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:94158220G>A	uc001ybv.1	+	45	7133	c.7050G>A	c.(7048-7050)GCG>GCA	p.A2350A	KIAA1409_uc001ybs.1_Silent_p.A2328A	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2505						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCTTCACGGCGATACTGACAG	0.473000													53	69					0	0	0.000147903	0	0
ADAM6	8755	broad.mit.edu	37	14	106667749	106667749	+	RNA	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:106667749C>T	uc010tyt.1	-	877		c.22116G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGAGCTT	0.562000													38	52					0	0	0.000509022	0	0
ADAM6	8755	broad.mit.edu	37	14	106805141	106805141	+	RNA	SNP	C	G	G	rs114722259	by1000genomes	TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:106805141C>G	uc010tyt.1	-	361		c.14024G>C			uc001ysw.1_Intron					Parts of antibodies, mostly variable regions.												0						AGCACCTGCGCCCGCCCCCTC	0.687000													4	28					0	0	0.000274275	0	0
SPG21	51324	broad.mit.edu	37	15	65262497	65262498	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr15:65262497_65262498CG>AT	uc002aod.2	-	6	608_609	c.515_516CG>AT	c.(514-516)CCG>CAT	p.P172H	SPG21_uc002aoe.2_Missense_Mutation_p.P172H|SPG21_uc010bhb.2_Missense_Mutation_p.P145H|SPG21_uc010bhc.2_Missense_Mutation_p.P18H	NM_001127889	NP_001121361	Q9NZD8	SPG21_HUMAN	spastic paraplegia 21 isoform a	172					cell death	cytosol|endosome membrane|trans-Golgi network transport vesicle	CD4 receptor binding				0						TAGGGTCCACCGGGCCAGATGA	0.396000													8	411					0	0	6.4e-05	0	0
SEMA4B	10509	broad.mit.edu	37	15	90760690	90760690	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr15:90760690C>T	uc002boy.2	+	3	460	c.177C>T	c.(175-177)TTC>TTT	p.F59F	SEMA4B_uc002boz.2_Silent_p.F59F|SEMA4B_uc010uqd.1_5'UTR|SEMA4B_uc002bpa.2_5'Flank	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			AGCGGCCATTCCTCAGATTCG	0.567000													11	31					0	0	3.86212e-05	0	0
CHD2	1106	broad.mit.edu	37	15	93492257	93492257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr15:93492257C>T	uc002bsp.2	+	13	2028	c.1453C>T	c.(1453-1455)CGA>TGA	p.R485*	CHD2_uc002bsn.2_Nonsense_Mutation_p.R485*|CHD2_uc002bso.1_Nonsense_Mutation_p.R485*|CHD2_uc010urb.1_Nonsense_Mutation_p.R498*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	485					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TCTGGAACTTCGAGATTATCA	0.413000													120	79					0	0	0.000147903	0	0
OR4F6	390648	broad.mit.edu	37	15	102346244	102346245	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr15:102346244_102346245GG>TT	uc010utr.1	+	1	322_323	c.322_323GG>TT	c.(322-324)GGG>TTG	p.G108L		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CCATGCAGTTGGGGGAACTGAG	0.480000													15	513					0	0	6.4e-05	0	0
ACSM2A	123876	broad.mit.edu	37	16	20494476	20494476	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:20494476G>A	uc010bwe.2	+	14	1845	c.1606G>A	c.(1606-1608)GCC>ACC	p.A536T	ACSM2A_uc002dhf.3_Missense_Mutation_p.A536T|ACSM2A_uc002dhg.3_Missense_Mutation_p.A536T|ACSM2A_uc010vay.1_Missense_Mutation_p.A457T|ACSM2A_uc002dhh.3_Missense_Mutation_p.A166T	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	536					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						GTCAGTGACAGCCCCATACAA	0.488000													32	122					0	0	0.000270559	0	0
ZP2	7783	broad.mit.edu	37	16	21209114	21209114	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:21209114C>T	uc002dii.2	-	18	2068	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K	ZP2_uc010bwn.1_Missense_Mutation_p.E720K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	690	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		TCCCCTGTTTCACTCCTACTC	0.468000													58	174					0	0	0.000147903	0	0
IL21R	50615	broad.mit.edu	37	16	27455918	27455918	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:27455918T>C	uc002doq.1	+	6	796	c.563T>C	c.(562-564)CTG>CCG	p.L188P	IL21R_uc002dor.1_Missense_Mutation_p.L188P|IL21R_uc002dos.1_Missense_Mutation_p.L188P	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	188	Extracellular (Potential).|Fibronectin type-III.				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CTCCTCCCCCTGGAGTTCCGC	0.592000			T	BCL6	NHL								3	60					0	0	6.4e-05	0	0
ATP2A1	487	broad.mit.edu	37	16	28909731	28909731	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:28909731G>A	uc002dro.1	+	14	1907	c.1723G>A	c.(1723-1725)GAA>AAA	p.E575K	uc010vct.1_Intron|ATP2A1_uc002drn.1_Missense_Mutation_p.E575K|ATP2A1_uc002drp.1_Missense_Mutation_p.E450K	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	575	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GAAGCGAGAGGAAATGGTCCT	0.637000													8	5					0	0	0.000157383	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76501288	76501288	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:76501288C>T	uc002feu.1	+	12	1908	c.1523C>T	c.(1522-1524)CCA>CTA	p.P508L	CNTNAP4_uc002fev.1_Missense_Mutation_p.P372L|CNTNAP4_uc010chb.1_Missense_Mutation_p.P435L|CNTNAP4_uc002fex.1_Missense_Mutation_p.P511L|CNTNAP4_uc002few.2_Missense_Mutation_p.P483L	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	508	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGTAAAAGTCCACTTGGTGGA	0.418000													48	14					0	0	0.000147903	0	0
KIAA0182	23199	broad.mit.edu	37	16	85697143	85697143	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:85697143A>G	uc002fix.2	+	11	2641	c.2567A>G	c.(2566-2568)AAC>AGC	p.N856S	KIAA0182_uc002fiw.2_Missense_Mutation_p.N752S|KIAA0182_uc002fiy.2_Missense_Mutation_p.N783S|KIAA0182_uc002fiz.2_Missense_Mutation_p.N36S|KIAA0182_uc010cho.2_Missense_Mutation_p.N36S	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	856							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						GAGATGAACAACAGTCCCAAC	0.557000													4	44					0	0	0.00024832	0	0
