Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AJAP1	55966	broad.mit.edu	37	1	4832501	4832501	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:4832501G>A	uc001alm.1	+	4	1460	c.1079G>A	c.(1078-1080)TGC>TAC	p.C360Y	AJAP1_uc001aln.2_Missense_Mutation_p.C360Y	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	360	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		TCTCACGAGTGCGTCAGGGCA	0.592000													6	6					0	0	0.00116845	0	0
CA6	765	broad.mit.edu	37	1	9009336	9009336	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:9009336G>A	uc001apm.2	+	2	118	c.94G>A	c.(94-96)GAA>AAA	p.E32K	CA6_uc009vmn.2_Intron	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	32					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		GGCACTGGACGAAGCGCACTG	0.627000													6	10					0	0	0.000157383	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921271	12921271	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:12921271C>T	uc001aum.1	+	4	1149	c.1062C>T	c.(1060-1062)CTC>CTT	p.L354L		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	354	LRR 2.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCGAGACCCTCGTGTTAGAGG	0.537000													31	62					0	0	0.00178596	0	0
DPH2	1802	broad.mit.edu	37	1	44437122	44437122	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:44437122C>T	uc001ckz.2	+	4	743	c.548C>T	c.(547-549)CCC>CTC	p.P183L	DPH2_uc001cla.2_Intron|DPH2_uc010okk.1_Missense_Mutation_p.P48L|DPH2_uc001clb.2_Missense_Mutation_p.P107L	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	183					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				CCAGCTTTTCCCCAACCAGTG	0.607000													4	13					0	0	0.00024832	0	0
CYP4B1	1580	broad.mit.edu	37	1	47282763	47282763	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:47282763G>A	uc001cqm.3	+	9	1198	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	CYP4B1_uc001cqn.3_Missense_Mutation_p.E373K|CYP4B1_uc009vym.2_Missense_Mutation_p.E358K|CYP4B1_uc010omk.1_Missense_Mutation_p.E209K	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	372					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GTGCATCAAGGAGAGCTTCCG	0.552000													11	45					0	0	0.00136819	0	0
BRDT	676	broad.mit.edu	37	1	92446461	92446461	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:92446461G>A	uc001dok.3	+	10	1825	c.1476G>A	c.(1474-1476)AGG>AGA	p.R492R	BRDT_uc001dol.3_Silent_p.R492R|BRDT_uc010osz.1_Silent_p.R496R|BRDT_uc009wdf.2_Silent_p.R419R|BRDT_uc010ota.1_Silent_p.R446R|BRDT_uc010otb.1_Silent_p.R446R|BRDT_uc001dom.3_Silent_p.R492R	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	492					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		CAAAGAAAAGGAAACAACAGT	0.308000													8	27					0	0	0.000442599	0	0
VAV3	10451	broad.mit.edu	37	1	108303444	108303444	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:108303444G>A	uc001dvk.1	-	10	1033	c.979C>T	c.(979-981)CCT>TCT	p.P327S	VAV3_uc010ouw.1_Missense_Mutation_p.P327S|VAV3_uc001dvl.1_Missense_Mutation_p.P151S|VAV3_uc010oux.1_Missense_Mutation_p.P327S	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	327	DH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CGTTGCATAGGAACCACAAGC	0.294000													4	25					0	0	0.000602214	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			274	79					0	0	0.000781405	0	0
SYCP1	6847	broad.mit.edu	37	1	115527431	115527431	+	Missense_Mutation	SNP	G	A	A	rs147186440		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:115527431G>A	uc001efr.2	+	30	2854	c.2645G>A	c.(2644-2646)AGA>AAA	p.R882K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.R882K|SYCP1_uc009wgw.2_Missense_Mutation_p.R857K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	882	Nuclear localization signal (Potential).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAAAAAAGAGAAAAATGGCC	0.244000													14	277					0	0	0.00074312	0	0
PMVK	10654	broad.mit.edu	37	1	154901531	154901531	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:154901531T>G	uc001ffq.2	-	3	604	c.281A>C	c.(280-282)AAG>ACG	p.K94T		NM_006556	NP_006547	Q15126	PMVK_HUMAN	phosphomevalonate kinase	94					cholesterol biosynthetic process|protein phosphorylation	cytosol|peroxisome	ATP binding|phosphomevalonate kinase activity|protein binding				0	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.142)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CTCCACAATCTTCCTGCAAAA	0.532000													20	57					0	0	0.00152264	0	0
FCRL4	83417	broad.mit.edu	37	1	157556060	157556060	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:157556060C>T	uc001fqw.2	-	6	1169	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	345	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GCAGGGAGCTCCAGCTCTGCT	0.577000													10	47					0	0	0.000673444	0	0
FCRL1	115350	broad.mit.edu	37	1	157771259	157771259	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:157771259C>T	uc001frg.2	-	6	1108	c.995G>A	c.(994-996)AGA>AAA	p.R332K	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.R332K|FCRL1_uc001fri.2_Intron|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	332	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			ACCTATTTTTCTTTTGAGGCC	0.428000													7	23					0	0	0.000157383	0	0
CD1A	909	broad.mit.edu	37	1	158226832	158226833	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:158226832_158226833CC>TT	uc001frt.2	+	4	1394_1395	c.861_862CC>TT	c.(859-864)GGCCAG>GGTTAG	p.Q288*		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	288	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GTCTAGAGGGCCAGGACATCGT	0.584000													6	33					0	0	6.4e-05	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576270	158576270	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:158576270C>T	uc010pio.1	+	1	42	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					ATTTTGTCTTCCTGGGCTTCT	0.473000													13	52					0	0	0.00185496	0	0
MNDA	4332	broad.mit.edu	37	1	158815426	158815426	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:158815426C>T	uc001fsz.1	+	5	820	c.620C>T	c.(619-621)CCC>CTC	p.P207L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	207	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AGAAATGTTCCCCAAAACGAC	0.448000													7	21					0	0	0.00198382	0	0
FCRL6	343413	broad.mit.edu	37	1	159779934	159779934	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:159779934C>T	uc001fud.3	+	6	979	c.937C>T	c.(937-939)CCT>TCT	p.P313S	FCRL6_uc001fuc.2_Missense_Mutation_p.P320S|FCRL6_uc009wsz.1_Missense_Mutation_p.P218S|FCRL6_uc009wta.2_Missense_Mutation_p.P313S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	313	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					TCCTTGGCTTCCTGCGAGCCT	0.517000													19	77					0	0	0.000958276	0	0
IGSF9	57549	broad.mit.edu	37	1	159907562	159907562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:159907562C>T	uc001fur.2	-	4	512	c.314G>A	c.(313-315)TGG>TAG	p.W105*	IGSF9_uc001fuq.2_Nonsense_Mutation_p.W105*	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	105	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCACTCGTACCAGCCCTGGTC	0.592000													7	32					0	0	0.00198382	0	0
SLAMF1	6504	broad.mit.edu	37	1	160607290	160607290	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:160607290G>A	uc001fwl.3	-	2	452	c.106C>T	c.(106-108)CTC>TTC	p.L36F	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Missense_Mutation_p.L36F	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	36	Extracellular (Potential).				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			AACTGCCGGAGAATCTTTGGG	0.473000													6	14					0	0	0.00198382	0	0
SELE	6401	broad.mit.edu	37	1	169697037	169697037	+	Silent	SNP	C	T	T	rs144324234	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:169697037C>T	uc001ggm.3	-	9	1468	c.1311G>A	c.(1309-1311)CCG>CCA	p.P437P	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	437	Extracellular (Potential).|Sushi 5.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CCAAACCCTTCGGGGGCTGGT	0.488000													12	45					0	0	0.000978159	0	0
FASLG	356	broad.mit.edu	37	1	172634797	172634797	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:172634797G>A	uc001gis.2	+	4	644	c.487G>A	c.(487-489)GAA>AAA	p.E163K	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	163	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TCTGGAATGGGAAGACACCTA	0.408000													13	27					0	0	0.00185496	0	0
PAPPA2	60676	broad.mit.edu	37	1	176740149	176740149	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:176740149C>T	uc001gkz.2	+	17	5712	c.4548C>T	c.(4546-4548)CTC>CTT	p.L1516L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1516	Sushi 2.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TCTGGTCTCTCCCTGAAGTCT	0.522000													7	43					0	0	0.000274275	0	0
FAM5B	57795	broad.mit.edu	37	1	177250323	177250324	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:177250323_177250324CC>TT	uc001glf.2	+	8	2323_2324	c.2011_2012CC>TT	c.(2011-2013)CCC>TTC	p.P671F	FAM5B_uc001glg.2_Missense_Mutation_p.P566F	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	671						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GATGACTGATCCCTCTAAGAAT	0.460000													14	63					0	0	6.4e-05	0	0
LAMC2	3918	broad.mit.edu	37	1	183196718	183196718	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:183196718G>A	uc001gqa.2	+	10	1668	c.1354G>A	c.(1354-1356)GAT>AAT	p.D452N	LAMC2_uc001gpz.3_Missense_Mutation_p.D452N|LAMC2_uc010poa.1_Missense_Mutation_p.D152N	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	452	Laminin EGF-like 5.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						TTTCTACAACGATCCGCACGA	0.557000													23	74					0	0	0.000586117	0	0
PRG4	10216	broad.mit.edu	37	1	186276018	186276018	+	Silent	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:186276018A>C	uc001gru.3	+	7	1218	c.1167A>C	c.(1165-1167)GCA>GCC	p.A389A	PRG4_uc001grt.3_Silent_p.A348A|PRG4_uc009wyl.2_Silent_p.A296A|PRG4_uc009wym.2_Silent_p.A255A|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	389	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|6; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCAAGTCTGCACCCACCACTC	0.637000													7	33					0	0	0.000978159	0	0
CFHR4	10877	broad.mit.edu	37	1	196887426	196887426	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:196887426G>A	uc001gto.2	+	6	955	c.886G>A	c.(886-888)GGG>AGG	p.G296R	CFHR4_uc009wyy.2_Missense_Mutation_p.G542R|CFHR4_uc001gtp.2_Missense_Mutation_p.G543R	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	296	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TGCAAAAACAGGGGATACCAT	0.318000													10	56					0	0	0.000978159	0	0
F13B	2165	broad.mit.edu	37	1	197029651	197029651	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:197029651C>T	uc001gtt.1	-	5	694	c.650G>A	c.(649-651)AGA>AAA	p.R217K		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	217	Sushi 4.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTCAATTAATCTTAAAGAAGA	0.274000													5	41					0	0	0.00116845	0	0
ASPM	259266	broad.mit.edu	37	1	197070021	197070021	+	Missense_Mutation	SNP	A	G	G	rs111685217		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:197070021A>G	uc001gtu.2	-	18	8617	c.8360T>C	c.(8359-8361)GTT>GCT	p.V2787A	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.V635A	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2787					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTCACTTTGAACAGCTTCATA	0.393000													23	82					0	0	0.00047179	0	0
CRB1	23418	broad.mit.edu	37	1	197398659	197398659	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:197398659G>A	uc001gtz.2	+	8	2892	c.2757G>A	c.(2755-2757)GGG>GGA	p.G919G	CRB1_uc010poz.1_Silent_p.G895G|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.G807G|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Silent_p.G400G|CRB1_uc001gub.1_Silent_p.G568G	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	919	Extracellular (Potential).|EGF-like 13.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCACAAGTGGGAAAGCCTGTG	0.532000													11	65					0	0	0.000978159	0	0
CACNA1S	779	broad.mit.edu	37	1	201052414	201052414	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:201052414C>T	uc001gvv.2	-	10	1496	c.1269G>A	c.(1267-1269)TGG>TGA	p.W423*		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	423	II.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CATGGCACTTCCAGCGAAAGA	0.557000													16	55					0	0	0.000422831	0	0
IGFN1	91156	broad.mit.edu	37	1	201184794	201184794	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:201184794G>A	uc001gwc.2	+	4	1375	c.603G>A	c.(601-603)AAG>AAA	p.K201K	IGFN1_uc001gwb.2_Intron	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCTGGAGGAAGGACGGGGCTG	0.642000													4	18					0	0	0.00024832	0	0
RNPEP	6051	broad.mit.edu	37	1	201970888	201970888	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:201970888C>T	uc001gxd.2	+	8	1448	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I	RNPEP_uc001gxe.2_Silent_p.I174I|RNPEP_uc001gxf.2_Silent_p.I342I	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	473					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		GAGTGGATATCATTCCAGGTA	0.423000													15	69					0	0	0.00244969	0	0
PPFIA4	8497	broad.mit.edu	37	1	203024755	203024755	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:203024755C>T	uc001gyz.2	+	3	1100	c.507C>T	c.(505-507)TCC>TCT	p.S169S	PPFIA4_uc009xaj.2_Silent_p.S800S|PPFIA4_uc010pqf.1_Silent_p.S382S|PPFIA4_uc001gza.2_Silent_p.S169S|PPFIA4_uc001gzb.1_5'Flank	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	169					cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						AGCTCACCTCCCGCAGTGCTG	0.682000													5	36					0	0	0.000602214	0	0
DSTYK	25778	broad.mit.edu	37	1	205138706	205138706	+	Silent	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:205138706A>G	uc001hbw.2	-	3	973	c.909T>C	c.(907-909)CTT>CTC	p.L303L	DSTYK_uc001hbx.2_Silent_p.L303L|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	303						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						GCTGGCGATAAAGCGGTGATC	0.488000													4	29					0	0	0.000602214	0	0
LGTN	1939	broad.mit.edu	37	1	206770521	206770521	+	Silent	SNP	T	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:206770521T>C	uc001heh.2	-	12	1526	c.1317A>G	c.(1315-1317)CTA>CTG	p.L439L	LGTN_uc009xbw.2_Silent_p.L315L	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	439					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			TGCAGTCACATAGGATGGGAT	0.438000													7	27					0	0	0.000274275	0	0
CR2	1380	broad.mit.edu	37	1	207648331	207648331	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:207648331G>A	uc001hfw.2	+	13	2403	c.2309G>A	c.(2308-2310)GGA>GAA	p.G770E	CR2_uc001hfv.2_Missense_Mutation_p.G829E|CR2_uc009xch.2_Missense_Mutation_p.G770E	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	770	Sushi 12.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						AAAGGACATGGATCTTGGAGC	0.438000													7	73					0	0	0.00198382	0	0
KCNH1	3756	broad.mit.edu	37	1	210857430	210857430	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:210857430C>T	uc001hib.2	-	11	2333	c.2163G>A	c.(2161-2163)ATG>ATA	p.M721I	KCNH1_uc001hic.2_Missense_Mutation_p.M694I	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	721	Cytoplasmic (Potential).|Calmodulin-binding.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TCTTTCGTTTCATGCGTTCTT	0.562000													10	36					0	0	0.00185496	0	0
KCTD3	51133	broad.mit.edu	37	1	215781439	215781439	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:215781439C>T	uc001hks.2	+	14	1684	c.1390C>T	c.(1390-1392)CCT>TCT	p.P464S	KCTD3_uc001hkt.2_Missense_Mutation_p.P464S|KCTD3_uc010pub.1_Missense_Mutation_p.P362S|KCTD3_uc009xdn.2_Intron	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	464						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		AGGTTCTACTCCTTTAGCGTC	0.438000													12	51					0	0	0.00136819	0	0
MIA3	375056	broad.mit.edu	37	1	222803275	222803275	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:222803275C>T	uc001hnl.2	+	4	2722	c.2713C>T	c.(2713-2715)CAC>TAC	p.H905Y	MIA3_uc009xea.1_Missense_Mutation_p.H741Y	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	905	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TGACTCGTTCCACTGGACTCC	0.483000													38	229					0	0	0.00128727	0	0
TLR5	7100	broad.mit.edu	37	1	223285504	223285504	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:223285504C>T	uc001hnv.1	-	4	1316	c.870G>A	c.(868-870)GTG>GTA	p.V290V	TLR5_uc001hnw.1_Silent_p.V290V	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	290	Extracellular (Potential).|LRR 5.				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CCAGGTGTCTCACTGAACTTC	0.478000													8	50					0	0	0.000274275	0	0
DNAH14	127602	broad.mit.edu	37	1	225155175	225155175	+	Silent	SNP	C	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:225155175C>A	uc001how.2	+	6	756	c.541C>A	c.(541-543)CGG>AGG	p.R181R	DNAH14_uc001hou.3_Silent_p.R181R|DNAH14_uc001hot.3_Silent_p.R181R|DNAH14_uc001hov.3_Silent_p.R181R	NM_001373	NP_001364	Q0VDD8	DYH14_HUMAN	dynein, axonemal, heavy polypeptide 14 isoform	308					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1						TTGCCTTCCTCGGAAAAGTCC	0.274000													46	91					2.64514e-33	1.12543e-32	0.000781405	1	0
LBR	3930	broad.mit.edu	37	1	225591097	225591097	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:225591097G>A	uc001hoy.2	-	14	1899	c.1756C>T	c.(1756-1758)CGT>TGT	p.R586C	LBR_uc001hoz.2_Missense_Mutation_p.R586C	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	586					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		TACTCGTCACGAGCTTCTCGG	0.403000													15	40					0	0	0.000308642	0	0
OBSCN	84033	broad.mit.edu	37	1	228400271	228400271	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:228400271G>C	uc009xez.1	+	2	831	c.787G>C	c.(787-789)GGC>CGC	p.G263R	OBSCN_uc001hsn.2_Missense_Mutation_p.G263R|uc001hsm.1_RNA	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	263	Ig-like 3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTACGTGACCGGCGAGCCCAA	0.706000													4	51					0	0	0.000602214	0	0
PCNXL2	80003	broad.mit.edu	37	1	233152864	233152864	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:233152864G>A	uc001hvl.2	-	27	4877	c.4642C>T	c.(4642-4644)CTC>TTC	p.L1548F	PCNXL2_uc001hvk.1_Missense_Mutation_p.L200F|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1548						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATCCAGGAGAGGAGTTTGGGA	0.368000													20	75					0	0	0.00121646	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296076	233296076	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:233296076G>A	uc001hvl.2	-	19	3705	c.3470C>T	c.(3469-3471)TCA>TTA	p.S1157L	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1157						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AATGGGGTGTGAAATCCACAT	0.443000													10	45					0	0	0.00136819	0	0
RYR2	6262	broad.mit.edu	37	1	237756850	237756850	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:237756850C>T	uc001hyl.1	+	33	4470	c.4350C>T	c.(4348-4350)TTC>TTT	p.F1450F		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1450	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATCAGATTTCCATCAGTATG	0.408000													8	46					0	0	0.000274275	0	0
FMN2	56776	broad.mit.edu	37	1	240370352	240370352	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:240370352C>T	uc010pyd.1	+	5	2465	c.2240C>T	c.(2239-2241)TCC>TTC	p.S747F	FMN2_uc010pye.1_Missense_Mutation_p.S751F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	747					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ATACAGACTTCCCCCACGGAA	0.572000													6	12					0	0	0.00198382	0	0
RGS7	6000	broad.mit.edu	37	1	240966273	240966273	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:240966273C>T	uc001hyv.2	-	16	1620	c.1290G>A	c.(1288-1290)ATG>ATA	p.M430I	RGS7_uc010pyh.1_Missense_Mutation_p.M404I|RGS7_uc010pyj.1_Missense_Mutation_p.M346I|RGS7_uc001hyu.2_Missense_Mutation_p.M430I|RGS7_uc009xgn.1_Missense_Mutation_p.M377I|RGS7_uc001hyw.2_Missense_Mutation_p.M430I|RGS7_uc001hyt.2_Missense_Mutation_p.M262I	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	430	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			AATCACTTTTCATCAGTTTGT	0.348000													16	92					0	0	0.000958276	0	0
CHML	1122	broad.mit.edu	37	1	241799033	241799033	+	Silent	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:241799033A>G	uc001hzd.2	-	1	200	c.36T>C	c.(34-36)GTT>GTC	p.V12V	OPN3_uc001hza.2_Intron|OPN3_uc001hzb.2_Intron|OPN3_uc001hzc.2_Intron	NM_001821	NP_001812	P26374	RAE2_HUMAN	choroideremia-like Rab escort protein 2	12					intracellular protein transport|visual perception	Rab-protein geranylgeranyltransferase complex	GTPase activator activity|Rab geranylgeranyltransferase activity			ovary(4)|skin(2)	6	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			TCCCTATTATAACCACATCAA	0.438000													11	60					0	0	0.000673444	0	0
OR2W3	343171	broad.mit.edu	37	1	248059274	248059274	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:248059274C>T	uc001idp.1	+	3	655	c.386C>T	c.(385-387)CCC>CTC	p.P129L	OR2W3_uc010pzb.1_Missense_Mutation_p.P129L	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ATCTGCAAGCCCCTGCACTAC	0.612000													13	34					0	0	0.00185496	0	0
OR2M7	391196	broad.mit.edu	37	1	248487835	248487835	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:248487835G>A	uc010pzk.1	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCAGGAGGAGGAAGTCAGAGT	0.458000													29	131					0	0	0.00283554	0	0
TUBAL3	79861	broad.mit.edu	37	10	5442975	5442975	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:5442975C>T	uc001ihy.2	-	2	119	c.79G>A	c.(79-81)GAA>AAA	p.E27K	TUBAL3_uc001ihz.2_Intron	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	27					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						ATTCCATGTTCCAGGCAATAG	0.473000													22	30					0	0	0.00152264	0	0
ITIH2	3698	broad.mit.edu	37	10	7751049	7751049	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:7751049C>T	uc001ijs.2	+	4	419	c.257C>T	c.(256-258)GCC>GTC	p.A86V		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide	86	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						TCTCGGATGGCCACCACCATG	0.428000													11	31					0	0	0.000673444	0	0
