Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF9	400818	broad.mit.edu	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr1:144828683C>G	uc009wig.1	+	23	2804	c.2728C>G	c.(2728-2730)CAG>GAG	p.Q910E	NBPF9_uc010oxn.1_Missense_Mutation_p.Q808E|NBPF9_uc010oxo.1_Missense_Mutation_p.Q835E|NBPF9_uc010oxr.1_Missense_Mutation_p.Q937E|NBPF9_uc010oxt.1_Missense_Mutation_p.Q725E|NBPF9_uc001ekg.1_Missense_Mutation_p.Q237E|NBPF9_uc001ekk.1_Missense_Mutation_p.Q481E|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.Q237E|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Q570E|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	910	NBPF 7.					cytoplasm					0						ATTTGAGGAACAGCACATCAG	0.438000													4	141					0	0	0.500413	0	0
MTMR11	10903	broad.mit.edu	37	1	149904215	149904215	+	Silent	SNP	A	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr1:149904215A>T	uc001etl.3	-	11	1244	c.993T>A	c.(991-993)TCT>TCA	p.S331S	MTMR11_uc001etm.1_Silent_p.S259S|MTMR11_uc010pbm.1_Silent_p.S303S|MTMR11_uc010pbn.1_Silent_p.S173S	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	331	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CCTCAGCTACAGATGAATCTG	0.448000													112	105					0	0	0.870114	0	0
SRGAP2	23380	broad.mit.edu	37	1	206603533	206603533	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr1:206603533C>G	uc001hdy.2	+	11	1588	c.1255C>G	c.(1255-1257)CTG>GTG	p.L419V	SRGAP2_uc010prt.1_Missense_Mutation_p.L342V|SRGAP2_uc001hdx.2_Missense_Mutation_p.L419V|SRGAP2_uc010pru.1_Missense_Mutation_p.L342V|SRGAP2_uc010prv.1_Missense_Mutation_p.L343V	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	506	Rho-GAP.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					GGCAATTCCTCTGGTGGTGGA	0.473000													116	70					0	0	0.870114	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232575079	232575079	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr1:232575079G>A	uc001hvg.2	-	13	3964	c.3806C>T	c.(3805-3807)ACG>ATG	p.T1269M	SIPA1L2_uc001hvf.2_Missense_Mutation_p.T343M	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1269					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GCAGGGGGCCGTGTCGATGCC	0.642000													3	84					0	0	0.115264	0	0
ANUBL1	93550	broad.mit.edu	37	10	46122243	46122243	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr10:46122243T>G	uc001jcp.3	-	7	1270	c.1028A>C	c.(1027-1029)CAT>CCT	p.H343P	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.H343P|ANUBL1_uc009xmu.2_Missense_Mutation_p.H269P|ANUBL1_uc001jcn.3_Missense_Mutation_p.H269P|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	343							zinc ion binding				0						CAACTCCAAATGGGGTATCTG	0.428000													30	39					0	0	0.729181	0	0
Unknown	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr10:48968566A>G	uc001jgc.1	+	3		c.1234A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACAGGATAACAAACTGGAAAA	0.284000													4	44					0	0	0.150653	0	0
CDH23	64072	broad.mit.edu	37	10	73270925	73270925	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr10:73270925G>A	uc001jrx.3	+	6	762	c.385G>A	c.(385-387)GCG>ACG	p.A129T	CDH23_uc001jrw.3_Missense_Mutation_p.A129T|CDH23_uc001jrv.2_Missense_Mutation_p.A124T|CDH23_uc009xql.2_Missense_Mutation_p.A174T	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	129	Cadherin 1.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GAATGACAACGCGCCCACATT	0.582000													60	102					0	0	0.870114	0	0
SEMA4G	57715	broad.mit.edu	37	10	102739634	102739634	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr10:102739634G>A	uc010qpt.1	+	10	1456	c.1013G>A	c.(1012-1014)CGC>CAC	p.R338H	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Missense_Mutation_p.R338H|SEMA4G_uc001krx.2_Missense_Mutation_p.R338H|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	338	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GCCATCTGCCGCTATGACCTG	0.602000													76	105					0	0	0.870114	0	0
