Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6194871	6194871	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:6194871G>A	uc001amb.1	-	19	3019	c.2919C>T	c.(2917-2919)TCC>TCT	p.S973S	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	973					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CGCCCCCCTTGGAGTTCAGTG	0.567000													38	68					0	0	0.000680045	0	0
TMEM201	199953	broad.mit.edu	37	1	9657000	9657001	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:9657000_9657001CC>TT	uc001apz.2	+	3	330_331	c.318_319CC>TT	c.(316-321)GACCCT>GATTCT	p.P107S	TMEM201_uc001apy.2_Missense_Mutation_p.P107S	NM_001130924	NP_001124396	Q5SNT2	TM201_HUMAN	transmembrane protein 201 isoform 1	107						integral to membrane|nuclear inner membrane					0	all_lung(157;0.222)	all_epithelial(116;2.09e-14)|Renal(390;0.000469)|all_lung(118;0.000521)|Lung NSC(185;0.000744)|Colorectal(325;0.0062)|Breast(348;0.0157)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.5e-08)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|STAD - Stomach adenocarcinoma(132;0.00345)|READ - Rectum adenocarcinoma(331;0.0419)		GCCTGCGCGACCCTTCGCAGCC	0.649000													9	25					0	0	6.4e-05	0	0
AGTRAP	57085	broad.mit.edu	37	1	11807497	11807497	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:11807497G>A	uc001asv.2	+	3	187	c.63G>A	c.(61-63)TGG>TGA	p.W21*	AGTRAP_uc001ast.2_Missense_Mutation_p.G54R|AGTRAP_uc001asu.2_Missense_Mutation_p.G54R|AGTRAP_uc001asw.2_Nonsense_Mutation_p.W21*|AGTRAP_uc001asx.2_Missense_Mutation_p.G10R	NM_020350	NP_065083	Q6RW13	ATRAP_HUMAN	angiotensin II receptor-associated protein	21	Extracellular (Potential).					cytoplasmic vesicle membrane|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein binding		AGTRAP/BRAF(2)	stomach(2)	2	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.46e-06)|COAD - Colon adenocarcinoma(227;0.000256)|BRCA - Breast invasive adenocarcinoma(304;0.0003)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCCTACAGGGGCTGCATTG	0.627000													30	66					0	0	0.000953801	0	0
CSMD2	114784	broad.mit.edu	37	1	34254227	34254227	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:34254227G>A	uc001bxn.1	-	12	1546	c.1517C>T	c.(1516-1518)TCC>TTC	p.S506F	CSMD2_uc001bxm.1_Missense_Mutation_p.S546F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	506	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAATCCCAGGGAACTGCCACT	0.443000													13	38					0	0	0.00185496	0	0
MAP7D1	55700	broad.mit.edu	37	1	36645654	36645654	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:36645654C>T	uc001bzz.2	+	16	2717	c.2501C>T	c.(2500-2502)TCC>TTC	p.S834F	MAP7D1_uc001caa.2_Missense_Mutation_p.S801F|MAP7D1_uc001cab.2_Missense_Mutation_p.S796F|MAP7D1_uc001cac.2_Missense_Mutation_p.S533F|MAP7D1_uc001cad.2_Missense_Mutation_p.S370F	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	834						cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				GTGGTGCAGTCCCCGCAGGTC	0.587000													4	9					0	0	0.000602214	0	0
KIAA0754	643314	broad.mit.edu	37	1	39877725	39877725	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:39877725A>C	uc009vvt.1	+	1	2550	c.1788A>C	c.(1786-1788)GAA>GAC	p.E596D	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	460											0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATTCACTGGAAAAGCTGGACC	0.468000													21	46					0	0	0.00188189	0	0
C1orf87	127795	broad.mit.edu	37	1	60538226	60538226	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:60538226G>A	uc001czs.1	-	2	182	c.90C>T	c.(88-90)CTC>CTT	p.L30L		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	30							calcium ion binding			ovary(1)|breast(1)	2						GCTTCTCCACGAGGTATTGAA	0.368000													16	34					0	0	0.000422831	0	0
COL11A1	1301	broad.mit.edu	37	1	103449711	103449711	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:103449711C>T	uc001dul.2	-	31	2857	c.2539G>A	c.(2539-2541)GGA>AGA	p.G847R	COL11A1_uc001duk.2_Silent_p.Q37Q|COL11A1_uc001dum.2_Missense_Mutation_p.G859R|COL11A1_uc001dun.2_Missense_Mutation_p.G808R|COL11A1_uc009weh.2_Missense_Mutation_p.G731R	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	847	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCTTGTCTTCCTGGATATCCT	0.234000													8	21					0	0	0.000673444	0	0
CHIA	27159	broad.mit.edu	37	1	111854906	111854906	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:111854906C>T	uc001eas.2	+	4	253	c.150C>T	c.(148-150)CTC>CTT	p.L50L	CHIA_uc001ear.2_Intron|CHIA_uc001eaq.2_Intron|CHIA_uc009wgc.2_Intron|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_Intron|CHIA_uc001eau.2_Intron|CHIA_uc009wgd.2_Intron	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	50					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		ACCCCTGCCTCTGTACCCACC	0.562000													12	38					0	0	0.000422831	0	0
KCND3	3752	broad.mit.edu	37	1	112319687	112319687	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:112319687A>G	uc001ebu.1	-	7	2207	c.1727T>C	c.(1726-1728)ATC>ACC	p.I576T	KCND3_uc001ebv.1_Missense_Mutation_p.I557T	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	576	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		CTGGATGTGGATCGTGCTGAG	0.547000													8	15					0	0	0.000274275	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454688	114454688	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:114454688C>T	uc001eeg.2	+	4	1645	c.1474C>T	c.(1474-1476)CTT>TTT	p.L492F	DCLRE1B_uc001eeh.2_Intron|DCLRE1B_uc001eei.2_Missense_Mutation_p.L366F	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	492					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGGCACCCCTCTTCTAGCTAC	0.522000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					30	65					0	0	0.000339439	0	0
LCE1B	353132	broad.mit.edu	37	1	152784962	152784962	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:152784962C>T	uc001faq.2	+	1	516	c.40C>T	c.(40-42)CCC>TCC	p.P14S		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	14	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAGCCccctcccaagtgcat	0.473000													29	32					0	0	0.000409698	0	0
DAP3	7818	broad.mit.edu	37	1	155691323	155691323	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:155691323C>T	uc001flq.2	+	4	353	c.184C>T	c.(184-186)CAG>TAG	p.Q62*	DAP3_uc001flr.2_Nonsense_Mutation_p.Q62*|DAP3_uc001fls.2_Nonsense_Mutation_p.Q62*|DAP3_uc010pgl.1_Nonsense_Mutation_p.Q21*|DAP3_uc001flt.2_Intron|DAP3_uc001flu.2_Nonsense_Mutation_p.Q62*|DAP3_uc010pgm.1_Intron	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	62					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GCATGGGGATCAGCACGAGGG	0.438000													8	72					0	0	0.000157383	0	0
CACNA1E	777	broad.mit.edu	37	1	181701872	181701873	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:181701872_181701873CT>TC	uc001gow.2	+	20	2815_2816	c.2650_2651CT>TC	c.(2650-2652)CTG>TCG	p.L884S	CACNA1E_uc009wxs.2_Missense_Mutation_p.L772S|CACNA1E_uc001gox.1_Missense_Mutation_p.L110S|CACNA1E_uc009wxt.2_Missense_Mutation_p.L110S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	884	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCCACCATGGCTGGCCAGGCCC	0.673000													22	32					0	0	6.4e-05	0	0
CHI3L1	1116	broad.mit.edu	37	1	203149641	203149641	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:203149641G>A	uc001gzi.2	-	8	1022	c.851C>T	c.(850-852)CCA>CTA	p.P284L	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Intron|CHI3L1_uc001gzj.2_Intron|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	284					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						GAACCGGCCTGGAATTCCCGG	0.592000													18	29					0	0	0.00121646	0	0
CHI3L1	1116	broad.mit.edu	37	1	203149767	203149767	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:203149767C>T	uc001gzi.2	-	8	896	c.725G>A	c.(724-726)GGG>GAG	p.G242E	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_Intron|CHI3L1_uc001gzj.2_Intron|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	242					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						CAACATGTACCCCACAGCATA	0.567000													4	14					0	0	0.00116845	0	0
MAPKAPK2	9261	broad.mit.edu	37	1	206902126	206902126	+	Silent	SNP	C	T	T	rs140239057		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:206902126C>T	uc001hem.1	+	2	637	c.351C>T	c.(349-351)ATC>ATT	p.I117I	MAPKAPK2_uc001hel.1_Silent_p.I117I	NM_032960	NP_116584	P49137	MAPK2_HUMAN	mitogen-activated protein kinase-activated	117	Protein kinase.				activation of MAPK activity|hormone biosynthetic process|innate immune response|leukotriene biosynthetic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|prostanoid metabolic process|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			GCCCGCACATCGTACGGATCG	0.592000													23	25					0	0	0.000586117	0	0