ITGA8	8516	broad.mit.edu	37	10	15639291	15639291	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:15639291C>T	uc001ioc.1	-	21	2126	c.2126G>A	c.(2125-2127)CGA>CAA	p.R709Q	ITGA8_uc010qcb.1_Missense_Mutation_p.R694Q	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	709	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCTCAGTGGTCGAAATCCCTA	0.502000													10	28					0	0	0.000978159	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702594	27702594	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:27702594G>T	uc001itu.2	-	1	704	c.586C>A	c.(586-588)CGC>AGC	p.R196S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	196					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCGGAGAAGCGGTAGGAGTCG	0.607000													5	44					0.00116845	0.00490204	0.00116845	1	0
PCDH15	65217	broad.mit.edu	37	10	55582378	55582378	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:55582378G>A	uc001jju.1	-	33	5503	c.5108C>T	c.(5107-5109)TCA>TTA	p.S1703L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.S1700L|PCDH15_uc010qhw.1_Missense_Mutation_p.S1663L|PCDH15_uc010qhx.1_Missense_Mutation_p.S1634L|PCDH15_uc010qhy.1_Missense_Mutation_p.S1710L|PCDH15_uc010qhz.1_Missense_Mutation_p.S1705L|PCDH15_uc010qia.1_Missense_Mutation_p.S1683L|PCDH15_uc010qib.1_Missense_Mutation_p.S1680L	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1703	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACAAGGCCTTGAAGGAGAAAG	0.383000										HNSCC(58;0.16)			4	16					0	0	0.000602214	0	0
CYP2C19	1557	broad.mit.edu	37	10	96602712	96602712	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr10:96602712C>A	uc010qnz.1	+	7	1080	c.1080C>A	c.(1078-1080)GAC>GAA	p.D360E	CYP2C19_uc010qny.1_Missense_Mutation_p.D338E	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	360					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	GATACATCGACCTCATCCCCA	0.537000													18	41					6.49762e-13	2.75805e-12	0.00074312	1	0
MUC6	4588	broad.mit.edu	37	11	1021237	1021237	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:1021237C>T	uc001lsw.2	-	27	3618	c.3567G>A	c.(3565-3567)GAG>GAA	p.E1189E		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1189					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACACCCCCTCCTCGTGGTCGA	0.627000													3	6					0	0	0.00024832	0	0
MUC2	4583	broad.mit.edu	37	11	1087492	1087492	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:1087492C>T	uc001lsx.1	+	24	3270	c.3243C>T	c.(3241-3243)TCC>TCT	p.S1081S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1081						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ACTCGTGCTCCTGTGACACGG	0.657000													6	19					0	0	0.00198382	0	0
STIM1	6786	broad.mit.edu	37	11	4080625	4080625	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:4080625C>T	uc001lyv.2	+	5	1180	c.612C>T	c.(610-612)CTC>CTT	p.L204L	STIM1_uc009yef.2_Silent_p.L204L|STIM1_uc009yeg.2_Silent_p.L31L	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	204	Extracellular (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		GGCCTCCTCTCTGTGAGTCTT	0.542000													4	11					0	0	0.00024832	0	0
OR52E2	119678	broad.mit.edu	37	11	5080816	5080816	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:5080816G>A	uc010qyw.1	-	1	42	c.42C>T	c.(40-42)TTC>TTT	p.F14F		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCAGCAACAGGAAGGAGGAGG	0.483000													9	26					0	0	0.000442599	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529751	5529751	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:5529751G>A	uc001may.1	-	2	1124	c.1038C>T	c.(1036-1038)CTC>CTT	p.L346L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	346										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTAATTGCTGGAGATAGTCAT	0.493000													19	39					0	0	0.000958276	0	0
OR52E6	390078	broad.mit.edu	37	11	5862438	5862438	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:5862438G>A	uc010qzq.1	-	1	690	c.690C>T	c.(688-690)CCC>CCT	p.P230P	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCCCAGGAGGGCAGGCAGA	0.433000													5	25					0	0	0.000602214	0	0
OR56A3	390083	broad.mit.edu	37	11	5969480	5969480	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:5969480G>A	uc010qzt.1	+	1	904	c.904G>A	c.(904-906)GAA>AAA	p.E302K		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGAACCCAAGAAATTAAGCA	0.413000													9	28					0	0	0.000274275	0	0
OR6A2	8590	broad.mit.edu	37	11	6816325	6816325	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:6816325G>A	uc001mes.1	-	1	815	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGGCCAGGATGAAATCTGTAA	0.493000													18	55					0	0	0.00121646	0	0
OR5P2	120065	broad.mit.edu	37	11	7817955	7817955	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:7817955G>A	uc001mfp.1	-	1	535	c.535C>T	c.(535-537)CCC>TCC	p.P179S		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCAAGTAAGGGAGCGAAATCA	0.403000													7	42					0	0	0.00198382	0	0
E2F8	79733	broad.mit.edu	37	11	19246901	19246901	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:19246901G>A	uc001mpm.2	-	12	2810	c.2288C>T	c.(2287-2289)CCA>CTA	p.P763L	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.P763L	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	763					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CTCTATTCTTGGAGACACAGG	0.532000													8	42					0	0	0.000274275	0	0
FOLH1	2346	broad.mit.edu	37	11	49179553	49179553	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:49179553C>T	uc001ngy.2	-	14	1744	c.1483G>A	c.(1483-1485)GAA>AAA	p.E495K	FOLH1_uc001ngz.2_Missense_Mutation_p.E495K|FOLH1_uc009yly.2_Missense_Mutation_p.E480K|FOLH1_uc009ylz.2_Missense_Mutation_p.E480K|FOLH1_uc009yma.2_Missense_Mutation_p.E187K	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	495	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	GTCCAACTTTCATAAAGAGAT	0.348000													12	50					0	0	0.00074312	0	0
OR4C12	283093	broad.mit.edu	37	11	50003708	50003708	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:50003708G>A	uc010ria.1	-	1	330	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCAGCAGGATGATCTCAGTAG	0.458000													31	82					0	0	0.00209593	0	0
OR4C12	283093	broad.mit.edu	37	11	50003858	50003858	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:50003858G>A	uc010ria.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GGTGGGTCAGGAAGAAGTACA	0.408000													6	40					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	11	55065456	55065456	+	RNA	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:55065456C>T	uc001nhl.1	-	1		c.253G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CTTTGTCTCTCTGTGCATCCC	0.473000													5	9					0	0	0.000602214	0	0
OR4S2	219431	broad.mit.edu	37	11	55418737	55418737	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:55418737C>T	uc001nhs.1	+	1	358	c.358C>T	c.(358-360)CGT>TGT	p.R120C		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R120C(1)		skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				GGCCTATGATCGTTATGTGGC	0.428000													29	33					0	0	0.00127121	0	0
OR8K3	219473	broad.mit.edu	37	11	56086125	56086125	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:56086125C>T	uc010rjf.1	+	1	343	c.343C>T	c.(343-345)CTC>TTC	p.L115F		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ACTTTTTATTCTCTCAGCCAT	0.388000													18	57					0	0	0.000566183	0	0
SLC43A1	8501	broad.mit.edu	37	11	57254631	57254631	+	Silent	SNP	G	A	A	rs142620907	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:57254631G>A	uc001nkk.2	-	14	1588	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	SLC43A1_uc001nkl.2_Silent_p.F490F	NM_003627	NP_003618	O75387	LAT3_HUMAN	solute carrier family 43, member 1	490	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to plasma membrane	neutral amino acid transmembrane transporter activity				0						GAAGCAAGGCGAACACAGCAC	0.612000													7	16					0	0	0.000274275	0	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438000													8	24					0	0	0.00121646	0	0
SLC22A25	387601	broad.mit.edu	37	11	62984908	62984908	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:62984908C>T	uc001nwr.1	-	4	708	c.708G>A	c.(706-708)TTG>TTA	p.L236L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_Intron|SLC22A25_uc001nwt.1_Silent_p.L236L	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	236	Helical; Name=5; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CACAAAGTGTCAATGTCAATG	0.433000													6	20					0	0	0.00116845	0	0
ATG2A	23130	broad.mit.edu	37	11	64676602	64676602	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:64676602G>A	uc001obx.2	-	16	2340	c.2225C>T	c.(2224-2226)CCC>CTC	p.P742L		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	742							protein binding			ovary(1)|central_nervous_system(1)	2						GCTGGACTGGGGGTTCACAGT	0.672000													11	19					0	0	0.00185496	0	0
NPAS4	266743	broad.mit.edu	37	11	66190353	66190353	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:66190353C>T	uc001ohx.1	+	4	815	c.639C>T	c.(637-639)TTC>TTT	p.F213F	NPAS4_uc010rpc.1_Missense_Mutation_p.S40F	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	213	PAS 2.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						CCTCGCTCTTCCTGGCCATGT	0.612000													9	22					0	0	0.000442599	0	0
DPP3	10072	broad.mit.edu	37	11	66258775	66258775	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:66258775G>C	uc001oig.1	+	7	781	c.719G>C	c.(718-720)CGG>CCG	p.R240P	DPP3_uc001oif.1_Missense_Mutation_p.R240P|DPP3_uc010rpe.1_Missense_Mutation_p.R229P	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	240					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						TATGAATTCCGGGGAAGCCCT	0.577000											OREG0021109	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	54					0	0	0.000308642	0	0
SYT12	91683	broad.mit.edu	37	11	66807659	66807659	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:66807659C>T	uc009yrl.2	+	4	836	c.606C>T	c.(604-606)ATC>ATT	p.I202I	SYT12_uc001oju.2_Silent_p.I202I	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	202	C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						ACGAGCAGATCGTGGGCATTT	0.672000													7	34					0	0	0.000274275	0	0
SHANK2	22941	broad.mit.edu	37	11	70331862	70331862	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:70331862G>A	uc001oqc.2	-	21	4614	c.4536C>T	c.(4534-4536)ACC>ACT	p.T1512T	SHANK2_uc010rqn.1_Silent_p.T924T|SHANK2_uc001opz.2_Silent_p.T917T|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1133					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGCTAGACACGGTGGAGATAG	0.577000													6	28					0	0	0.00116845	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558403	106558403	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:106558403G>A	uc001pjg.1	-	8	2461	c.2071C>T	c.(2071-2073)CCT>TCT	p.P691S	GUCY1A2_uc010rvo.1_Missense_Mutation_p.P712S|GUCY1A2_uc009yxn.1_Missense_Mutation_p.P722S	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	691					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CAGATCCCAGGAATTTCCTTT	0.423000													24	63					0	0	0.00047179	0	0
MLF2	8079	broad.mit.edu	37	12	6859416	6859416	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:6859416G>A	uc010sfi.1	-	6	389	c.326C>T	c.(325-327)TCC>TTC	p.S109F	MLF2_uc001qqp.2_Missense_Mutation_p.S109F|MLF2_uc009zey.1_Missense_Mutation_p.S109F	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	109					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						ATTGGAGTAGGAGATGACAGT	0.587000													10	63					0	0	0.000673444	0	0
ACSM4	341392	broad.mit.edu	37	12	7476100	7476100	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:7476100G>A	uc001qsx.1	+	9	1252	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	418					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						CAAAGAAGGGGAAATTGCCCT	0.269000													14	42					0	0	0.000308642	0	0
CD163	9332	broad.mit.edu	37	12	7639216	7639216	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:7639216C>T	uc001qsz.3	-	10	2465	c.2337G>A	c.(2335-2337)GGG>GGA	p.G779G	CD163_uc001qta.3_Silent_p.G779G|CD163_uc009zfw.2_Silent_p.G812G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	779	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCCAGATGGGCCCTGTTCCTT	0.547000													26	109					0	0	0.00209593	0	0
CD163	9332	broad.mit.edu	37	12	7640024	7640024	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:7640024C>T	uc001qsz.3	-	8	2109	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	CD163_uc001qta.3_Missense_Mutation_p.D661N|CD163_uc009zfw.2_Missense_Mutation_p.D694N	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	661	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ACAGGACAATCTCCCATGTGC	0.507000													14	40					0	0	0.00244969	0	0
LRP6	4040	broad.mit.edu	37	12	12279645	12279645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:12279645G>A	uc001rah.3	-	20	4434	c.4292C>T	c.(4291-4293)TCT>TTT	p.S1431F	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.S1386F	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1431	Cytoplasmic (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TCCTGACAAAGAACTTGGGTG	0.453000													44	166					0	0	0.000781405	0	0
LRP6	4040	broad.mit.edu	37	12	12397300	12397300	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:12397300T>G	uc001rah.3	-	2	487	c.345A>C	c.(343-345)GAA>GAC	p.E115D	LRP6_uc010shl.1_Missense_Mutation_p.E115D	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	115	Extracellular (Potential).|Beta-propeller 1.|LDL-receptor class B 2.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TCCGATTAGTTTCAGAATCTG	0.393000													75	207					0	0	0.000781405	0	0
GRIN2B	2904	broad.mit.edu	37	12	13828684	13828684	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:13828684C>T	uc001rbt.2	-	4	1299	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	374	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTTACCCTTTCCCACTTCCTC	0.418000													21	63					0	0	0.00188189	0	0
GUCY2C	2984	broad.mit.edu	37	12	14772205	14772205	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:14772205G>A	uc001rcd.2	-	24	2952	c.2815C>T	c.(2815-2817)CGT>TGT	p.R939C		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	939	Cytoplasmic (Potential).|Guanylate cyclase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AGACAATAACGAGGCATCTTG	0.473000													19	68					0	0	0.000586117	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18747486	18747486	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:18747486C>T	uc001rdt.2	+	29	4063	c.3947C>T	c.(3946-3948)TCA>TTA	p.S1316L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.S1357L|PIK3C2G_uc010sic.1_Missense_Mutation_p.S1135L	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1316					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GTTGAAGAATCATCACCTGTG	0.284000													6	47					0	0	0.00198382	0	0
PKP2	5318	broad.mit.edu	37	12	33031217	33031217	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:33031217G>A	uc001rlj.3	-	3	712	c.597C>T	c.(595-597)ATC>ATT	p.I199I	PKP2_uc001rlk.3_Silent_p.I199I|PKP2_uc010skj.1_Silent_p.I199I	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	199					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGACCCCCACGATCTCGGAAC	0.597000													6	22					0	0	0.00116845	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471774	47471774	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:47471774C>T	uc001rpm.2	-	3	1667	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.E338K|AMIGO2_uc001rpl.2_Missense_Mutation_p.E338K	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	338	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TAAAAGTTTTCCATCTCTTTA	0.438000													20	77					0	0	0.000958276	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471800	47471800	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:47471800C>T	uc001rpm.2	-	3	1641	c.986G>A	c.(985-987)AGA>AAA	p.R329K	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.R329K|AMIGO2_uc001rpl.2_Missense_Mutation_p.R329K	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	329	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CTCTAGCAGTCTGTTATCTGG	0.448000													26	87					0	0	0.000720815	0	0
CCNT1	904	broad.mit.edu	37	12	49087790	49087790	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:49087790G>C	uc001rse.1	-	9	1530	c.1207C>G	c.(1207-1209)CAG>GAG	p.Q403E	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.Q118E	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	403	Potential.				cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						TGCCTCTTCTGGGCAGCCAAT	0.438000													4	171					0	0	0.00116845	0	0
KRT75	9119	broad.mit.edu	37	12	52827609	52827609	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:52827609G>A	uc001saj.2	-	1	502	c.480C>T	c.(478-480)TTC>TTT	p.F160F		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	160	Coil 1A.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TGAAGGAGGCGAACTTATTGT	0.562000													12	46					0	0	0.00244969	0	0
KRT6A	3853	broad.mit.edu	37	12	52881593	52881593	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:52881593C>A	uc001sam.2	-	9	1815	c.1606G>T	c.(1606-1608)GGG>TGG	p.G536W		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	536	Tail.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		AGGCCACCCCCAATGGCTCTG	0.587000													5	43					0.00198382	0.0083035	0.00198382	1	0
KRT6A	3853	broad.mit.edu	37	12	52885512	52885512	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:52885512G>A	uc001sam.2	-	2	758	c.549C>T	c.(547-549)TTC>TTT	p.F183F		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	183	Coil 1A.|Rod.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCTGCTCCAGGAACCGCACCT	0.542000													6	16					0	0	0.00116845	0	0
KRT6A	3853	broad.mit.edu	37	12	52886863	52886863	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:52886863G>A	uc001sam.2	-	1	319	c.110C>T	c.(109-111)TCC>TTC	p.S37F		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	37	Head.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGGACACGGAGACGCTGCT	0.662000													15	39					0	0	0.000308642	0	0
KRT74	121391	broad.mit.edu	37	12	52967381	52967381	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:52967381A>G	uc001sap.1	-	1	229	c.181T>C	c.(181-183)TTC>CTC	p.F61L		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	61	Head.|Gly-rich.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GCCACATTGAAAGAAATACGC	0.612000													4	18					0	0	0.00024832	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54917697	54917697	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:54917697C>T	uc001sgc.3	+	20	2192	c.2113C>T	c.(2113-2115)CCT>TCT	p.P705S	NCKAP1L_uc010sox.1_Missense_Mutation_p.P247S|NCKAP1L_uc010soy.1_Missense_Mutation_p.P655S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	705					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TACTATCTTCCCTTCTGAGTA	0.443000													14	43					0	0	0.000308642	0	0
KIAA0748	9840	broad.mit.edu	37	12	55367269	55367269	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:55367269C>T	uc001sgn.3	-	3	308	c.198G>A	c.(196-198)CAG>CAA	p.Q66Q	KIAA0748_uc001sgl.3_5'UTR|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_5'UTR|KIAA0748_uc010spd.1_Silent_p.Q66Q|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	66										ovary(1)|central_nervous_system(1)	2						ACCCGCAATCCTGCAGCCAGT	0.468000													18	38					0	0	0.00152264	0	0
SHMT2	6472	broad.mit.edu	37	12	57627814	57627814	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:57627814C>T	uc001snf.1	+	11	1318	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	SHMT2_uc001sng.1_Silent_p.F332F|SHMT2_uc001snh.1_Silent_p.F275F|SHMT2_uc009zpk.1_Silent_p.F426F|SHMT2_uc001sni.1_Silent_p.F415F|SHMT2_uc010srg.1_Silent_p.F445F|SHMT2_uc001snj.1_Silent_p.F340F|SHMT2_uc010srh.1_Silent_p.F415F|SHMT2_uc001snk.1_Silent_p.F340F|SHMT2_uc010sri.1_Silent_p.F415F|SHMT2_uc001snl.2_Silent_p.F340F|SHMT2_uc010srj.1_Silent_p.F91F	NM_005412	NP_005403	P34897	GLYM_HUMAN	serine hydroxymethyltransferase 2	436						microtubule cytoskeleton|mitochondrial nucleoid	glycine hydroxymethyltransferase activity|methyltransferase activity			ovary(1)|central_nervous_system(1)	2					Glycine(DB00145)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CTCGACAGTTCCGTGAGGATG	0.557000													21	34					0	0	0.00188189	0	0
LYZ	4069	broad.mit.edu	37	12	69746962	69746962	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:69746962G>A	uc001suw.2	+	4	465	c.410G>A	c.(409-411)AGA>AAA	p.R137K		NM_000239	NP_000230	P61626	LYSC_HUMAN	lysozyme precursor	137					cell wall macromolecule catabolic process|cytolysis|defense response to bacterium|inflammatory response	extracellular space	lysozyme activity|protein binding				0	all_epithelial(5;2.98e-35)|Lung NSC(4;9.93e-33)|all_lung(4;5.66e-31)|Breast(13;2.56e-06)|Esophageal squamous(21;0.187)		Epithelial(6;8.26e-19)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;9.68e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00503)|OV - Ovarian serous cystadenocarcinoma(12;0.00691)|LUSC - Lung squamous cell carcinoma(43;0.24)|Kidney(9;0.241)			TGTCAAAACAGAGATGTCCGT	0.378000													9	79					0	0	0.000673444	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85492217	85492217	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:85492217C>T	uc001tac.2	+	12	3083	c.2972C>T	c.(2971-2973)CCT>CTT	p.P991L	LRRIQ1_uc001tab.1_Missense_Mutation_p.P991L	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	991	LRR 5.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGTGATACACCTACCATTGTA	0.328000													11	32					0	0	0.000978159	0	0
PAH	5053	broad.mit.edu	37	12	103245469	103245469	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:103245469G>A	uc001tjq.1	-	9	1380	c.908C>T	c.(907-909)TCC>TTC	p.S303F		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	303			S -> P (in PKU; haplotype 5).		catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	CCTTACCTGGGAAAACTGGGC	0.493000													11	28					0	0	0.000978159	0	0
STAB2	55576	broad.mit.edu	37	12	104092978	104092978	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:104092978C>T	uc001tjw.2	+	34	3873	c.3687C>T	c.(3685-3687)TTC>TTT	p.F1229F		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1229	Extracellular (Potential).|FAS1 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCTCCTATTTCCTTAGCTTCT	0.473000													4	24					0	0	0.00024832	0	0
