Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CTNNBIP1	56998	broad.mit.edu	37	1	9931303	9931303	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:9931303G>A	uc001aqk.1	-	5	436	c.129C>T	c.(127-129)ACC>ACT	p.T43T	CTNNBIP1_uc001aql.1_Silent_p.T43T	NM_020248	NP_064633	Q9NSA3	CNBP1_HUMAN	catenin, beta interacting protein 1	43					anterior/posterior pattern formation|branching involved in ureteric bud morphogenesis|negative regulation of mesenchymal cell proliferation|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell proliferation|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway|positive regulation of monocyte differentiation|positive regulation of osteoblast differentiation|regulation of vascular permeability involved in acute inflammatory response|Wnt receptor signaling pathway	Axin-APC-beta-catenin-GSK3B complex|cytosol|nucleus	armadillo repeat domain binding|beta-catenin binding				0		all_lung(284;1.82e-05)|Lung NSC(185;3.08e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|Colorectal(212;7.32e-08)|COAD - Colon adenocarcinoma(227;1.73e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000912)|KIRC - Kidney renal clear cell carcinoma(229;0.00112)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		CCCCTGCATAGGTGCGCAGGA	0.647000													7	7					0	0	0.000442599	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919847	12919847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:12919847G>A	uc001aum.1	+	3	674	c.587G>A	c.(586-588)AGA>AAA	p.R196K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	196											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAATATCTCAGAAAGTCATTG	0.388000													93	137					0	0	0.000781405	0	0
FBLIM1	54751	broad.mit.edu	37	1	16095057	16095057	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:16095057C>T	uc001axd.1	+	6	916	c.473C>T	c.(472-474)CCC>CTC	p.P158L	FBLIM1_uc001axe.1_Missense_Mutation_p.P158L|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.P158L|FBLIM1_uc001axh.1_Intron|FBLIM1_uc001axi.1_Intron	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	158	Pro-rich.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CAGCCCGGTCCCCTCAGGCCC	0.647000													11	20					0	0	0.000219431	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17950950	17950950	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:17950950C>T	uc001ban.2	+	13	1428	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	ARHGEF10L_uc009vpe.1_Silent_p.I384I|ARHGEF10L_uc001bao.2_Silent_p.I384I|ARHGEF10L_uc001bap.2_Silent_p.I384I|ARHGEF10L_uc010ocr.1_Silent_p.I181I|ARHGEF10L_uc001baq.2_Silent_p.I189I|ARHGEF10L_uc010ocs.1_Silent_p.I201I|ARHGEF10L_uc001bar.2_Intron|ARHGEF10L_uc009vpf.2_5'Flank	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	423	DH.				regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		CCATGTCCATCATCAAGAAGG	0.562000													36	57					0	0	0.000491102	0	0
RUNX3	864	broad.mit.edu	37	1	25228878	25228878	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:25228878G>A	uc001bjq.2	-	5	1394	c.983C>T	c.(982-984)TCC>TTC	p.S328F	RUNX3_uc010oen.1_Missense_Mutation_p.S275F|RUNX3_uc009vrj.2_Missense_Mutation_p.S342F|RUNX3_uc001bjr.2_Missense_Mutation_p.S342F|RUNX3_uc001bjs.2_RNA	NM_004350	NP_004341	Q13761	RUNX3_HUMAN	runt-related transcription factor 3 isoform 2	328	Pro/Ser/Thr-rich.				cell proliferation|induction of apoptosis|negative regulation of cell cycle|negative regulation of epithelial cell proliferation|protein phosphorylation|transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00131)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;2.85e-26)|Colorectal(126;4.35e-08)|COAD - Colon adenocarcinoma(152;1.92e-06)|GBM - Glioblastoma multiforme(114;0.000102)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00148)|BRCA - Breast invasive adenocarcinoma(304;0.00173)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.136)		GTGGTAGGGGGACGGGTTGGC	0.692000													12	21					0	0	0.00010058	0	0