TAF1A	9015	broad.mit.edu	37	1	222750876	222750877	+	Missense_Mutation	DNP	CG	AT	AT	rs145721552	by1000genomes	TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr1:222750876_222750877CG>AT	uc009xdz.1	-	5	703_704	c.514_515CG>AT	c.(514-516)CGG>ATG	p.R172M	TAF1A_uc001hni.1_Missense_Mutation_p.R58M|TAF1A_uc001hnj.2_Missense_Mutation_p.R172M|TAF1A_uc001hnk.2_Missense_Mutation_p.R58M|TAF1A_uc010pur.1_Missense_Mutation_p.R172M	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	172					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		TAATATTTCCCGGGAAGACGTA	0.381000													13	834					0	0	6.4e-05	0	0
PPYR1	5540	broad.mit.edu	37	10	47087905	47087905	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr10:47087905C>T	uc001jee.2	+	3	1541	c.1122C>T	c.(1120-1122)CCC>CCT	p.P374P	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.P374P	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	374	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane		p.P374L(1)		ovary(1)|skin(1)	2						GGTCCAATCCCATTTAACCAG	0.587000													9	45					0	0	0.000442599	0	0
KIF20B	9585	broad.mit.edu	37	10	91528104	91528104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr10:91528104C>T	uc001kgs.1	+	30	5119	c.5047C>T	c.(5047-5049)CCT>TCT	p.P1683S	KIF20B_uc001kgr.1_Missense_Mutation_p.P1643S|KIF20B_uc001kgt.1_Missense_Mutation_p.P894S|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1683	Interaction with PIN1.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						TTTGAAATTTCCTATTTCAGA	0.299000													21	61					0	0	0.000375601	0	0
TLL2	7093	broad.mit.edu	37	10	98170121	98170121	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr10:98170121C>T	uc001kml.1	-	9	1385	c.1159G>A	c.(1159-1161)GAA>AAA	p.E387K	TLL2_uc009xvf.1_Missense_Mutation_p.E365K	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	387	CUB 1.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CCTACCTTTTCCCCTGGGGTG	0.522000													13	34					0	0	0.000308642	0	0
SLK	9748	broad.mit.edu	37	10	105778643	105778643	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr10:105778643C>T	uc001kxo.1	+	15	3143	c.3109C>T	c.(3109-3111)CAG>TAG	p.Q1037*	SLK_uc001kxp.1_Nonsense_Mutation_p.Q1006*	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	1037	Potential.				apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		GCAAAGACATCAGCTACTTAA	0.363000													37	57					0	0	0.00128727	0	0
MKI67	4288	broad.mit.edu	37	10	129906068	129906068	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr10:129906068G>A	uc001lke.2	-	13	4231	c.4036C>T	c.(4036-4038)CTG>TTG	p.L1346L	MKI67_uc001lkf.2_Silent_p.L986L|MKI67_uc009yav.1_Silent_p.L921L|MKI67_uc009yaw.1_Silent_p.L496L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1346	16 X 122 AA approximate repeats.|3.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AAGCCAGTCAGGTCTTCCAGA	0.522000													25	86					0	0	0.000586117	0	0
ABCC8	6833	broad.mit.edu	37	11	17417462	17417462	+	Missense_Mutation	SNP	G	A	A	rs137852673		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:17417462G>A	uc001mnc.2	-	34	4261	c.4135C>T	c.(4135-4137)CGC>TGC	p.R1379C		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1379	ATP 2 (Potential).|Cytoplasmic (By similarity).|ABC transporter 2.		R -> C (in TNDM2).		carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTGCCGGTGCGGCCGCAGATC	0.607000													22	78					0	0	0.000720815	0	0
MYBPC3	4607	broad.mit.edu	37	11	47364284	47364284	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:47364284C>G	uc001nfa.3	-	16	1524	c.1469G>C	c.(1468-1470)GGG>GCG	p.G490A	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	489	Ig-like C2-type 3.		G -> R (in CMH4).		cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		CAGCTCCACCCCGTCCTTCAG	0.622000													3	76					0	0	0.00024832	0	0
OR4C16	219428	broad.mit.edu	37	11	55339967	55339967	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:55339967G>A	uc010rih.1	+	1	364	c.364G>A	c.(364-366)GTG>ATG	p.V122M		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TGACCGCTATGTGGACATCTG	0.507000													38	88					0	0	0.00111076	0	0
OR5D14	219436	broad.mit.edu	37	11	55563175	55563175	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:55563175C>T	uc010rim.1	+	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TTGGGATGATCATAATAATCA	0.383000													17	44					0	0	0.00121646	0	0
NXF1	10482	broad.mit.edu	37	11	62566040	62566040	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:62566040G>A	uc001nvf.1	-	11	1160	c.1024C>T	c.(1024-1026)CGC>TGC	p.R342C	NXF1_uc001nvg.1_3'UTR|NXF1_uc009yog.1_Missense_Mutation_p.R385C|NXF1_uc010rmh.1_3'UTR	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	342	Interaction with THOC4.|LRR 3.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						AATCGTTCGCGAATGGCGCTG	0.488000													25	41					0	0	0.00178596	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782399	62782399	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:62782399C>T	uc001nwo.2	-	2	168	c.32G>A	c.(31-33)GGA>GAA	p.G11E	SLC22A8_uc001nwp.2_Missense_Mutation_p.G11E|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Missense_Mutation_p.G11E	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	11	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GCCCATGCTTCCCACACGGTC	0.592000													14	41					0	0	0.00185496	0	0
NRXN2	9379	broad.mit.edu	37	11	64434811	64434811	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:64434811C>T	uc001oar.2	-	10	2148	c.1709G>A	c.(1708-1710)GGA>GAA	p.G570E	NRXN2_uc001oas.2_Missense_Mutation_p.G539E|NRXN2_uc001oaq.2_Missense_Mutation_p.G237E	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	161	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GCCCCCAGATCCCATGTCCAG	0.622000													20	44					0	0	0.00188189	0	0
SSH3	54961	broad.mit.edu	37	11	67077377	67077377	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:67077377C>T	uc001okj.2	+	12	1525	c.1347C>T	c.(1345-1347)ATC>ATT	p.I449I	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Silent_p.I303I	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	449	Tyrosine-protein phosphatase.				regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TCCGGCCCATCGCCCGCCCCA	0.672000													11	100					0	0	0.00185496	0	0
FOLR1	2348	broad.mit.edu	37	11	71907152	71907152	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:71907152G>A	uc001orz.1	+	6	843	c.705G>A	c.(703-705)GGG>GGA	p.G235G	FOLR1_uc001osa.1_Silent_p.G235G|FOLR1_uc001osb.1_Silent_p.G235G|FOLR1_uc001osc.1_Silent_p.G235G|FOLR1_uc001osd.1_Silent_p.G235G	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	235					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						CCATGAGTGGGGCTGGGCCCT	0.612000													63	36					0	0	0.000781405	0	0
PCF11	51585	broad.mit.edu	37	11	82880148	82880148	+	Nonsense_Mutation	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr11:82880148C>G	uc001ozx.3	+	8	3116	c.2771C>G	c.(2770-2772)TCA>TGA	p.S924*	PCF11_uc010rsu.1_Nonsense_Mutation_p.S1055*	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	924	Gly-rich.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						CATGGTCCATCAGGGGCTGCG	0.527000													34	17					0	0	0.000692331	0	0
CD163L1	283316	broad.mit.edu	37	12	7585069	7585069	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:7585069G>A	uc001qsy.2	-	4	735	c.709C>T	c.(709-711)CGT>TGT	p.R237C	CD163L1_uc010sge.1_Missense_Mutation_p.R247C	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	237	SRCR 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CCCCATCCACGATGTCTGCAA	0.433000													17	36					0	0	0.000958276	0	0
GUCY2C	2984	broad.mit.edu	37	12	14839150	14839150	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:14839150G>A	uc001rcd.2	-	3	477	c.340C>T	c.(340-342)CGG>TGG	p.R114W	GUCY2C_uc009zhz.2_Missense_Mutation_p.R114W	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	114	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						CAGCCCATCCGTTGTGCATTC	0.438000													5	10					0	0	8.12818e-05	0	0
LUM	4060	broad.mit.edu	37	12	91502039	91502039	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:91502039C>T	uc001tbm.2	-	2	1107	c.718G>A	c.(718-720)GAA>AAA	p.E240K	LUM_uc001tbn.2_RNA	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	240	LRR 8.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						TCAGCCAGTTCGTTGTGAGAT	0.388000													17	27					0	0	0.000566183	0	0
VSIG10	54621	broad.mit.edu	37	12	118519988	118519988	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:118519988G>A	uc001tws.2	-	3	942	c.608C>T	c.(607-609)GCC>GTC	p.A203V		NM_019086	NP_061959	Q8N0Z9	VSI10_HUMAN	V-set and immunoglobulin domain containing 10	203	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane					0						CTGATTCAAGGCTAAACAGGT	0.517000													12	24					0	0	0.00136819	0	0
BCL7A	605	broad.mit.edu	37	12	122473294	122473294	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:122473294C>T	uc001ubp.2	+	3	369	c.232C>T	c.(232-234)CCG>TCG	p.P78S	BCL7A_uc001ubo.2_Missense_Mutation_p.P78S	NM_001024808	NP_001019979	Q4VC05	BCL7A_HUMAN	B-cell CLL/lymphoma 7A isoform b	78					negative regulation of transcription, DNA-dependent					ovary(1)|lung(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000202)|Epithelial(86;0.000386)|BRCA - Breast invasive adenocarcinoma(302;0.231)		GGTGACCACTCCGGAGAACAG	0.557000			T	MYC	BNHL								6	12					0	0	0.000157383	0	0