OR1S1	219959	broad.mit.edu	37	11	57982680	57982680	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr11:57982680T>C	uc010rkc.1	+	1	464	c.464T>C	c.(463-465)ATT>ACT	p.I155T		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				AGGTTCGGCATTTTGCTCACA	0.468000													5	227					0	0	0.217242	0	0
SLC22A11	55867	broad.mit.edu	37	11	64329854	64329854	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr11:64329854G>T	uc001oai.2	+	4	1142	c.768G>T	c.(766-768)AGG>AGT	p.R256S	SLC22A11_uc001oah.1_Missense_Mutation_p.D222Y|SLC22A11_uc001oaj.2_Missense_Mutation_p.R256S|SLC22A11_uc009ypq.2_Missense_Mutation_p.R256S|SLC22A11_uc001oak.1_Missense_Mutation_p.R85S	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	256	Extracellular (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	GGGACTGGAGGACTCTCCAGC	0.637000													231	371					1.75812e-138	1.98743e-138	0.870114	1	0
CCDC87	55231	broad.mit.edu	37	11	66359321	66359321	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr11:66359321G>A	uc001oiq.3	-	1	1234	c.1166C>T	c.(1165-1167)CCA>CTA	p.P389L	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	389	Potential.									ovary(1)|skin(1)	2						CCCTGCAGCTGGGTGACGGGT	0.592000													164	40					0	0	0.870114	0	0
NADSYN1	55191	broad.mit.edu	37	11	71201984	71201984	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr11:71201984G>C	uc001oqn.2	+	17	1782	c.1656G>C	c.(1654-1656)CAG>CAC	p.Q552H	NADSYN1_uc001oqo.2_Missense_Mutation_p.Q292H|NADSYN1_uc001oqp.2_Missense_Mutation_p.Q181H	NM_018161	NP_060631	Q6IA69	NADE_HUMAN	NAD synthetase 1	552	Ligase (By similarity).				NAD biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|NAD+ synthase (glutamine-hydrolyzing) activity|protein binding			ovary(2)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCTTCGTCCAGTTCTGCATCC	0.647000													33	202					0	0	0.760397	0	0
B4GALNT3	283358	broad.mit.edu	37	12	659075	659075	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr12:659075C>T	uc001qii.1	+	10	994	c.994C>T	c.(994-996)CGA>TGA	p.R332*	B4GALNT3_uc001qij.1_Nonsense_Mutation_p.R234*|B4GALNT3_uc001qik.1_5'Flank	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	332	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CACCCTCTATCGAGGTAAGGC	0.627000													12	13					0	0	0.387290	0	0
SP1	6667	broad.mit.edu	37	12	53777218	53777218	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr12:53777218G>C	uc001scw.2	+	3	1584	c.1487G>C	c.(1486-1488)AGC>ACC	p.S496T	SP1_uc010sog.1_Missense_Mutation_p.S489T	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	496	Transactivation domain C (highly charged).				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		GGGCAGACCAGCAGCAGCAAC	0.552000													3	164					0	0	0.115264	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558816	129558816	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr12:129558816G>T	uc009zyl.1	-	9	3232	c.2904C>A	c.(2902-2904)AGC>AGA	p.S968R	TMEM132D_uc001uia.2_Missense_Mutation_p.S506R	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	968	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CTGTCCGGTTGCTTAACCCAA	0.463000													102	4					3.44186e-60	3.80802e-60	0.870114	1	0