FANCA	2175	broad.mit.edu	37	16	89849495	89849495	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr16:89849495G>A	uc002fou.1	-	16	1528	c.1486C>T	c.(1486-1488)CCA>TCA	p.P496S	FANCA_uc010vpn.1_Missense_Mutation_p.P496S	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	496					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		ACCAGGGGTGGGTGGAGAATG	0.587000			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				19	10					0	0	0.000175454	0	0
ATP2A3	489	broad.mit.edu	37	17	3844872	3844872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr17:3844872G>A	uc002fxb.1	-	13	1773	c.1622C>T	c.(1621-1623)TCC>TTC	p.S541F	ATP2A3_uc002fwx.1_Missense_Mutation_p.S541F|ATP2A3_uc002fwy.1_Missense_Mutation_p.S541F|ATP2A3_uc002fwz.1_Missense_Mutation_p.S541F|ATP2A3_uc002fxa.1_Missense_Mutation_p.S541F|ATP2A3_uc002fxc.1_Missense_Mutation_p.S541F|ATP2A3_uc002fxd.1_Missense_Mutation_p.S541F	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	541	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		CTGCTCCCTGGAGGTGGGGGT	0.682000													25	19					0	0	0.00047179	0	0
TADA2A	6871	broad.mit.edu	37	17	35831217	35831217	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr17:35831217T>C	uc002hnt.2	+	14	1205	c.1048T>C	c.(1048-1050)TCC>CCC	p.S350P	TADA2A_uc002hnv.2_Missense_Mutation_p.S350P|TADA2A_uc002hnw.2_Missense_Mutation_p.S249P|TADA2A_uc010cvb.2_Missense_Mutation_p.S146P	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	350					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						CCTGAGTCCTTCCATTCCAAT	0.433000													3	59					0	0	6.4e-05	0	0
MAP3K3	4215	broad.mit.edu	37	17	61744314	61744314	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr17:61744314C>T	uc002jbg.2	+	6	715	c.396C>T	c.(394-396)CCC>CCT	p.P132P	MAP3K3_uc002jbe.2_Silent_p.P163P|MAP3K3_uc002jbf.2_Silent_p.P163P|MAP3K3_uc002jbh.2_Silent_p.P163P|MAP3K3_uc010wpo.1_Silent_p.P47P|MAP3K3_uc010wpp.1_Silent_p.P132P	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	132					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						GTTCCTCTCCCCACTCTGGGG	0.527000													22	50					0	0	0.000375601	0	0
ENPP7	339221	broad.mit.edu	37	17	77708929	77708929	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr17:77708929G>C	uc002jxa.2	+	3	507	c.487G>C	c.(487-489)GCA>CCA	p.A163P		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	163					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			AGAAGGCATCGCACACAACTA	0.587000													18	32					0	0	0.000132079	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14779986	14779986	+	Missense_Mutation	SNP	G	A	A	rs76927023	byFrequency	TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr18:14779986G>A	uc010dlo.2	+	11	1628	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	483										ovary(1)|skin(1)	2						GAATCCAAACGAGAGGAAGAT	0.284000													6	17					0	0	0.000442599	0	0
TICAM1	148022	broad.mit.edu	37	19	4817244	4817244	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:4817244G>A	uc002mbi.2	-	2	1397	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	382					apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GGGAGGAAGGGAACAGGGAGG	0.493000													15	38					0	0	0.000566183	0	0
CACNA1A	773	broad.mit.edu	37	19	13365981	13365981	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:13365981G>A	uc010dze.2	-	29	4922	c.4686C>T	c.(4684-4686)TTC>TTT	p.F1562F	CACNA1A_uc010xnd.1_Silent_p.F267F|CACNA1A_uc002mwx.3_Silent_p.F267F|CACNA1A_uc010dzc.2_Silent_p.F1087F|CACNA1A_uc002mwy.3_Silent_p.F1561F|CACNA1A_uc010xne.1_Silent_p.F1090F|CACNA1A_uc002mwv.3_Silent_p.F78F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1562	IV.|Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GAGACACCACGAACTGCCACA	0.552000													9	18					0	0	3.86212e-05	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794354	15794354	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:15794354G>A	uc002nbl.2	+	7	760	c.699G>A	c.(697-699)GAG>GAA	p.E233E		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCCTTGTAGAGAAAAGAAGCC	0.537000													27	36					0	0	0.000147802	0	0
LOC100101266	100101266	broad.mit.edu	37	19	24345745	24345745	+	RNA	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:24345745C>T	uc010edb.1	-	1		c.505G>A				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						CAGTCTTTGTCGTTGGAACAG	0.453000													101	123					0	0	0.000147903	0	0
LSR	51599	broad.mit.edu	37	19	35741440	35741440	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:35741440G>A	uc002nyl.2	+	2	699	c.476G>A	c.(475-477)GGC>GAC	p.G159D	LSR_uc002nym.2_Missense_Mutation_p.G159D|LSR_uc002nyn.2_Missense_Mutation_p.G159D|LSR_uc002nyo.2_Missense_Mutation_p.G159D|LSR_uc010xsr.1_Missense_Mutation_p.G159D|LSR_uc002nyp.2_Missense_Mutation_p.G122D	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	159	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGGAACCCAGGCTACAACCCC	0.637000													19	19					0	0	0.000132079	0	0
SPINT2	10653	broad.mit.edu	37	19	38782532	38782532	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:38782532C>T	uc002ohr.1	+	7	976	c.645C>T	c.(643-645)GCC>GCT	p.A215A	SPINT2_uc002ohs.1_Silent_p.A158A	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	215	Helical; (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TCCTGGGAGCCTCCATGGTCT	0.632000													5	11					0	0	0.000602214	0	0