SYTL1	84958	broad.mit.edu	37	1	27676173	27676173	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:27676173G>A	uc001bnw.1	+	8	831	c.664G>A	c.(664-666)GGG>AGG	p.G222R	SYTL1_uc001bnv.1_Missense_Mutation_p.G210R|SYTL1_uc009vsu.1_Missense_Mutation_p.G210R|SYTL1_uc001bnx.2_Missense_Mutation_p.G273R|SYTL1_uc009vsv.1_Missense_Mutation_p.G222R	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	222					exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CCTGGAGAATGGGGAGGAGGC	0.711000													4	5					0	0	0.000602214	0	0
PHACTR4	65979	broad.mit.edu	37	1	28785771	28785771	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:28785771T>G	uc001bpw.2	+	3	472	c.190_splice	c.e3+2	p.V64_splice	PHACTR4_uc001bpu.2_Splice_Site_p.V64_splice|PHACTR4_uc001bpv.1_Splice_Site|PHACTR4_uc001bpx.2_Splice_Site_p.V48_splice|PHACTR4_uc001bpy.2_Splice_Site_p.V74_splice	NM_001048183	NP_001041648	Q8IZ21	PHAR4_HUMAN	phosphatase and actin regulator 4 isoform 1								actin binding|protein phosphatase inhibitor activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;7.01e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;1.35e-21)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0144)|READ - Rectum adenocarcinoma(331;0.0649)		CTTCAGAAGGTGAGATATTAA	0.348000													25	46					0	0	0.00047179	0	0
SERINC2	347735	broad.mit.edu	37	1	31902327	31902327	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:31902327T>G	uc010ogh.1	+	8	1168	c.967T>G	c.(967-969)TGG>GGG	p.W323G	SERINC2_uc010ogg.1_Missense_Mutation_p.W320G|SERINC2_uc001bst.2_Missense_Mutation_p.W319G|SERINC2_uc001bsu.2_Missense_Mutation_p.W264G|SERINC2_uc001bsv.2_Missense_Mutation_p.W264G	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	319	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		GACCCAGTGGTGGGATGCCCC	0.572000													15	26					0	0	0.000308642	0	0
CSMD2	114784	broad.mit.edu	37	1	34038143	34038143	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:34038143G>A	uc001bxn.1	-	51	7760	c.7731C>T	c.(7729-7731)GGC>GGT	p.G2577G	CSMD2_uc001bxm.1_Silent_p.G2575G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2577	Extracellular (Potential).|Sushi 15.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCTCCATAGGCCTGTGTCCA	0.592000													28	44					0	0	0.000227799	0	0
CSMD2	114784	broad.mit.edu	37	1	34049275	34049275	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:34049275C>T	uc001bxn.1	-	48	7242	c.7213G>A	c.(7213-7215)GAG>AAG	p.E2405K	CSMD2_uc001bxm.1_Missense_Mutation_p.E2403K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2405	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TATTGCTTCTCGCTGAGGAAG	0.413000													42	75					0	0	0.000781405	0	0
MACF1	23499	broad.mit.edu	37	1	39753053	39753053	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:39753053C>T	uc010ois.1	+	16	1824	c.1619C>T	c.(1618-1620)CCC>CTC	p.P540L	MACF1_uc001cda.1_Missense_Mutation_p.P448L	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	540					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTGGTTCCACCCTCTACTTTA	0.488000													65	107					0	0	0.000781405	0	0
RIMKLA	284716	broad.mit.edu	37	1	42865086	42865086	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:42865086A>G	uc001chi.2	+	2	313	c.175A>G	c.(175-177)AAC>GAC	p.N59D		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	59					protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CCTCCAGCTAAACCAGAAGGC	0.527000													5	11					0	0	3.59834e-05	0	0
HECTD3	79654	broad.mit.edu	37	1	45472388	45472388	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:45472388G>A	uc009vxk.2	-	13	1799	c.1701C>T	c.(1699-1701)CCC>CCT	p.P567P	HECTD3_uc001cmx.3_5'Flank|HECTD3_uc001cmy.3_Silent_p.P177P|HECTD3_uc010olh.1_Silent_p.P283P	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	567	HECT.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					GTACAAAGAAGGGCAGGGGCA	0.582000													11	21					0	0	0.000566183	0	0