DNAH10	196385	broad.mit.edu	37	12	124284935	124284935	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:124284935G>A	uc001uft.3	+	14	2133	c.2108G>A	c.(2107-2109)AGG>AAG	p.R703K	DNAH10_uc010tav.1_Missense_Mutation_p.R245K|DNAH10_uc010taw.1_Missense_Mutation_p.R188K	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	703	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AAATTCCTTAGGTAAAAAAAT	0.234000													8	23					0	0	0.000274275	0	0
RNF17	56163	broad.mit.edu	37	13	25363493	25363493	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr13:25363493G>C	uc001upr.2	+	8	832	c.791G>C	c.(790-792)CGG>CCG	p.R264P	RNF17_uc010tdd.1_Missense_Mutation_p.R123P|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.R264P|RNF17_uc001ups.2_Missense_Mutation_p.R203P|RNF17_uc001upq.1_Missense_Mutation_p.R264P	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	264					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TAGATTATCCGGACTTTGCAG	0.338000													50	102					0	0	0.000781405	0	0
OR4K5	79317	broad.mit.edu	37	14	20389662	20389662	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:20389662G>A	uc010tkw.1	+	1	897	c.897G>A	c.(895-897)AGG>AGA	p.R299R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCCGTAAGGAAAATTGTGA	0.383000													23	135					0	0	0.00047179	0	0
RNF31	55072	broad.mit.edu	37	14	24620532	24620532	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:24620532C>T	uc001wmn.1	+	9	1930	c.1681C>T	c.(1681-1683)CGT>TGT	p.R561C	RNF31_uc001wml.1_Missense_Mutation_p.R410C|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Missense_Mutation_p.R320C|RNF31_uc001wmo.1_Missense_Mutation_p.R28C|RNF31_uc001wmp.2_RNA	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	561					CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		CTGGCTGGATCGTCATGGCAA	0.597000													11	14					0	0	0.00185496	0	0
NID2	22795	broad.mit.edu	37	14	52481052	52481052	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:52481052C>T	uc001wzo.2	-	16	3607	c.3373G>A	c.(3373-3375)GGC>AGC	p.G1125S	NID2_uc010tqs.1_Missense_Mutation_p.G1077S|NID2_uc010tqt.1_Missense_Mutation_p.G1125S|NID2_uc001wzp.2_Missense_Mutation_p.G1125S	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1125						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					AGCCTGGTGCCATTGAGGGGT	0.592000											OREG0022678	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	56					0	0	0.00121646	0	0
KIAA0247	9766	broad.mit.edu	37	14	70171364	70171364	+	Silent	SNP	A	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:70171364A>T	uc001xlk.2	+	4	679	c.363A>T	c.(361-363)ATA>ATT	p.I121I	KIAA0247_uc010aqz.2_Silent_p.I96I	NM_014734	NP_055549	Q92537	K0247_HUMAN	hypothetical protein LOC9766 precursor	121	Helical; (Potential).					integral to membrane				ovary(3)	3				all cancers(60;0.00155)|BRCA - Breast invasive adenocarcinoma(234;0.0164)|OV - Ovarian serous cystadenocarcinoma(108;0.0196)		CGCTGTCTATAGTGGCTTCTA	0.493000													9	25					0	0	0.000978159	0	0
FOS	2353	broad.mit.edu	37	14	75747272	75747272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:75747272G>A	uc001xrn.2	+	3	608	c.403G>A	c.(403-405)GAA>AAA	p.E135K	FOS_uc010tva.1_Intron|FOS_uc010asi.2_Missense_Mutation_p.E21K|FOS_uc001xro.2_5'UTR	NM_005252	NP_005243	P01100	FOS_HUMAN	v-fos FBJ murine osteosarcoma viral oncogene	135				SPEEEEKRRIRR -> ISRRRREKENPK (in Ref. 6; no nucleotide entry).	cellular response to reactive oxygen species|DNA methylation|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway		protein dimerization activity|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(2)|ovary(1)	3		all_lung(585;0.0138)|all_epithelial(191;0.0263)|all_neural(303;0.112)		BRCA - Breast invasive adenocarcinoma(234;0.0117)		GTTATCTCCAGAAGAAGAAGA	0.483000													6	9					0	0	0.00116845	0	0
TMEM63C	57156	broad.mit.edu	37	14	77706863	77706863	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:77706863G>A	uc001xtf.2	+	13	1188	c.976G>A	c.(976-978)GAC>AAC	p.D326N	TMEM63C_uc010asq.1_Missense_Mutation_p.D326N	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	326						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GCAGCTAACGGACGAGTTCAA	0.632000													4	5					0	0	0.00024832	0	0
BEGAIN	57596	broad.mit.edu	37	14	101012897	101012897	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:101012897C>T	uc010txa.1	-	2	263	c.117G>A	c.(115-117)CTG>CTA	p.L39L	BEGAIN_uc001yhp.2_5'UTR|BEGAIN_uc001yhq.2_Silent_p.L39L	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	39						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				GCTCGATCTCCAGGTAGTGGC	0.522000													9	22					0	0	0.000978159	0	0
ADAM6	8755	broad.mit.edu	37	14	106744117	106744117	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr14:106744117C>T	uc010tyt.1	-	502		c.16808_splice	c.e502+1							Parts of antibodies, mostly variable regions.												0						CACTGATGATCCCATAGCTGT	0.502000													5	20					0	0	0.00116845	0	0
CDAN1	146059	broad.mit.edu	37	15	43018511	43018511	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:43018511G>A	uc001zql.2	-	24	3318	c.3201C>T	c.(3199-3201)CGC>CGT	p.R1067R	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Silent_p.R393R	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	1067						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		AGCTCACCTGGCGGCACCGCA	0.642000													3	2					0	0	6.4e-05	0	0
UNC13C	440279	broad.mit.edu	37	15	54707217	54707217	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:54707217G>A	uc002ack.2	+	17	4885	c.4885G>A	c.(4885-4887)GAA>AAA	p.E1629K	UNC13C_uc002acl.2_Missense_Mutation_p.E459K	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1629					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AATAAGTGCCGAAATTATGTG	0.308000													16	36					0	0	0.00121646	0	0
RFX7	64864	broad.mit.edu	37	15	56388259	56388259	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:56388259G>A	uc010bfn.2	-	9	1667	c.1667C>T	c.(1666-1668)TCT>TTT	p.S556F	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.S370F	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	459					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AGCCTCATCAGAGTTCTCTTG	0.507000													5	13					0	0	0.000602214	0	0
RFX7	64864	broad.mit.edu	37	15	56390309	56390309	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:56390309G>A	uc010bfn.2	-	8	1077	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Silent_p.I173I	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	262					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						CTGCCACAACGATACCAATAG	0.403000													9	30					0	0	0.000673444	0	0
MTFMT	123263	broad.mit.edu	37	15	65297207	65297207	+	Silent	SNP	T	C	C			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:65297207T>C	uc002aof.3	-	8	986	c.960A>G	c.(958-960)CTA>CTG	p.L320L		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	320						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	AATAAACCAATAGTATTTGTG	0.294000													18	40					0	0	0.00152264	0	0
ITGA11	22801	broad.mit.edu	37	15	68624236	68624236	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:68624236G>A	uc002ari.2	-	14	1818	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	ITGA11_uc010bib.2_Silent_p.F577F	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	577	FG-GAP 6.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGAAGCCGTGGAAGATGTAGA	0.597000													4	12					0	0	0.00024832	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79059079	79059079	+	Silent	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:79059079C>G	uc002bej.3	-	19	3385	c.3174G>C	c.(3172-3174)GTG>GTC	p.V1058V	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1058					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CGTCCACAAACACGGGCCCCG	0.612000													14	22					0	0	0.000422831	0	0
SV2B	9899	broad.mit.edu	37	15	91769790	91769790	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:91769790G>T	uc002bqv.2	+	1	688	c.297G>T	c.(295-297)ATG>ATT	p.M99I	SV2B_uc002bqt.2_Missense_Mutation_p.M99I|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	99	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			AGACCATCATGGATGAGTGTG	0.587000													9	324					0.000442599	0.0031724	0.000442599	1	0
IGF1R	3480	broad.mit.edu	37	15	99500325	99500325	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr15:99500325C>T	uc002bul.2	+	21	3808	c.3758C>T	c.(3757-3759)CCC>CTC	p.P1253L	IGF1R_uc010bon.2_Missense_Mutation_p.P1252L	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	1253	Protein kinase.|Cytoplasmic (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	CAGTATAACCCCAAGATGAGG	0.572000													19	35					0	0	0.00188189	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													3	20					0	0	0.00024832	0	0