NLRP7	199713	broad.mit.edu	37	19	55450410	55450410	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:55450410C>T	uc002qih.3	-	4	1853	c.1777G>A	c.(1777-1779)GAA>AAA	p.E593K	NLRP7_uc002qig.3_Missense_Mutation_p.E593K|NLRP7_uc002qii.3_Missense_Mutation_p.E593K|NLRP7_uc010esk.2_Missense_Mutation_p.E593K|NLRP7_uc010esl.2_Missense_Mutation_p.E621K	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	593							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ATAGAAATTTCCTTGAACGGG	0.493000													20	34					0	0	0.000132079	0	0
PEG3	5178	broad.mit.edu	37	19	57325403	57325403	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr19:57325403C>T	uc002qnu.2	-	7	4758	c.4407G>A	c.(4405-4407)GAG>GAA	p.E1469E	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.E1440E|PEG3_uc002qnv.2_Silent_p.E1469E|PEG3_uc002qnw.2_Silent_p.E1345E|PEG3_uc002qnx.2_Silent_p.E1343E|PEG3_uc010etr.2_Silent_p.E1469E	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1469	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CAGCTTTTCCCTCTGGCTCTT	0.527000													28	57					0	0	0.000227799	0	0
MYT1L	23040	broad.mit.edu	37	2	1906931	1906931	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:1906931G>A	uc002qxe.2	-	14	2780	c.1953C>T	c.(1951-1953)TAC>TAT	p.Y651Y	MYT1L_uc002qxd.2_Silent_p.Y649Y|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	651					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TATGGTTGTCGTAACTGTTGT	0.478000													7	71					0	0	8.12818e-05	0	0
HS1BP3	64342	broad.mit.edu	37	2	20840906	20840906	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:20840906T>C	uc002rdw.1	-	3	274	c.233A>G	c.(232-234)TAC>TGC	p.Y78C	HS1BP3_uc002rdx.2_Missense_Mutation_p.Y78C|HS1BP3_uc002rdy.2_Missense_Mutation_p.Y78C	NM_022460	NP_071905	Q53T59	H1BP3_HUMAN	HCLS1 binding protein 3	78	PX.				cell communication		phosphatidylinositol binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGTTTCTGGTAAAACTCCTC	0.552000													37	36					0	0	0.000509022	0	0
APOB	338	broad.mit.edu	37	2	21232376	21232376	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:21232376T>C	uc002red.2	-	26	7492	c.7364A>G	c.(7363-7365)CAG>CGG	p.Q2455R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2455					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCCAGAGCCTGAATTTCACC	0.393000													6	617					0	0	8.12818e-05	0	0
ETAA1	54465	broad.mit.edu	37	2	67630986	67630986	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:67630986C>T	uc002sdz.1	+	5	1311	c.1172C>T	c.(1171-1173)CCT>CTT	p.P391L		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	391						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						GGTAGTGAACCTTTTGCTATG	0.348000													5	100					0	0	0.000602214	0	0
LONRF2	164832	broad.mit.edu	37	2	100903486	100903486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:100903486C>T	uc002tal.3	-	11	2600	c.1960G>A	c.(1960-1962)GAT>AAT	p.D654N	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	654	Lon.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						TGCACAGAATCGTGGAGAGCG	0.478000													12	2					0	0	6.40141e-05	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													3	58					0	0	6.4e-05	0	0
COL3A1	1281	broad.mit.edu	37	2	189849645	189849645	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:189849645C>T	uc002uqj.1	+	2	356	c.239C>T	c.(238-240)CCA>CTA	p.P80L		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	80	VWFC.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCAGAAATTCCATTTGGAGAA	0.413000													23	18					0	0	0.000586117	0	0
FN1	2335	broad.mit.edu	37	2	216272045	216272045	+	Splice_Site	SNP	C	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:216272045C>G	uc002vfa.2	-	18	2785	c.2519_splice	c.e18-1	p.G840_splice	FN1_uc002vfb.2_Splice_Site_p.G840_splice|FN1_uc002vfc.2_Splice_Site_p.G840_splice|FN1_uc002vfd.2_Splice_Site_p.G840_splice|FN1_uc002vfe.2_Splice_Site_p.G840_splice|FN1_uc002vff.2_Splice_Site_p.G840_splice|FN1_uc002vfg.2_Splice_Site_p.G840_splice|FN1_uc002vfh.2_Splice_Site_p.G840_splice|FN1_uc002vfi.2_Splice_Site_p.G840_splice|FN1_uc002vfj.2_Splice_Site_p.G840_splice	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein						acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATTCTGTACCCTGCAGATTCA	0.443000													3	73					0	0	0.00024832	0	0
SP140	11262	broad.mit.edu	37	2	231157400	231157400	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:231157400G>T	uc002vql.2	+	20	1980	c.1865G>T	c.(1864-1866)TGG>TTG	p.W622L	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.W508L|SP140_uc002vqm.2_Missense_Mutation_p.W562L|SP140_uc010fxl.2_Missense_Mutation_p.W595L	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	622	SAND.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GATGGAAAATGGTTCACCCCC	0.517000													48	23					3.70713e-34	5.77776e-33	0.000147903	1	0