SSH1	54434	broad.mit.edu	37	12	109201429	109201429	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:109201429G>A	uc001tnm.2	-	8	798	c.711C>T	c.(709-711)TCC>TCT	p.S237S	SSH1_uc001tnl.2_5'Flank|SSH1_uc010sxg.1_Silent_p.S248S|SSH1_uc001tnn.3_Silent_p.S237S|SSH1_uc001tno.1_Silent_p.S141S	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	237					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						ATAGCGCGGGGGAGTCGGGCC	0.622000													16	45					0	0	0.00074312	0	0
ACACB	32	broad.mit.edu	37	12	109634839	109634839	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:109634839C>T	uc001tob.2	+	17	2627	c.2508C>T	c.(2506-2508)TTC>TTT	p.F836F	ACACB_uc001toc.2_Silent_p.F836F	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	836					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TGACCATGTTCGTTCTCATCA	0.587000													9	9					0	0	0.000673444	0	0
CUX2	23316	broad.mit.edu	37	12	111748436	111748436	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:111748436C>T	uc001tsa.1	+	15	2003	c.1850C>T	c.(1849-1851)TCG>TTG	p.S617L		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	617	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CAGTTCCTGTCGGATGAGCAG	0.637000													6	24					0	0	0.000157383	0	0
NOS1	4842	broad.mit.edu	37	12	117660592	117660592	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:117660592G>A	uc001twm.1	-	26	4589	c.3903C>T	c.(3901-3903)ACC>ACT	p.T1301T		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1301					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGGCCTGCAGGGTCTCTTCCC	0.577000													22	43					0	0	0.00278032	0	0
COX6A1	1337	broad.mit.edu	37	12	120875936	120875936	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:120875936G>A	uc001tyf.1	+	1	33	c.7G>A	c.(7-9)GTA>ATA	p.V3I		NM_004373	NP_004364	P12074	CX6A1_HUMAN	cytochrome c oxidase subunit VIa polypeptide 1	3					respiratory electron transport chain	mitochondrial respiratory chain complex IV	cytochrome-c oxidase activity				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAAAATGGCGGTAGTTGGTGT	0.612000													4	13					0	0	0.000602214	0	0
VPS33A	65082	broad.mit.edu	37	12	122716937	122716937	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:122716937G>A	uc001ucd.2	-	13	1760	c.1647C>T	c.(1645-1647)TTC>TTT	p.F549F	VPS33A_uc001ucc.2_RNA	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	549					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		CGCCCCCAAGGAAAAATATCA	0.398000													9	31					0	0	0.000274275	0	0
DNAH10	196385	broad.mit.edu	37	12	124285974	124285974	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:124285974C>T	uc001uft.3	+	15	2280	c.2255C>T	c.(2254-2256)TCA>TTA	p.S752L	DNAH10_uc010tav.1_Missense_Mutation_p.S294L|DNAH10_uc010taw.1_Missense_Mutation_p.S237L	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	752	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AACTGGAACTCACTAGGTAAC	0.378000													14	39					0	0	0.000308642	0	0
ZNF664	144348	broad.mit.edu	37	12	124496840	124496840	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr12:124496840G>A	uc001ufz.2	+	6	1979	c.149G>A	c.(148-150)TGG>TAG	p.W50*	ZNF664_uc001uga.2_Nonsense_Mutation_p.W50*|ZNF664_uc001ugb.2_Nonsense_Mutation_p.W50*	NM_152437	NP_689650	Q8N3J9	ZN664_HUMAN	zinc finger protein 664	50	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.000239)|OV - Ovarian serous cystadenocarcinoma(86;0.000247)|all cancers(50;0.00155)|BRCA - Breast invasive adenocarcinoma(302;0.249)		CATATTCATTGGAGAGACCAT	0.353000													8	81					0	0	0.000157383	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751321	19751321	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:19751321G>A	uc009zzj.2	-	4	851	c.802C>T	c.(802-804)CCC>TCC	p.P268S		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	268					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GTGGCCAGGGGGAAGTGGATG	0.617000													7	48					0	0	0.000274275	0	0
GJB6	10804	broad.mit.edu	37	13	20797525	20797525	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:20797525C>T	uc001umz.3	-	3	648	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	GJB6_uc001unc.3_Missense_Mutation_p.R32Q|GJB6_uc001una.3_Missense_Mutation_p.R32Q|GJB6_uc001und.3_Missense_Mutation_p.R32Q|GJB6_uc001unb.3_Missense_Mutation_p.R32Q	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	32	Helical; (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		GATCATGACTCGGAAAATAAA	0.532000													12	50					0	0	0.00185496	0	0
LNX2	222484	broad.mit.edu	37	13	28127488	28127488	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:28127488G>A	uc001url.3	-	8	1944	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	LNX2_uc001urm.1_Silent_p.S545S	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	545	PDZ 3.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		CAACAGCAGGGGACGCGGCAC	0.488000													11	54					0	0	0.00136819	0	0
FLT1	2321	broad.mit.edu	37	13	29004206	29004206	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:29004206G>A	uc001usb.3	-	8	1372	c.1087C>T	c.(1087-1089)CCC>TCC	p.P363S	FLT1_uc010aar.1_Missense_Mutation_p.P363S|FLT1_uc001usc.3_Missense_Mutation_p.P363S|FLT1_uc010tdp.1_Missense_Mutation_p.P363S	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	363	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TCCGGCGAGGGAAATGCCTTC	0.448000													21	59					0	0	0.00047179	0	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679314	37679314	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:37679314G>A	uc001uwm.1	-	1	488	c.80C>T	c.(79-81)TCC>TTC	p.S27F		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	27	ATP (By similarity).|Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		GTCTCCAAAGGAGCCAGACCC	0.542000													15	47					0	0	0.000308642	0	0
FREM2	341640	broad.mit.edu	37	13	39358926	39358926	+	Silent	SNP	C	T	T	rs146568641		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:39358926C>T	uc001uwv.2	+	6	6309	c.6000C>T	c.(5998-6000)ATC>ATT	p.I2000I	FREM2_uc001uww.2_Silent_p.I86I	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2000	Extracellular (Potential).|Calx-beta 3.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AAGTTACAATCGTTCCTGACA	0.438000													7	23					0	0	0.000274275	0	0
DACH1	1602	broad.mit.edu	37	13	72147103	72147103	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:72147103G>A	uc010thn.1	-	5	1591	c.1168C>T	c.(1168-1170)CCT>TCT	p.P390S	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	442					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGGCTGACAGGAATTAGAGGG	0.438000													10	28					0	0	0.000978159	0	0
IPO5	3843	broad.mit.edu	37	13	98637698	98637698	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:98637698C>T	uc001vnf.1	+	3	260	c.195C>T	c.(193-195)CTC>CTT	p.L65L	IPO5_uc001vne.2_Silent_p.L83L|IPO5_uc010tik.1_Silent_p.L65L|IPO5_uc010til.1_Silent_p.L5L	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	65	Importin N-terminal.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						CCGCCGTTCTCCTAAGACGTC	0.388000													23	71					0	0	0.000720815	0	0
ITGBL1	9358	broad.mit.edu	37	13	102359193	102359193	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:102359193C>T	uc001vpb.2	+	9	1439	c.1220C>T	c.(1219-1221)ACG>ATG	p.T407M	ITGBL1_uc010agb.2_Missense_Mutation_p.T358M|ITGBL1_uc001vpc.3_Missense_Mutation_p.T266M	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	407	VIII.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGTAACATGACGGAAGAACAA	0.517000													8	70					0	0	0.000274275	0	0
TNFSF13B	10673	broad.mit.edu	37	13	108955898	108955898	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:108955898C>T	uc001vqr.2	+	5	958	c.691C>T	c.(691-693)CGA>TGA	p.R231*	TNFSF13B_uc010agj.2_Nonsense_Mutation_p.R212*	NM_006573	NP_006564	Q9Y275	TN13B_HUMAN	tumor necrosis factor superfamily, member 13b	231	Extracellular (Potential).				cell proliferation|immune response|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity|tumor necrosis factor receptor binding				0	all_lung(23;0.000396)|all_neural(89;0.00256)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00902)|Lung SC(71;0.104)		all cancers(43;0.184)|BRCA - Breast invasive adenocarcinoma(86;0.19)			GACTTTGTTTCGATGTATTCA	0.383000													16	52					0	0	0.000566183	0	0
MYO16	23026	broad.mit.edu	37	13	109661278	109661278	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr13:109661278C>T	uc001vqt.1	+	22	2536	c.2410C>T	c.(2410-2412)CAC>TAC	p.H804Y	MYO16_uc010agk.1_Missense_Mutation_p.H826Y|MYO16_uc001vqu.1_Missense_Mutation_p.H604Y|MYO16_uc010tjh.1_Missense_Mutation_p.H316Y	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	804	Myosin head-like 1.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GAAGATGCACCACTATATCAA	0.348000													10	29					0	0	0.000673444	0	0
OR4K14	122740	broad.mit.edu	37	14	20483005	20483005	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:20483005C>T	uc010tky.1	-	1	348	c.348G>A	c.(346-348)CTG>CTA	p.L116L		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CCATGGAAACCAGGAGCACCA	0.463000													8	37					0	0	0.000274275	0	0
OR4K13	390433	broad.mit.edu	37	14	20502702	20502702	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:20502702G>A	uc010tkz.1	-	1	216	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AAGAAGCCAGGATCATATCAA	0.443000													11	39					0	0	0.000978159	0	0
OR4N5	390437	broad.mit.edu	37	14	20612776	20612776	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:20612776G>A	uc010tla.1	+	1	882	c.882G>A	c.(880-882)GTG>GTA	p.V294V		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	294	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		ACCAGGAGGTGAAAGCTTCCA	0.403000													16	51					0	0	0.000566183	0	0
RNF31	55072	broad.mit.edu	37	14	24619941	24619941	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:24619941C>T	uc001wmn.1	+	8	1581	c.1332C>T	c.(1330-1332)GCC>GCT	p.A444A	RNF31_uc001wml.1_Silent_p.A293A|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Silent_p.A259A|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	444	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		CACAACATGCCCCCCGGCCCT	0.592000													17	30					0	0	0.00229938	0	0
SAMD4A	23034	broad.mit.edu	37	14	55251330	55251330	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:55251330C>T	uc001xbb.2	+	11	2118	c.2117C>T	c.(2116-2118)GCC>GTC	p.A706V	SAMD4A_uc001xbc.2_Missense_Mutation_p.A618V|SAMD4A_uc001xbg.2_Missense_Mutation_p.A334V	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	707					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						ACCGAACACGCCCTGGGAGGT	0.552000													14	55					0	0	0.000308642	0	0
WDHD1	11169	broad.mit.edu	37	14	55493492	55493492	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:55493492C>G	uc001xbm.1	-	2	92	c.14G>C	c.(13-15)CGG>CCG	p.R5P	WDHD1_uc001xbn.1_Intron|SOCS4_uc001xbo.2_5'Flank|SOCS4_uc001xbp.2_5'Flank	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	5						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						CATTGGCTTCCGTGTGGCAGG	0.413000													3	112					0	0	6.4e-05	0	0
FBXO34	55030	broad.mit.edu	37	14	55818782	55818782	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:55818782C>T	uc001xbu.2	+	2	1919	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	FBXO34_uc001xbv.2_RNA|FBXO34_uc010aoo.2_Silent_p.F558F	NM_017943	NP_060413	Q9NWN3	FBX34_HUMAN	F-box only protein 34	558										ovary(2)|lung(2)|skin(1)	5						CGCATGACTTCCTGGAGACCA	0.488000													15	54					0	0	0.000308642	0	0
ACTR10	55860	broad.mit.edu	37	14	58701160	58701160	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:58701160G>C	uc001xdf.2	+	13	1248	c.1145G>C	c.(1144-1146)GGC>GCC	p.G382A	C14orf37_uc010tro.1_Intron|ACTR10_uc001xdg.2_Missense_Mutation_p.G184A|ACTR10_uc001xdh.2_Missense_Mutation_p.G184A|ACTR10_uc010trp.1_RNA|ACTR10_uc010apc.2_Missense_Mutation_p.G172A	NM_018477	NP_060947	Q9NZ32	ARP10_HUMAN	uncharacterized hypothalamus protein HARP11	382						cytoplasm				central_nervous_system(1)	1						AATCAGACGGGCCGTATACCT	0.393000													16	46					0	0	0.000422831	0	0
SYT16	83851	broad.mit.edu	37	14	62547953	62547953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:62547953G>A	uc001xfu.1	+	4	1592	c.1395G>A	c.(1393-1395)ATG>ATA	p.M465I	SYT16_uc010tsd.1_3'UTR|SYT16_uc010tse.1_Missense_Mutation_p.M23I	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	465										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		AAGGGGAAATGAAAGTGACTC	0.498000													4	24					0	0	0.000602214	0	0
C14orf50	145376	broad.mit.edu	37	14	65053991	65053991	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:65053991G>A	uc001xhl.1	+	10	887	c.791G>A	c.(790-792)GGG>GAG	p.G264E	C14orf50_uc001xhm.1_5'UTR	NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	264										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		GAAGAAGTAGGGAGACTCTTT	0.418000													7	30					0	0	0.00198382	0	0
ZFP36L1	677	broad.mit.edu	37	14	69257039	69257039	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:69257039G>A	uc001xkh.1	-	2	358	c.228C>T	c.(226-228)GCC>GCT	p.A76A	ZFP36L1_uc001xki.1_Silent_p.A76A	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	76					regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TCAGAGCGGGGGCTGGCTCAC	0.701000											OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	14					0	0	0.00116845	0	0
ISM2	145501	broad.mit.edu	37	14	77944663	77944663	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:77944663C>T	uc001xtz.2	-	6	1194	c.1120G>A	c.(1120-1122)GAG>AAG	p.E374K	ISM2_uc001xua.2_Silent_p.L258L|ISM2_uc001xty.2_Missense_Mutation_p.E286K|ISM2_uc010tvl.1_Missense_Mutation_p.E293K	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	374						extracellular region				skin(1)	1						TCCTTGTCCTCAGTGCCTTTG	0.627000													17	29					0	0	0.000566183	0	0
KCNK13	56659	broad.mit.edu	37	14	90651108	90651108	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr14:90651108G>A	uc001xye.1	+	2	1430	c.988G>A	c.(988-990)GAC>AAC	p.D330N		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	330	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				CATAGAGACAGACGGGGTGGC	0.622000													19	49					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	15	20488801	20488801	+	RNA	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:20488801C>T	uc001ytf.1	+	2		c.284C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		CTCATGAGAACTTTATGTGGA	0.418000													5	95					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	15	20496630	20496630	+	RNA	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:20496630G>A	uc001ytf.1	+	6		c.683G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCATGAAGGGGAAGCCGAGGG	0.438000													5	75					0	0	0.000602214	0	0
OR4N4	283694	broad.mit.edu	37	15	22382594	22382594	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:22382594G>A	uc001yuc.1	+	7	1103	c.122G>A	c.(121-123)GGA>GAA	p.G41E	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.G41E	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTCCCTGGAAATTTTCTC	0.443000													21	264					0	0	0.00188189	0	0
CYFIP1	23191	broad.mit.edu	37	15	22945140	22945140	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:22945140G>A	uc001yus.2	+	12	1315	c.1211G>A	c.(1210-1212)TGG>TAG	p.W404*	CYFIP1_uc001yut.2_Nonsense_Mutation_p.W404*|CYFIP1_uc010aya.1_Nonsense_Mutation_p.W432*	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	404					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		TTGTCGCAGTGGAGCGCGCAC	0.647000													5	16					0	0	0.00116845	0	0
GJD2	57369	broad.mit.edu	37	15	35044924	35044924	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:35044924C>T	uc001zis.1	-	2	721	c.721G>A	c.(721-723)GAA>AAA	p.E241K	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	241	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		ACATAACATTCCACCTCCTTG	0.483000													5	19					0	0	0.000602214	0	0
GPR176	11245	broad.mit.edu	37	15	40094226	40094226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:40094226C>T	uc001zkj.1	-	3	1521	c.655G>A	c.(655-657)GTG>ATG	p.V219M	GPR176_uc010uck.1_Missense_Mutation_p.V159M	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	219	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		AACACCACCACCACAGGCACA	0.557000											OREG0023053	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	20					0	0	0.00116845	0	0
INO80	54617	broad.mit.edu	37	15	41275119	41275119	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:41275119G>A	uc001zni.2	-	35	4607	c.4394C>T	c.(4393-4395)GCC>GTC	p.A1465V	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	1465	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						TGCAGCCCCGGCTTTGGCTCC	0.622000													25	51					0	0	0.000878237	0	0
VPS39	23339	broad.mit.edu	37	15	42453930	42453930	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:42453930G>A	uc001zpd.2	-	25	2686	c.2535C>T	c.(2533-2535)ATC>ATT	p.I845I	VPS39_uc001zpc.2_Silent_p.I834I|VPS39_uc001zpb.2_Silent_p.I180I	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	845					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CCTCTGTGATGATGCACTTCA	0.522000													31	116					0	0	0.00058488	0	0
DUOX2	50506	broad.mit.edu	37	15	45392980	45392980	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:45392980G>A	uc010bea.2	-	23	3181	c.2978C>T	c.(2977-2979)CCT>CTT	p.P993L	DUOX2_uc001zun.2_Missense_Mutation_p.P993L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	993	Cytoplasmic (Potential).|Interaction with TXNDC11 (By similarity).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CTTCAGTCCAGGGCCTCCCAG	0.592000													6	46					0	0	0.000157383	0	0
UNC13C	440279	broad.mit.edu	37	15	54799360	54799360	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:54799360G>A	uc002ack.2	+	21	5347	c.5347G>A	c.(5347-5349)GAT>AAT	p.D1783N		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1783					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TGTATCAAGTGATTTCAGTTC	0.318000													5	18					0	0	0.00116845	0	0
CLPX	10845	broad.mit.edu	37	15	65456425	65456425	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:65456425G>A	uc002aom.2	-	5	687	c.615C>T	c.(613-615)ATC>ATT	p.I205I	CLPX_uc010uiu.1_RNA|CLPX_uc010bhg.1_Silent_p.I205I	NM_006660	NP_006651	O76031	CLPX_HUMAN	ClpX caseinolytic protease X homolog precursor	205					protein folding|proteolysis involved in cellular protein catabolic process	mitochondrial endopeptidase Clp complex|mitochondrial inner membrane|mitochondrial nucleoid	ATP binding|ATPase activity|metal ion binding|peptidase activator activity|unfolded protein binding				0						GATTAGCTGGGATATTATTAT	0.368000													34	76					0	0	0.00170553	0	0
MYO9A	4649	broad.mit.edu	37	15	72172865	72172865	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:72172865G>C	uc002atl.3	-	29	5906	c.5433C>G	c.(5431-5433)AGC>AGG	p.S1811R	MYO9A_uc002atk.2_Missense_Mutation_p.S606R|MYO9A_uc002atm.1_Missense_Mutation_p.S607R	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1811	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GCAGTTCTGGGCTCAAAGGAG	0.428000													3	77					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	15	84946643	84946643	+	RNA	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:84946643G>A	uc002bke.1	-	1		c.575C>T								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		CCCCCAGCACGGCCCTCTAAG	0.512000													4	7					0	0	0.000602214	0	0
SLC28A1	9154	broad.mit.edu	37	15	85451966	85451966	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:85451966G>A	uc002blg.2	+	9	937	c.735G>A	c.(733-735)ACG>ACA	p.T245T	SLC28A1_uc010upd.1_Silent_p.T167T|SLC28A1_uc010bnb.2_Silent_p.T245T|SLC28A1_uc010upe.1_Silent_p.T245T|SLC28A1_uc010upf.1_Silent_p.T245T|SLC28A1_uc010upg.1_Silent_p.T245T	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	245					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TGAGCTACACGAAGGCTGGCT	0.552000													21	71					0	0	0.00047179	0	0
ACAN	176	broad.mit.edu	37	15	89400917	89400917	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:89400917G>A	uc010upo.1	+	12	5475	c.5101G>A	c.(5101-5103)GAC>AAC	p.D1701N	ACAN_uc010upp.1_Missense_Mutation_p.D1701N|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1701					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CAGTGAGCTGGACATTAGTGG	0.542000													23	82					0	0	0.00229938	0	0
LASS3	204219	broad.mit.edu	37	15	101016291	101016291	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr15:101016291C>T	uc002bvz.2	-	9	1111	c.609G>A	c.(607-609)AAG>AAA	p.K203K	LASS3_uc002bwa.2_Silent_p.K214K|LASS3_uc002bwb.2_Silent_p.K203K	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	203	TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			AGACACTTACCTTTCTCTTGA	0.353000													15	50					0	0	0.000422831	0	0
ACSM5	54988	broad.mit.edu	37	16	20448487	20448487	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:20448487G>A	uc002dhe.2	+	11	1569	c.1422G>A	c.(1420-1422)GTG>GTA	p.V474V		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	474					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						ACGACGATGTGATCAATTCTT	0.478000													20	68					0	0	0.000720815	0	0
DNAH3	55567	broad.mit.edu	37	16	21048171	21048171	+	Splice_Site	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:21048171C>T	uc010vbe.1	-	35	4951	c.4951_splice	c.e35-1	p.G1651_splice		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATATAATTCCCTGTTAAAAAG	0.313000													4	31					0	0	0.000602214	0	0
UQCRC2	7385	broad.mit.edu	37	16	21968575	21968575	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:21968575T>C	uc002djx.2	+	2	189	c.53T>C	c.(52-54)GTT>GCT	p.V18A	UQCRC2_uc002djy.2_Missense_Mutation_p.V18A|UQCRC2_uc010bxa.2_RNA	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II	18					aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		TCCCTCAAAGTTGCCCCCAAA	0.448000													8	27					0	0	0.000442599	0	0
PLK1	5347	broad.mit.edu	37	16	23695351	23695351	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:23695351C>T	uc002dlz.1	+	5	1030	c.977C>T	c.(976-978)TCG>TTG	p.S326L		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	326					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		CCAAGGTTTTCGATTGCTCCC	0.547000													24	77					0	0	0.00178596	0	0