NDRG4	65009	broad.mit.edu	37	16	58543093	58543093	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr16:58543093G>A	uc002eno.2	+	12	919	c.813G>A	c.(811-813)CAG>CAA	p.Q271Q	NDRG4_uc002enk.2_Silent_p.Q303Q|NDRG4_uc002enm.2_Silent_p.Q323Q|NDRG4_uc010vif.1_Silent_p.Q303Q|NDRG4_uc010cdk.2_Silent_p.Q289Q|NDRG4_uc010vig.1_Silent_p.Q301Q|NDRG4_uc010vih.1_Silent_p.Q216Q|NDRG4_uc010vii.1_Silent_p.Q289Q|NDRG4_uc002enp.2_Silent_p.Q271Q|NDRG4_uc002enq.1_Intron	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	271					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						AGGTCACACAGGTGAGACTTT	0.597000													19	36					0	0	0.00074312	0	0
RLTPR	146206	broad.mit.edu	37	16	67686215	67686215	+	Silent	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr16:67686215C>G	uc002etn.2	+	27	2910	c.2790C>G	c.(2788-2790)CCC>CCG	p.P930P	RLTPR_uc010cel.1_Silent_p.P923P|RLTPR_uc010vjr.1_Silent_p.P894P|RLTPR_uc010vjs.1_5'Flank	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	930	Pro-rich.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TTTTCTTCCCCGaggagaagg	0.493000													3	43					0	0	0.00024832	0	0
OR1G1	8390	broad.mit.edu	37	17	3030350	3030350	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:3030350G>A	uc002fvc.1	-	1	496	c.496C>T	c.(496-498)CTG>TTG	p.L166L		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAAGGACAGGCTGTTCATC	0.522000													21	51					0	0	0.00188189	0	0
USP6	9098	broad.mit.edu	37	17	5076250	5076250	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:5076250G>A	uc002gau.1	+	38	6428	c.4198G>A	c.(4198-4200)GAA>AAA	p.E1400K	USP6_uc002gav.1_Missense_Mutation_p.E1400K|USP6_uc010ckz.1_Missense_Mutation_p.E1083K	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	1400					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						GTCTGATTACGAAAAGTACTC	0.463000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								13	21					0	0	0.000219431	0	0
MYH4	4622	broad.mit.edu	37	17	10352058	10352058	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:10352058C>T	uc002gmn.2	-	32	4519	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1470	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCCTCAAGTTCAGCCTGAGTT	0.453000													12	35					0	0	0.000308642	0	0
MYH4	4622	broad.mit.edu	37	17	10358038	10358038	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:10358038G>A	uc002gmn.2	-	22	2636	c.2525C>T	c.(2524-2526)CCC>CTC	p.P842L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	842					muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTGAGGAGGGGCTTGATCTT	0.448000													16	49					0	0	0.00121646	0	0
RICH2	9912	broad.mit.edu	37	17	12844381	12844381	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:12844381C>T	uc002gnr.3	+	8	918	c.591C>T	c.(589-591)CTC>CTT	p.L197L	RICH2_uc010vvk.1_Silent_p.L197L|RICH2_uc010vvl.1_Silent_p.L197L|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Silent_p.L197L|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	197	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						AGGACCAGCTCTCAGCTGATA	0.413000													11	45					0	0	0.00136819	0	0
NT5C3L	115024	broad.mit.edu	37	17	39992141	39992141	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:39992141G>A	uc002hyc.3	-	2	192	c.183C>T	c.(181-183)GCC>GCT	p.A61A	NT5C3L_uc010wfu.1_5'Flank|NT5C3L_uc002hyb.3_5'UTR|NT5C3L_uc002hyd.3_5'UTR|NT5C3L_uc002hxy.3_Silent_p.A19A|NT5C3L_uc002hxz.3_5'UTR|NT5C3L_uc002hya.3_Silent_p.A19A|KLHL10_uc010cxr.2_5'Flank|KLHL10_uc010wfv.1_5'Flank|KLHL10_uc010wfw.1_5'Flank	NM_052935	NP_443167	C9JKC4	C9JKC4_HUMAN	5'-nucleotidase, cytosolic III-like	27						cytoplasm	5'-nucleotidase activity|magnesium ion binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.15)		CCTTGCGGAGGGCGCCCACGA	0.711000													4	11					0	0	0.000602214	0	0
DCAKD	79877	broad.mit.edu	37	17	43111675	43111675	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:43111675G>A	uc002ihx.2	-	2	452	c.196C>T	c.(196-198)CGC>TGC	p.R66C	DCAKD_uc010daa.1_Missense_Mutation_p.R66C|DCAKD_uc010dab.1_Missense_Mutation_p.R66C|DCAKD_uc002ihy.2_Missense_Mutation_p.R66C	NM_024819	NP_079095	Q8WVC6	DCAKD_HUMAN	dephospho-CoA kinase domain containing	66	DPCK.				coenzyme A biosynthetic process		ATP binding|dephospho-CoA kinase activity				0		Prostate(33;0.155)				AGGACCTTGCGATTTATGTCG	0.597000													10	23					0	0	0.000442599	0	0
OR4D1	26689	broad.mit.edu	37	17	56232787	56232787	+	Silent	SNP	G	A	A	rs17222013		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:56232787G>A	uc010wno.1	+	1	273	c.273G>A	c.(271-273)ACG>ACA	p.T91T	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGACCAAGACGATCTCCTACC	0.498000													50	59					0	0	0.000781405	0	0
LPO	4025	broad.mit.edu	37	17	56326478	56326478	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:56326478C>T	uc002ivt.2	+	5	699	c.383C>T	c.(382-384)CCC>CTC	p.P128L	LPO_uc010dco.2_Missense_Mutation_p.P128L|LPO_uc010wnr.1_Missense_Mutation_p.P45L|LPO_uc010wns.1_Missense_Mutation_p.P69L|LPO_uc010dcp.2_Missense_Mutation_p.P45L|LPO_uc010dcq.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	128					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GCTCCTGCTCCCGTGGTGAGA	0.597000													14	65					0	0	0.000308642	0	0
C17orf28	283987	broad.mit.edu	37	17	72958362	72958362	+	Missense_Mutation	SNP	G	A	A	rs142613998		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr17:72958362G>A	uc002jmj.3	-	5	727	c.578C>T	c.(577-579)TCC>TTC	p.S193F	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.S192F	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	193						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					AGGCTGGGGGGAGTGAGCGAA	0.657000													12	22					0	0	0.000308642	0	0
ZNF521	25925	broad.mit.edu	37	18	22806369	22806369	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr18:22806369G>A	uc002kvk.2	-	4	1760	c.1513C>T	c.(1513-1515)CCT>TCT	p.P505S	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.P505S|ZNF521_uc002kvl.2_Missense_Mutation_p.P285S	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	505					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TTAGCTGCAGGGTTTGCAAAT	0.443000			T	PAX5	ALL								10	40					0	0	0.000673444	0	0
SMAD4	4089	broad.mit.edu	37	18	48575077	48575077	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr18:48575077C>T	uc010xdp.1	+	3	809	c.271C>T	c.(271-273)CCT>TCT	p.P91S	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	91	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(4)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		GAAAGGATTTCCTCATGTGAT	0.259000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				13	17					0	0	0.00185496	0	0
SALL3	27164	broad.mit.edu	37	18	76754643	76754643	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr18:76754643C>T	uc002lmt.2	+	2	2652	c.2652C>T	c.(2650-2652)GGC>GGT	p.G884G	SALL3_uc010dra.2_Silent_p.G491G	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	884					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CGGCCGTGGGCGACCTGGAGA	0.701000													7	18					0	0	8.12818e-05	0	0
INSR	3643	broad.mit.edu	37	19	7125493	7125493	+	Missense_Mutation	SNP	C	T	T	rs121913148		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr19:7125493C>T	uc002mgd.1	-	17	3168	c.3059G>A	c.(3058-3060)CGA>CAA	p.R1020Q	INSR_uc002mge.1_Missense_Mutation_p.R1008Q	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1020	Cytoplasmic (Potential).		R -> Q (in IRAN type A).		activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GATCTTCTCTCGAGACACCTC	0.572000													71	67					0	0	0.000781405	0	0
LPHN1	22859	broad.mit.edu	37	19	14263412	14263412	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr19:14263412C>T	uc010xnn.1	-	21	3748	c.3452G>A	c.(3451-3453)AGG>AAG	p.R1151K	LPHN1_uc010xno.1_Missense_Mutation_p.R1146K|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1151	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						ATTCCACATCCTCCGAATTCG	0.562000													4	7					0	0	0.00116845	0	0
NCAN	1463	broad.mit.edu	37	19	19338872	19338872	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr19:19338872G>A	uc002nlz.2	+	8	2542	c.2443G>A	c.(2443-2445)GAG>AAG	p.E815K	NCAN_uc010ecc.1_Missense_Mutation_p.E379K	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	815					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCCAAATTTGGAGCCTTGGGT	0.567000													14	15					0	0	0.000219431	0	0
ZNF615	284370	broad.mit.edu	37	19	52496598	52496598	+	Silent	SNP	T	C	C			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr19:52496598T>C	uc002pye.1	-	6	2023	c.1731A>G	c.(1729-1731)TTA>TTG	p.L577L	ZNF615_uc002pyf.1_Silent_p.L588L|ZNF615_uc002pyg.1_Silent_p.L469L|ZNF615_uc002pyh.1_Silent_p.L588L|ZNF615_uc010epi.1_Silent_p.L584L|ZNF615_uc010ydg.1_Silent_p.L582L	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	577	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TTTTCCCAGTTAAGCCTTTGC	0.448000													20	47					0	0	0.000375601	0	0