UGT1A8	54576	broad.mit.edu	37	2	234526865	234526865	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr2:234526865G>A	uc002vup.2	+	1	575	c.512G>A	c.(511-513)GGA>GAA	p.G171E	UGT1A8_uc010zmv.1_Missense_Mutation_p.G171E	NM_019076	NP_061949	Q9HAW9	UD18_HUMAN	UDP glycosyltransferase 1 family, polypeptide A8	171					drug metabolic process|fatty acid metabolic process|flavone metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme inhibitor activity|fatty acid binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|steroid binding			ovary(2)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0334)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;2.56e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000482)|Lung(119;0.00404)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTCGCCAGGGGAATAGCTTGC	0.473000													76	58					0	0	0.000147903	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870105	51870105	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr20:51870105C>T	uc002xwo.2	+	2	1064	c.108C>T	c.(106-108)AGC>AGT	p.S36S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	36	Potential.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			aggaggaCAGCGGTTCAGTAG	0.398000													13	4					0	0	0.000151284	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671550	39671550	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr21:39671550G>C	uc002ywv.2	+	4	669	c.367G>C	c.(367-369)GAA>CAA	p.E123Q	KCNJ15_uc002yww.2_Missense_Mutation_p.E123Q|KCNJ15_uc002ywx.2_Missense_Mutation_p.E123Q	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	123					synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						CTTTTCCCTGGAATCCCAGAC	0.493000													5	104					0	0	0.000602214	0	0
DSCAM	1826	broad.mit.edu	37	21	41385240	41385240	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr21:41385240C>T	uc002yyq.1	-	33	6212	c.5760G>A	c.(5758-5760)AGG>AGA	p.R1920R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1920	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGCTCAGGTCCCTGCTGGTGC	0.547000													22	44					0	0	9.22233e-05	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178617	17178617	+	RNA	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:17178617G>A	uc002zls.1	+	3		c.699G>A								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						TCTTGCTGATGATTTGGAACA	0.622000													37	20					0	0	0.000437636	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617000													5	20					0	0	8.12818e-05	0	0
MYO18B	84700	broad.mit.edu	37	22	26294364	26294364	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:26294364G>A	uc003abz.1	+	29	5009	c.4759G>A	c.(4759-4761)GAT>AAT	p.D1587N	MYO18B_uc003aca.1_Missense_Mutation_p.D1468N|MYO18B_uc010guy.1_Missense_Mutation_p.D1469N|MYO18B_uc010guz.1_Missense_Mutation_p.D1467N|MYO18B_uc011aka.1_Missense_Mutation_p.D741N|MYO18B_uc011akb.1_Missense_Mutation_p.D1100N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1587	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGACCTTGAGGATACCTGCGT	0.512000													29	100					0	0	0.000184323	0	0
OSBP2	23762	broad.mit.edu	37	22	31289464	31289464	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:31289464G>A	uc003aiy.1	+	10	2109	c.2005G>A	c.(2005-2007)GAA>AAA	p.E669K	OSBP2_uc011ala.1_Missense_Mutation_p.E503K|OSBP2_uc010gwc.1_Missense_Mutation_p.E496K|OSBP2_uc011alb.1_Missense_Mutation_p.E620K|OSBP2_uc003aiz.1_Missense_Mutation_p.E668K|OSBP2_uc003aja.1_Missense_Mutation_p.E302K|OSBP2_uc011alc.1_Missense_Mutation_p.E411K|OSBP2_uc003ajb.2_Missense_Mutation_p.E214K|OSBP2_uc011ald.1_Missense_Mutation_p.E213K|OSBP2_uc010gwd.1_Missense_Mutation_p.E214K	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	669					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CATCCACTTAGAATTCCAGGC	0.587000													24	49					0	0	0.000117367	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083353	44083353	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:44083353A>T	uc003bdy.1	-	11	1355	c.1140T>A	c.(1138-1140)AAT>AAA	p.N380K	EFCAB6_uc003bdz.1_Missense_Mutation_p.N228K|EFCAB6_uc010gzi.1_Missense_Mutation_p.N228K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.N377K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	380					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTACATACCTATTTCTTTTTG	0.299000													26	133					0	0	0.000491102	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083357	44083357	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr22:44083357C>T	uc003bdy.1	-	11	1351	c.1136G>A	c.(1135-1137)AGA>AAA	p.R379K	EFCAB6_uc003bdz.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzi.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.R376K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATACCTATTTCTTTTTGTCAG	0.308000													34	135					0	0	0.000589545	0	0
IL5RA	3568	broad.mit.edu	37	3	3139902	3139902	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:3139902C>T	uc011ask.1	-	7	1084	c.440G>A	c.(439-441)AGG>AAG	p.R147K	IL5RA_uc010hbq.2_Missense_Mutation_p.R147K|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.R147K|IL5RA_uc011asl.1_Missense_Mutation_p.R147K|IL5RA_uc011asm.1_Missense_Mutation_p.R147K|IL5RA_uc010hbt.2_Missense_Mutation_p.R147K|IL5RA_uc011asn.1_Missense_Mutation_p.R147K|IL5RA_uc010hbu.2_Missense_Mutation_p.R147K	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	147	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		TTGGTATGACCTTAAACGTGA	0.413000													21	41					0	0	0.000295444	0	0
SCN5A	6331	broad.mit.edu	37	3	38628959	38628959	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:38628959T>G	uc003cio.2	-	15	2562	c.2368A>C	c.(2368-2370)ATC>CTC	p.I790L	SCN5A_uc003cin.2_Missense_Mutation_p.I790L|SCN5A_uc003cil.3_Missense_Mutation_p.I790L|SCN5A_uc010hhi.2_Missense_Mutation_p.I790L|SCN5A_uc010hhk.2_Missense_Mutation_p.I790L|SCN5A_uc011ayr.1_Missense_Mutation_p.I790L|SCN5A_uc010hhj.1_Missense_Mutation_p.I401L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	790	Helical; Name=S3 of repeat II; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGGCTAAGGATGACGATGATG	0.567000													9	16					0	0	0.000274275	0	0
IQCF3	401067	broad.mit.edu	37	3	51864457	51864457	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:51864457G>A	uc010hlx.1	+	5	446	c.105G>A	c.(103-105)AAG>AAA	p.K35K	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	35										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AAAGGGTGAAGGCAGCTGGGC	0.572000													12	37					0	0	0.000151284	0	0