SULT1A2	6799	broad.mit.edu	37	16	28607162	28607162	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:28607162G>A	uc002dqg.1	-	2	441	c.90C>T	c.(88-90)CCC>CCT	p.P30P	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Silent_p.P30P	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	30					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						AGCTCTGCAGGGGCCCCAGTG	0.637000													8	16					0	0	0.000673444	0	0
SRCAP	10847	broad.mit.edu	37	16	30731619	30731619	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:30731619C>T	uc002dze.1	+	19	3339	c.2954C>T	c.(2953-2955)CCC>CTC	p.P985L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P842L|SRCAP_uc010bzz.1_Missense_Mutation_p.P555L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	985	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GACCCCCCACCCCGGCCCAAG	0.572000													27	82					0	0	0.00283554	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552000													3	30					0	0	6.4e-05	0	0
ABCC11	85320	broad.mit.edu	37	16	48226507	48226507	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:48226507C>T	uc002eff.1	-	19	2980	c.2630G>A	c.(2629-2631)GGG>GAG	p.G877E	ABCC11_uc002efg.1_Missense_Mutation_p.G877E|ABCC11_uc002efh.1_Missense_Mutation_p.G877E|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	877	Helical; (Potential).|ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GGAGCAGACCCCCACACAGAT	0.572000									Cerumen_Type				9	26					0	0	0.000442599	0	0
ADCY7	113	broad.mit.edu	37	16	50342697	50342697	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:50342697C>T	uc002egd.1	+	16	2323	c.2055C>T	c.(2053-2055)ATC>ATT	p.I685I	ADCY7_uc002egc.1_Silent_p.I685I	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	685	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	TGGCCATCATCAACCTGGTGG	0.622000													6	23					0	0	0.00198382	0	0
SALL1	6299	broad.mit.edu	37	16	51173383	51173383	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:51173383G>A	uc010vgs.1	-	2	2781	c.2750C>T	c.(2749-2751)CCA>CTA	p.P917L	SALL1_uc010vgr.1_Missense_Mutation_p.P820L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	917					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGAGATGGCTGGGCTGCCAGC	0.552000													13	25					0	0	0.00244969	0	0
SALL1	6299	broad.mit.edu	37	16	51173738	51173738	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:51173738G>A	uc010vgs.1	-	2	2426	c.2395C>T	c.(2395-2397)CCC>TCC	p.P799S	SALL1_uc010vgr.1_Missense_Mutation_p.P702S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	799					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TAGCTGTCGGGGACTGGGGTG	0.507000													17	56					0	0	0.00121646	0	0
NLRC5	84166	broad.mit.edu	37	16	57060564	57060564	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:57060564C>T	uc002ekk.1	+	6	1934	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.S375F|NLRC5_uc002ekl.2_Missense_Mutation_p.S375F|NLRC5_uc002ekm.2_Missense_Mutation_p.S375F|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	570					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GGCCTGGCATCCTGCACCTGC	0.617000													9	30					0	0	0.000274275	0	0
CDH8	1006	broad.mit.edu	37	16	61761011	61761011	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:61761011C>T	uc002eog.1	-	9	1775	c.1523G>A	c.(1522-1524)GGA>GAA	p.G508E	CDH8_uc002eoh.2_Missense_Mutation_p.G277E	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	508	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GCCGGGTTTTCCATTTTCACA	0.378000													10	42					0	0	0.00136819	0	0
CES8	283848	broad.mit.edu	37	16	67029701	67029701	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:67029701G>A	uc002eqv.2	+	2	272	c.229G>A	c.(229-231)GGA>AGA	p.G77R	CES8_uc010vix.1_Missense_Mutation_p.G77R|CES8_uc002eqw.2_Missense_Mutation_p.G37R	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	77						extracellular region	carboxylesterase activity				0						GCCCTGGAAAGGAATCAGAGA	0.587000													7	33					0	0	0.000157383	0	0
MLKL	197259	broad.mit.edu	37	16	74709293	74709293	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:74709293G>A	uc002fdb.2	-	9	1641	c.1200C>T	c.(1198-1200)ATC>ATT	p.I400I	MLKL_uc002fdc.2_Missense_Mutation_p.S182L	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	400	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						CCCAGAGGACGATTCCAAAGC	0.478000													6	37					0	0	0.00198382	0	0
BCMO1	53630	broad.mit.edu	37	16	81295858	81295858	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr16:81295858C>T	uc002fgn.1	+	4	659	c.441C>T	c.(439-441)ATC>ATT	p.I147I	BCMO1_uc002fgm.1_Silent_p.I147I|BCMO1_uc010vnp.1_Silent_p.I78I	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	147					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						TCAGGAAAATCAACCCACAGA	0.507000													18	38					0	0	0.00121646	0	0
ITGAE	3682	broad.mit.edu	37	17	3657180	3657180	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:3657180G>A	uc002fwo.3	-	13	1523	c.1424C>T	c.(1423-1425)TCC>TTC	p.S475F		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	475	FG-GAP 4.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CGCGATGTAGGAGAGGCTGCA	0.627000													7	25					0	0	0.00198382	0	0
MYH1	4619	broad.mit.edu	37	17	10419889	10419889	+	Missense_Mutation	SNP	C	T	T	rs61730792	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:10419889C>T	uc002gmo.2	-	3	165	c.71G>A	c.(70-72)CGA>CAA	p.R24Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	24	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGCTTCAATTCGCTCCCTTTC	0.507000													18	56					0	0	0.00152264	0	0
MYOCD	93649	broad.mit.edu	37	17	12656204	12656204	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:12656204G>A	uc002gnn.2	+	10	1898	c.1599G>A	c.(1597-1599)TGG>TGA	p.W533*	MYOCD_uc002gno.2_Nonsense_Mutation_p.W533*|MYOCD_uc002gnp.1_Nonsense_Mutation_p.W437*|MYOCD_uc002gnq.2_Nonsense_Mutation_p.W252*	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	533	Potential.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AACTCACCTGGAAACTCCAGC	0.537000													5	18					0	0	0.00116845	0	0
ULK2	9706	broad.mit.edu	37	17	19699574	19699574	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:19699574G>A	uc002gwm.3	-	19	2340	c.1831C>T	c.(1831-1833)CCT>TCT	p.P611S	ULK2_uc002gwn.2_Missense_Mutation_p.P611S	NM_001142610	NP_001136082	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	611					signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)					TGAGTTTTAGGGATTTTGAAA	0.413000													10	26					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	17	20805643	20805643	+	RNA	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:20805643G>A	uc002gyg.1	+	4		c.827G>A			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		AGACGACGACGAAGTCTCCCA	0.557000													9	39					0	0	0.000274275	0	0
TMEM199	147007	broad.mit.edu	37	17	26688180	26688180	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:26688180G>T	uc002hba.2	+	6	540	c.533G>T	c.(532-534)CGG>CTG	p.R178L	SARM1_uc010wah.1_Intron	NM_152464	NP_689677	Q8N511	TM199_HUMAN	transmembrane protein 199	178						integral to membrane					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		CATCTCCAGCGGGTGCTAGCT	0.582000													5	50					0.00116845	0.00490204	0.00116845	1	0
SUPT6H	6830	broad.mit.edu	37	17	27020796	27020797	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:27020796_27020797TC>CT	uc002hby.2	+	28	3806_3807	c.3716_3717TC>CT	c.(3715-3717)TTC>TCT	p.F1239S	SUPT6H_uc010crt.2_Missense_Mutation_p.F1239S	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1239	S1 motif.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					GTCACCGGCTTCATCCCCACCA	0.525000													15	30					0	0	6.4e-05	0	0
UNC45B	146862	broad.mit.edu	37	17	33513548	33513548	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:33513548G>A	uc002hja.2	+	20	2863	c.2766G>A	c.(2764-2766)ATG>ATA	p.M922I	UNC45B_uc002hjb.2_Missense_Mutation_p.M920I|UNC45B_uc002hjc.2_Missense_Mutation_p.M920I|UNC45B_uc010cto.2_Missense_Mutation_p.M841I	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	922					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TCAAGTGCATGGATTATGGTT	0.527000													5	40					0	0	0.000602214	0	0
SLFN13	146857	broad.mit.edu	37	17	33767892	33767892	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:33767892G>A	uc002hjk.1	-	4	2746	c.2416C>T	c.(2416-2418)CCA>TCA	p.P806S	SLFN13_uc010wch.1_Missense_Mutation_p.P806S|SLFN13_uc002hjl.2_Missense_Mutation_p.P806S|SLFN13_uc010ctt.2_Missense_Mutation_p.P488S|SLFN13_uc002hjm.2_Missense_Mutation_p.P475S	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	806						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		ACATCCTTTGGAGAATAGCCC	0.448000													14	34					0	0	0.00244969	0	0
C17orf66	256957	broad.mit.edu	37	17	34192270	34192270	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:34192270C>T	uc002hke.1	-	3	418	c.269G>A	c.(268-270)CGA>CAA	p.R90Q	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.R90Q|C17orf66_uc010wcm.1_Missense_Mutation_p.R56Q	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	90							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CCTTTCCTCTCGCTGATCATA	0.507000													9	35					0	0	0.000673444	0	0
IKZF3	22806	broad.mit.edu	37	17	37922110	37922110	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:37922110C>T	uc002hsu.2	-	8	1525	c.1463G>A	c.(1462-1464)CGA>CAA	p.R488Q	IKZF3_uc002htd.2_Missense_Mutation_p.R454Q|IKZF3_uc010cwd.2_Missense_Mutation_p.R345Q|IKZF3_uc002hsv.2_Missense_Mutation_p.R415Q|IKZF3_uc010cwe.2_Missense_Mutation_p.R354Q|IKZF3_uc010cwf.2_Missense_Mutation_p.R306Q|IKZF3_uc010cwg.2_Missense_Mutation_p.R267Q|IKZF3_uc002hsw.2_Missense_Mutation_p.R449Q|IKZF3_uc002hsx.2_Missense_Mutation_p.R432Q|IKZF3_uc002hsy.2_Missense_Mutation_p.R449Q|IKZF3_uc002hsz.2_Missense_Mutation_p.R393Q|IKZF3_uc002hta.2_Missense_Mutation_p.R410Q|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.R401Q|IKZF3_uc002htc.2_Missense_Mutation_p.R241Q|IKZF3_uc010wel.1_Missense_Mutation_p.R241Q	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	488	C2H2-type 6; atypical.				B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATCATGGCTTCGATATCCACA	0.512000													18	60					0	0	0.000958276	0	0
WIPF2	147179	broad.mit.edu	37	17	38418887	38418887	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:38418887G>A	uc002hug.1	+	4	547	c.307G>A	c.(307-309)GGT>AGT	p.G103S	WIPF2_uc002huh.1_5'UTR|WIPF2_uc010cww.1_5'UTR|WIPF2_uc002hui.1_Missense_Mutation_p.G103S|WIPF2_uc010cwx.1_Intron|WIPF2_uc010cwy.1_Missense_Mutation_p.G103S	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	103						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						AGCCAAGGATGGTTCAGGTAT	0.537000										HNSCC(43;0.11)			11	44					0	0	0.00136819	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40839796	40839796	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:40839796C>T	uc002iay.2	+	8	1319	c.1103C>T	c.(1102-1104)CCT>CTT	p.P368L	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	368	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		TTCGGAGGCCCTCACAACTTC	0.607000													7	29					0	0	0.000274275	0	0
PLEKHM1	9842	broad.mit.edu	37	17	43535765	43535765	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:43535765G>A	uc002ija.2	-	6	1519	c.1349C>T	c.(1348-1350)CCT>CTT	p.P450L	PLEKHM1_uc010wjm.1_Missense_Mutation_p.P422L|PLEKHM1_uc002ijb.2_5'UTR|PLEKHM1_uc010wjn.1_Missense_Mutation_p.P399L|PLEKHM1_uc002ijc.2_Intron	NM_014798	NP_055613	Q9Y4G2	PKHM1_HUMAN	pleckstrin homology domain containing, family M	450					intracellular signal transduction	cytoplasm	metal ion binding				0	Renal(3;0.0405)					CTCCCGGGAAGGCCGGTAGAA	0.428000													7	18					0	0	0.00198382	0	0
CA10	56934	broad.mit.edu	37	17	50008440	50008440	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:50008440C>T	uc002itw.3	-	3	1175	c.189G>A	c.(187-189)GGG>GGA	p.G63G	CA10_uc002itv.3_Silent_p.G69G|CA10_uc002itx.3_Silent_p.G63G|CA10_uc002ity.3_Silent_p.G63G|CA10_uc002itz.2_Silent_p.G63G	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	63					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			ACTGCCGTTTCCCCACAGAGC	0.493000													27	62					0	0	0.000720815	0	0
NACA2	342538	broad.mit.edu	37	17	59668251	59668251	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:59668251C>T	uc002izj.2	-	1	317	c.291G>A	c.(289-291)TGG>TGA	p.W97*		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	97	NAC-A/B.				protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					TCTTAGATTTCCAGATAGTGA	0.448000													29	113					0	0	0.000814825	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62796684	62796684	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:62796684G>A	uc002jew.3	-	6	1267	c.356C>T	c.(355-357)CCT>CTT	p.P119L	PLEKHM1P_uc002jev.3_RNA|PLEKHM1P_uc010wqe.1_Missense_Mutation_p.P119L	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						GGGTTCCTCAGGCTGGTCTGA	0.682000													5	28					0	0	0.00116845	0	0
COG1	9382	broad.mit.edu	37	17	71197605	71197605	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:71197605G>A	uc002jjg.2	+	7	1675	c.1639G>A	c.(1639-1641)GTT>ATT	p.V547I	COG1_uc002jjh.2_Missense_Mutation_p.V547I|COG1_uc002jjf.1_Missense_Mutation_p.V547I	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	547					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			GCCCAAGGACGTTTCTCCCAC	0.532000													20	65					0	0	0.00152264	0	0
OTOP3	347741	broad.mit.edu	37	17	72937810	72937810	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr17:72937810C>T	uc010wrr.1	+	2	396	c.396C>T	c.(394-396)TCC>TCT	p.S132S	OTOP3_uc010wrq.1_Silent_p.S114S	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	132	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					AGGTCCTCTCCCTGCTTTGGC	0.622000													4	29					0	0	0.000602214	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6243335	6243335	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:6243335C>T	uc002kmz.3	-	7	578	c.418G>A	c.(418-420)GGA>AGA	p.G140R	L3MBTL4_uc010dkt.2_Missense_Mutation_p.G140R|L3MBTL4_uc002kmy.3_5'Flank	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	140	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TCACACCATCCTACTGGATGA	0.393000													13	44					0	0	0.00244969	0	0
DSC1	1823	broad.mit.edu	37	18	28720210	28720210	+	Missense_Mutation	SNP	C	T	T	rs141453659		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:28720210C>T	uc002kwn.2	-	10	1577	c.1315G>A	c.(1315-1317)GAG>AAG	p.E439K	DSC1_uc002kwm.2_Missense_Mutation_p.E439K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	439	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			AATTGTGCCTCGTTAATGACA	0.368000													13	37					0	0	0.00244969	0	0
DSG1	1828	broad.mit.edu	37	18	28934929	28934929	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:28934929G>A	uc002kwp.2	+	15	2982	c.2770G>A	c.(2770-2772)GAA>AAA	p.E924K	DSG1_uc010xbp.1_Missense_Mutation_p.E283K	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	924	Cytoplasmic (Potential).|Desmoglein repeat 4.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGTAGTGACAGAAAGAGTAAT	0.453000													32	87					0	0	0.001512	0	0
SLC14A2	8170	broad.mit.edu	37	18	43212336	43212336	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:43212336C>T	uc010dnj.2	+	6	864	c.543C>T	c.(541-543)CTC>CTT	p.L181L	SLC14A2_uc002lbb.2_Silent_p.L181L|SLC14A2_uc002lbe.2_Silent_p.L181L	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	181	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCTCAGGACTCCATGGGTACA	0.463000													8	56					0	0	0.000442599	0	0
HAUS1	115106	broad.mit.edu	37	18	43685196	43685196	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:43685196C>T	uc002lbu.2	+	2	147	c.67C>T	c.(67-69)CCT>TCT	p.P23S	ATP5A1_uc002lbt.1_5'Flank|HAUS1_uc002lbv.2_5'UTR	NM_138443	NP_612452	Q96CS2	HAUS1_HUMAN	coiled-coil domain containing 5	23					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole				ovary(1)	1						TGGAGATCATCCTATTCCACA	0.403000													6	23					0	0	0.00198382	0	0
CCBE1	147372	broad.mit.edu	37	18	57103247	57103247	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr18:57103247G>A	uc002lib.2	-	11	1184	c.1114C>T	c.(1114-1116)CAG>TAG	p.Q372*	CCBE1_uc010dpq.2_Nonsense_Mutation_p.Q101*|CCBE1_uc002lia.2_Nonsense_Mutation_p.Q225*	NM_133459	NP_597716	Q6UXH8	CCBE1_HUMAN	collagen and calcium binding EGF domains 1	372					lymphangiogenesis|sprouting angiogenesis|venous blood vessel morphogenesis	collagen	calcium ion binding			skin(2)|ovary(1)	3		Colorectal(73;0.175)				GGAAATTCCTGAGGTAAAGGG	0.527000													17	78					0	0	0.000958276	0	0
C19orf21	126353	broad.mit.edu	37	19	757922	757922	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:757922C>T	uc002lpo.2	+	2	1059	c.976C>T	c.(976-978)CCC>TCC	p.P326S		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	326										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGGAAATCCCCACCAGGCC	0.662000													6	8					0	0	0.00116845	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3639001	3639001	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:3639001G>A	uc002lyj.1	-	16	1858	c.1801C>T	c.(1801-1803)CCG>TCG	p.P601S	PIP5K1C_uc010xhq.1_Missense_Mutation_p.P601S|PIP5K1C_uc010xhr.1_Missense_Mutation_p.P601S	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	601					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GCACCGGCCGGGGAAGCCTCC	0.692000													5	35					0	0	0.00198382	0	0
C3	718	broad.mit.edu	37	19	6685029	6685029	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:6685029C>T	uc002mfm.2	-	30	4001	c.3939G>A	c.(3937-3939)TGG>TGA	p.W1313*	C3_uc002mfl.2_Nonsense_Mutation_p.W49*	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1313					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TGGCAGATTCCCAGTGGATAC	0.577000													3	19					0	0	6.4e-05	0	0
C19orf45	374877	broad.mit.edu	37	19	7570315	7570316	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:7570315_7570316GG>AA	uc002mgm.2	+	5	1029_1030	c.888_889GG>AA	c.(886-891)AGGGAG>AGAAAG	p.E297K	C19orf45_uc010xjo.1_5'Flank	NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	297											0						TCTATGCCAGGGAGCCAGGTGA	0.639000													8	10					0	0	6.4e-05	0	0
MAP2K7	5609	broad.mit.edu	37	19	7975960	7975960	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:7975960C>T	uc002mit.2	+	7	836	c.771C>T	c.(769-771)ATC>ATT	p.I257I	MAP2K7_uc002miv.2_Silent_p.I257I|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_Silent_p.I257I|MAP2K7_uc010dvv.2_Silent_p.I132I	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	257	Protein kinase.				activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	GGGGCCAGATCAAGCTCTGCG	0.642000													5	12					0	0	0.00198382	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661948	8661948	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:8661948G>A	uc002mkj.1	-	8	1237	c.963C>T	c.(961-963)ATC>ATT	p.I321I	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	321	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						TGTGGTTCACGATGGATTTCT	0.572000													18	45					0	0	0.00152264	0	0
MUC16	94025	broad.mit.edu	37	19	9028320	9028320	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:9028320C>T	uc002mkp.2	-	11	36676	c.36472G>A	c.(36472-36474)GAC>AAC	p.D12158N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12160	SEA 1.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CGCTCTCTGTCCAGTCCGAGG	0.557000													18	46					0	0	0.00074312	0	0
MUC16	94025	broad.mit.edu	37	19	9069926	9069926	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:9069926G>A	uc002mkp.2	-	3	17724	c.17520C>T	c.(17518-17520)TCC>TCT	p.S5840S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5842	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTTTCTGTGGAGATGTAGG	0.473000													22	58					0	0	0.00278032	0	0
ZNF566	84924	broad.mit.edu	37	19	36940898	36940898	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:36940898C>G	uc002oea.3	-	5	320	c.238G>C	c.(238-240)GAA>CAA	p.E80Q	ZNF566_uc010xte.1_Missense_Mutation_p.E80Q|ZNF566_uc010xtf.1_Missense_Mutation_p.E81Q|ZNF566_uc002oeb.3_Missense_Mutation_p.E80Q|ZNF566_uc002oec.3_5'UTR|ZNF566_uc010xtg.1_5'UTR	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					CATCTTGATTCCAGGACTGAA	0.303000													7	23					0	0	0.00198382	0	0
FCGBP	8857	broad.mit.edu	37	19	40433354	40433354	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:40433354G>A	uc002omp.3	-	2	923	c.915C>T	c.(913-915)CTC>CTT	p.L305L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	305	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGACAGGTAGAGTGGCCAGG	0.557000													6	17					0	0	0.00116845	0	0
AXL	558	broad.mit.edu	37	19	41744418	41744418	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:41744418G>A	uc010ehj.2	+	8	1228	c.1038G>A	c.(1036-1038)GGG>GGA	p.G346G	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.G346G|AXL_uc010ehk.2_Silent_p.G346G	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	346	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CGCGGAATGGGAGCCAGGCCT	0.667000													6	19					0	0	0.00116845	0	0
GRIK5	2901	broad.mit.edu	37	19	42563645	42563645	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:42563645G>A	uc002osj.1	-	5	578	c.543C>T	c.(541-543)TTC>TTT	p.F181F	GRIK5_uc010eib.1_Silent_p.F100F	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	181	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	TGGAGATGAGGAAGCCACGCA	0.607000													10	13					0	0	0.000978159	0	0
ZNF233	353355	broad.mit.edu	37	19	44770435	44770435	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:44770435C>T	uc002oyz.1	+	3	227	c.100C>T	c.(100-102)CAA>TAA	p.Q34*	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_5'UTR	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	34	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				AAAGCTGTACCAAGATGTGAT	0.522000													18	40					0	0	0.000958276	0	0
ERCC2	2068	broad.mit.edu	37	19	45860600	45860600	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:45860600C>T	uc002pbj.2	-	15	1454	c.1407G>A	c.(1405-1407)AAG>AAA	p.K469K	ERCC2_uc002pbh.2_Silent_p.K32K|ERCC2_uc002pbi.2_Silent_p.K162K|ERCC2_uc010ejz.2_Silent_p.K391K|ERCC2_uc002pbk.2_Silent_p.K445K	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	469	Mediates interaction with MMS19.				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		AGTCCAGGATCTTGGGGTAGA	0.647000			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				5	10					0	0	0.00198382	0	0