PPP1CB	5500	broad.mit.edu	37	2	28999833	28999833	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:28999833C>T	uc002rmg.2	+	3	329	c.169C>T	c.(169-171)CCG>TCG	p.P57S	PPP1CB_uc010ymj.1_Missense_Mutation_p.P29S|PPP1CB_uc010ymk.1_Missense_Mutation_p.P29S|PPP1CB_uc010yml.1_Missense_Mutation_p.P29S|PPP1CB_uc002rmh.2_Missense_Mutation_p.P57S	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	57					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					ATTGGAAGCACCGCTGAAAAT	0.383000													21	52					0	0	0.00188189	0	0
FAM179A	165186	broad.mit.edu	37	2	29240666	29240666	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:29240666C>T	uc010ezl.2	+	10	1555	c.1204C>T	c.(1204-1206)CCC>TCC	p.P402S	FAM179A_uc010ymm.1_Intron|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	402							binding			ovary(3)|skin(1)	4						AGGCCTCCTTCCCCTCCGGGG	0.567000													5	6					0	0	8.12818e-05	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48818852	48818852	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:48818852C>T	uc010yol.1	+	2	2038	c.1991C>T	c.(1990-1992)CCC>CTC	p.P664L	STON1_uc002rwo.3_Missense_Mutation_p.P664L|STON1_uc010fbm.2_Missense_Mutation_p.P664L|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P664L|STON1_uc002rwr.2_Intron|STON1_uc002rwq.2_Missense_Mutation_p.P664L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	664					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAAGAAATTCCCTCTGATTGG	0.438000													20	65					0	0	0.000586117	0	0
NRXN1	9378	broad.mit.edu	37	2	50699451	50699451	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:50699451C>T	uc010fbq.2	-	16	4826	c.3349G>A	c.(3349-3351)GAG>AAG	p.E1117K	NRXN1_uc002rxb.3_Missense_Mutation_p.E749K|NRXN1_uc002rxe.3_Missense_Mutation_p.E1077K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CATCCTCTCTCGATCTGTCCG	0.433000													5	18					0	0	0.00116845	0	0
DNAH6	1768	broad.mit.edu	37	2	84780075	84780075	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:84780075G>A	uc010fgb.2	+	10	1656	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	DNAH6_uc002soo.2_Missense_Mutation_p.E86K|DNAH6_uc002sop.2_Missense_Mutation_p.E86K	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	507	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						AGAAGAAGATGAATCTCTCAT	0.378000													11	38					0	0	0.000673444	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521370	125521370	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:125521370G>A	uc002tno.2	+	15	2717	c.2353G>A	c.(2353-2355)GGT>AGT	p.G785S	CNTNAP5_uc010flu.2_Missense_Mutation_p.G786S	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	785	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCGTTGCTATGGTGACCGTGA	0.458000													5	22					0	0	8.12818e-05	0	0
PRPF40A	55660	broad.mit.edu	37	2	153572514	153572514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:153572514C>T	uc002tyi.2	-	2	305	c.292G>A	c.(292-294)GGA>AGA	p.G98R	ARL6IP6_uc002tyn.2_5'Flank|ARL6IP6_uc002tym.2_5'Flank|PRPF40A_uc002tyh.3_Missense_Mutation_p.G71R|PRPF40A_uc010zcd.1_Missense_Mutation_p.G71R|PRPF40A_uc002tyj.2_5'UTR|PRPF40A_uc002tyl.1_Missense_Mutation_p.G98R	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	98					mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						CTTACTTGTCCCATTGGTGGC	0.433000													26	84					0	0	0.001512	0	0
XIRP2	129446	broad.mit.edu	37	2	168103476	168103476	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:168103476G>A	uc002udx.2	+	8	5592	c.5574G>A	c.(5572-5574)ACG>ACA	p.T1858T	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.T1683T|XIRP2_uc010fpq.2_Silent_p.T1636T|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1683					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAACAGTGACGAAAACAGAAG	0.383000													12	29					0	0	0.00185496	0	0
ITGA6	3655	broad.mit.edu	37	2	173349959	173349959	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:173349959G>A	uc002uhp.1	+	13	2024	c.1821G>A	c.(1819-1821)CTG>CTA	p.L607L	ITGA6_uc010zdy.1_Silent_p.L488L|ITGA6_uc002uho.1_Silent_p.L607L|ITGA6_uc010fqm.1_Silent_p.L253L	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	646	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			TTCCAATTCTGAATTCAGATG	0.408000													16	43					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179489312	179489312	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:179489312C>T	uc010zfg.1	-	191	37215	c.36991G>A	c.(36991-36993)GAA>AAA	p.E12331K	TTN_uc010zfh.1_Missense_Mutation_p.E6026K|TTN_uc010zfi.1_Missense_Mutation_p.E5959K|TTN_uc010zfj.1_Missense_Mutation_p.E5834K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13258							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAACAATTTCATACTTCTTG	0.408000													14	32					0	0	0.000308642	0	0
DNAH7	56171	broad.mit.edu	37	2	196834754	196834754	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:196834754G>A	uc002utj.3	-	17	2224	c.2123C>T	c.(2122-2124)TCA>TTA	p.S708L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	708	Stem (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCTCCAAATGAATAAAATTC	0.328000													16	48					0	0	0.000566183	0	0
PGAP1	80055	broad.mit.edu	37	2	197784798	197784798	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:197784798G>A	uc002utw.2	-	2	338	c.224C>T	c.(223-225)GCT>GTT	p.A75V	PGAP1_uc002utx.2_5'UTR|PGAP1_uc002uty.1_Missense_Mutation_p.A75V|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_5'UTR	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	75	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						GTGTTCTTCAGCATAGGATCC	0.368000													29	67					0	0	0.00058488	0	0
NBEAL1	65065	broad.mit.edu	37	2	204062079	204062079	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:204062079C>T	uc002uzt.3	+	47	7339	c.7006C>T	c.(7006-7008)CGT>TGT	p.R2336C	NBEAL1_uc002uzs.3_Intron	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2336							binding			ovary(1)|skin(1)	2						AAATCAGTATCGTTCTTTTAT	0.363000													118	250					0	0	0.000781405	0	0
SP140	11262	broad.mit.edu	37	2	231108475	231108475	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:231108475G>A	uc002vql.2	+	5	635	c.520G>A	c.(520-522)GAT>AAT	p.D174N	SP140_uc010zma.1_RNA|SP140_uc002vqk.2_Missense_Mutation_p.D174N|SP140_uc002vqn.2_Missense_Mutation_p.D174N|SP140_uc002vqm.2_Missense_Mutation_p.D174N|SP140_uc010fxl.2_Missense_Mutation_p.D174N	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	174					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TGAAATGGATGATATAGCAGT	0.473000													29	51					0	0	0.000814825	0	0
FARP2	9855	broad.mit.edu	37	2	242380758	242380758	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr2:242380758C>G	uc002wbi.1	+	13	1315	c.1198C>G	c.(1198-1200)CCA>GCA	p.P400A	FARP2_uc010zoq.1_Missense_Mutation_p.P400A|FARP2_uc010zor.1_Missense_Mutation_p.P400A|uc002wbj.2_5'Flank	NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	400					axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		TCCTGCCTCCCCATCTTCAGC	0.488000													3	40					0	0	6.4e-05	0	0
PTPRT	11122	broad.mit.edu	37	20	40827983	40827983	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr20:40827983C>T	uc002xkg.2	-	16	2572	c.2388G>A	c.(2386-2388)AGG>AGA	p.R796R	PTPRT_uc010ggj.2_Silent_p.R815R|PTPRT_uc010ggi.2_5'UTR	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	796	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCCCATCTCCCTCTGGGCTC	0.557000													94	78					0	0	0.000781405	0	0
SIM2	6493	broad.mit.edu	37	21	38114028	38114028	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr21:38114028G>A	uc002yvr.2	+	8	917	c.861G>A	c.(859-861)AAG>AAA	p.K287K	SIM2_uc002yvq.2_Silent_p.K287K	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	287	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						TGTTGGTGAAGGGCCAGGTCA	0.647000													5	19					0	0	8.12818e-05	0	0
UBASH3A	53347	broad.mit.edu	37	21	43864730	43864730	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr21:43864730G>A	uc002zbe.2	+	14	1861	c.1825G>A	c.(1825-1827)GAT>AAT	p.D609N	UBASH3A_uc002zbf.2_Missense_Mutation_p.D571N|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	609	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						GGAATGTGGGGATTTTGCCCA	0.567000													28	65					0	0	0.00106085	0	0
CBS	875	broad.mit.edu	37	21	44485500	44485500	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr21:44485500G>A	uc002zcu.2	-	7	908	c.663C>T	c.(661-663)GAC>GAT	p.D221D	CBS_uc002zcs.1_Silent_p.D116D|CBS_uc002zct.2_Silent_p.D221D|CBS_uc002zcw.3_Silent_p.D221D|CBS_uc002zcv.2_Silent_p.D221D	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	221					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	GCCTCACCTGGTCTAGGATGT	0.622000													48	135					0	0	0.000781405	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617000													7	10					0	0	8.12818e-05	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659591	24659591	+	RNA	SNP	A	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:24659591A>G	uc002zzs.3	+	7		c.3323A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ACTCACTGACATCGAAGGCTG	0.632000													4	9					0	0	0.00024832	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659593	24659593	+	RNA	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:24659593C>T	uc002zzs.3	+	7		c.3325C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TCACTGACATCGAAGGCTGCC	0.632000													5	10					0	0	0.000602214	0	0