CYP4B1	1580	broad.mit.edu	37	1	47283674	47283674	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:47283674G>A	uc001cqm.3	+	10	1326	c.1242G>A	c.(1240-1242)AGG>AGA	p.R414R	CYP4B1_uc001cqn.3_Silent_p.R415R|CYP4B1_uc009vym.2_Silent_p.R400R|CYP4B1_uc010omk.1_Silent_p.R251R	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	414					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CCCTCCATAGGAACAGTGCTG	0.587000													27	49					0	0	0.000147802	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47533279	47533279	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:47533279G>A	uc001cqu.1	+	1	120	c.117G>A	c.(115-117)ATG>ATA	p.M39I		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	39	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						GGAGATGGATGATCAGAGCCC	0.522000													23	39					0	0	0.000720815	0	0
CYP4A22	284541	broad.mit.edu	37	1	47603320	47603320	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:47603320C>T	uc001cqv.1	+	1	214	c.163C>T	c.(163-165)CCC>TCC	p.P55S	CYP4A22_uc009vyo.2_Missense_Mutation_p.P55S|CYP4A22_uc009vyp.2_Missense_Mutation_p.P55S	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	55						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						CCCGTGCCCTCCCTCCCACTG	0.612000													10	17					0	0	0.000673444	0	0
ZYG11B	79699	broad.mit.edu	37	1	53237304	53237304	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:53237304C>T	uc001cuj.2	+	3	1004	c.809C>T	c.(808-810)TCT>TTT	p.S270F	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Missense_Mutation_p.S261F	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	270							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						AACCTTGTTTCTCTGGATGTT	0.393000													23	30					0	0	0.000720815	0	0
SGIP1	84251	broad.mit.edu	37	1	67105490	67105490	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:67105490T>C	uc001dcr.2	+	5	419	c.202T>C	c.(202-204)TAT>CAT	p.Y68H		NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	68					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						AAATGGATTTTATGCGGAAAT	0.284000													24	49					0	0	0.000227799	0	0
SERBP1	26135	broad.mit.edu	37	1	67895945	67895945	+	Silent	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:67895945G>C	uc001ddv.2	-	1	179	c.39C>G	c.(37-39)GTC>GTG	p.V13V	SERBP1_uc001ddx.2_Silent_p.V13V|SERBP1_uc001ddy.2_Silent_p.V13V|SERBP1_uc001ddw.2_Silent_p.V13V	NM_001018067	NP_001018077	Q8NC51	PAIRB_HUMAN	SERPINE1 mRNA binding protein 1 isoform 1	13					regulation of mRNA stability	nucleus|perinuclear region of cytoplasm	mRNA 3'-UTR binding|protein binding			skin(1)	1						ATCGGTTGGTGACCACGCAGC	0.627000													20	54					0	0	0.000375601	0	0
PTGER3	5733	broad.mit.edu	37	1	71478162	71478162	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:71478162C>T	uc001dfg.1	-	2	1134	c.903G>A	c.(901-903)ATG>ATA	p.M301I	PTGER3_uc001dfh.1_RNA|PTGER3_uc001dfi.1_RNA|PTGER3_uc001dfj.1_RNA|PTGER3_uc001dfk.1_Missense_Mutation_p.M301I|PTGER3_uc001dfl.1_Missense_Mutation_p.M301I|PTGER3_uc009wbm.1_Missense_Mutation_p.M301I|PTGER3_uc001dfm.1_RNA|PTGER3_uc001dfn.2_Missense_Mutation_p.M301I|PTGER3_uc009wbn.1_Missense_Mutation_p.M301I|PTGER3_uc009wbo.2_Missense_Mutation_p.M301I|PTGER3_uc001dfo.2_Missense_Mutation_p.M301I|PTGER3_uc001dfp.1_Missense_Mutation_p.M301I|PTGER3_uc001dfq.2_Missense_Mutation_p.M301I	NM_198714	NP_942007	P43115	PE2R3_HUMAN	prostaglandin E receptor 3, subtype EP3 isoform	301	Helical; Name=6; (Potential).				cell death|positive regulation of fever generation|transcription, DNA-dependent	integral to plasma membrane|nuclear envelope	ligand-dependent nuclear receptor activity|prostaglandin E receptor activity			pancreas(1)|lung(1)|skin(1)	3					Bimatoprost(DB00905)	TTTTCAACATCATTATCTAAG	0.274000													24	33					0	0	0.000586117	0	0