ERCC1	2067	broad.mit.edu	37	19	45924602	45924602	+	Missense_Mutation	SNP	G	A	A	rs149666093	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:45924602G>A	uc002pbs.1	-	3	301	c.155C>T	c.(154-156)TCG>TTG	p.S52L	ERCC1_uc002pbt.1_Missense_Mutation_p.S52L|ERCC1_uc002pbu.1_Intron|ERCC1_uc002pbv.2_Missense_Mutation_p.S52L	NM_001983	NP_001974	P07992	ERCC1_HUMAN	excision repair cross-complementing 1 isofrom 2	52					mitotic recombination|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|response to oxidative stress|transcription-coupled nucleotide-excision repair	cytoplasm|nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair complex	damaged DNA binding|endonuclease activity|protein C-terminus binding|protein domain specific binding|single-stranded DNA binding			ovary(2)	2		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0247)		CGCCTGGGCCGAGGTGTCCAC	0.637000								NER					9	20					0	0	0.000673444	0	0
CABP5	56344	broad.mit.edu	37	19	48543898	48543898	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:48543898C>T	uc002phu.1	-	3	327	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_019855	NP_062829	Q9NP86	CABP5_HUMAN	calcium binding protein 5	68	EF-hand 2.				signal transduction	cytoplasm	calcium ion binding			skin(1)	1		all_cancers(25;1.86e-08)|all_lung(116;1.14e-06)|all_epithelial(76;1.16e-06)|Lung NSC(112;2.54e-06)|all_neural(266;0.0138)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;4.09e-05)|all cancers(93;0.000322)|Epithelial(262;0.01)|GBM - Glioblastoma multiforme(486;0.058)		TCAATCAGTTCCATCTCCGTG	0.537000													9	28					0	0	0.000673444	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50453419	50453419	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:50453419C>T	uc010ybh.1	-	11	1996	c.1905G>A	c.(1903-1905)GGG>GGA	p.G635G	SIGLEC11_uc010ybi.1_Silent_p.G539G	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	635	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CTTCCCCCTTCCCCGGGGTGT	0.662000													4	5					0	0	0.00024832	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918165	51918165	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:51918165G>A	uc002pwo.2	-	8	2144	c.1528C>T	c.(1528-1530)CAT>TAT	p.H510Y	SIGLEC10_uc002pwp.2_Missense_Mutation_p.H452Y|SIGLEC10_uc002pwq.2_Intron|SIGLEC10_uc002pwr.2_Intron|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Intron|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	510	Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		AGCCCTCCATGGAGGCTCAGG	0.687000													12	20					0	0	0.00136819	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58551914	58551914	+	Splice_Site	SNP	T	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr19:58551914T>G	uc002qrc.1	+	4	712	c.465_splice	c.e4+2	p.Q155_splice		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1						viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCATCGCAGGTGAGCCCGGGG	0.617000													6	16					0	0	0.00116845	0	0
ITSN2	50618	broad.mit.edu	37	2	24533444	24533444	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:24533444G>A	uc002rfe.2	-	6	728	c.470C>T	c.(469-471)CCC>CTC	p.P157L	ITSN2_uc002rff.2_Missense_Mutation_p.P157L|ITSN2_uc002rfg.2_Missense_Mutation_p.P157L|ITSN2_uc010eyd.2_Missense_Mutation_p.P157L	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	157					endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGCACTAGGGGAGTGGGCAT	0.463000													10	37					0	0	0.00185496	0	0
LTBP1	4052	broad.mit.edu	37	2	33477883	33477883	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:33477883C>G	uc002ros.2	+	11	2139	c.2139C>G	c.(2137-2139)CAC>CAG	p.H713Q	LTBP1_uc002rot.2_Missense_Mutation_p.H387Q|LTBP1_uc002rou.2_Missense_Mutation_p.H387Q|LTBP1_uc002rov.2_Missense_Mutation_p.H387Q|LTBP1_uc010ymz.1_Missense_Mutation_p.H387Q|LTBP1_uc010yna.1_Missense_Mutation_p.H387Q	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	713	TB 2.				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGGGCCCACACTGTGAGAAAT	0.542000													3	54					0	0	6.4e-05	0	0
RASGRP3	25780	broad.mit.edu	37	2	33749032	33749032	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:33749032C>T	uc002rox.2	+	9	1230	c.603C>T	c.(601-603)ATC>ATT	p.I201I	RASGRP3_uc010ync.1_Silent_p.I201I|RASGRP3_uc002roy.2_Silent_p.I201I	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	201	Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTAATGGAATCTCTAAGTGGG	0.418000													35	111					0	0	0.00058488	0	0
ZFP36L2	678	broad.mit.edu	37	2	43452068	43452068	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:43452068G>A	uc002rsv.3	-	2	1166	c.875C>T	c.(874-876)TCC>TTC	p.S292F	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	292					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				cgaagagcaggaggGCGGCGG	0.587000													4	14					0	0	0.00024832	0	0
RHOQ	23433	broad.mit.edu	37	2	46770907	46770907	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:46770907G>C	uc002rva.2	+	2	476	c.157G>C	c.(157-159)GGG>CGG	p.G53R	ATP6V1E2_uc002ruz.2_5'Flank	NM_012249	NP_036381	P17081	RHOQ_HUMAN	ras-like protein TC10 precursor	53					cortical actin cytoskeleton organization|insulin receptor signaling pathway|negative regulation of establishment of protein localization in plasma membrane|positive regulation of filopodium assembly|positive regulation of glucose import|positive regulation of transcription from RNA polymerase II promoter|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	actin filament|cytosol|plasma membrane	GBD domain binding|GTP binding|GTPase activity|profilin binding			skin(2)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			CGTCACCGTGGGGGGCAAGCA	0.642000													3	10					0	0	0.00024832	0	0
NRXN1	9378	broad.mit.edu	37	2	50724774	50724774	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:50724774G>A	uc010fbq.2	-	14	4173	c.2696C>T	c.(2695-2697)TCT>TTT	p.S899F	NRXN1_uc002rxb.3_Missense_Mutation_p.S531F|NRXN1_uc002rxe.3_Missense_Mutation_p.S859F|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GGGGACAGAAGAAAGATACCG	0.418000													8	25					0	0	0.000274275	0	0
CD207	50489	broad.mit.edu	37	2	71058321	71058321	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:71058321G>A	uc002shg.2	-	6	894	c.847C>T	c.(847-849)CCA>TCA	p.P283S		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	283	C-type lectin.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						GGCTCACCTGGAATCCAGAAC	0.433000													14	34					0	0	0.00244969	0	0
C2orf78	388960	broad.mit.edu	37	2	74044065	74044065	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:74044065C>T	uc002sjr.1	+	3	2836	c.2715C>T	c.(2713-2715)TTC>TTT	p.F905F		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	905										ovary(2)	2						TGCAGTTTTTCATTGAAAGGG	0.443000													5	10					0	0	0.000602214	0	0
SFTPB	6439	broad.mit.edu	37	2	85892448	85892448	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:85892448C>T	uc002sqh.2	-	6	642	c.636G>A	c.(634-636)AGG>AGA	p.R212R	SFTPB_uc002sqi.2_Silent_p.R224R|SFTPB_uc002sqj.2_Silent_p.R212R	NM_198843	NP_942140	P07988	PSPB_HUMAN	surfactant, pulmonary-associated protein B	212	Saposin B-type 2.				organ morphogenesis|respiratory gaseous exchange|sphingolipid metabolic process	extracellular space|lysosome				ovary(1)|central_nervous_system(1)	2						TGATCAGAGCCCTGCAGAGCC	0.597000													17	88					0	0	0.00121646	0	0
UXS1	80146	broad.mit.edu	37	2	106721260	106721260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:106721260G>A	uc002tdm.2	-	11	996	c.898C>T	c.(898-900)CAG>TAG	p.Q300*	UXS1_uc002tdl.2_Nonsense_Mutation_p.Q132*|UXS1_uc002tdn.2_Nonsense_Mutation_p.Q305*|UXS1_uc002tdo.2_Nonsense_Mutation_p.Q243*|UXS1_uc010ywh.1_Nonsense_Mutation_p.Q144*	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	300	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						CTGACGTACTGGAACGCCCTT	0.527000											OREG0014864	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	48					0	0	0.000308642	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626960	108626960	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:108626960C>T	uc002tdv.2	+	9	1662	c.1386C>T	c.(1384-1386)TAC>TAT	p.Y462Y	SLC5A7_uc010ywm.1_Silent_p.Y215Y|SLC5A7_uc010fjj.2_Silent_p.Y462Y|SLC5A7_uc010ywn.1_Silent_p.Y349Y	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	462	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TGATCTTCTACCCTGGCTATT	0.423000													9	41					0	0	0.000673444	0	0
MARCO	8685	broad.mit.edu	37	2	119739012	119739012	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:119739012G>A	uc002tln.1	+	9	926	c.794G>A	c.(793-795)GGA>GAA	p.G265E	MARCO_uc010yyf.1_Missense_Mutation_p.G187E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	265	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						GGCATGAAAGGAGATGCAGGG	0.562000													5	9					0	0	0.00198382	0	0
RALB	5899	broad.mit.edu	37	2	121047207	121047207	+	Silent	SNP	C	T	T	rs148143386		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:121047207C>T	uc002tmk.2	+	4	565	c.375C>T	c.(373-375)GTC>GTT	p.V125V	RALB_uc010yys.1_Silent_p.V147V|RALB_uc002tml.2_Silent_p.V146V|RALB_uc002tmm.2_RNA|RALB_uc010yyt.1_RNA	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	125					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				CACTGCTCGTCGTGGGAAACA	0.502000													21	72					0	0	0.00229938	0	0
NEB	4703	broad.mit.edu	37	2	152404158	152404158	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:152404158G>A	uc010fnx.2	-	104	15340	c.15149C>T	c.(15148-15150)GCT>GTT	p.A5050V	NEB_uc002txr.2_Missense_Mutation_p.A1473V	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5050	Nebulin 138.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCACTGACAGCCTCTTGTGT	0.428000													5	15					0	0	0.00198382	0	0
PRPF40A	55660	broad.mit.edu	37	2	153527837	153527837	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:153527837G>A	uc002tyh.3	-	14	1451	c.1429C>T	c.(1429-1431)CGT>TGT	p.R477C	PRPF40A_uc002tyg.3_5'Flank|PRPF40A_uc010zcd.1_Missense_Mutation_p.R424C	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	504	FF 2.				mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						ATTTCAAGACGATCACGTTCT	0.249000													20	85					0	0	0.000720815	0	0
SCN2A	6326	broad.mit.edu	37	2	166179918	166179919	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:166179918_166179919GG>AA	uc002udc.2	+	12	2214_2215	c.1924_1925GG>AA	c.(1924-1926)GGG>AAG	p.G642K	SCN2A_uc002udd.2_Missense_Mutation_p.G642K|SCN2A_uc002ude.2_Missense_Mutation_p.G642K	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	642					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GCCCATGAATGGGAAGATGCAT	0.619000													4	17					0	0	6.4e-05	0	0
SCN9A	6335	broad.mit.edu	37	2	167055825	167055825	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:167055825C>T	uc010fpl.2	-	27	5632	c.5291G>A	c.(5290-5292)AGT>AAT	p.S1764N	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1775						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GTCATCCTCACTCAGAGGTTC	0.418000													15	63					0	0	0.00074312	0	0
XIRP2	129446	broad.mit.edu	37	2	168105599	168105599	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:168105599C>T	uc002udx.2	+	8	7715	c.7697C>T	c.(7696-7698)TCT>TTT	p.S2566F	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S2391F|XIRP2_uc010fpq.2_Missense_Mutation_p.S2344F|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2391	Potential.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGGAGAGTTCTTACTACAAC	0.318000													21	66					0	0	0.00188189	0	0
LRP2	4036	broad.mit.edu	37	2	170097627	170097627	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:170097627G>C	uc002ues.2	-	25	4129	c.3916C>G	c.(3916-3918)CCT>GCT	p.P1306A	LRP2_uc010zdf.1_Missense_Mutation_p.P1169A	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1306	LDL-receptor class A 14.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGCTGAGTAGGGCAGTCCTTC	0.502000													17	37					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179614337	179614337	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:179614337C>T	uc002unb.2	-	46	13014	c.12790G>A	c.(12790-12792)GAA>AAA	p.E4264K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	415							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATAAATTTCACCAATATTT	0.393000													8	35					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179648854	179648854	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:179648854G>A	uc010zfg.1	-	16	2942	c.2718C>T	c.(2716-2718)ATC>ATT	p.I906I	TTN_uc010zfh.1_Silent_p.I860I|TTN_uc010zfi.1_Silent_p.I860I|TTN_uc010zfj.1_Silent_p.I860I|TTN_uc002unb.2_Silent_p.I906I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	906							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTGCCAGTGATGCTCACCC	0.552000													11	51					0	0	0.00185496	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187703815	187703815	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:187703815C>T	uc002upu.1	-	4	405	c.365G>A	c.(364-366)GGA>GAA	p.G122E		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	122					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTCATTTGTTCCTGGTTGGGG	0.403000													32	99					0	0	0.00209593	0	0
FAM117B	150864	broad.mit.edu	37	2	203589649	203589649	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:203589649G>C	uc010zhx.1	+	3	773	c.763G>C	c.(763-765)GCA>CCA	p.A255P	FAM117B_uc010zhw.1_Missense_Mutation_p.A255P	NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	255										ovary(1)	1						GACAGAGAGTGCATGGGCTGA	0.368000													30	111					0	0	0.00283554	0	0
FAM117B	150864	broad.mit.edu	37	2	203589651	203589651	+	Silent	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:203589651A>C	uc010zhx.1	+	3	775	c.765A>C	c.(763-765)GCA>GCC	p.A255A	FAM117B_uc010zhw.1_Silent_p.A255A	NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	255										ovary(1)	1						CAGAGAGTGCATGGGCTGAAG	0.368000													30	114					0	0	0.00283554	0	0
PTH2R	5746	broad.mit.edu	37	2	209309571	209309571	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:209309571C>T	uc002vdb.2	+	7	1025	c.812C>T	c.(811-813)TCG>TTG	p.S271L	PTH2R_uc010zjb.1_Missense_Mutation_p.S282L	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	271	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GCTTTCTTTTCGGACACCAAA	0.398000													21	86					0	0	0.00229938	0	0
CPS1	1373	broad.mit.edu	37	2	211525297	211525297	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:211525297T>A	uc002vee.3	+	32	3977	c.3845T>A	c.(3844-3846)GTG>GAG	p.V1282E	CPS1_uc010fur.2_Missense_Mutation_p.V1288E|CPS1_uc010fus.2_Missense_Mutation_p.V831E	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1282	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GCCACCAAGGTGATGATTGGA	0.403000													30	79					0	0	0.00178596	0	0
PTPRN	5798	broad.mit.edu	37	2	220166879	220166879	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:220166879G>A	uc002vkz.2	-	6	1063	c.974C>T	c.(973-975)GCT>GTT	p.A325V	PTPRN_uc010zlc.1_Missense_Mutation_p.A235V|PTPRN_uc002vla.2_Missense_Mutation_p.A325V	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	325	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AGCTGGGGAAGCAGGCTTCTC	0.612000													4	21					0	0	0.000602214	0	0
SPEG	10290	broad.mit.edu	37	2	220333434	220333434	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr2:220333434C>T	uc010fwg.2	+	11	3277	c.3277C>T	c.(3277-3279)CCT>TCT	p.P1093S		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1093	Ig-like 5.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CACCCCGCCCCCTGTTGTTAC	0.657000													6	27					0	0	0.00198382	0	0
ISM1	140862	broad.mit.edu	37	20	13279725	13279725	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:13279725C>T	uc010gce.1	+	6	1020	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	338	AMOP.					extracellular region					0						CCGACATCTTCGACCGCATCA	0.597000													4	14					0	0	0.000602214	0	0
DEFB121	245934	broad.mit.edu	37	20	29993947	29993947	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:29993947G>A	uc002wvv.1	-	1	45	c.9C>T	c.(7-9)CTC>CTT	p.L3L		NM_001011878	NP_001011878	Q5J5C9	DB121_HUMAN	defensin, beta 121 precursor	3					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			GCAGAAGAAGGAGCTTCATGA	0.488000													7	27					0	0	0.000157383	0	0
C20orf152	140894	broad.mit.edu	37	20	34572599	34572599	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:34572599G>A	uc002xes.1	+	6	771	c.615G>A	c.(613-615)ATG>ATA	p.M205I	C20orf152_uc002xer.1_Missense_Mutation_p.M205I|C20orf152_uc010gfp.1_RNA			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	205	cNMP.										0	Breast(12;0.00631)					TCGTCTGTATGGAAGAAACGG	0.502000													9	34					0	0	0.000442599	0	0
PTPRT	11122	broad.mit.edu	37	20	40730818	40730818	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:40730818G>A	uc002xkg.2	-	26	3844	c.3660C>T	c.(3658-3660)TTC>TTT	p.F1220F	PTPRT_uc010ggj.2_Silent_p.F1239F|PTPRT_uc010ggi.2_Silent_p.F423F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1220	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CTGAGATAAGGAAGGGCAGGC	0.582000													12	26					0	0	0.00244969	0	0
PTPRT	11122	broad.mit.edu	37	20	41076937	41076937	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:41076937C>T	uc002xkg.2	-	9	1667	c.1483G>A	c.(1483-1485)GGG>AGG	p.G495R	PTPRT_uc010ggj.2_Missense_Mutation_p.G495R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	495	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AAGGGCCCCCCTTGGATGGAT	0.507000													11	68					0	0	0.00185496	0	0
OSBPL2	9885	broad.mit.edu	37	20	60847231	60847231	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr20:60847231C>T	uc002yck.1	+	5	511	c.309C>T	c.(307-309)TTC>TTT	p.F103F	OSBPL2_uc002ycl.1_Silent_p.F91F|OSBPL2_uc011aah.1_Silent_p.F11F	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	103					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			CTCTGAGCTTCTTGCAGCGGA	0.602000													7	33					0	0	0.000157383	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													11	28					0	0	0.000978159	0	0
APP	351	broad.mit.edu	37	21	27327992	27327992	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:27327992G>A	uc002ylz.2	-	12	1736	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	APP_uc011acg.1_Silent_p.F20F|APP_uc010glk.2_Silent_p.F488F|APP_uc002yma.2_Silent_p.F493F|APP_uc011ach.1_Silent_p.F456F|APP_uc002ymb.2_Silent_p.F437F|APP_uc010glj.2_Silent_p.F381F|APP_uc011aci.1_Silent_p.F402F	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	512	Heparin-binding.|Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				GCACATGCTCGAAATGCTTTA	0.493000													15	38					0	0	0.000308642	0	0
DSCAM	1826	broad.mit.edu	37	21	41414514	41414514	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:41414514C>T	uc002yyq.1	-	32	5922	c.5470G>A	c.(5470-5472)GAA>AAA	p.E1824K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1824	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGTTGCTCTTCCATCTTGGCG	0.537000													11	33					0	0	0.000978159	0	0
UMODL1	89766	broad.mit.edu	37	21	43504239	43504239	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:43504239C>T	uc002zaf.1	+	3	365	c.365C>T	c.(364-366)CCC>CTC	p.P122L	UMODL1_uc002zad.1_Missense_Mutation_p.P50L|UMODL1_uc002zae.1_Missense_Mutation_p.P50L|UMODL1_uc002zag.1_Missense_Mutation_p.P122L|UMODL1_uc010gow.1_5'Flank|UMODL1_uc002zai.1_5'Flank|UMODL1_uc010gox.1_5'Flank|UMODL1_uc010goy.1_5'Flank|UMODL1_uc002zaj.1_5'Flank|UMODL1_uc010goz.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	122	Extracellular (Potential).|WAP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GGGGCCTGCCCCGCAGAGGGG	0.562000													17	48					0	0	0.000422831	0	0
UBASH3A	53347	broad.mit.edu	37	21	43862599	43862599	+	Silent	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:43862599A>G	uc002zbe.2	+	12	1560	c.1524A>G	c.(1522-1524)GAA>GAG	p.E508E	UBASH3A_uc002zbf.2_Silent_p.E470E|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.E470E	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	508	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						TACGAGTGGAACCTGGAATCT	0.413000													17	72					0	0	0.000422831	0	0
TRPM2	7226	broad.mit.edu	37	21	45815418	45815418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:45815418G>A	uc002zet.1	+	13	2129	c.1916G>A	c.(1915-1917)GGA>GAA	p.G639E	TRPM2_uc002zeu.1_Missense_Mutation_p.G639E|TRPM2_uc002zew.1_Missense_Mutation_p.G639E|TRPM2_uc010gpt.1_Missense_Mutation_p.G639E|TRPM2_uc002zex.1_Missense_Mutation_p.G425E|TRPM2_uc002zey.1_Missense_Mutation_p.G152E	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	639	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GAGCTGGCAGGAATCATCTGG	0.577000													18	53					0	0	0.000958276	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032225	46032225	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr21:46032225C>T	uc002zfo.1	+	1	230	c.208C>T	c.(208-210)CCC>TCC	p.P70S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	70	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						TGCCCCAGCCCCCTGCCTGGC	0.657000													4	28					0	0	0.00024832	0	0
SEZ6L	23544	broad.mit.edu	37	22	26736566	26736566	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:26736566G>A	uc003acb.2	+	10	2336	c.2180G>A	c.(2179-2181)GGA>GAA	p.G727E	SEZ6L_uc003acc.2_Missense_Mutation_p.G727E|SEZ6L_uc011akc.1_Missense_Mutation_p.G727E|SEZ6L_uc003acd.2_Missense_Mutation_p.G727E|SEZ6L_uc011akd.1_Missense_Mutation_p.G727E|SEZ6L_uc003ace.2_Missense_Mutation_p.G727E|SEZ6L_uc003acf.1_Missense_Mutation_p.G500E|SEZ6L_uc010gvc.1_Missense_Mutation_p.G500E	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	727	CUB 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTCATCTTTGGAAAGGGCCAG	0.468000													10	32					0	0	0.00185496	0	0
SELM	140606	broad.mit.edu	37	22	31501034	31501034	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:31501034G>A	uc011ali.1	-	6	420	c.360C>T	c.(358-360)CCC>CCT	p.P120P	SELM_uc011alj.1_RNA|INPP5J_uc010gwf.2_5'Flank	NM_080430	NP_536355	Q8WWX9	SELM_HUMAN	selenoprotein M precursor	120						endoplasmic reticulum|Golgi apparatus|nucleus|perinuclear region of cytoplasm					0						CCTGCGCGTCGGGCGCCGCCT	0.692000													8	17					0	0	0.000157383	0	0