PNP	4860	broad.mit.edu	37	14	20942733	20942733	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr14:20942733A>T	uc001vxo.3	+	3	426	c.284A>T	c.(283-285)AAG>ATG	p.K95M	PNP_uc010ahn.2_Missense_Mutation_p.K95M|PNP_uc001vxn.3_Translation_Start_Site	NM_000270	NP_000261	P00491	PNPH_HUMAN	nucleoside phosphorylase	95					immune response|inosine catabolic process|interleukin-2 secretion|NAD biosynthesis via nicotinamide riboside salvage pathway|nicotinamide riboside catabolic process|positive regulation of alpha-beta T cell differentiation|positive regulation of T cell proliferation|purine base metabolic process|purine nucleotide catabolic process|purine-containing compound salvage|response to drug|urate biosynthetic process	cytoskeleton|cytosol	drug binding|nucleoside binding|phosphate binding|purine base binding|purine-nucleoside phosphorylase activity			ovary(2)	2					Aciclovir(DB00787)|Cladribine(DB00242)|Mercaptopurine(DB01033)	CCACTCTGGAAGGTAAGTCAG	0.532000													42	47					0	0	0.859065	0	0
RPS6KL1	83694	broad.mit.edu	37	14	75373755	75373755	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr14:75373755A>G	uc010tux.1	-	11	2140	c.1612T>C	c.(1612-1614)TTT>CTT	p.F538L	RPS6KL1_uc001xqx.1_3'UTR|RPS6KL1_uc001xqw.2_Missense_Mutation_p.F507L|RPS6KL1_uc010asd.1_RNA	NM_031464	NP_113652	Q9Y6S9	RPKL1_HUMAN	ribosomal protein S6 kinase-like 1	538	Protein kinase.					ribosome	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00658)		GTACTGAAAAAGGGATGGGAC	0.612000													4	340					0	0	0.248553	0	0
FBLN5	10516	broad.mit.edu	37	14	92361349	92361349	+	Silent	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr14:92361349G>A	uc001xzx.3	-	5	920	c.447C>T	c.(445-447)GGC>GGT	p.G149G	FBLN5_uc010aud.2_Silent_p.G154G|FBLN5_uc010aue.2_Silent_p.G190G	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	149	EGF-like 2; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				AGGTGTACCCGCCTTCAGTAT	0.522000													44	42					0	0	0.870114	0	0
LOC723972	723972	broad.mit.edu	37	15	35530016	35530016	+	RNA	SNP	G	A	A	rs140185173	by1000genomes	TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr15:35530016G>A	uc001ziy.2	+	1		c.490G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						TGAGGGCTACGTGGAGGGCCT	0.303000													10	18					0	0	0.361761	0	0
SLC24A5	283652	broad.mit.edu	37	15	48426522	48426522	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr15:48426522A>C	uc001zwe.2	+	3	442	c.369A>C	c.(367-369)TTA>TTC	p.L123F	SLC24A5_uc010bel.2_Missense_Mutation_p.L63F	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	123	Helical; Name=2; (Potential).				response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		CTCCTGAATTAGTTACTGCTT	0.383000													21	19					0	0	0.667858	0	0
ISLR	3671	broad.mit.edu	37	15	74467459	74467459	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr15:74467459G>A	uc002axg.1	+	2	542	c.260G>A	c.(259-261)CGC>CAC	p.R87H	ISLR_uc002axh.1_Missense_Mutation_p.R87H	NM_005545	NP_005536	O14498	ISLR_HUMAN	immunoglobulin superfamily containing	87	LRR 2.				cell adhesion	extracellular region				large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						AATGAGATCCGCACGGTGGCC	0.637000													3	42					0	0	0.115264	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652000													4	9					0	0	0.217242	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													4	36					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	17	21730847	21730847	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr17:21730847G>T	uc002gyy.3	+	2	274	c.149G>T	c.(148-150)CGG>CTG	p.R50L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GGCAAGCAGCGGGAAGATGGC	0.522000													4	58					0.00909568	0.00945951	0.150653	1	0
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr18:14513764C>T	uc010dln.2	-	10	1884	c.1430G>A	c.(1429-1431)CGG>CAG	p.R477Q	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	477										skin(3)	3						AAGTTGTTTCCGGGTATCATT	0.358000													3	43					0	0	0.115264	0	0