EPHA6	285220	broad.mit.edu	37	3	96706248	96706248	+	Silent	SNP	A	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:96706248A>G	uc010how.1	+	3	568	c.525A>G	c.(523-525)CCA>CCG	p.P175P	EPHA6_uc003drp.1_Silent_p.P175P	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	80	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TAATGGAACCAAACCAAAACA	0.393000													52	67					0	0	0.000147903	0	0
CASR	846	broad.mit.edu	37	3	121973101	121973101	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:121973101C>T	uc003eev.3	+	2	437	c.65C>T	c.(64-66)CCA>CTA	p.P22L	CASR_uc003eew.3_Missense_Mutation_p.P22L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	22	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCCTACGGGCCAGACCAGCGA	0.537000													46	64					0	0	0.000147903	0	0
FAM194A	131831	broad.mit.edu	37	3	150396229	150396229	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:150396229G>A	uc003eyg.2	-	10	1281	c.1224C>T	c.(1222-1224)ATC>ATT	p.I408I	FAM194A_uc003eyh.2_Silent_p.I262I	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	408										skin(2)|ovary(1)	3						CACAACAAATGATAGACATGT	0.264000													37	54					0	0	0.000437636	0	0
DNAJB11	51726	broad.mit.edu	37	3	186303137	186303137	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:186303137C>T	uc003fqi.2	+	10	1237	c.1017C>T	c.(1015-1017)ATC>ATT	p.I339I		NM_016306	NP_057390	Q9UBS4	DJB11_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 11	339					protein folding	endoplasmic reticulum lumen	heat shock protein binding			ovary(1)|lung(1)	2	all_cancers(143;2.84e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.44e-20)	GBM - Glioblastoma multiforme(93;0.0476)		CTTCAGGTATCAAACAGCTAC	0.328000													17	34					0	0	7.07596e-05	0	0
MIR573	693158	broad.mit.edu	37	4	24521913	24521913	+	RNA	SNP	A	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:24521913A>T	hsa-mir-573|MI0003580	-			c.1A>T																				0						AAACCGCTAAAGCAGCCGACA	0.393000													47	92					0	0	0.000147903	0	0
PHOX2B	8929	broad.mit.edu	37	4	41750451	41750451	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:41750451G>A	uc003gwf.3	-	1	537	c.177C>T	c.(175-177)TCC>TCT	p.S59S		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	59					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						CCGGCGTGAGGGAAGGGCAGC	0.622000			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	26					0	0	0.000308642	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361499	70361499	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:70361499C>T	uc003hek.3	-	1	128	c.81G>A	c.(79-81)CTG>CTA	p.L27L	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Silent_p.L27L	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	27					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TGGGCCACACCAGCACCTTTC	0.458000													42	84					0	0	0.000147903	0	0
AFP	174	broad.mit.edu	37	4	74310728	74310728	+	Silent	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:74310728T>C	uc003hgz.1	+	7	779	c.732T>C	c.(730-732)AGT>AGC	p.S244S	AFP_uc003hha.1_Silent_p.S244S|AFP_uc011cbg.1_Silent_p.S18S	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	244	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CTAAACTGAGTCAGAAGTTTA	0.333000									Alpha-Fetoprotein_Hereditary_Persistence_of				16	32					0	0	0.000308642	0	0
MMRN1	22915	broad.mit.edu	37	4	90872795	90872795	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:90872795G>A	uc003hst.2	+	7	3229	c.3158G>A	c.(3157-3159)GGG>GAG	p.G1053E	MMRN1_uc010iku.2_Missense_Mutation_p.G356E|MMRN1_uc011cds.1_Missense_Mutation_p.G795E	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1053	EGF-like.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TGCCAAAATGGGGGCACGTGC	0.423000													19	34					0	0	9.7654e-05	0	0
FSTL5	56884	broad.mit.edu	37	4	162459387	162459387	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:162459387C>T	uc003iqh.2	-	10	1679	c.1243G>A	c.(1243-1245)GCA>ACA	p.A415T	FSTL5_uc003iqi.2_Missense_Mutation_p.A414T|FSTL5_uc010iqv.2_Missense_Mutation_p.A414T	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	415	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TCATTCTTTGCGATACAAGTG	0.423000													55	93					0	0	0.000147903	0	0
ADAM29	11086	broad.mit.edu	37	4	175897512	175897512	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr4:175897512C>T	uc003iuc.2	+	5	1506	c.836C>T	c.(835-837)CCC>CTC	p.P279L	ADAM29_uc003iud.2_Missense_Mutation_p.P279L|ADAM29_uc010irr.2_Missense_Mutation_p.P279L|ADAM29_uc011cki.1_Missense_Mutation_p.P279L	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	279	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		AACATTACGCCCCGGATGCAA	0.433000													40	65					0	0	0.000228196	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5191880	5191880	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:5191880C>T	uc003jdl.2	+	8	1428	c.1290C>T	c.(1288-1290)ACC>ACT	p.T430T	ADAMTS16_uc003jdk.1_Silent_p.T430T|ADAMTS16_uc003jdj.1_Silent_p.T430T	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	430	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TGGCCTTCACCATTGCCCATG	0.443000													62	83					0	0	0.000147903	0	0
DNAH5	1767	broad.mit.edu	37	5	13823435	13823435	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:13823435G>A	uc003jfd.2	-	40	6666	c.6624C>T	c.(6622-6624)CTC>CTT	p.L2208L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2208					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TATTTGGAAAGAGATCTTCAA	0.383000									Kartagener_syndrome				56	89					0	0	0.000147903	0	0