COL24A1	255631	broad.mit.edu	37	1	86210432	86210432	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:86210432C>T	uc001dlj.2	-	57	4631	c.4589G>A	c.(4588-4590)AGC>AAC	p.S1530N	COL24A1_uc001dli.2_Missense_Mutation_p.S645N|COL24A1_uc010osd.1_Missense_Mutation_p.S830N|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1530	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		ATTCTTGATGCTGTGCAATAA	0.393000													25	40					0	0	0.000586117	0	0
COL24A1	255631	broad.mit.edu	37	1	86308024	86308024	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:86308024C>T	uc001dlj.2	-	40	3557	c.3515G>A	c.(3514-3516)AGG>AAG	p.R1172K	COL24A1_uc001dli.2_Missense_Mutation_p.R308K|COL24A1_uc010osd.1_Missense_Mutation_p.R472K|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1172	Collagen-like 12.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		AATACTTACCCTGTACCCTGG	0.299000													16	35					0	0	0.000132079	0	0
CLCA4	22802	broad.mit.edu	37	1	87045664	87045664	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:87045664A>T	uc009wcs.2	+	14	2440	c.2396A>T	c.(2395-2397)GAT>GTT	p.D799V	CLCA4_uc009wct.2_Missense_Mutation_p.D562V|CLCA4_uc009wcu.2_Missense_Mutation_p.D619V	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	799						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		AGTATTCTTGATCTAAGAGAC	0.338000													23	41					0	0	0.000295444	0	0
EPHX4	253152	broad.mit.edu	37	1	92508459	92508459	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:92508459A>G	uc001don.2	+	3	501	c.397A>G	c.(397-399)ACA>GCA	p.T133A		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	133						integral to membrane	hydrolase activity			central_nervous_system(1)	1						TTATGGAGAAACAGATGCTCC	0.343000													3	39					0	0	6.4e-05	0	0
DPYD	1806	broad.mit.edu	37	1	98039412	98039412	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:98039412C>T	uc001drv.2	-	11	1380	c.1243G>A	c.(1243-1245)GAA>AAA	p.E415K		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	415					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTCCAGTTTCATCTTGCTCT	0.438000													37	58					0	0	0.00058488	0	0
DPYD	1806	broad.mit.edu	37	1	98165083	98165083	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:98165083G>A	uc001drv.2	-	6	641	c.504C>T	c.(502-504)ATC>ATT	p.I168I	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	168					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGATCTGTGGGATACTCATTG	0.383000													47	84					0	0	0.000781405	0	0
VAV3	10451	broad.mit.edu	37	1	108303475	108303475	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:108303475C>T	uc001dvk.1	-	10	1002	c.948G>A	c.(946-948)GGG>GGA	p.G316G	VAV3_uc010ouw.1_Silent_p.G316G|VAV3_uc001dvl.1_Silent_p.G140G|VAV3_uc010oux.1_Silent_p.G316G	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	316	DH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		GAGTAAATTTCCCATTATTTG	0.353000													7	19					0	0	0.000157383	0	0
CELSR2	1952	broad.mit.edu	37	1	109814011	109814011	+	Silent	SNP	G	T	T	rs141656858	byFrequency	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:109814011G>T	uc001dxa.3	+	27	7741	c.7680G>T	c.(7678-7680)TCG>TCT	p.S2560S		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	2560	Cytoplasmic (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		TCCCCAGCTCGGGCCTGCAGC	0.647000													7	146					0.000157383	0.00163633	0.000157383	1	0
GSTM5	2949	broad.mit.edu	37	1	110255773	110255773	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:110255773G>A	uc001dyn.2	+	3	216	c.145G>A	c.(145-147)GAA>AAA	p.E49K	GSTM5_uc010ovu.1_5'UTR	NM_000851	NP_000842	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5	49	Glutathione binding (By similarity).|GST N-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity			central_nervous_system(6)	6		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Colorectal(144;0.0131)|all cancers(265;0.0252)|Epithelial(280;0.0265)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.0474)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	GTGGCTGAATGAAAAATTCAA	0.572000													19	38					0	0	0.000295444	0	0