GNA11	2767	broad.mit.edu	37	19	3118942	3118942	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr19:3118942A>T	uc002lxd.2	+	5	868	c.626A>T	c.(625-627)CAG>CTG	p.Q209L	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	209	GTP (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity	p.Q209L(73)|p.Q209P(1)		eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GTGGGGGGCCAGCGGTCGGAG	0.612000			Mis		uveal melanoma								39	48					0	0	0.812448	0	0
ZFP30	22835	broad.mit.edu	37	19	38135567	38135567	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr19:38135567T>G	uc002ogv.1	-	4	596	c.80A>C	c.(79-81)CAG>CCG	p.Q27P	ZFP30_uc002ogw.1_Missense_Mutation_p.Q27P|ZFP30_uc002ogx.1_Missense_Mutation_p.Q27P|ZFP30_uc010xtt.1_Missense_Mutation_p.Q27P	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	27	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CAAATTCCTCTGATATGAGTT	0.383000													48	63					0	0	0.870114	0	0
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr2:107049631C>T	uc010ywi.1	-	16	2373	c.2316G>A	c.(2314-2316)GCG>GCA	p.A772A		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	772					intracellular transport		binding			ovary(1)	1						TTTCTGAATCCGCATTTCGCA	0.373000													4	128					0	0	0.184627	0	0
SF3B1	23451	broad.mit.edu	37	2	198267483	198267483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr2:198267483C>T	uc002uue.2	-	14	1922	c.1874G>A	c.(1873-1875)CGT>CAT	p.R625H		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	625	HEAT 3.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TGTTGTGTTACGGACATACTC	0.438000													28	13					0	0	0.706142	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398000			Mis		gliobastoma 								39	48					0	0	0.847076	0	0
TASP1	55617	broad.mit.edu	37	20	13514718	13514718	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr20:13514718G>A	uc002woi.2	-	9	863	c.746C>T	c.(745-747)GCT>GTT	p.A249V	TASP1_uc010zri.1_Intron|TASP1_uc002woh.2_Missense_Mutation_p.A226V|TASP1_uc010zrj.1_RNA	NM_017714	NP_060184	Q9H6P5	TASP1_HUMAN	taspase 1 precursor	249					asparagine catabolic process via L-aspartate|positive regulation of transcription, DNA-dependent|protein maturation		threonine-type endopeptidase activity				0						ACTGGAGACAGCAGCAGCAAC	0.483000													3	43					0	0	0.115264	0	0
POFUT1	23509	broad.mit.edu	37	20	30797937	30797937	+	Missense_Mutation	SNP	G	A	A	rs148829108		TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr20:30797937G>A	uc002wxp.2	+	2	237	c.188G>A	c.(187-189)CGT>CAT	p.R63H	POFUT1_uc002wxo.2_Missense_Mutation_p.R63H|POFUT1_uc010ztt.1_Intron|POFUT1_uc010ztu.1_Intron|PLAGL2_uc002wxn.2_5'Flank	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	63					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTGCTAAACCGTACCTTGGCT	0.552000													4	189					0	0	0.150653	0	0
TP53RK	112858	broad.mit.edu	37	20	45315670	45315670	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr20:45315670C>A	uc002xsk.2	-	2	707	c.484G>T	c.(484-486)GAT>TAT	p.D162Y	SLC13A3_uc002xsg.1_5'Flank|SLC13A3_uc010gho.1_5'Flank|TP53RK_uc002xsj.2_3'UTR	NM_033550	NP_291028	Q96S44	PRPK_HUMAN	p53-related protein kinase	162	Protein kinase.	Proton acceptor (By similarity).			lipopolysaccharide biosynthetic process	membrane|nucleus	ATP binding|p53 binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Myeloproliferative disorder(115;0.0122)				GTGGTGAGATCACCATGAATG	0.493000													89	84					6.42612e-47	6.96163e-47	0.870114	1	0
SON	6651	broad.mit.edu	37	21	34927682	34927682	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr21:34927682C>A	uc002yse.1	+	3	6194	c.6145C>A	c.(6145-6147)CGT>AGT	p.R2049S	SON_uc002ysb.1_Missense_Mutation_p.R2049S|SON_uc002ysc.2_Missense_Mutation_p.R2049S|SON_uc002ysd.2_Missense_Mutation_p.R1040S|SON_uc002ysf.1_Intron|SON_uc002ysg.2_Missense_Mutation_p.R1040S	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	2049					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						ATCACCCAAACGTCTGACAGA	0.393000													3	104					0.00909568	0.00945951	0.150653	1	0