UGT3A1	133688	broad.mit.edu	37	5	35991310	35991310	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:35991310G>A	uc003jjv.1	-	1	190	c.33C>T	c.(31-33)GCC>GCT	p.A11A	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.A11A|UGT3A1_uc011cor.1_Silent_p.A11A|UGT3A1_uc003jjy.1_Intron	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	11						integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAGAAGGAAGGCCACTAGAA	0.602000													20	42					0	0	0.000175454	0	0
C9	735	broad.mit.edu	37	5	39285309	39285309	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:39285309C>T	uc003jlv.3	-	11	1761	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	558					complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CTCTATTTTTCATTGGGGAAC	0.408000													35	47					0	0	0.000374591	0	0
GCNT4	51301	broad.mit.edu	37	5	74324725	74324725	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:74324725G>C	uc003kdn.2	-	1	2000	c.1138C>G	c.(1138-1140)CCC>GCC	p.P380A		NM_016591	NP_057675	Q9P109	GCNT4_HUMAN	core 2 beta-1,6-N-acetylglucosaminyltransferase	380	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity	p.P380P(1)		ovary(2)|skin(1)	3		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;8.44e-57)		GTACAACTGGGATAGAAAAAG	0.428000													31	29					0	0	0.000227799	0	0
TMEM161B	153396	broad.mit.edu	37	5	87498782	87498782	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:87498782G>C	uc003kjc.2	-	9	1036	c.911C>G	c.(910-912)CCT>CGT	p.P304R	TMEM161B_uc011cty.1_Missense_Mutation_p.P293R|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Missense_Mutation_p.P171R|TMEM161B_uc011ctx.1_Missense_Mutation_p.P122R	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	304						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		TACTTACAAAGGGATACTTTC	0.368000													44	76					0	0	0.000147903	0	0
LIX1	167410	broad.mit.edu	37	5	96432554	96432554	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:96432554C>T	uc003kmy.3	-	5	761	c.521G>A	c.(520-522)GGA>GAA	p.G174E		NM_153234	NP_694966	Q8N485	LIX1_HUMAN	limb expression 1	174										ovary(1)	1		all_cancers(142;4.28e-07)|all_epithelial(76;1.06e-09)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0318)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.0733)		TTTTAGGCTTCCATTCCAGTG	0.428000													22	36					0	0	0.000295444	0	0
SH3RF2	153769	broad.mit.edu	37	5	145379788	145379788	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:145379788C>T	uc003lnt.2	+	3	784	c.546C>T	c.(544-546)ATC>ATT	p.I182I	SH3RF2_uc011dbl.1_Silent_p.I182I	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	182	SH3 1.						ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGAAGTCATCAAGCAGCTGC	0.567000													12	27					0	0	0.000151284	0	0
GABRP	2568	broad.mit.edu	37	5	170222403	170222403	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:170222403C>T	uc003mau.2	+	5	630	c.432C>T	c.(430-432)TCC>TCT	p.S144S	GABRP_uc011dev.1_Silent_p.S144S	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	144	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GCCTCTTCTCCAATGGCACGG	0.552000													24	31					0	0	0.000117367	0	0
PPP1R10	5514	broad.mit.edu	37	6	30573785	30573785	+	Silent	SNP	A	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:30573785A>G	uc003nqn.1	-	10	1320	c.768T>C	c.(766-768)ACT>ACC	p.T256T	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	256	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						CTGCAGGGGGAGTGGCATCTC	0.527000													5	409					0	0	0.000274275	0	0
ZBTB22	9278	broad.mit.edu	37	6	33284312	33284312	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:33284312G>A	uc003oeb.2	-	2	534	c.382C>T	c.(382-384)CTT>TTT	p.L128F	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.L128F	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCCACTGTAAGGAAGTTGACA	0.577000													57	121					0	0	0.000147903	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34825920	34825920	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:34825920A>G	uc003oju.3	+	14	2021	c.1787A>G	c.(1786-1788)AAG>AGG	p.K596R	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	596										ovary(3)	3						CCACTGGAAAAGAGAGAGCGG	0.453000													3	107					0	0	6.4e-05	0	0
IL17A	3605	broad.mit.edu	37	6	52052467	52052467	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:52052467G>A	uc003pak.1	+	2	139	c.94G>A	c.(94-96)GGA>AGA	p.G32R		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	32					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					ACGAAATCCAGGATGCCCAAA	0.493000													114	199					0	0	0.000147903	0	0
PRDM1	639	broad.mit.edu	37	6	106554799	106554799	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:106554799G>A	uc003prd.2	+	7	2150	c.1916G>A	c.(1915-1917)AGA>AAA	p.R639K	PRDM1_uc003pre.2_Missense_Mutation_p.R505K	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	639	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		TGCCACAAGAGATTTAGCAGC	0.542000			D|N|Mis|F|S		DLBCL								24	40					0	0	0.000147802	0	0
ROS1	6098	broad.mit.edu	37	6	117714445	117714445	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:117714445C>T	uc003pxp.1	-	11	1403	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	402	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GGAGTAATTTCCTCGATGTTT	0.363000			T	GOPC|ROS1	glioblastoma|NSCLC								154	305					0	0	0.000147903	0	0