APOL6	80830	broad.mit.edu	37	22	36055516	36055516	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:36055516G>A	uc003aoe.2	+	3	1199	c.905G>A	c.(904-906)GGG>GAG	p.G302E	APOL6_uc003aod.2_RNA	NM_030641	NP_085144	Q9BWW8	APOL6_HUMAN	apolipoprotein L6	302					lipoprotein metabolic process	cytoplasm|extracellular region	lipid binding|lipid transporter activity				0						AGGGCCAGAGGGGTGGGGAAG	0.502000													8	38					0	0	0.000274275	0	0
CACNA1I	8911	broad.mit.edu	37	22	40068313	40068313	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:40068313G>A	uc003ayc.2	+	27	4649	c.4649G>A	c.(4648-4650)CGA>CAA	p.R1550Q	CACNA1I_uc003ayd.2_Missense_Mutation_p.R1515Q|CACNA1I_uc003aye.2_Missense_Mutation_p.R1465Q|CACNA1I_uc003ayf.2_Missense_Mutation_p.R1430Q	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1550	Cytoplasmic (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TTCAAGGACCGGTGAGTGGCC	0.537000													25	85					0	0	0.00047179	0	0
NDUFA6	4700	broad.mit.edu	37	22	42482318	42482318	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:42482318C>G	uc003bcb.2	-	3	396	c.334G>C	c.(334-336)GGA>CGA	p.G112R		NM_002490	NP_002481	P56556	NDUA6_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	112					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	TCGATCTTTCCCTGAACAGTG	0.313000													3	40					0	0	6.4e-05	0	0
PLXNB2	23654	broad.mit.edu	37	22	50719920	50719920	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr22:50719920G>A	uc003bkv.3	-	22	3637	c.3531C>T	c.(3529-3531)TTC>TTT	p.F1177F	PLXNB2_uc003bkt.1_5'UTR|PLXNB2_uc003bku.1_Silent_p.F162F	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1177	Extracellular (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGCGAGAGCCGAACTTCACCT	0.687000													7	23					0	0	0.00198382	0	0
CNTN4	152330	broad.mit.edu	37	3	2908630	2908630	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:2908630G>A	uc003bpc.2	+	7	870	c.649G>A	c.(649-651)GAT>AAT	p.D217N	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.D217N	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	217					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATTGAGAAATGATGGTGAGTT	0.383000													5	20					0	0	0.00116845	0	0
GRM7	2917	broad.mit.edu	37	3	7721964	7721964	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:7721964G>A	uc003bqm.2	+	9	2954	c.2680G>A	c.(2680-2682)GAA>AAA	p.E894K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E894K|GRM7_uc003bql.2_Missense_Mutation_p.E894K|GRM7_uc003bqn.1_Missense_Mutation_p.E477K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	894	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CGAGCTCTGTGAAAACGTAGA	0.527000													5	20					0	0	0.000602214	0	0
MTMR14	64419	broad.mit.edu	37	3	9719742	9719742	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:9719742G>A	uc003brz.2	+	9	1021	c.897G>A	c.(895-897)CAG>CAA	p.Q299Q	MTMR14_uc003bsa.2_Silent_p.Q299Q|MTMR14_uc003bsb.2_Silent_p.Q299Q|MTMR14_uc011ath.1_Intron|MTMR14_uc010hcl.2_Intron|MTMR14_uc003bsc.2_RNA	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	299						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					GCCAGTATCAGGTGAGGGGCC	0.552000													7	33					0	0	0.000274275	0	0
BRPF1	7862	broad.mit.edu	37	3	9785987	9785987	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:9785987G>A	uc003bse.2	+	9	3096	c.2697G>A	c.(2695-2697)CCG>CCA	p.P899P	BRPF1_uc003bsf.2_Silent_p.P905P|BRPF1_uc003bsg.2_Silent_p.P898P|BRPF1_uc011ati.1_Intron	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	899	Required for RUNX1 and RUNX2 transcriptional activation.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					AAAAGAACCCGAAGACAGCTG	0.632000													12	32					0	0	0.000978159	0	0
SYN2	6854	broad.mit.edu	37	3	12183495	12183495	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:12183495C>T	uc003bwm.2	+	7	690	c.526C>T	c.(526-528)CGG>TGG	p.R176W	SYN2_uc003bwl.1_Missense_Mutation_p.R176W	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	176					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AAAGGTTGTCCGGTAAGGGTC	0.493000													56	182					0	0	0.000781405	0	0
SCN11A	11280	broad.mit.edu	37	3	38888526	38888526	+	Missense_Mutation	SNP	G	A	A	rs143537709		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:38888526G>A	uc011ays.1	-	26	5234	c.5035C>T	c.(5035-5037)CGC>TGC	p.R1679C		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1679					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity	p.R1679C(1)		skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAGTGGAGGCGATCTTCACTC	0.463000													11	43					0	0	0.000673444	0	0
ABHD5	51099	broad.mit.edu	37	3	43753208	43753208	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:43753208C>T	uc003cmx.2	+	4	624	c.514C>T	c.(514-516)CAT>TAT	p.H172Y		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	172					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		CAGGGTTAATCATCTCATTTT	0.393000													7	47					0	0	0.00198382	0	0
PRSS45	377047	broad.mit.edu	37	3	46784046	46784046	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:46784046C>T	uc010hjl.2	-	4	481	c.481G>A	c.(481-483)GAA>AAA	p.E161K	PRSS45_uc011bam.1_RNA	NM_199183	NP_954652	Q7RTY3	PRS45_HUMAN	testis serine protease 5	193	Peptidase S1.				proteolysis		serine-type endopeptidase activity				0						CCCTCAACTTCACAAGCCAAT	0.582000													10	42					0	0	0.000978159	0	0
GNAI2	2771	broad.mit.edu	37	3	50290554	50290554	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:50290554C>T	uc003cyq.1	+	4	523	c.402C>T	c.(400-402)GAC>GAT	p.D134D	GNAI2_uc003cyo.1_Silent_p.D118D|GNAI2_uc003cyp.1_Silent_p.D118D|GNAI2_uc010hlg.1_Silent_p.D53D|GNAI2_uc011bdn.1_Silent_p.D97D|GNAI2_uc003cyr.1_Silent_p.D53D	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	134					adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		TCTGGGCTGACCATGGTGTGC	0.647000													16	114					0	0	0.000958276	0	0
NISCH	11188	broad.mit.edu	37	3	52526445	52526445	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:52526445C>T	uc011beg.1	+	22	4534	c.4462C>T	c.(4462-4464)CGC>TGC	p.R1488C	NISCH_uc003ded.3_Missense_Mutation_p.R1488C|NISCH_uc003dee.3_Missense_Mutation_p.R977C|NISCH_uc003deg.1_Intron|NISCH_uc003deh.3_Missense_Mutation_p.R237C|STAB1_uc003dei.1_5'Flank|STAB1_uc003dej.2_5'Flank	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1488					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		GCTGTTGGCTCGCCAGTGGGA	0.667000													8	37					0	0	0.000274275	0	0
FOXP1	27086	broad.mit.edu	37	3	71037191	71037191	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:71037191G>C	uc003dol.2	-	10	1423	c.1100C>G	c.(1099-1101)ACC>AGC	p.T367S	FOXP1_uc003dom.2_Missense_Mutation_p.T291S|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Missense_Mutation_p.T367S|FOXP1_uc003dop.2_Missense_Mutation_p.T367S|FOXP1_uc003doq.1_Missense_Mutation_p.T366S|FOXP1_uc003doi.2_Missense_Mutation_p.T267S|FOXP1_uc003doj.2_Missense_Mutation_p.T267S|FOXP1_uc003dok.2_Missense_Mutation_p.T180S|FOXP1_uc003dor.1_Missense_Mutation_p.T145S	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	367	Leucine-zipper.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		ATGCAGGTGGGTCATCATGGC	0.438000			T	PAX5	ALL								4	172					0	0	0.00116845	0	0
CNTN3	5067	broad.mit.edu	37	3	74350824	74350824	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:74350824G>A	uc003dpm.1	-	14	1999	c.1919C>T	c.(1918-1920)TCC>TTC	p.S640F		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	640	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		CCAACCCACGGAGAAAGGTGT	0.453000													7	30					0	0	0.000157383	0	0
CADM2	253559	broad.mit.edu	37	3	86028334	86028334	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:86028334C>T	uc003dqj.2	+	8	1590	c.964C>T	c.(964-966)CCC>TCC	p.P322S	CADM2_uc003dqk.2_Intron|CADM2_uc003dql.2_Missense_Mutation_p.P324S	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	322	Thr-rich.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CACTTTGCTTCCCACTACTAT	0.403000													23	88					0	0	0.000878237	0	0
STXBP5L	9515	broad.mit.edu	37	3	120941953	120941953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:120941953G>A	uc003eec.3	+	11	1200	c.1060G>A	c.(1060-1062)GAT>AAT	p.D354N	STXBP5L_uc011bji.1_Missense_Mutation_p.D354N	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	354					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ACTTGAAATGGATCATCCTAT	0.333000													19	46					0	0	0.000958276	0	0
FBXO40	51725	broad.mit.edu	37	3	121345715	121345715	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:121345715C>T	uc003eeg.2	+	4	2298	c.2088C>T	c.(2086-2088)GTC>GTT	p.V696V		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	696					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AGAGCTTAGTCTCCACCTTTA	0.478000													6	39					0	0	0.00198382	0	0
GOLGB1	2804	broad.mit.edu	37	3	121410904	121410904	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:121410904T>C	uc003eei.3	-	14	7418	c.7292A>G	c.(7291-7293)AAC>AGC	p.N2431S	GOLGB1_uc010hrc.2_Missense_Mutation_p.N2436S|GOLGB1_uc003eej.3_Missense_Mutation_p.N2397S	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2431	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		AGCCTTTTTGTTCTCCTCTTC	0.383000													14	71					0	0	0.000308642	0	0
CASR	846	broad.mit.edu	37	3	122002676	122002676	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:122002676C>T	uc003eev.3	+	7	2247	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	CASR_uc003eew.3_Silent_p.F635F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	625	Helical; Name=1; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGGCATTTTCCTGACAGCCT	0.552000													10	32					0	0	0.000673444	0	0
TF	7018	broad.mit.edu	37	3	133497452	133497452	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:133497452C>T	uc003epu.1	+	22	3813	c.2085C>T	c.(2083-2085)TTC>TTT	p.F695F	TF_uc011blt.1_Silent_p.F568F|TF_uc003epw.1_Silent_p.F134F|TF_uc003epv.1_Silent_p.F695F	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	695					cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	CCTGCACTTTCCGTAGACCTT	0.463000													5	29					0	0	0.000602214	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133664076	133664076	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:133664076G>A	uc003eqa.3	-	10	1598	c.1324C>T	c.(1324-1326)CCT>TCT	p.P442S	SLCO2A1_uc003eqb.3_Missense_Mutation_p.P366S|SLCO2A1_uc011blv.1_Missense_Mutation_p.P261S	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	442	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CGGCAGGCAGGAGACTGCGGA	0.542000													24	123					0	0	0.00047179	0	0
C3orf57	165679	broad.mit.edu	37	3	161063940	161063940	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:161063940G>A	uc003fee.2	-	3	946	c.172C>T	c.(172-174)CGC>TGC	p.R58C		NM_001040100	NP_001035189	Q8NFR3	SSPTB_HUMAN	ADMP	58	Cytoplasmic (Potential).				sphingolipid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	protein binding				0			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			CAAGCCAGGCGAATGTGGATT	0.368000													6	30					0	0	0.00198382	0	0
FAM131A	131408	broad.mit.edu	37	3	184062315	184062315	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:184062315C>T	uc003fog.2	+	3	1929	c.565C>T	c.(565-567)CTC>TTC	p.L189F	FAM131A_uc003fob.1_Missense_Mutation_p.L97F|FAM131A_uc003foc.2_Missense_Mutation_p.L135F|FAM131A_uc003foe.2_Missense_Mutation_p.L135F	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	189						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGGGCCGCACCTCCAGGACCT	0.632000													14	66					0	0	0.000422831	0	0
KNG1	3827	broad.mit.edu	37	3	186435389	186435389	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr3:186435389G>A	uc011bsa.1	+	1	270	c.58G>A	c.(58-60)GAA>AAA	p.E20K	KNG1_uc003fqr.2_Missense_Mutation_p.E20K	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	20	Cystatin 1.				blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	TTTAACCCAGGAATCACAGTC	0.413000													12	42					0	0	0.00185496	0	0
ZNF518B	85460	broad.mit.edu	37	4	10445211	10445211	+	Silent	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:10445211A>G	uc003gmn.2	-	3	3229	c.2742T>C	c.(2740-2742)CCT>CCC	p.P914P		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	914					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						GAAAAATTGAAGGATCCTTGA	0.413000													3	63					0	0	0.00024832	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444230	15444230	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:15444230G>A	uc011bxb.1	+	3	904	c.677G>A	c.(676-678)GGA>GAA	p.G226E	C1QTNF7_uc003gno.2_Missense_Mutation_p.G233E|C1QTNF7_uc003gnp.2_Missense_Mutation_p.G226E	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	226	C1q.					collagen					0						GCCAACACAGGAAACCATGAT	0.458000													17	47					0	0	0.00074312	0	0
GABRG1	2565	broad.mit.edu	37	4	46067417	46067417	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:46067417C>T	uc003gxb.2	-	4	658	c.506G>A	c.(505-507)CGA>CAA	p.R169Q		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	169	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		ATTCCAAATTCGAAGCAGACG	0.323000													7	24					0	0	0.000442599	0	0
UGT2A3	79799	broad.mit.edu	37	4	69811058	69811058	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:69811058C>T	uc003hef.2	-	2	861	c.830G>A	c.(829-831)GGA>GAA	p.G277E	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	277	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ACAGTGCAATCCTCCAACAAA	0.363000													9	28					0	0	0.000673444	0	0
PTPN13	5783	broad.mit.edu	37	4	87696665	87696665	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:87696665C>T	uc003hpz.2	+	35	6231	c.5751C>T	c.(5749-5751)TCC>TCT	p.S1917S	PTPN13_uc003hpy.2_Silent_p.S1922S|PTPN13_uc003hqa.2_Silent_p.S1898S|PTPN13_uc003hqb.2_Silent_p.S1726S|PTPN13_uc003hqc.1_Silent_p.S283S	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1917	PDZ 5.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		ATCCAAGGTCCGTCGCAGCCA	0.388000													6	9					0	0	0.00116845	0	0
FAM13A	10144	broad.mit.edu	37	4	89653209	89653209	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:89653209T>A	uc003hse.1	-	22	2995	c.2787A>T	c.(2785-2787)AAA>AAT	p.K929N	FAM13A_uc011cdp.1_Missense_Mutation_p.K31N|FAM13A_uc003hsa.1_Missense_Mutation_p.K372N|FAM13A_uc003hsb.1_Missense_Mutation_p.K603N|FAM13A_uc003hsd.1_Missense_Mutation_p.K575N|FAM13A_uc003hsc.1_Missense_Mutation_p.K589N|FAM13A_uc011cdq.1_Missense_Mutation_p.K575N|FAM13A_uc003hsf.1_Missense_Mutation_p.K515N|FAM13A_uc003hsg.1_Missense_Mutation_p.K372N	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	929					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						TTGATGGTATTTTATCATCCA	0.418000													12	22					0	0	0.00136819	0	0
GRID2	2895	broad.mit.edu	37	4	94436421	94436421	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:94436421C>T	uc011cdt.1	+	13	2310	c.2052C>T	c.(2050-2052)GAC>GAT	p.D684D	GRID2_uc011cdu.1_Silent_p.D589D	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	684	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CAGTCCTAGACTCTGCGGTAT	0.463000													5	14					0	0	0.000602214	0	0
PCDH18	54510	broad.mit.edu	37	4	138451778	138451778	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:138451778C>T	uc003ihe.3	-	1	1852	c.1465G>A	c.(1465-1467)GCC>ACC	p.A489T	PCDH18_uc003ihf.3_Missense_Mutation_p.A482T|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.A269T|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	489	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGATCTGTGGCTGTAACAGTG	0.403000													20	69					0	0	0.000958276	0	0
GRIA2	2891	broad.mit.edu	37	4	158242620	158242620	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:158242620C>T	uc003ipm.3	+	6	1210	c.751C>T	c.(751-753)CAG>TAG	p.Q251*	GRIA2_uc011cit.1_Nonsense_Mutation_p.Q204*|GRIA2_uc003ipl.3_Nonsense_Mutation_p.Q251*|GRIA2_uc003ipk.3_Nonsense_Mutation_p.Q204*|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	251	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ATTAAAAATCCAGTTTGGAGG	0.333000													17	50					0	0	0.00152264	0	0
TLL1	7092	broad.mit.edu	37	4	166996152	166996152	+	Missense_Mutation	SNP	G	A	A	rs34702625		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:166996152G>A	uc003irh.1	+	17	2958	c.2311G>A	c.(2311-2313)GAA>AAA	p.E771K	TLL1_uc011cjn.1_Missense_Mutation_p.E794K|TLL1_uc011cjo.1_Missense_Mutation_p.E595K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	771					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGATTGCAAGGAAGGTATGGA	0.398000													14	44					0	0	0.000566183	0	0
DDX60L	91351	broad.mit.edu	37	4	169315758	169315758	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr4:169315758C>T	uc003irq.3	-	28	3889	c.3668G>A	c.(3667-3669)AGG>AAG	p.R1223K	DDX60L_uc003irr.1_Missense_Mutation_p.R1224K	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1223	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CGGTAATACCCTCTCCAAAGT	0.358000													11	25					0	0	0.00185496	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5209252	5209252	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:5209252G>A	uc003jdl.2	+	10	1636	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E500K|ADAMTS16_uc003jdj.1_Missense_Mutation_p.E500K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	500	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						GCCTGTGAAGGAATACAAGTA	0.468000													25	69					0	0	0.00047179	0	0
DNAH5	1767	broad.mit.edu	37	5	13814881	13814881	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:13814881C>T	uc003jfd.2	-	43	7105	c.7063G>A	c.(7063-7065)GAT>AAT	p.D2355N		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2355	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTTTGTTATCATCCAAAACA	0.373000									Kartagener_syndrome				19	38					0	0	0.00121646	0	0
IL7R	3575	broad.mit.edu	37	5	35867477	35867477	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:35867477G>A	uc003jjs.2	+	3	380	c.291G>A	c.(289-291)AAG>AAA	p.K97K	IL7R_uc011coo.1_Silent_p.K97K|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	97	Extracellular (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TCGAGACAAAGAAATTCTTAC	0.378000													14	31					0	0	0.00244969	0	0
OSMR	9180	broad.mit.edu	37	5	38919026	38919026	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:38919026C>T	uc003jln.1	+	11	1814	c.1447C>T	c.(1447-1449)CTC>TTC	p.L483F	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	483	Fibronectin type-III 2.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CAGTTCAGAGCTCCATTCCAT	0.423000													10	27					0	0	0.000673444	0	0
C6	729	broad.mit.edu	37	5	41186273	41186273	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:41186273G>A	uc003jmk.2	-	6	835	c.625C>T	c.(625-627)CTT>TTT	p.L209F	C6_uc003jml.1_Missense_Mutation_p.L209F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	209	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GAGTTATCAAGGACTTCTCCT	0.388000													4	29					0	0	0.000602214	0	0
ENC1	8507	broad.mit.edu	37	5	73931223	73931223	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:73931223G>A	uc003kdc.3	-	2	2219	c.1088C>T	c.(1087-1089)ACC>ATC	p.T363I	ENC1_uc011css.1_Missense_Mutation_p.T290I	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	363	Kelch 2.				nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		CTCGTGCAGGGTATCATAAAC	0.547000													8	27					0	0	0.000157383	0	0
PDE8B	8622	broad.mit.edu	37	5	76633115	76633115	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:76633115G>A	uc003kfa.2	+	6	817	c.772G>A	c.(772-774)GAA>AAA	p.E258K	PDE8B_uc003kfb.2_Missense_Mutation_p.E238K|PDE8B_uc003kfc.2_Missense_Mutation_p.E258K|PDE8B_uc003kfd.2_Missense_Mutation_p.E258K|PDE8B_uc003kfe.2_Missense_Mutation_p.E258K	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	258					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		AGAACATGGGGAAGTTCGCTC	0.333000													40	187					0	0	0.000781405	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101813566	101813566	+	Splice_Site	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:101813566C>T	uc003knn.2	-	3	789	c.617_splice	c.e3-1	p.D206_splice	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Splice_Site_p.D206_splice|SLCO6A1_uc003knq.2_Intron	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,							integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TCGCAAATATCTTTTGAAAAT	0.308000													17	57					0	0	0.000422831	0	0
MEGF10	84466	broad.mit.edu	37	5	126755745	126755745	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:126755745G>A	uc003kuh.3	+	13	1798	c.1436G>A	c.(1435-1437)GGG>GAG	p.G479E	MEGF10_uc010jdc.1_Missense_Mutation_p.G479E|MEGF10_uc010jdd.1_Missense_Mutation_p.G479E|MEGF10_uc003kui.3_Missense_Mutation_p.G479E	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	479	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.|EGF-like 8.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		GGCTGGCACGGGGTGGACTGC	0.572000													7	19					0	0	0.000157383	0	0
FBN2	2201	broad.mit.edu	37	5	127800563	127800563	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:127800563C>T	uc003kuu.2	-	6	1119	c.680G>A	c.(679-681)GGG>GAG	p.G227E	FBN2_uc003kuv.2_Missense_Mutation_p.G194E|FBN2_uc003kuw.3_Missense_Mutation_p.G227E|FBN2_uc003kux.1_Missense_Mutation_p.G227E	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	227	TB 1.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TGTCAGCTGCCCTTGGCACAT	0.532000													15	30					0	0	0.000422831	0	0
AFF4	27125	broad.mit.edu	37	5	132238168	132238168	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:132238168G>A	uc003kyd.2	-	7	1507	c.1099C>T	c.(1099-1101)CCT>TCT	p.P367S	AFF4_uc011cxk.1_Missense_Mutation_p.P45S|AFF4_uc003kye.1_Missense_Mutation_p.P367S	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	367	Ser-rich.				transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GTTTTAGAAGGATTATATCTT	0.284000													15	30					0	0	0.00074312	0	0