SEZ6L	23544	broad.mit.edu	37	22	26747191	26747191	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:26747191C>T	uc003acb.2	+	12	2737	c.2581C>T	c.(2581-2583)CGC>TGC	p.R861C	SEZ6L_uc003acc.2_Missense_Mutation_p.R861C|SEZ6L_uc011akc.1_Missense_Mutation_p.R861C|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Missense_Mutation_p.R861C|SEZ6L_uc003ace.2_Missense_Mutation_p.R861C|SEZ6L_uc003acf.1_Missense_Mutation_p.R634C|SEZ6L_uc010gvc.1_Missense_Mutation_p.R634C|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	861	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGGACGTCTCGCCTGCCCCA	0.532000													14	38					0	0	0.000308642	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120766	38120766	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:38120766C>T	uc003atr.2	+	7	2474	c.2203C>T	c.(2203-2205)CGC>TGC	p.R735C	TRIOBP_uc003atu.2_Missense_Mutation_p.R563C|TRIOBP_uc003atq.1_Missense_Mutation_p.R735C|TRIOBP_uc003ats.1_Missense_Mutation_p.R563C	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	735					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AGCCTCCTCTCGCAACAGAAC	0.572000													10	27					0	0	0.000673444	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41277926	41277926	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:41277926C>T	uc003azh.2	+	3	426	c.334C>T	c.(334-336)CCC>TCC	p.P112S	XPNPEP3_uc011aox.1_Missense_Mutation_p.P112S|XPNPEP3_uc003azi.2_Missense_Mutation_p.P33S|XPNPEP3_uc011aoy.1_RNA|XPNPEP3_uc010gyh.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	112					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						CAACGATATTCCCTATACTTT	0.468000													13	42					0	0	0.00185496	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41742066	41742066	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:41742066G>A	uc003azw.2	+	14	1735	c.1519G>A	c.(1519-1521)GAG>AAG	p.E507K	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	523	C3H1-type 1.				interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						CTACCATCAGGAGGAGATCGA	0.607000													30	69					0	0	0.000491102	0	0
CNTN6	27255	broad.mit.edu	37	3	1262438	1262438	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:1262438A>T	uc003boz.2	+	3	390	c.123A>T	c.(121-123)TTA>TTT	p.L41F	CNTN6_uc010hbo.2_Missense_Mutation_p.L36F|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.L41F	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	41	Ig-like C2-type 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CTTTGGATTTATCAAAATCTG	0.388000													23	54					0	0	0.000295444	0	0
LRRFIP2	9209	broad.mit.edu	37	3	37151058	37151058	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:37151058G>A	uc003cgp.2	-	12	992	c.569C>T	c.(568-570)TCT>TTT	p.S190F	LRRFIP2_uc011ayf.1_Intron|LRRFIP2_uc003cgr.2_Intron|LRRFIP2_uc003cgs.3_Intron|LRRFIP2_uc003cgt.3_Intron	NM_006309	NP_006300	Q9Y608	LRRF2_HUMAN	leucine rich repeat (in FLII) interacting	190	DVL3-binding.|Ser-rich.				Wnt receptor signaling pathway		LRR domain binding			ovary(1)	1						TGCAGTAGGAGAGGCCTAAGA	0.433000													25	52					0	0	0.00106085	0	0
PTH1R	5745	broad.mit.edu	37	3	46944049	46944049	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:46944049C>T	uc003cqm.2	+	14	1448	c.1245C>T	c.(1243-1245)CCC>CCT	p.P415P	PTH1R_uc003cqn.2_Silent_p.P415P	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	415	Helical; Name=6; (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TGCTCATGCCCCTCTTTGGCG	0.577000									Ollier_disease_/_Maffuci_syndrome				3	6					0	0	6.4e-05	0	0
ALCAM	214	broad.mit.edu	37	3	105266008	105266008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:105266008C>T	uc003dvx.2	+	10	1660	c.1120C>T	c.(1120-1122)CGA>TGA	p.R374*	ALCAM_uc003dvw.1_Nonsense_Mutation_p.R374*|ALCAM_uc003dvy.2_Nonsense_Mutation_p.R374*|ALCAM_uc010hpp.2_Nonsense_Mutation_p.R96*|ALCAM_uc003dvz.2_Nonsense_Mutation_p.R8*	NM_001627	NP_001618	Q13740	CD166_HUMAN	activated leukocyte cell adhesion molecule	374	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(2)|breast(1)	3						CATCAGGCTTCGATCTAGCCC	0.353000													23	56					0	0	0.000586117	0	0
SLC15A2	6565	broad.mit.edu	37	3	121647356	121647356	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:121647356G>A	uc003eep.2	+	15	1448	c.1295G>A	c.(1294-1296)GGA>GAA	p.G432E	SLC15A2_uc011bjn.1_Missense_Mutation_p.G401E	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	432					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	ACAGTGGTGGGAAATGAAAAC	0.443000													18	56					0	0	0.000958276	0	0
MYNN	55892	broad.mit.edu	37	3	169497049	169497049	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:169497049G>T	uc003fft.2	+	3	1189	c.760G>T	c.(760-762)GTT>TTT	p.V254F	MYNN_uc011bpm.1_Missense_Mutation_p.V140F|MYNN_uc003ffu.2_Missense_Mutation_p.V254F|MYNN_uc003ffv.2_5'UTR|MYNN_uc010hwo.2_Missense_Mutation_p.V254F|MYNN_uc003ffw.1_RNA	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			TGTGCACACTGTTACAGTGAA	0.403000													8	26					6.5536e-12	4.7257e-11	0.000157383	1	0
TP63	8626	broad.mit.edu	37	3	189526123	189526123	+	Silent	SNP	G	A	A	rs151335217	byFrequency	TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr3:189526123G>A	uc003fry.2	+	4	476	c.387G>A	c.(385-387)TCG>TCA	p.S129S	TP63_uc003frx.2_Silent_p.S129S|TP63_uc003frz.2_Silent_p.S129S|TP63_uc010hzc.1_Silent_p.S129S|TP63_uc003fsa.2_Silent_p.S35S|TP63_uc003fsb.2_Silent_p.S35S|TP63_uc003fsc.2_Silent_p.S35S|TP63_uc003fsd.2_Silent_p.S35S|TP63_uc010hzd.1_Intron|TP63_uc003fse.1_Silent_p.S10S	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	129			S -> L.		anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACGGCTCCTCGTCCACCAGTC	0.592000									Hay-Wells_syndrome	HNSCC(45;0.13)			17	21					0	0	0.000422831	0	0
SLC26A1	10861	broad.mit.edu	37	4	985298	985298	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:985298G>A	uc003gcb.2	-	3	572	c.194C>T	c.(193-195)CCG>CTG	p.P65L	SLC26A1_uc003gbx.2_Missense_Mutation_p.P65L|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.P65L	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	65						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GTACTCCCGCGGGCGGTACTG	0.692000													7	20					0	0	0.000157383	0	0
KLF3	51274	broad.mit.edu	37	4	38690508	38690508	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:38690508G>A	uc003gth.3	+	3	692	c.360G>A	c.(358-360)CCG>CCA	p.P120P	KLF3_uc003gtg.2_Silent_p.P120P	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	120	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						TCGGCGTGCCGCTGTCCATGC	0.647000													10	36					0	0	0.000442599	0	0
PROL1	58503	broad.mit.edu	37	4	71275679	71275679	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:71275679C>T	uc003hfi.2	+	3	808	c.634C>T	c.(634-636)CCT>TCT	p.P212S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	212	Thr-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CGCCAACCGTCCTCACACAGT	0.453000													21	48					0	0	0.00152264	0	0
ENAM	10117	broad.mit.edu	37	4	71509542	71509542	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:71509542C>T	uc011caw.1	+	9	2680	c.2399C>T	c.(2398-2400)CCA>CTA	p.P800L		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	800					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCAGCTAGGCCACCAGACCAG	0.463000													9	31					0	0	0.000673444	0	0
CCDC158	339965	broad.mit.edu	37	4	77252515	77252515	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:77252515G>A	uc003hkb.3	-	20	3065	c.2912C>T	c.(2911-2913)TCA>TTA	p.S971L		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	971	Ser-rich.									skin(3)|ovary(2)|pancreas(1)	6						AGTTTCACTTGATTTGCTTCC	0.333000													28	74					0	0	0.000339439	0	0
FAM13A	10144	broad.mit.edu	37	4	89670943	89670943	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:89670943G>A	uc003hse.1	-	16	2266	c.2058C>T	c.(2056-2058)TTC>TTT	p.F686F	FAM13A_uc003hsa.1_Silent_p.F157F|FAM13A_uc003hsb.1_Silent_p.F360F|FAM13A_uc003hsd.1_Silent_p.F360F|FAM13A_uc003hsc.1_Silent_p.F346F|FAM13A_uc011cdq.1_Silent_p.F332F|FAM13A_uc003hsf.1_Silent_p.F272F|FAM13A_uc003hsg.1_Silent_p.F157F|FAM13A_uc010ikr.1_Silent_p.F182F	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	686	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TCTCTTCTTCGAATCTATCTT	0.473000													10	16					0	0	0.000442599	0	0
ADH6	130	broad.mit.edu	37	4	100137326	100137326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:100137326G>A	uc003hup.3	-	2	206	c.112C>T	c.(112-114)CGC>TGC	p.R38C	uc003hum.1_Intron|ADH6_uc003huo.2_Missense_Mutation_p.R38C|ADH6_uc011cef.1_5'UTR|ADH6_uc010ile.2_Missense_Mutation_p.R38C	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	38					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	ACCTTTATGCGAACTTCCTTT	0.393000													17	30					0	0	0.000566183	0	0