SYNE1	23345	broad.mit.edu	37	6	152746629	152746629	+	Silent	SNP	T	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:152746629T>C	uc010kiw.2	-	39	5756	c.5154A>G	c.(5152-5154)CAA>CAG	p.Q1718Q	SYNE1_uc003qot.3_Silent_p.Q1725Q|SYNE1_uc003qou.3_Silent_p.Q1718Q|SYNE1_uc010kjb.1_Silent_p.Q1701Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1718	Spectrin 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATTCCTTCAATTGCAAAAGTT	0.388000										HNSCC(10;0.0054)			30	79					0	0	0.000227799	0	0
STK31	56164	broad.mit.edu	37	7	23809348	23809348	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:23809348C>T	uc003sws.3	+	13	1753	c.1686C>T	c.(1684-1686)GTC>GTT	p.V562V	STK31_uc003swt.3_Silent_p.V539V|STK31_uc011jze.1_Silent_p.V562V|STK31_uc010kuq.2_Silent_p.V539V	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	562							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AGTCAAGTGTCTGCAAAGAGC	0.383000													58	105					0	0	0.000147903	0	0
GLI3	2737	broad.mit.edu	37	7	42007392	42007392	+	Missense_Mutation	SNP	C	G	G	rs142249104		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:42007392C>G	uc011kbh.1	-	14	2324	c.2233G>C	c.(2233-2235)GAT>CAT	p.D745H	GLI3_uc011kbg.1_Missense_Mutation_p.D686H	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	745					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GGGGTTTCATCGATGGCACTG	0.537000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				4	152					0	0	0.00024832	0	0
EGFR	1956	broad.mit.edu	37	7	55268925	55268925	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:55268925C>T	uc003tqk.2	+	25	3237	c.2991C>T	c.(2989-2991)TTC>TTT	p.F997F	EGFR_uc010kzg.1_Silent_p.F952F|EGFR_uc011kco.1_Silent_p.F944F	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	997	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	ACTCCAACTTCTACCGTGCCC	0.527000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			45	66					0	0	0.000509022	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339511	72339511	+	RNA	SNP	A	C	C			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:72339511A>C	uc010lal.1	-	1		c.145T>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCACCACTCCATCTTCCTTTT	0.582000													4	26					0	0	0.00024832	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	46					0	0	0.000491102	0	0
OR2F1	26211	broad.mit.edu	37	7	143657992	143657992	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr7:143657992G>A	uc003wds.1	+	1	973	c.929G>A	c.(928-930)GGG>GAG	p.G310E		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AAATTCTCTGGGTTAACATCA	0.428000													19	32					0	0	0.000175454	0	0
CNGB3	54714	broad.mit.edu	37	8	87641291	87641291	+	Nonsense_Mutation	SNP	C	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr8:87641291C>A	uc003ydx.2	-	12	1382	c.1336G>T	c.(1336-1338)GGA>TGA	p.G446*	CNGB3_uc010maj.2_Nonsense_Mutation_p.G308*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	446	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GTAGCTGCTCCAATCACATCT	0.418000													10	263					0.000442599	0.00667846	0.000442599	1	0
TG	7038	broad.mit.edu	37	8	133961052	133961052	+	Silent	SNP	C	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr8:133961052C>A	uc003ytw.2	+	27	5306	c.5265C>A	c.(5263-5265)CCC>CCA	p.P1755P	TG_uc010mdw.2_Silent_p.P514P|TG_uc011ljb.1_Silent_p.P124P	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1755	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity	p.P1755R(1)		ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGAGCTCACCCAGTGTCCTGC	0.527000													8	192					0.000442599	0.00667846	0.000442599	1	0
PTK2	5747	broad.mit.edu	37	8	141727723	141727723	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr8:141727723C>T	uc003yvu.2	-	23	2346	c.2116G>A	c.(2116-2118)GGA>AGA	p.G706R	PTK2_uc011ljp.1_Missense_Mutation_p.G14R|PTK2_uc003yvo.2_Missense_Mutation_p.G334R|PTK2_uc011ljq.1_Missense_Mutation_p.G401R|PTK2_uc003yvp.2_Missense_Mutation_p.G374R|PTK2_uc003yvq.2_Missense_Mutation_p.G232R|PTK2_uc003yvr.2_Missense_Mutation_p.G646R|PTK2_uc003yvs.2_Missense_Mutation_p.G706R|PTK2_uc003yvt.2_Missense_Mutation_p.G728R|PTK2_uc003yvv.2_Missense_Mutation_p.G606R|PTK2_uc011ljr.1_Missense_Mutation_p.G706R	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	706					axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TCAGACCCTCCGGAGTCCCAG	0.517000													5	122					0	0	8.12818e-05	0	0
PTPRD	5789	broad.mit.edu	37	9	8460523	8460523	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:8460523G>A	uc003zkk.2	-	32	4474	c.3763C>T	c.(3763-3765)CTG>TTG	p.L1255L	PTPRD_uc003zkp.2_Silent_p.L844L|PTPRD_uc003zkq.2_Silent_p.L844L|PTPRD_uc003zkr.2_Silent_p.L839L|PTPRD_uc003zks.2_Silent_p.L834L|PTPRD_uc003zkl.2_Silent_p.L1246L|PTPRD_uc003zkm.2_Silent_p.L1242L|PTPRD_uc003zkn.2_Silent_p.L844L|PTPRD_uc003zko.2_Silent_p.L841L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1255	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGCGGATCCAGATCCATTGAC	0.438000										TSP Lung(15;0.13)			25	22					0	0	0.000117367	0	0
SH3GL2	6456	broad.mit.edu	37	9	17795553	17795553	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:17795553G>A	uc003zna.2	+	9	1159	c.871G>A	c.(871-873)GAT>AAT	p.D291N	SH3GL2_uc011lmy.1_Missense_Mutation_p.D244N	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	291	SH3.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		TGTCCAAATGGATCAGCCCTG	0.473000													15	11					0	0	9.7654e-05	0	0