SPINK5	11005	broad.mit.edu	37	5	147498040	147498040	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:147498040G>C	uc003lox.2	+	23	2226	c.2153G>C	c.(2152-2154)AGA>ACA	p.R718T	SPINK5_uc010jgs.1_Missense_Mutation_p.R690T|SPINK5_uc010jgr.2_Missense_Mutation_p.R699T|SPINK5_uc003low.2_Missense_Mutation_p.R718T|SPINK5_uc003loy.2_Missense_Mutation_p.R718T	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	718	Kazal-like 11.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAATGGAAGACTCAGCTGT	0.408000													14	50					0	0	0.00185496	0	0
DCTN4	51164	broad.mit.edu	37	5	150090912	150090912	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:150090912G>A	uc003lsv.2	-	13	1284	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	DCTN4_uc003lsu.2_Silent_p.F337F|DCTN4_uc010jhi.2_Silent_p.F401F	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	394						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGGCCTTTCTGAAGGCTATAA	0.373000													16	24					0	0	0.000308642	0	0
SGCD	6444	broad.mit.edu	37	5	156184689	156184689	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:156184689C>T	uc003lwd.3	+	7	1146	c.670C>T	c.(670-672)CTG>TTG	p.L224L	SGCD_uc003lwb.2_Silent_p.L225L|SGCD_uc003lwc.3_Silent_p.L225L	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	224	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAGGACAGAGCTGAGACTGGA	0.522000													19	98					0	0	0.00152264	0	0
BTNL8	79908	broad.mit.edu	37	5	180377220	180377220	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr5:180377220C>T	uc003mmp.2	+	8	1413	c.1179C>T	c.(1177-1179)CCC>CCT	p.P393P	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Silent_p.P268P|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Silent_p.P277P|BTNL8_uc011dhh.1_Silent_p.P209P	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	393	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATTAAATCCCCGTTTTATCA	0.468000													11	14					0	0	0.000673444	0	0
SYCP2L	221711	broad.mit.edu	37	6	10898272	10898272	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:10898272G>A	uc003mzo.2	+	5	661	c.365G>A	c.(364-366)GGA>GAA	p.G122E	SYCP2L_uc011din.1_5'UTR|SYCP2L_uc010jow.2_5'UTR	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	122						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			AGAACAACAGGAATTCTGACC	0.418000													17	35					0	0	0.00074312	0	0
GPX6	257202	broad.mit.edu	37	6	28473580	28473580	+	Splice_Site	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:28473580C>T	uc011dlj.1	-	5	410	c.360_splice	c.e5-1	p.K120_splice	GPX6_uc010jrg.1_Intron	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor						response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	ACACACATACCTGCAGTGAAC	0.423000													7	34					0	0	0.000442599	0	0
SCAND3	114821	broad.mit.edu	37	6	28542979	28542979	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:28542979G>A	uc003nlo.2	-	3	2121	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	501	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACATCTGAATGAACCACAAAA	0.433000													14	57					0	0	0.000308642	0	0
OR2J3	442186	broad.mit.edu	37	6	29080214	29080214	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:29080214G>A	uc011dll.1	+	1	547	c.547G>A	c.(547-549)GAA>AAA	p.E183K		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTTTTCTGTGAAGTTCCAGC	0.463000													12	37					0	0	0.00136819	0	0
MOG	4340	broad.mit.edu	37	6	29627155	29627155	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:29627155G>A	uc003nnf.2	+	2	326	c.148G>A	c.(148-150)GAA>AAA	p.E50K	MOG_uc003qzk.1_Missense_Mutation_p.E50K|MOG_uc010kle.1_Intron|MOG_uc010klf.1_Intron|MOG_uc003nmy.1_Missense_Mutation_p.E50K|MOG_uc003nmz.2_Missense_Mutation_p.E50K|MOG_uc011dlt.1_5'UTR|MOG_uc003nna.2_Intron|MOG_uc011dlu.1_Intron|MOG_uc011dlv.1_Intron|MOG_uc003nnd.2_Missense_Mutation_p.E50K|MOG_uc003nne.2_Missense_Mutation_p.E50K|MOG_uc003nng.2_Missense_Mutation_p.E50K|MOG_uc003nnh.2_Missense_Mutation_p.E50K|MOG_uc003nni.2_Missense_Mutation_p.E50K|MOG_uc003nnj.2_Missense_Mutation_p.E50K|MOG_uc003nnk.2_Missense_Mutation_p.E50K	NM_206809	NP_996532	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein isoform	50	Ig-like V-type.|Extracellular (Potential).				cell adhesion|central nervous system development|positive regulation of MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)	1						GGATGAAGTGGAATTGCCATG	0.542000													21	105					0	0	0.00188189	0	0
CDSN	1041	broad.mit.edu	37	6	31084733	31084733	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:31084733G>A	uc003nsm.1	-	2	686	c.659C>T	c.(658-660)TCG>TTG	p.S220L	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	220	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						GGGGATGTCCGAACTACAGGG	0.617000													11	29					0	0	0.000978159	0	0
SLC26A8	116369	broad.mit.edu	37	6	35912096	35912096	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:35912096T>C	uc003olm.2	-	20	2605	c.2494A>G	c.(2494-2496)ATG>GTG	p.M832V	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.M414V|SLC26A8_uc003oln.2_Missense_Mutation_p.M832V|SLC26A8_uc003oll.2_Missense_Mutation_p.M727V	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	832	Interaction with RACGAP1.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTGCTGCTCATTTTATATCTT	0.308000													8	39					0	0	0.000274275	0	0
TREML2	79865	broad.mit.edu	37	6	41166074	41166074	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:41166074A>C	uc010jxm.1	-	2	328	c.149T>G	c.(148-150)GTG>GGG	p.V50G		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	50	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTTGCCCTCCACGCGGTTTTT	0.552000													24	108					0	0	0.000878237	0	0
VEGFA	7422	broad.mit.edu	37	6	43746213	43746213	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:43746213C>T	uc003owc.2	+	4	1363	c.332C>T	c.(331-333)CCT>CTT	p.P111L	VEGFA_uc003owd.2_Missense_Mutation_p.P291L|VEGFA_uc003owf.2_Missense_Mutation_p.P291L|VEGFA_uc003owe.2_Missense_Mutation_p.P291L|VEGFA_uc003owg.2_Missense_Mutation_p.P291L|VEGFA_uc003owh.2_Missense_Mutation_p.P291L|VEGFA_uc003owi.2_Missense_Mutation_p.P291L|VEGFA_uc003owj.2_Missense_Mutation_p.P291L|VEGFA_uc010jyx.2_Missense_Mutation_p.P111L|VEGFA_uc003owk.2_RNA	NM_001025370	NP_001020541	P15692	VEGFA_HUMAN	vascular endothelial growth factor A isoform f	111					basophil chemotaxis|cellular response to hypoxia|induction of positive chemotaxis|induction of positive chemotaxis|platelet activation|platelet degranulation|platelet-derived growth factor receptor signaling pathway|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cell adhesion|positive regulation of cell division|positive regulation of endothelial cell proliferation|positive regulation of leukocyte migration|positive regulation of mast cell chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|positive regulation of vascular permeability|regulation of cell shape|vascular endothelial growth factor receptor signaling pathway|vasculogenesis	cell surface|extracellular space|membrane|platelet alpha granule lumen	cell surface binding|chemoattractant activity|cytokine activity|fibronectin binding|growth factor activity|heparin binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity|vascular endothelial growth factor receptor 1 binding|vascular endothelial growth factor receptor 2 binding|vascular endothelial growth factor receptor binding			ovary(1)|breast(1)	2	all_cancers(18;5.46e-07)|all_epithelial(2;5.96e-08)|Lung NSC(15;0.000157)|all_lung(25;0.000486)|Hepatocellular(11;0.00309)		all cancers(41;0.000413)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0742)|OV - Ovarian serous cystadenocarcinoma(102;0.196)		Atorvastatin(DB01076)|Bevacizumab(DB00112)|Carvedilol(DB01136)|Ginkgo biloba(DB01381)|Gliclazide(DB01120)|Minocycline(DB01017)|Ranibizumab(DB01270)|Simvastatin(DB00641)	CGGATCAAACCTCACCAAGGC	0.517000													4	12					0	0	0.000602214	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62611258	62611258	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:62611258G>A	uc003peg.2	-	5	749	c.502C>T	c.(502-504)CGT>TGT	p.R168C		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TGTTCCTGACGAATTTCATCA	0.403000													11	39					0	0	0.00136819	0	0
BAI3	577	broad.mit.edu	37	6	70071226	70071226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:70071226C>T	uc003pev.3	+	29	4509	c.4061C>T	c.(4060-4062)CCT>CTT	p.P1354L	BAI3_uc010kak.2_Missense_Mutation_p.P1354L|BAI3_uc011dxx.1_Missense_Mutation_p.P560L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1354	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ATGAATCCCCCTGTAATGGAC	0.413000													18	80					0	0	0.00074312	0	0
COL12A1	1303	broad.mit.edu	37	6	75801104	75801104	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:75801104C>T	uc003phs.2	-	62	8853	c.8687G>A	c.(8686-8688)GGA>GAA	p.G2896E	COL12A1_uc003pht.2_Missense_Mutation_p.G1732E	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2896	Cell attachment site (Potential).|Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGCAATGTCTCCCTTGTTGAA	0.299000													9	59					0	0	0.000442599	0	0
COL12A1	1303	broad.mit.edu	37	6	75839869	75839869	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:75839869C>T	uc003phs.2	-	37	6314	c.6148G>A	c.(6148-6150)GGG>AGG	p.G2050R	COL12A1_uc003pht.2_Missense_Mutation_p.G886R	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2050	Fibronectin type-III 16.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGAACTGGCCCATCAGCATGA	0.413000													7	37					0	0	0.00198382	0	0
ME1	4199	broad.mit.edu	37	6	84117513	84117513	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:84117513G>A	uc003pjy.2	-	2	292	c.186C>T	c.(184-186)TTC>TTT	p.F62F	ME1_uc011dzb.1_Intron|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	62					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCAGATGCTCGAAATTTTTTA	0.383000													18	71					0	0	0.00121646	0	0
HTR1E	3354	broad.mit.edu	37	6	87725331	87725331	+	Silent	SNP	C	T	T	rs143123336		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:87725331C>T	uc003pli.2	+	2	982	c.279C>T	c.(277-279)TTC>TTT	p.F93F		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	93	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TTGGGTACTTCCTCTGTGAGG	0.562000													9	56					0	0	0.000442599	0	0
MCHR2	84539	broad.mit.edu	37	6	100390896	100390896	+	Silent	SNP	C	T	T	rs140465249	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:100390896C>T	uc003pqh.1	-	4	831	c.516G>A	c.(514-516)TCG>TCA	p.S172S	MCHR2_uc003pqi.1_Silent_p.S172S	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	172	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		TGATGACCTTCGAGTAGACCC	0.448000													11	54					0	0	0.000673444	0	0
NR2E1	7101	broad.mit.edu	37	6	108497842	108497842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:108497842C>T	uc003psg.2	+	4	1150	c.395C>T	c.(394-396)ACC>ATC	p.T132I		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	132					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		GCCTTCTTCACCGCGGTCACG	0.701000													7	15					0	0	0.00198382	0	0
TUBE1	51175	broad.mit.edu	37	6	112393144	112393144	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:112393144C>A	uc003pvq.2	-	11	1344	c.1230G>T	c.(1228-1230)ATG>ATT	p.M410I	TUBE1_uc003pvr.2_Missense_Mutation_p.M335I	NM_016262	NP_057346	Q9UJT0	TBE_HUMAN	tubulin, epsilon 1	410					centrosome cycle|microtubule-based movement|protein polymerization	microtubule|pericentriolar material	GTP binding|GTPase activity|structural constituent of cytoskeleton			ovary(1)	1		all_cancers(87;0.0101)|all_hematologic(75;0.000258)|Colorectal(196;0.0466)|all_epithelial(87;0.1)		all cancers(137;0.0217)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0636)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		CTTTCAGTTCCATGAAGGTGG	0.393000													17	43					3.32936e-07	1.4066e-06	0.00074312	1	0
RSPH4A	345895	broad.mit.edu	37	6	116938278	116938278	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:116938278G>A	uc003pxe.2	+	1	637	c.492G>A	c.(490-492)AGG>AGA	p.R164R	RSPH4A_uc010kee.2_Silent_p.R164R	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	164					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						GTGGACGAAGGGACGTGAGCT	0.468000									Kartagener_syndrome				19	54					0	0	0.00188189	0	0
GPRC6A	222545	broad.mit.edu	37	6	117114181	117114181	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:117114181C>T	uc003pxj.1	-	6	1927	c.1905G>A	c.(1903-1905)GTG>GTA	p.V635V	GPRC6A_uc003pxk.1_Silent_p.V460V|GPRC6A_uc003pxl.1_Silent_p.V564V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	635	Helical; Name=2; (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AGAGAAGGATCACATAGCAGA	0.408000													9	39					0	0	0.000274275	0	0
FAM184A	79632	broad.mit.edu	37	6	119345462	119345462	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:119345462C>T	uc003pyj.2	-	2	1024	c.676G>A	c.(676-678)GAG>AAG	p.E226K	FAM184A_uc003pyk.3_Missense_Mutation_p.E106K|FAM184A_uc003pyl.3_Missense_Mutation_p.E106K	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	226	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GACTCCACCTCCATTCTGTGT	0.433000													7	39					0	0	0.000157383	0	0
PTPRK	5796	broad.mit.edu	37	6	128294823	128294823	+	Silent	SNP	C	T	T	rs138416879		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:128294823C>T	uc003qbk.2	-	28	4483	c.4116G>A	c.(4114-4116)ACG>ACA	p.T1372T	PTPRK_uc003qbj.2_Silent_p.T1373T|PTPRK_uc010kfc.2_Silent_p.T1379T|PTPRK_uc011ebu.1_Silent_p.T1395T	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1372	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AGTGGATAATCGTCCGGCCTT	0.483000													18	63					0	0	0.00152264	0	0
TAAR5	9038	broad.mit.edu	37	6	132910798	132910798	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:132910798C>T	uc003qdk.2	-	1	80	c.28G>A	c.(28-30)GAA>AAA	p.E10K		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	10	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		GGGTGCTCTTCAGCACCTTGG	0.493000													6	19					0	0	0.000157383	0	0
EYA4	2070	broad.mit.edu	37	6	133834097	133834097	+	Silent	SNP	G	A	A	rs138141986		TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:133834097G>A	uc003qec.3	+	16	1880	c.1422G>A	c.(1420-1422)GGG>GGA	p.G474G	EYA4_uc011ecq.1_Silent_p.G420G|EYA4_uc011ecr.1_Silent_p.G426G|EYA4_uc003qed.3_Silent_p.G474G|EYA4_uc003qee.3_Silent_p.G451G|EYA4_uc011ecs.1_Silent_p.G480G|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	474					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		TAAGAGGAGGGGTTGACTGGA	0.418000													4	17					0	0	0.00024832	0	0
MAP3K5	4217	broad.mit.edu	37	6	136888793	136888793	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:136888793C>T	uc003qhc.2	-	26	4098	c.3737G>A	c.(3736-3738)GGA>GAA	p.G1246E	MAP3K5_uc011edj.1_Missense_Mutation_p.G493E|MAP3K5_uc011edk.1_Missense_Mutation_p.G1092E	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1246					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TTTCATCCTTCCAAGCTGTAC	0.438000													6	20					0	0	0.00116845	0	0
SYNE1	23345	broad.mit.edu	37	6	152832162	152832162	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:152832162A>T	uc010kiw.2	-	7	988	c.386T>A	c.(385-387)ATT>AAT	p.I129N	SYNE1_uc003qot.3_Missense_Mutation_p.I136N|SYNE1_uc003qou.3_Missense_Mutation_p.I129N|SYNE1_uc010kjb.1_Missense_Mutation_p.I129N|SYNE1_uc003qpa.1_Missense_Mutation_p.I129N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	129	Actin-binding.|Cytoplasmic (Potential).|CH 1.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATATAGAATAATGGTCCACAT	0.383000										HNSCC(10;0.0054)			38	121					0	0	0.00222228	0	0
PARK2	5071	broad.mit.edu	37	6	161990439	161990439	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr6:161990439G>A	uc003qtx.3	-	8	1015	c.881C>T	c.(880-882)CCC>CTC	p.P294L	PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Missense_Mutation_p.P103L|PARK2_uc003qtw.3_Missense_Mutation_p.P103L|PARK2_uc003qty.3_Missense_Mutation_p.P266L|PARK2_uc003qtz.3_Missense_Mutation_p.P145L|PARK2_uc010kke.1_Missense_Mutation_p.P313L|PARK2_uc011egf.1_5'UTR	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	294					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		CAAGGAGTTGGGACAGCCAGC	0.428000													13	44					0	0	0.00244969	0	0
THSD7A	221981	broad.mit.edu	37	7	11676536	11676536	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:11676536C>T	uc003ssf.3	-	2	495	c.243G>A	c.(241-243)ACG>ACA	p.T81T		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	81	TSP type-1 1.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACACAGCCCTCGTTTGGATGC	0.458000										HNSCC(18;0.044)			10	51					0	0	0.00136819	0	0
HOXA2	3199	broad.mit.edu	37	7	27142096	27142096	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:27142096C>T	uc003syh.2	-	1	299	c.24G>A	c.(22-24)GAG>GAA	p.E8E		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	8						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TAAAACCAATCTCTCGCTCAA	0.502000													6	43					0	0	0.000157383	0	0
AQP1	358	broad.mit.edu	37	7	30961812	30961812	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:30961812C>T	uc003tbv.1	+	2	573	c.516C>T	c.(514-516)ATC>ATT	p.I172I	AQP1_uc011kac.1_Silent_p.I232I|AQP1_uc010kwf.1_Silent_p.I89I|AQP1_uc010kwg.1_Silent_p.I53I|AQP1_uc010kwh.1_Silent_p.I121I	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	172	Helical; Name=Helix 5.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	CCCTTGCCATCGGCCTCTCTG	0.682000													4	10					0	0	0.00024832	0	0
INHBA	3624	broad.mit.edu	37	7	41729722	41729722	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:41729722C>T	uc003thq.2	-	2	1042	c.807G>A	c.(805-807)GGG>GGA	p.G269G	INHBA_uc003thr.2_Silent_p.G269G	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	269					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						ccttctttttcccttccccct	0.358000										TSP Lung(11;0.080)			5	13					0	0	0.000602214	0	0
NPC1L1	29881	broad.mit.edu	37	7	44575876	44575876	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:44575876G>A	uc003tlb.2	-	4	1889	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	NPC1L1_uc003tlc.2_Silent_p.F611F|NPC1L1_uc011kbw.1_Silent_p.F611F|NPC1L1_uc003tld.2_Silent_p.F611F	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	611	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ACGTGACCTGGAACATGCCAG	0.642000													10	33					0	0	0.000978159	0	0
ABCA13	154664	broad.mit.edu	37	7	48259057	48259057	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:48259057G>A	uc003toq.2	+	4	419	c.394G>A	c.(394-396)GCA>ACA	p.A132T	ABCA13_uc003top.2_Missense_Mutation_p.A132T|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	132					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GATGGACAAGGCAAAAAACTT	0.428000													13	66					0	0	0.00244969	0	0
ZNF479	90827	broad.mit.edu	37	7	57187780	57187780	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:57187780A>C	uc010kzo.2	-	5	1613	c.1342T>G	c.(1342-1344)TTA>GTA	p.L448V		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	448	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			GTTGAGGATAAGCTAAAGGCT	0.438000													4	48					0	0	0.00024832	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73933883	73933883	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:73933883C>T	uc003uaq.2	+	6	1143	c.750C>T	c.(748-750)TCC>TCT	p.S250S	GTF2IRD1_uc010lbq.2_Silent_p.S282S|GTF2IRD1_uc003uap.2_Silent_p.S250S|GTF2IRD1_uc003uar.1_Silent_p.S250S	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	250						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CCGCCACCTCCTCCTCCATGG	0.672000													9	17					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82583809	82583809	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:82583809G>A	uc003uhx.2	-	5	6749	c.6460C>T	c.(6460-6462)CAA>TAA	p.Q2154*	PCLO_uc003uhv.2_Nonsense_Mutation_p.Q2154*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2085					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATTATCTCTTGAATTTCTCTT	0.408000													10	46					0	0	0.000978159	0	0
PCLO	27445	broad.mit.edu	37	7	82784661	82784661	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:82784661C>T	uc003uhx.2	-	2	1585	c.1296G>A	c.(1294-1296)AAG>AAA	p.K432K	PCLO_uc003uhv.2_Silent_p.K432K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCCCAGGTGCCTTAGCTGGAG	0.592000													21	74					0	0	0.00229938	0	0
CYP3A5	1577	broad.mit.edu	37	7	99272200	99272200	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:99272200C>T	uc003urq.2	-	3	261	c.174G>A	c.(172-174)TGG>TGA	p.W58*	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Nonsense_Mutation_p.W48*|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Nonsense_Mutation_p.W58*	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	58					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	TGTCAAATTTCCAGAGACCCT	0.398000													7	21					0	0	0.000157383	0	0
POT1	25913	broad.mit.edu	37	7	124469351	124469351	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:124469351G>A	uc003vlm.2	-	16	2152	c.1551C>T	c.(1549-1551)TCC>TCT	p.S517S	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Silent_p.S386S|POT1_uc003vln.2_Intron	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	517					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TATCAACCAGGGAATTTAGAT	0.308000													13	52					0	0	0.00185496	0	0
FLNC	2318	broad.mit.edu	37	7	128482328	128482328	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:128482328G>A	uc003vnz.3	+	14	2374	c.2165G>A	c.(2164-2166)GGC>GAC	p.G722D	FLNC_uc003voa.3_Missense_Mutation_p.G722D	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	722	Filamin 5.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ATCCCCAACGGCGACGGCACC	0.617000											OREG0018297	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	14					0	0	0.00116845	0	0
TRPV5	56302	broad.mit.edu	37	7	142612698	142612698	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:142612698C>T	uc003wby.1	-	9	1427	c.1163G>A	c.(1162-1164)GGG>GAG	p.G388E		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	388	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CACCAGCTCCCCCACCAGCCT	0.542000													3	6					0	0	0.00024832	0	0