MFSD8	256471	broad.mit.edu	37	4	128870972	128870972	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:128870972G>A	uc003ifp.2	-	4	348	c.185C>T	c.(184-186)CCA>CTA	p.P62L	MFSD8_uc011cgu.1_Missense_Mutation_p.P17L|MFSD8_uc011cgv.1_Missense_Mutation_p.P62L|MFSD8_uc011cgw.1_RNA|MFSD8_uc011cgx.1_Missense_Mutation_p.P17L	NM_152778	NP_689991	Q8NHS3	MFSD8_HUMAN	major facilitator superfamily domain containing	62	Extracellular (Potential).				cell death|transmembrane transport	integral to membrane|lysosomal membrane				ovary(1)|liver(1)	2						TTGGAGATATGGCCATATGGA	0.308000													26	94					0	0	0.00128727	0	0
ZFP42	132625	broad.mit.edu	37	4	188924786	188924786	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr4:188924786C>T	uc003izg.1	+	3	1070	c.825C>T	c.(823-825)TTC>TTT	p.F275F	ZFP42_uc003izh.1_Silent_p.F275F|ZFP42_uc003izi.1_Silent_p.F275F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	275	C2H2-type 4.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		AGAAACGTTTCGTGTGTCCCT	0.488000													32	33					0	0	0.000339439	0	0
SLC9A3	6550	broad.mit.edu	37	5	475069	475069	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:475069G>A	uc003jbe.2	-	16	2542	c.2430C>T	c.(2428-2430)TCC>TCT	p.S810S	SLC9A3_uc011clx.1_Silent_p.S801S|LOC25845_uc003jbd.2_5'Flank|LOC25845_uc010itb.1_5'Flank	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	810	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			AGGAGTCCACGGACTTGCTGC	0.711000													4	19					0	0	0.000602214	0	0
NSA2	10412	broad.mit.edu	37	5	74066456	74066456	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:74066456G>A	uc003kdk.1	+	4	426	c.343G>A	c.(343-345)GGA>AGA	p.G115R		NM_014886	NP_055701	O95478	NSA2_HUMAN	NSA2 ribosome biogenesis homolog	115	Lys-rich.				rRNA processing	nucleolus|ribonucleoprotein complex				ovary(1)	1						ATATTTTTAGGGAAAATGGGA	0.328000													13	46					0	0	0.000566183	0	0
SRP19	6728	broad.mit.edu	37	5	112200167	112200167	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:112200167C>T	uc003kqc.2	+	3	212	c.131C>T	c.(130-132)CCT>CTT	p.P44L	SRP19_uc003kqb.1_Missense_Mutation_p.P44L|SRP19_uc011cvu.1_5'UTR|SRP19_uc011cvv.1_5'UTR	NM_003135	NP_003126	P09132	SRP19_HUMAN	signal recognition particle 19kDa	44					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		GTTGAAAATCCTACAGCTACA	0.338000													15	42					0	0	0.000308642	0	0
FAM53C	51307	broad.mit.edu	37	5	137677062	137677062	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:137677062C>T	uc003lcv.2	+	2	508	c.38C>T	c.(37-39)ACT>ATT	p.T13I	FAM53C_uc003lcw.2_Missense_Mutation_p.T13I|FAM53C_uc011cyq.1_RNA|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	13										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CAGAAGCAGACTCTGGATGAG	0.488000													24	32					0	0	0.000586117	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515662	140515662	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:140515662G>A	uc003liq.2	+	1	863	c.646G>A	c.(646-648)GAC>AAC	p.D216N		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	216	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACTGCACTGGACGGTGGGGC	0.547000													21	30					0	0	0.00121646	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149225411	149225411	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr5:149225411G>A	uc003lrc.2	+	11	2947	c.2905G>A	c.(2905-2907)GAG>AAG	p.E969K	PPARGC1B_uc003lrb.1_Missense_Mutation_p.E969K|PPARGC1B_uc003lrd.2_Missense_Mutation_p.E930K|PPARGC1B_uc003lrf.2_Missense_Mutation_p.E948K|PPARGC1B_uc003lre.1_Missense_Mutation_p.E948K	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	969	RRM.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GAAGCGCAACGAGCCCTCCTT	0.612000													14	10					0	0	0.00185496	0	0
OR14J1	442191	broad.mit.edu	37	6	29275146	29275146	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr6:29275146C>T	uc011dln.1	+	1	680	c.680C>T	c.(679-681)CCA>CTA	p.P227L		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGAGAATCCCATCAGCTGAG	0.493000													58	36					0	0	0.000781405	0	0
HSPA1A	3303	broad.mit.edu	37	6	31785399	31785399	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr6:31785399C>T	uc003nxj.2	+	1	2109	c.1866C>T	c.(1864-1866)TTC>TTT	p.F622F	HSPA1L_uc003nxh.2_5'Flank|HSPA1L_uc010jte.2_5'Flank|HSPA1A_uc003nxi.1_Silent_p.F457F|uc011dok.1_RNA	NM_005345	NP_005336	P08107	HSP71_HUMAN	heat shock 70kDa protein 1A	622					anti-apoptosis|mRNA catabolic process|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of inclusion body assembly|protein refolding|response to unfolded protein	cytosol|endoplasmic reticulum|inclusion body|mitochondrion|nuclear speck|perinuclear region of cytoplasm|ribonucleoprotein complex	ATP binding|protein binding involved in protein folding|protein N-terminus binding|receptor activity|ubiquitin protein ligase binding|unfolded protein binding			ovary(1)	1						CTGGGGGCTTCGGGGCTCAGG	0.587000													191	162					0	0	0.000781405	0	0
LHFPL5	222662	broad.mit.edu	37	6	35782490	35782490	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr6:35782490T>A	uc003olg.1	+	2	957	c.580T>A	c.(580-582)TTC>ATC	p.F194I		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	194	Helical; (Potential).					integral to membrane				skin(1)	1						CATCCTCTCCTTCCTGGCCTT	0.612000													13	11					0	0	0.00185496	0	0
UBR2	23304	broad.mit.edu	37	6	42656026	42656027	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr6:42656026_42656027CC>TT	uc011dur.1	+	45	4926_4927	c.4926_4927CC>TT	c.(4924-4929)TCCCAG>TCTTAG	p.Q1643*	UBR2_uc011dus.1_Nonsense_Mutation_p.Q1288*|UBR2_uc003osh.2_RNA|UBR2_uc011dut.1_Nonsense_Mutation_p.Q231*|UBR2_uc011duu.1_Nonsense_Mutation_p.Q35*	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1643					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TGCTGTGCTCCCAGAGTTACTG	0.550000													62	48					0	0	6.4e-05	0	0
INTS1	26173	broad.mit.edu	37	7	1526267	1526267	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:1526267G>A	uc003skn.2	-	22	3071	c.2970C>T	c.(2968-2970)GCC>GCT	p.A990A	INTS1_uc003skp.1_Silent_p.A337A	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	990					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		TCACCTTCATGGCCAGCACGC	0.512000													5	16					0	0	8.12818e-05	0	0
AMZ1	155185	broad.mit.edu	37	7	2740214	2740214	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:2740214C>T	uc003smr.1	+	2	490	c.129C>T	c.(127-129)TTC>TTT	p.F43F	AMZ1_uc003sms.1_Silent_p.F43F|AMZ1_uc011jwa.1_5'Flank	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	43							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		AGCGGCTCTTCCTGGCCGAGG	0.672000													36	130					0	0	0.000509022	0	0
DNAH11	8701	broad.mit.edu	37	7	21818633	21818633	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:21818633C>T	uc003svc.2	+	58	9446	c.9415C>T	c.(9415-9417)CAT>TAT	p.H3139Y		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3139	Stalk (By similarity).|Potential.				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACTGAGAAATCATGATGCCGA	0.488000									Kartagener_syndrome				8	11					0	0	0.000274275	0	0
TBRG4	9238	broad.mit.edu	37	7	45148639	45148639	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:45148639G>A	uc003tmv.2	-	2	324	c.198C>T	c.(196-198)CCC>CCT	p.P66P	TBRG4_uc003tmu.2_5'Flank|TBRG4_uc003tmw.2_Silent_p.P66P|TBRG4_uc003tmx.2_Silent_p.P66P|TBRG4_uc011kcd.1_Silent_p.P77P|SNORA5B_uc003tna.3_5'Flank	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	66					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						TCTCTATGTAGGGAGTAGATG	0.557000													18	50					0	0	0.00074312	0	0
AZGP1	563	broad.mit.edu	37	7	99564802	99564802	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:99564802G>A	uc003ush.2	-	4	765	c.721C>T	c.(721-723)CGG>TGG	p.R241W		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	241	Ig-like C1-type.				antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TCGCCGGCCCGAGTCCAGTGC	0.582000													8	15					0	0	0.000157383	0	0
ORAI2	80228	broad.mit.edu	37	7	102079431	102079431	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:102079431G>A	uc010lhz.1	+	3	263	c.28G>A	c.(28-30)GAC>AAC	p.D10N	ORAI2_uc003uzj.2_Missense_Mutation_p.D10N|ORAI2_uc003uzk.2_Missense_Mutation_p.D10N|ORAI2_uc011kks.1_Intron	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator	10						integral to membrane	protein binding			ovary(1)|kidney(1)	2						CGTGCCTATCGACCCCTCTGC	0.602000													23	61					0	0	0.00127121	0	0
Unknown	0	broad.mit.edu	37	7	124116514	124116514	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:124116514G>A	uc011kod.1	+	1	90	c.90G>A	c.(88-90)GGG>GGA	p.G30G		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		GGAGAAAAGGGCTAAGTGTCC	0.512000													16	50					0	0	0.000308642	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				23	44					0	0	0.000878237	0	0
OR9A4	130075	broad.mit.edu	37	7	141618751	141618751	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:141618751C>T	uc003vwu.1	+	1	76	c.76C>T	c.(76-78)CTT>TTT	p.L26F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	26	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ACATCATATCCTTTTTGCTAT	0.393000													28	151					0	0	0.00178596	0	0