MMP11	4320	broad.mit.edu	37	22	24123560	24123560	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr22:24123560T>G	uc002zxx.2	+	6	1061	c.1039T>G	c.(1039-1041)TTC>GTC	p.F347V	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_RNA	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	347	Hemopexin-like 2.				collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				GGACGCTGCCTTCGAGGATGC	0.647000													5	10					0	0	0.217242	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659536	24659536	+	RNA	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr22:24659536C>T	uc002zzs.3	+	7		c.3268C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						GATCTCATCGCGGACACCACT	0.512000													5	30					0	0	0.184627	0	0
ATP6V1A	523	broad.mit.edu	37	3	113505224	113505224	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr3:113505224T>C	uc003eao.2	+	6	776	c.710T>C	c.(709-711)CTT>CCT	p.L237P	ATP6V1A_uc011bik.1_Missense_Mutation_p.L204P	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	237					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						CTTGATGCCCTTTTTCCGTAA	0.423000													4	223					0	0	0.217242	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515200	140515200	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr5:140515200C>T	uc003liq.2	+	1	401	c.184C>T	c.(184-186)CGG>TGG	p.R62W		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	62	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTGGCCACTCGGGGCGCGCG	0.488000													57	59					0	0	0.870114	0	0
HK3	3101	broad.mit.edu	37	5	176314705	176314705	+	Silent	SNP	C	T	T	rs143340857		TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr5:176314705C>T	uc003mfa.2	-	11	1439	c.1347G>A	c.(1345-1347)CCG>CCA	p.P449P	HK3_uc003mez.2_Silent_p.P5P	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	449	Regulatory.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CATCGCATTCCGGGGCCAGGA	0.652000													32	35					0	0	0.827153	0	0
PDE7B	27115	broad.mit.edu	37	6	136476824	136476824	+	Silent	SNP	C	T	T			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr6:136476824C>T	uc003qgp.2	+	8	942	c.639C>T	c.(637-639)CAC>CAT	p.H213H	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Silent_p.H265H	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	213	Catalytic (By similarity).	Divalent metal cation 1 (By similarity).			signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	CAGCAGCACACGATGTGGACC	0.488000													3	37					0	0	0.115264	0	0
SNAI2	6591	broad.mit.edu	37	8	49832991	49832991	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr8:49832991G>A	uc003xqp.2	-	2	253	c.89C>T	c.(88-90)TCC>TTC	p.S30F		NM_003068	NP_003059	O43623	SNAI2_HUMAN	snail 2	30					canonical Wnt receptor signaling pathway|ectoderm and mesoderm interaction|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_cancers(86;0.0368)|all_epithelial(80;0.000624)|Lung NSC(129;0.0019)|all_lung(136;0.00502)				GAGATACGGGGAAATAATCAC	0.428000													86	87					0	0	0.870114	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617776	111617776	+	Silent	SNP	G	A	A	rs149121708	byFrequency	TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr9:111617776G>A	uc004bdi.2	-	1	500	c.435C>T	c.(433-435)CAC>CAT	p.H145H		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	145						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						CCAGCACAGCGTGCTCCTCGG	0.622000													34	36					0	0	0.769981	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316501	30316503	+	In_Frame_Del	DEL	CTG	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr10:30316501_30316503delCTG	uc001iux.2	-	2	2633_2635	c.2574_2576delCAG	c.(2572-2577)AGCAGT>AGT	p.858_859SS>S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_In_Frame_Del_p.720_721SS>S|KIAA1462_uc009xle.1_In_Frame_Del_p.858_859SS>S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	858_859	Ser-rich.									ovary(4)	4						ACTCTCCTCActgctgctgctgc	0.463													9	136	---	---	---	---					