TRIM33	51592	broad.mit.edu	37	1	115006056	115006056	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:115006056G>A	uc001eew.2	-	3	852	c.768C>T	c.(766-768)ATC>ATT	p.I256I	TRIM33_uc010ows.1_5'UTR|TRIM33_uc001eex.2_Silent_p.I256I	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	256	B box-type 1.				negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTTCTTCCTGATCAAGTGAT	0.353000			T	RET	papillary thyroid								29	59					0	0	0.000227799	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:115256529T>A	uc009wgu.2	-	3	436	c.182A>T	c.(181-183)CAA>CTA	p.Q61L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			32	76					0	0	0.00058488	0	0
SPAG17	200162	broad.mit.edu	37	1	118583359	118583359	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:118583359C>T	uc001ehk.2	-	22	3228	c.3160G>A	c.(3160-3162)GAA>AAA	p.E1054K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1054						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GTACCTTTTTCAAACATTGTC	0.403000													20	24					0	0	0.000132079	0	0
HAO2	51179	broad.mit.edu	37	1	119936435	119936435	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:119936435G>A	uc001ehq.1	+	9	1380	c.1028G>A	c.(1027-1029)CGA>CAA	p.R343Q	HAO2_uc001ehr.1_Missense_Mutation_p.R343Q	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	343	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GAGATCAATCGAAACTTGGTC	0.478000													47	69					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120478220	120478221	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:120478220_120478221GG>TT	uc001eik.2	-	22	3785_3786	c.3529_3530CC>AA	c.(3529-3531)CCA>AAA	p.P1177K	NOTCH2_uc001eil.2_Missense_Mutation_p.P1177K	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1177	EGF-like 30; calcium-binding (Potential).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTGATAGCCTGGGACACACTGC	0.460000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				9	245					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864154	144864155	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:144864154_144864155GG>TT	uc001elw.3	-	36	6231_6232	c.5940_5941CC>AA	c.(5938-5943)TCCCTC>TCAATC	p.L1981I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.L1875I|PDE4DIP_uc001elv.3_Missense_Mutation_p.L988I|PDE4DIP_uc001ema.2_Missense_Mutation_p.L168I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1981	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTTTCCTGGAGGGAAAGACGTT	0.441000			T	PDGFRB	MPD								13	603					0	0	6.4e-05	0	0
GJA8	2703	broad.mit.edu	37	1	147380566	147380566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:147380566G>A	uc001epu.1	+	2	547	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	162	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					GACCCTCTTTGAAGTGGGCTT	0.587000													112	60					0	0	0.000781405	0	0
FLG	2312	broad.mit.edu	37	1	152275460	152275460	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:152275460C>T	uc001ezu.1	-	3	11938	c.11902G>A	c.(11902-11904)GGT>AGT	p.G3968S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3968					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTGATTGACCTTTTTGCCTT	0.428000									Ichthyosis				34	144					0	0	0.000191422	0	0
FLG2	388698	broad.mit.edu	37	1	152324164	152324164	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:152324164T>G	uc001ezw.3	-	3	6171	c.6098A>C	c.(6097-6099)TAC>TCC	p.Y2033S	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2033	Filaggrin 9.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTGTCACTGTACTCACTGTG	0.537000													5	417					0	0	0.000308642	0	0
KPRP	448834	broad.mit.edu	37	1	152732378	152732378	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:152732378C>T	uc001fal.1	+	2	372	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	105	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCAAACTTCCTCTGTTCAA	0.532000													77	284					0	0	0.000781405	0	0