MGAM	8972	broad.mit.edu	37	7	141759379	141759379	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:141759379G>A	uc003vwy.2	+	32	3981	c.3927G>A	c.(3925-3927)GGG>GGA	p.G1309G		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1309	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGGCTGATGGGATGCGGGTCA	0.507000													33	47					0	0	0.000491102	0	0
PRSS1	5644	broad.mit.edu	37	7	142457353	142457353	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:142457353C>T	uc003wak.2	+	1	35	c.18C>T	c.(16-18)ATC>ATT	p.I6I	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|PRSS1_uc011ksm.1_Silent_p.I6I|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	6					digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CACTCCTGATCCTTACCTTTG	0.562000									Hereditary_Pancreatitis				24	47					0	0	0.00127121	0	0
OR2A2	442361	broad.mit.edu	37	7	143807482	143807482	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:143807482G>A	uc011ktz.1	+	1	807	c.807G>A	c.(805-807)CAG>CAA	p.Q269Q		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					GAGAGGAGCAGGAGAAAATGC	0.517000													39	88					0	0	0.000781405	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439877	150439877	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:150439877C>T	uc003whr.1	+	3	1002	c.650C>T	c.(649-651)TCC>TTC	p.S217F	GIMAP5_uc010lpu.2_Missense_Mutation_p.S75F	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	217	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGAGAGGGCTCCTTCCACAGC	0.592000													23	43					0	0	0.000295444	0	0
KCNV2	169522	broad.mit.edu	37	9	2718332	2718332	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:2718332G>A	uc003zho.1	+	1	807	c.593G>A	c.(592-594)TGC>TAC	p.C198Y		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	198	Extracellular (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		ACGCCACGCTGCTGCCGCATC	0.692000													5	3					0	0	0.000602214	0	0
SMU1	55234	broad.mit.edu	37	9	33062073	33062073	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:33062073G>A	uc003zsf.1	-	5	712	c.604C>T	c.(604-606)CCT>TCT	p.P202S	SMU1_uc010mjo.1_Missense_Mutation_p.P202S|SMU1_uc010mjp.1_Missense_Mutation_p.P202S|SMU1_uc011lnu.1_Missense_Mutation_p.P41S	NM_018225	NP_060695	Q2TAY7	SMU1_HUMAN	smu-1 suppressor of mec-8 and unc-52 homolog	202						cytoplasm|nucleus				ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0227)	GBM - Glioblastoma multiforme(74;0.11)		AGTTGTGTAGGAAACTTTTCT	0.323000													12	14					0	0	0.000219431	0	0
GBA2	57704	broad.mit.edu	37	9	35738791	35738791	+	Silent	SNP	C	G	G			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:35738791C>G	uc003zxw.2	-	12	2429	c.1905G>C	c.(1903-1905)ACG>ACC	p.T635T	GBA2_uc003zxx.1_5'Flank|GBA2_uc011lpb.1_Silent_p.T635T|GBA2_uc011lpc.1_Silent_p.T635T|GBA2_uc011lpd.1_Silent_p.T641T|GBA2_uc003zxy.1_Silent_p.T348T	NM_020944	NP_065995	Q9HCG7	GBA2_HUMAN	bile acid beta-glucosidase	635	Extracellular (Potential).				bile acid metabolic process|glucosylceramide catabolic process|O-glycoside catabolic process	integral to membrane|microsome|plasma membrane|smooth endoplasmic reticulum	beta-glucosidase activity|glucosylceramidase activity			ovary(3)|skin(1)	4	all_epithelial(49;0.167)		Lung(28;0.00416)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTTGATCACCCGTGAGGTAAT	0.498000													3	38					0	0	0.00024832	0	0
HINT2	84681	broad.mit.edu	37	9	35813656	35813656	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:35813656G>A	uc003zyh.2	-	2	273	c.207C>T	c.(205-207)CTC>CTT	p.L69L	SPAG8_uc003zye.2_5'Flank|SPAG8_uc003zyf.2_5'Flank|SPAG8_uc003zyg.2_5'Flank|HINT2_uc003zyi.2_Missense_Mutation_p.S34F	NM_032593	NP_115982	Q9BX68	HINT2_HUMAN	PKCI-1-related HIT protein precursor	69	HIT.				apoptosis|steroid biosynthetic process	mitochondrion	hydrolase activity				0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			GGTCCTCATAGAGAATGTCAG	0.562000											OREG0019179	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	11					0	0	0.000422831	0	0
TRPM3	80036	broad.mit.edu	37	9	73151678	73151678	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:73151678C>T	uc004aid.2	-	25	4559	c.4315G>A	c.(4315-4317)GCC>ACC	p.A1439T	TRPM3_uc004ahu.2_Missense_Mutation_p.A1281T|TRPM3_uc004ahv.2_Missense_Mutation_p.A1241T|TRPM3_uc004ahw.2_Missense_Mutation_p.A1311T|TRPM3_uc004ahx.2_Missense_Mutation_p.A1298T|TRPM3_uc004ahy.2_Missense_Mutation_p.A1301T|TRPM3_uc004ahz.2_Missense_Mutation_p.A1288T|TRPM3_uc004aia.2_Missense_Mutation_p.A1286T|TRPM3_uc004aib.2_Missense_Mutation_p.A1276T|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1464	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CTTGAAGGGGCTGTGGAAGGT	0.507000													17	17					0	0	0.00074312	0	0
GABBR2	9568	broad.mit.edu	37	9	101133789	101133789	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr9:101133789C>T	uc004ays.2	-	12	1883	c.1727G>A	c.(1726-1728)TGG>TAG	p.W576*		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	576	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GTGGACTCTCCAGGTCTTTGC	0.433000													8	8					0	0	0.000673444	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27999112	27999112	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chrX:27999112C>T	uc004dbx.1	-	1	455	c.340G>A	c.(340-342)GAA>AAA	p.E114K		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	114	Glu-rich.									ovary(3)|skin(1)	4						GGCTGTtcttcctcctcccct	0.393000													11	10					0	0	0.000673444	0	0
TFE3	7030	broad.mit.edu	37	X	48887842	48887843	+	Silent	DNP	GG	AA	AA			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chrX:48887842_48887843GG>AA	uc004dmb.3	-	10	1792_1793	c.1554_1555CC>TT	c.(1552-1557)CACCTG>CATTTG	p.518_519HL>HL	TFE3_uc004dmc.3_Silent_p.413_414HL>HL	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	518_519					humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						TCCAGCCCCAGGTGGAAGGGGT	0.673000			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								16	20					0	0	6.4e-05	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963798	73963798	+	Silent	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chrX:73963798C>T	uc004eby.2	-	3	1211	c.594G>A	c.(592-594)CAG>CAA	p.Q198Q		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	198					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTGAGAGCAGCTGCTCTCCAT	0.458000													12	14					0	0	0.000978159	0	0
DOCK11	139818	broad.mit.edu	37	X	117727237	117727237	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chrX:117727237C>T	uc004eqp.2	+	20	2263	c.2200C>T	c.(2200-2202)CAT>TAT	p.H734Y	DOCK11_uc004eqq.2_Missense_Mutation_p.H500Y	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	734	DHR-1.				blood coagulation	cytosol	GTP binding			ovary(3)	3						CACTTTTTATCATGTAAGTTG	0.333000													28	18					0	0	0.000339439	0	0
FLNA	2316	broad.mit.edu	37	X	153594957	153594957	+	Silent	SNP	G	A	A			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chrX:153594957G>A	uc004fkk.2	-	7	1287	c.1038C>T	c.(1036-1038)TAC>TAT	p.Y346Y	FLNA_uc010nuu.1_Silent_p.Y346Y	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	346	Filamin 1.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCTCGGGGACGTACCAGACGG	0.622000													15	20					0	0	0.000422831	0	0
TM7SF3	51768	broad.mit.edu	37	12	27167053	27167053	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr12:27167053delG	uc010sjl.1	-	1	287	c.49delC	c.(49-51)CGGfs	p.R17fs		NM_016551	NP_057635	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3 precursor	17						integral to membrane|plasma membrane				upper_aerodigestive_tract(2)	2	Colorectal(261;0.0847)					CCAGCCACCCGGTGTTCGGAT	0.662													2	4	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													8	166	---	---	---	---					
GALR3	8484	broad.mit.edu	37	22	38221118	38221118	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr22:38221118delC	uc003aub.1	+	2	773	c.748delC	c.(748-750)CCGfs	p.P250fs		NM_003614	NP_003605	O60755	GALR3_HUMAN	galanin receptor 3	250	Helical; Name=6; (Potential).				feeding behavior|learning or memory|negative regulation of adenylate cyclase activity	integral to membrane|plasma membrane	galanin receptor activity				0	Melanoma(58;0.045)					CTGCTGGGGTCCGCACCACGC	0.488													2	4	---	---	---	---					
GPC2	221914	broad.mit.edu	37	7	99769030	99769030	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19Q-06A-11D-A197-08	TCGA-ER-A19Q-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	60906421-eead-4324-8f52-47d391bd4894	25ed7029-c9d0-4b0d-8df9-064b77d89bce	g.chr7:99769030delG	uc003utv.2	-	9	1508	c.1340delC	c.(1339-1341)CCGfs	p.P447fs	GAL3ST4_uc003utu.2_5'Flank|GAL3ST4_uc010lgq.2_5'Flank|GPC2_uc010lgr.2_RNA	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	447						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGCTCGGCCGGGGAGCCCCC	0.582													2	4	---	---	---	---					