DNAJB5	25822	broad.mit.edu	37	9	34996725	34996725	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:34996725C>T	uc003zvt.2	+	3	813	c.675C>T	c.(673-675)ATC>ATT	p.I225I	DNAJB5_uc003zvs.2_Silent_p.I259I|DNAJB5_uc011los.1_Silent_p.I297I	NM_012266	NP_036398	O75953	DNJB5_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 5	225					protein folding|response to unfolded protein		heat shock protein binding|unfolded protein binding				0			LUSC - Lung squamous cell carcinoma(32;0.00575)			GCACCAAGATCACCTTCCCCA	0.567000													11	9					0	0	0.00010058	0	0
LOC442421	442421	broad.mit.edu	37	9	66499795	66499795	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:66499795G>A	uc004aee.1	+	1	605	c.605G>A	c.(604-606)CGC>CAC	p.R202H	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						TGCAAGTCGCGCAAGGAGCAG	0.592000													7	24					0	0	0.000422831	0	0
DBC1	1620	broad.mit.edu	37	9	121971195	121971195	+	Missense_Mutation	SNP	C	T	T	rs139886257		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:121971195C>T	uc004bkc.2	-	7	1403	c.947G>A	c.(946-948)CGC>CAC	p.R316H		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	316					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGAGGCGCTTCATAAA	0.512000													18	14					0	0	0.000295444	0	0
CACNA1B	774	broad.mit.edu	37	9	140952241	140952241	+	Silent	SNP	G	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr9:140952241G>A	uc004cog.2	+	27	4171	c.4026G>A	c.(4024-4026)AAG>AAA	p.K1342K	CACNA1B_uc011mfd.1_Silent_p.K872K|CACNA1B_uc004coi.2_Silent_p.K556K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1342	III.|Extracellular (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GGCAGTGGAAGAAATACGACT	0.512000													10	4					0	0	3.86212e-05	0	0
FAM47B	170062	broad.mit.edu	37	X	34961618	34961618	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chrX:34961618C>T	uc004ddi.1	+	1	688	c.670C>T	c.(670-672)CGC>TGC	p.R224C		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	224	Pro-rich.									ovary(3)|breast(1)	4						GTCCAGTCTCCGCCCAGAGCC	0.657000													18	5					0	0	0.000566183	0	0
FAM47C	442444	broad.mit.edu	37	X	37029045	37029045	+	Silent	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chrX:37029045C>T	uc004ddl.1	+	1	2576	c.2562C>T	c.(2560-2562)GAC>GAT	p.D854D		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	854										ovary(3)	3						AACTCCGTGACTTCAAGTGGG	0.443000													48	16					0	0	0.000147903	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160470	9160470	+	RNA	SNP	C	T	T			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chrY:9160470C>T	uc004frl.1	-	1		c.14G>A				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						GATGATCTGCCTCTACCATTG	0.333000													7	66					0	0	8.12818e-05	0	0
TMEM121	80757	broad.mit.edu	37	14	105996050	105996052	+	In_Frame_Del	DEL	GCC	-	-	rs10569304		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr14:105996050_105996052delGCC	uc001yrp.1	+	2	1030_1032	c.879_881delGCC	c.(877-882)GTGCCG>GTG	p.P299del	ADAM6_uc010tyt.1_Intron|uc001yrr.2_5'Flank	NM_025268	NP_079544	Q9BTD3	TM121_HUMAN	hole protein	299	Pro-rich.					integral to membrane					0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0188)	Epithelial(152;0.0959)|all cancers(159;0.235)		GCAACTCGGTgccgccgccgccg	0.660													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	102312241	102312241	+	RNA	DEL	A	-	-			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr15:102312241delA	uc010utk.1	+	1		c.34delA			uc010utl.1_5'Flank|uc010utm.1_5'Flank|uc002ccq.3_5'Flank|uc010utn.1_5'Flank|uc002ccs.1_5'Flank|uc010uto.1_5'Flank|uc002cct.1_5'Flank|uc002ccu.2_5'Flank|uc002ccv.1_5'Flank|uc002ccw.2_5'Flank					DQ593367																		AGTGGCCGGGAAATTTGCTGT	0.592													11	16	---	---	---	---					
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr3:12046124_12046126delAGC	uc003bwm.2	+	1	263_265	c.99_101delAGC	c.(97-102)CAACCG>CAG	p.P40del	SYN2_uc003bwl.1_In_Frame_Del_p.P40del	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	40					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCCCCAGCAAGCGCCGAcgccg	0.345													2	4	---	---	---	---					
AGGF1	55109	broad.mit.edu	37	5	76358966	76358967	+	Frame_Shift_Ins	INS	-	A	A			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr5:76358966_76358967insA	uc003ket.2	+	14	2394_2395	c.2034_2035insA	c.(2032-2037)AACAAAfs	p.N678fs		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	678_679					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AAAACAAGAACAAAAAAAACTG	0.465													7	385	---	---	---	---					
CASP8AP2	9994	broad.mit.edu	37	6	90577612	90577614	+	In_Frame_Del	DEL	GAA	-	-			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr6:90577612_90577614delGAA	uc003pnr.2	+	8	4799_4801	c.4603_4605delGAA	c.(4603-4605)GAAdel	p.E1535del	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_In_Frame_Del_p.E1535del|CASP8AP2_uc011dzz.1_In_Frame_Del_p.E1535del	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	1535					cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		CGTCATAATGGAAAAGTCCAATG	0.414													50	61	---	---	---	---					
MYBL1	4603	broad.mit.edu	37	8	67488453	67488453	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19C-06A-11D-A196-08	TCGA-ER-A19C-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	86c5f02f-f988-4ee3-bdb9-f3fe296412ae	a0848fec-a319-44c4-9028-4dbaf8b1646b	g.chr8:67488453delT	uc003xwj.2	-	10	1666	c.1259delA	c.(1258-1260)AACfs	p.N420fs	MYBL1_uc003xwl.2_Frame_Shift_Del_p.N420fs|MYBL1_uc003xwk.2_Frame_Shift_Del_p.N419fs	NM_001080416	NP_001073885	P10243	MYBA_HUMAN	v-myb myeloblastosis viral oncogene homolog	420	Negative regulatory domain (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)	3			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			ATTACAAGTGTTTTTTTTCCC	0.403													10	423	---	---	---	---					