AMHR2	269	broad.mit.edu	37	12	53818999	53819001	+	In_Frame_Del	DEL	CTG	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr12:53818999_53819001delCTG	uc001scx.1	+	4	553_555	c.475_477delCTG	c.(475-477)CTGdel	p.L162del	AMHR2_uc009zmy.1_In_Frame_Del_p.L162del	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	162	Helical; (Potential).				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CCTCCTCCTCCTGCTGCTGCTGG	0.591									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				7	215	---	---	---	---					
CEP290	80184	broad.mit.edu	37	12	88487681	88487681	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr12:88487681delT	uc001tar.2	-	28	3519	c.3175delA	c.(3175-3177)ATAfs	p.I1059fs	CEP290_uc001taq.2_Frame_Shift_Del_p.I119fs|CEP290_uc001tat.2_Frame_Shift_Del_p.I852fs	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1059					cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						AGCATAGTTATTTTTTTTGAA	0.338													7	46	---	---	---	---					
VPS53	55275	broad.mit.edu	37	17	465775	465775	+	Frame_Shift_Del	DEL	G	-	-	rs2075443	byFrequency	TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr17:465775delG	uc002frn.2	-	14	1671	c.1524delC	c.(1522-1524)TACfs	p.Y508fs	VPS53_uc002frk.2_Frame_Shift_Del_p.Y27fs|VPS53_uc010cjo.1_Frame_Shift_Del_p.Y508fs|VPS53_uc002frl.2_RNA|VPS53_uc002frm.2_Frame_Shift_Del_p.Y479fs|VPS53_uc002fro.2_Frame_Shift_Del_p.Y310fs|VPS53_uc010cjp.1_Frame_Shift_Del_p.Y231fs	NM_018289	NP_060759	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 isoform 2	508					protein transport	endosome membrane|Golgi apparatus					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		TTTTCCAGGCGTATTCTCGGA	0.483													58	57	---	---	---	---					
NWD1	284434	broad.mit.edu	37	19	16908642	16908642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr19:16908642delT	uc002neu.3	+	16	3826	c.3404delT	c.(3403-3405)GTTfs	p.V1135fs	NWD1_uc002net.3_Frame_Shift_Del_p.V1000fs|NWD1_uc002nev.3_Frame_Shift_Del_p.V929fs			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1135	WD 8.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGACGGCTGTTTTTGGTACT	0.552													7	554	---	---	---	---					
MYO10	4651	broad.mit.edu	37	5	16699620	16699620	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr5:16699620delC	uc003jft.3	-	26	3963	c.3495delG	c.(3493-3495)CGGfs	p.R1165fs	MYO10_uc011cnc.1_Frame_Shift_Del_p.R44fs|MYO10_uc011cnd.1_Frame_Shift_Del_p.R522fs|MYO10_uc011cne.1_Frame_Shift_Del_p.R522fs|MYO10_uc010itx.2_Frame_Shift_Del_p.R788fs	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1165					axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						CAGAGTCACGCCGGTATGAAA	0.498													32	57	---	---	---	---					
FYN	2534	broad.mit.edu	37	6	111983042	111983042	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A3ES-06A-11D-A20D-08	TCGA-ER-A3ES-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	73914542-306e-4dfb-a6d2-538baa7344f2	61178f55-37d8-4c86-b1f3-3480d4f7a494	g.chr6:111983042delT	uc003pvj.2	-	13	1854	c.1514delA	c.(1513-1515)AAGfs	p.K505fs	FYN_uc003pvi.2_Frame_Shift_Del_p.K450fs|FYN_uc003pvk.2_Frame_Shift_Del_p.K505fs|FYN_uc003pvh.2_Frame_Shift_Del_p.K502fs	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	505	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TTCAGGGTCCTTTTTCCAGCA	0.562													7	351	---	---	---	---					