OR2A25	392138	broad.mit.edu	37	7	143771522	143771522	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:143771522C>T	uc011ktx.1	+	1	210	c.210C>T	c.(208-210)ATC>ATT	p.I70I		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TCGTCGACATCGCCTGTGCTT	0.572000													8	24					0	0	0.000673444	0	0
TPK1	27010	broad.mit.edu	37	7	144245645	144245645	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:144245645G>A	uc003weq.2	-	8	655	c.552C>T	c.(550-552)GGC>GGT	p.G184G	TPK1_uc003weo.2_Silent_p.G130G|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Silent_p.G135G|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	184					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	CAGGAATAAGGCCACACCAAT	0.428000													22	61					0	0	0.000720815	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080748	148080748	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:148080748G>A	uc003weu.1	+	22	3999	c.3483G>A	c.(3481-3483)GGG>GGA	p.G1161G	CNTNAP2_uc003wev.1_5'UTR	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1161	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TAGAAACAGGGAAAATTGACC	0.433000										HNSCC(39;0.1)			10	26					0	0	0.000978159	0	0
GIMAP6	474344	broad.mit.edu	37	7	150324854	150324854	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:150324854C>T	uc003whn.2	-	3	1256	c.832G>A	c.(832-834)GAA>AAA	p.E278K	GIMAP6_uc003whm.2_Missense_Mutation_p.E198K	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	278							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCTCAGATTCCTTCTGGATC	0.572000													9	36					0	0	0.00136819	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389911	150389911	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:150389911C>T	uc003who.2	+	3	625	c.537C>T	c.(535-537)ATC>ATT	p.I179I	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	179						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGGGCGAATCTGTGCCTTTA	0.483000													9	34					0	0	0.000673444	0	0
TMEM176A	55365	broad.mit.edu	37	7	150499314	150499314	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:150499314C>T	uc003whx.1	+	3	264	c.186C>T	c.(184-186)ATC>ATT	p.I62I	TMEM176B_uc003whu.3_5'Flank|TMEM176B_uc003whv.3_5'Flank|TMEM176B_uc003whw.3_5'Flank	NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	62	Helical; (Potential).					integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGATGCAGATCGTGCTGGGGA	0.562000													7	38					0	0	0.000442599	0	0
TMEM176A	55365	broad.mit.edu	37	7	150501930	150501930	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:150501930G>A	uc003whx.1	+	7	760	c.682G>A	c.(682-684)GAA>AAA	p.E228K		NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	228						integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGACCAGAAGGAAATGTTGGA	0.522000													11	47					0	0	0.00185496	0	0
HTR5A	3361	broad.mit.edu	37	7	154876080	154876080	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr7:154876080G>A	uc003wlu.1	+	2	1021	c.957G>A	c.(955-957)TGG>TGA	p.W319*		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	319	Extracellular (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CCGCCATCTGGAAAAGCATCT	0.522000													22	70					0	0	0.00229938	0	0
SLC18A1	6570	broad.mit.edu	37	8	20031896	20031896	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:20031896C>T	uc011kyq.1	-	6	1078	c.607G>A	c.(607-609)GGA>AGA	p.G203R	SLC18A1_uc003wzl.2_5'Flank|SLC18A1_uc003wzm.2_Missense_Mutation_p.G203R|SLC18A1_uc011kyr.1_Missense_Mutation_p.G203R|SLC18A1_uc003wzn.2_Missense_Mutation_p.G203R|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.G203R	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	203	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		AATGAAGATCCAATGCCTTGA	0.448000													4	37					0	0	0.00116845	0	0
KIAA1967	57805	broad.mit.edu	37	8	22464830	22464830	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:22464830C>T	uc003xch.2	+	6	616	c.479C>T	c.(478-480)CCT>CTT	p.P160L	KIAA1967_uc003xci.2_Missense_Mutation_p.P160L|KIAA1967_uc003xcj.1_5'UTR	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	160					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CCACTCTTTCCTCAGAAGCGT	0.542000													9	31					0	0	0.000978159	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38205261	38205261	+	Silent	SNP	C	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:38205261C>A	uc003xli.2	-	2	947	c.429G>T	c.(427-429)GTG>GTT	p.V143V	WHSC1L1_uc011lbm.1_Silent_p.V143V|WHSC1L1_uc010lwe.2_Silent_p.V143V|WHSC1L1_uc003xlj.2_Silent_p.V143V	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	143					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			TCTTTGGAATCACAGTTTGTG	0.413000			T	NUP98	AML								16	79					5.35267e-07	2.25612e-06	0.000958276	1	0
ADAM2	2515	broad.mit.edu	37	8	39694659	39694659	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:39694659G>A	uc003xnj.2	-	2	203	c.128C>T	c.(127-129)TCG>TTG	p.S43L	ADAM2_uc003xnk.2_Missense_Mutation_p.S43L|ADAM2_uc011lck.1_Missense_Mutation_p.S43L|ADAM2_uc003xnl.2_Missense_Mutation_p.S43L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	43					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CATTACCTGCGATTCAATTCC	0.303000													9	48					0	0	0.000673444	0	0
IKBKB	3551	broad.mit.edu	37	8	42174317	42174317	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:42174317C>T	uc003xow.1	+	11	1197	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	IKBKB_uc003xov.2_Silent_p.I340I|IKBKB_uc010lxh.1_Silent_p.I235I|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Silent_p.I117I|IKBKB_uc003xox.1_Silent_p.I61I|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Silent_p.I338I|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Silent_p.I281I	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	340					anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	AGGCCAGAATCCAACAGGACA	0.562000													6	20					0	0	0.000274275	0	0
CYP7A1	1581	broad.mit.edu	37	8	59410911	59410911	+	Silent	SNP	A	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:59410911A>T	uc003xtm.3	-	2	261	c.198T>A	c.(196-198)GTT>GTA	p.V66V		NM_000780	NP_000771	P22680	CP7A1_HUMAN	cytochrome P450, family 7, subfamily A,	66					bile acid biosynthetic process|cellular lipid metabolic process|cellular response to cholesterol|cellular response to glucose stimulus|cholesterol catabolic process|cholesterol homeostasis|regulation of bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	cholesterol 7-alpha-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)				TGCAGGTAAAAACATGACCAT	0.388000									Neonatal_Giant_Cell_Hepatitis				14	65					0	0	0.000422831	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66988913	66988913	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:66988913C>T	uc003xvs.1	+	4	429	c.138C>T	c.(136-138)CAC>CAT	p.H46H	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	46	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			CCCTGAAACACCATCCAGACA	0.378000													18	80					0	0	0.00121646	0	0
RGS22	26166	broad.mit.edu	37	8	101014533	101014533	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:101014533C>T	uc003yjb.1	-	18	2882	c.2687G>A	c.(2686-2688)CGA>CAA	p.R896Q	RGS22_uc003yja.1_Missense_Mutation_p.R715Q|RGS22_uc003yjc.1_Missense_Mutation_p.R884Q|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	896	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CCTTTGATTTCGATCTCTGTA	0.338000													5	32					0	0	0.000602214	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814304	106814304	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:106814304G>A	uc003ymd.2	+	8	2017	c.1994G>A	c.(1993-1995)GGA>GAA	p.G665E	ZFPM2_uc011lhs.1_Missense_Mutation_p.G396E	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	665					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAAATTAATGGAAAACCTGTT	0.433000													7	18					0	0	0.000157383	0	0
ANGPT1	284	broad.mit.edu	37	8	108296931	108296931	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:108296931C>T	uc003ymn.2	-	7	1652	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E	ANGPT1_uc011lhv.1_Missense_Mutation_p.G195E|ANGPT1_uc003ymo.2_Missense_Mutation_p.G394E|ANGPT1_uc003ymp.3_Missense_Mutation_p.G194E	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	395	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CTTTTCATTTCCTATGTGGAA	0.378000													6	38					0	0	0.000157383	0	0
ZHX2	22882	broad.mit.edu	37	8	123965415	123965415	+	Silent	SNP	C	T	T	rs145887684	byFrequency	TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr8:123965415C>T	uc003ypk.1	+	3	2232	c.1665C>T	c.(1663-1665)ACC>ACT	p.T555T		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	555	Homeobox 3.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			CTTTTCCTACCCAAGCAGAAC	0.498000													9	33					0	0	0.000673444	0	0
DOCK8	81704	broad.mit.edu	37	9	332409	332409	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:332409C>T	uc003zgf.2	+	10	1168	c.1056C>T	c.(1054-1056)GTC>GTT	p.V352V	DOCK8_uc011lls.1_Silent_p.V352V|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Silent_p.V284V|DOCK8_uc003zgg.2_Silent_p.V284V|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	352	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TTGAAAAAGTCCTGCAGCAGG	0.279000													5	9					0	0	0.00116845	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18657720	18657720	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:18657720C>T	uc003zne.3	+	8	1045	c.918C>T	c.(916-918)TTC>TTT	p.F306F	ADAMTSL1_uc003znb.2_Silent_p.F306F|ADAMTSL1_uc003znc.3_Silent_p.F306F	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	306						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		AGACGGATTTCTTTCCTTGCT	0.468000													12	22					0	0	0.00244969	0	0
C9orf131	138724	broad.mit.edu	37	9	35043926	35043926	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:35043926A>G	uc003zvw.2	+	2	1329	c.1300A>G	c.(1300-1302)AAC>GAC	p.N434D	C9orf131_uc003zvu.2_Missense_Mutation_p.N386D|C9orf131_uc003zvv.2_Missense_Mutation_p.N361D|C9orf131_uc003zvx.2_Missense_Mutation_p.N399D	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	434											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			CTTGGACCTCAACCCAGAGCT	0.507000													13	35					0	0	0.000308642	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321797	79321797	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:79321797A>G	uc010mpk.2	-	8	5517	c.5393T>C	c.(5392-5394)GTT>GCT	p.V1798A	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1798					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TTGCCATGCAACATCTCCTGT	0.463000													8	18					0	0	0.000157383	0	0
ECM2	1842	broad.mit.edu	37	9	95277165	95277165	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:95277165C>T	uc004ash.2	-	4	867	c.802G>A	c.(802-804)GGA>AGA	p.G268R	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.G246R|ECM2_uc011lty.1_Missense_Mutation_p.G268R|ECM2_uc004asg.2_Missense_Mutation_p.G246R	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	268					cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						tcctccCTTCCTTGGCGTTGT	0.378000													15	83					0	0	0.000422831	0	0
OR2K2	26248	broad.mit.edu	37	9	114089805	114089805	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:114089805C>G	uc011lwp.1	-	1	909	c.909G>C	c.(907-909)TTG>TTC	p.L303F		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	332	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TTTTGCCCAGCAATTTCTTCA	0.413000													4	28					0	0	0.00024832	0	0
DBC1	1620	broad.mit.edu	37	9	121929936	121929936	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:121929936T>C	uc004bkc.2	-	8	2168	c.1712A>G	c.(1711-1713)CAT>CGT	p.H571R		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	571					cell cycle arrest|cell death	cytoplasm	protein binding	p.H571Y(1)		skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCCCTCCGAATGGCTCCCGCT	0.552000													12	16					0	0	0.00136819	0	0
PIP5KL1	138429	broad.mit.edu	37	9	130687530	130687530	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:130687530C>T	uc011mao.1	-	9	818	c.773G>A	c.(772-774)CGG>CAG	p.R258Q	PIP5KL1_uc004bsu.2_Missense_Mutation_p.R55Q	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	258	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						GAACCAGCTCCGCTGGGGCCC	0.423000													7	21					0	0	0.00198382	0	0
ADAMTSL2	9719	broad.mit.edu	37	9	136402628	136402628	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr9:136402628G>A	uc011mdl.1	+	3	749	c.192G>A	c.(190-192)GGG>GGA	p.G64G	ADAMTSL2_uc004cei.2_Silent_p.G64G	NM_001145320	NP_001138792	Q86TH1	ATL2_HUMAN	ADAMTS-like 2 precursor	64	TSP type-1 1.				negative regulation of transforming growth factor beta receptor signaling pathway	proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;9.31e-08)|Epithelial(140;6.62e-07)|all cancers(34;7.74e-06)		GCAGTTGCGGGGGTGGGGTGA	0.677000													12	28					0	0	0.00185496	0	0
MXRA5	25878	broad.mit.edu	37	X	3240995	3240995	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:3240995G>A	uc004crg.3	-	5	2888	c.2731C>T	c.(2731-2733)CCT>TCT	p.P911S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	911						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATAAGTGTAGGGGCTGCTGTC	0.483000													9	25					0	0	0.000442599	0	0
MXRA5	25878	broad.mit.edu	37	X	3242310	3242310	+	Silent	SNP	C	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:3242310C>G	uc004crg.3	-	5	1573	c.1416G>C	c.(1414-1416)CGG>CGC	p.R472R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	472						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGCTTCTGCCCCGAGCCTGCC	0.512000													3	53					0	0	0.00024832	0	0
CDKL5	6792	broad.mit.edu	37	X	18622217	18622217	+	Silent	SNP	G	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:18622217G>T	uc004cym.2	+	12	1426	c.1173G>T	c.(1171-1173)GGG>GGT	p.G391G	CDKL5_uc004cyn.2_Silent_p.G391G	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	391					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					GCCAGCCTGGGTCTACCAGCA	0.453000													21	20					4.96729e-08	2.10352e-07	0.00121646	1	0
DMD	1756	broad.mit.edu	37	X	32509577	32509577	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:32509577G>A	uc004dda.1	-	20	2683	c.2439C>T	c.(2437-2439)ATC>ATT	p.I813I	DMD_uc004dcz.2_Silent_p.I690I|DMD_uc004dcy.1_Silent_p.I809I|DMD_uc004ddb.1_Silent_p.I805I|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	813	Spectrin 4.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GGCAGAATTCGATCCACCGGC	0.403000													5	10					0	0	0.000602214	0	0
ZNF674	641339	broad.mit.edu	37	X	46359367	46359367	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:46359367A>G	uc004dgr.2	-	6	1884	c.1657T>C	c.(1657-1659)TAT>CAT	p.Y553H	ZNF674_uc011mlg.1_Missense_Mutation_p.Y547H	NM_001039891	NP_001034980	Q2M3X9	ZN674_HUMAN	zinc finger family member 674 isoform 1	553	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)	2						CTGCATTCATAAGGTTTCTCT	0.398000													4	6					0	0	0.000602214	0	0
ATP7A	538	broad.mit.edu	37	X	77254037	77254037	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:77254037A>G	uc004ecx.3	+	5	1559	c.1399A>G	c.(1399-1401)ACT>GCT	p.T467A	ATP7A_uc004ecw.2_Missense_Mutation_p.T467A	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	467	Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						TTTGACTTCAACTAATGAATT	0.408000													3	92					0	0	6.4e-05	0	0
DIAPH2	1730	broad.mit.edu	37	X	96136645	96136645	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:96136645C>T	uc004efu.3	+	5	911	c.515C>T	c.(514-516)TCG>TTG	p.S172L	DIAPH2_uc004eft.3_Missense_Mutation_p.S172L|DIAPH2_uc004efs.2_Missense_Mutation_p.S179L|RPA4_uc004efv.3_5'Flank	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	172	GBD/FH3.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						GAATTACGATCGGGTATATCA	0.383000													11	7					0	0	0.000978159	0	0
IL13RA2	3598	broad.mit.edu	37	X	114239877	114239877	+	Silent	SNP	A	C	C			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:114239877A>C	uc004epx.2	-	9	1124	c.999T>G	c.(997-999)GGT>GGG	p.G333G	IL13RA2_uc010nqd.1_Silent_p.G333G	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	333	Extracellular (Potential).|Fibronectin type-III 3.					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						ATAGGTCTTCACCTAGGATTA	0.348000													10	7					0	0	0.000673444	0	0
KLHL13	90293	broad.mit.edu	37	X	117032951	117032951	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:117032951G>A	uc004eql.2	-	7	1950	c.1888C>T	c.(1888-1890)CGT>TGT	p.R630C	KLHL13_uc004eqk.2_Missense_Mutation_p.R579C|KLHL13_uc011mtn.1_Missense_Mutation_p.R470C|KLHL13_uc011mto.1_Missense_Mutation_p.R624C|KLHL13_uc011mtp.1_Missense_Mutation_p.R632C|KLHL13_uc004eqm.2_Missense_Mutation_p.R579C|KLHL13_uc011mtq.1_Missense_Mutation_p.R614C	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	630	Kelch 6.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GTGCAAGCACGAATGCCACCA	0.418000													16	19					0	0	0.00074312	0	0
KIAA1210	57481	broad.mit.edu	37	X	118239003	118239003	+	Silent	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:118239003C>T	uc004era.3	-	7	1020	c.1020G>A	c.(1018-1020)AAG>AAA	p.K340K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	340										ovary(4)|skin(1)	5						TTTGTGGATTCTTAGGTGACT	0.453000													31	40					0	0	0.00283554	0	0
GPR119	139760	broad.mit.edu	37	X	129518464	129518464	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:129518464C>T	uc011muv.1	-	1	958	c.958G>A	c.(958-960)GAA>AAA	p.E320K		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	320	Cytoplasmic (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						CAGGAACTTTCCCTGGGCCTC	0.542000													17	21					0	0	0.00121646	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130220392	130220392	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:130220392G>A	uc004evz.2	+	10	1716	c.1371G>A	c.(1369-1371)AGG>AGA	p.R457R	ARHGAP36_uc004ewa.2_Silent_p.R445R|ARHGAP36_uc004ewb.2_Silent_p.R426R|ARHGAP36_uc004ewc.2_Silent_p.R321R	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	457					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						GGAACTTGAGGAAGATCCAGT	0.473000													12	17					0	0	0.00185496	0	0
GPR112	139378	broad.mit.edu	37	X	135498645	135498645	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:135498645C>T	uc004ezu.1	+	26	9529	c.9238C>T	c.(9238-9240)CCT>TCT	p.P3080S	GPR112_uc010nsb.1_Missense_Mutation_p.P2875S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	3080	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGTTCCTCTCCTTGATTTGT	0.289000													13	19					0	0	0.000422831	0	0
GPR101	83550	broad.mit.edu	37	X	136112884	136112884	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:136112884C>T	uc011mwh.1	-	1	950	c.950G>A	c.(949-951)AGC>AAC	p.S317N		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	317	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					ACCCTCCATGCTGCCGTCGCT	0.587000													36	56					0	0	0.00148497	0	0
F9	2158	broad.mit.edu	37	X	138630645	138630645	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:138630645C>T	uc004fas.1	+	5	544	c.515C>T	c.(514-516)CCA>CTA	p.P172L	F9_uc004fat.1_Missense_Mutation_p.P134L	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	172					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	TCCTGTGAACCAGCAGGTCAT	0.368000													10	11					0	0	0.000673444	0	0
GABRE	2564	broad.mit.edu	37	X	151124307	151124307	+	Silent	SNP	G	A	A			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:151124307G>A	uc004ffi.2	-	7	864	c.810C>T	c.(808-810)TTC>TTT	p.F270F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	270	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCACATTGAAGAAAATCGTCA	0.473000													14	18					0	0	0.000958276	0	0
TACSTD2	4070	broad.mit.edu	37	1	59041883	59041883	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr1:59041883delC	uc001cyz.3	-	1	1284	c.946delG	c.(946-948)GAGfs	p.E316fs		NM_002353	NP_002344	P09758	TACD2_HUMAN	tumor-associated calcium signal transducer 2	316	Cytoplasmic (Potential).				cell proliferation|cell surface receptor linked signaling pathway|visual perception	cytosol|integral to plasma membrane	receptor activity				0	all_cancers(7;6.54e-05)					TTTCTCAACTCCCCCAGTTCC	0.473													2	4	---	---	---	---					
SLCO2B1	11309	broad.mit.edu	37	11	74876960	74876960	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chr11:74876960delC	uc001owb.2	+	4	801	c.414delC	c.(412-414)ATCfs	p.I138fs	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Intron|SLCO2B1_uc010rrs.1_Frame_Shift_Del_p.I22fs|SLCO2B1_uc001owc.2_Frame_Shift_Del_p.I22fs|SLCO2B1_uc001owd.2_Frame_Shift_Del_p.I116fs	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	138	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CGCACTTCATCTCGGAGCCAT	0.617													31	84	---	---	---	---					
DMD	1756	broad.mit.edu	37	X	31187635	31187635	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:31187635delT	uc004dda.1	-	74	10722	c.10478delA	c.(10477-10479)CAGfs	p.Q3493fs	DMD_uc004dcq.1_Frame_Shift_Del_p.Q764fs|DMD_uc004dcr.1_Intron|DMD_uc004dcs.1_Intron|DMD_uc004dct.1_Frame_Shift_Del_p.Q1033fs|DMD_uc004dcu.1_Frame_Shift_Del_p.Q1033fs|DMD_uc004dcv.1_Frame_Shift_Del_p.Q1020fs|DMD_uc004dcw.2_Frame_Shift_Del_p.Q2149fs|DMD_uc004dcx.2_Frame_Shift_Del_p.Q2152fs|DMD_uc004dcz.2_Frame_Shift_Del_p.Q3370fs|DMD_uc004dcy.1_Frame_Shift_Del_p.Q3489fs|DMD_uc004ddb.1_Frame_Shift_Del_p.Q3485fs|DMD_uc004dcm.1_Frame_Shift_Del_p.Q425fs|DMD_uc004dcn.1_Frame_Shift_Del_p.Q412fs|DMD_uc004dco.1_Frame_Shift_Del_p.Q425fs|DMD_uc004dcp.1_Frame_Shift_Del_p.Q412fs|DMD_uc011mkb.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3493	Binds to SNTB1.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AATCAAGATCTGGGCAGGACT	0.438													2	4	---	---	---	---					
USP9X	8239	broad.mit.edu	37	X	41010280	41010283	+	Frame_Shift_Del	DEL	GTTT	-	-			TCGA-ER-A2NH-06A-11D-A196-08	TCGA-ER-A2NH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	dbcdc00e-8a5c-435a-9d24-c03a727612ba	5d6a97e5-dc5e-41a7-927c-dd782d05fb15	g.chrX:41010280_41010283delGTTT	uc004dfb.2	+	13	2366_2369	c.1733_1736delGTTT	c.(1732-1737)AGTTTGfs	p.S578fs	USP9X_uc004dfc.2_Frame_Shift_Del_p.S578fs	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	578_579					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						GAAATTTGTAGTTTGTTTGGTGAA	0.314													8	8	---	---	---	---					