DAP3	7818	broad.mit.edu	37	1	155686885	155686885	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:155686885C>T	uc001flq.2	+	3	303	c.134C>T	c.(133-135)CCG>CTG	p.P45L	DAP3_uc001flr.2_Missense_Mutation_p.P45L|DAP3_uc001fls.2_Missense_Mutation_p.P45L|DAP3_uc010pgl.1_Intron|DAP3_uc001flt.2_Missense_Mutation_p.P45L|DAP3_uc001flu.2_Missense_Mutation_p.P45L|DAP3_uc010pgm.1_Missense_Mutation_p.P45L	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	45					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GTTGAGAGTCCGAGAGCTATT	0.423000													34	128					0	0	0.000191422	0	0
PEAR1	375033	broad.mit.edu	37	1	156880096	156880096	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:156880096G>A	uc001fqj.1	+	14	1865	c.1749G>A	c.(1747-1749)AAG>AAA	p.K583K	PEAR1_uc001fqk.1_Silent_p.K208K	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	583	EGF-like 7.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCACCTGCAAGAATGGGGGCA	0.637000											OREG0013890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	123	50					0	0	0.000781405	0	0
FCRL5	83416	broad.mit.edu	37	1	157490968	157490968	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:157490968C>T	uc001fqu.2	-	11	2512	c.2354G>A	c.(2353-2355)CGG>CAG	p.R785Q	FCRL5_uc009wsm.2_Missense_Mutation_p.R785Q	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	785	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ATGAAAAAACCGGTACAGGAT	0.597000													61	28					0	0	0.000781405	0	0
FCRL4	83417	broad.mit.edu	37	1	157559066	157559066	+	Missense_Mutation	SNP	C	T	T	rs145332965		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:157559066C>T	uc001fqw.2	-	3	371	c.235G>A	c.(235-237)GAA>AAA	p.E79K	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	79	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity	p.E79K(1)		ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				AGTCCAGATTCCCGAACCTCG	0.502000													84	28					0	0	0.000781405	0	0
OR10J1	26476	broad.mit.edu	37	1	159410436	159410436	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:159410436C>T	uc010piv.1	+	1	888	c.888C>T	c.(886-888)AAC>AAT	p.N296N	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	296	Helical; Name=7; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CCCTACTGAACCCTGTGGTAT	0.512000													64	34					0	0	0.000781405	0	0
OR10J5	127385	broad.mit.edu	37	1	159505215	159505215	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:159505215C>T	uc010piw.1	-	1	583	c.583G>A	c.(583-585)GAG>AAG	p.E195K		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					TTTATTATCTCATTGATAGTG	0.383000													15	74					0	0	0.000219431	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161022471	161022471	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:161022471C>T	uc001fxl.2	-	7	1127	c.781G>A	c.(781-783)GAT>AAT	p.D261N	ARHGAP30_uc001fxk.2_Missense_Mutation_p.D261N|ARHGAP30_uc001fxm.2_Missense_Mutation_p.D107N|ARHGAP30_uc009wtx.2_5'UTR|ARHGAP30_uc001fxn.1_Missense_Mutation_p.D107N	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	261					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GGGGGTCCATCGCCAGCCTGC	0.612000													7	20					0	0	8.12818e-05	0	0
DCAF6	55827	broad.mit.edu	37	1	167962515	167962515	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:167962515C>T	uc001gew.2	+	7	982	c.740C>T	c.(739-741)TCC>TTC	p.S247F	DCAF6_uc001gev.2_Missense_Mutation_p.S247F|DCAF6_uc001gex.2_Missense_Mutation_p.S247F|DCAF6_uc010plk.1_Missense_Mutation_p.S216F|DCAF6_uc001gey.2_Missense_Mutation_p.S100F	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	247					positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTTATTCCTTCCCATCTTAAT	0.323000													16	71					0	0	0.000132079	0	0
BAT2L2	23215	broad.mit.edu	37	1	171553299	171553300	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:171553299_171553300CC>AA	uc010pmg.1	+	29	7874_7875	c.7608_7609CC>AA	c.(7606-7611)TCCCAG>TCAAAG	p.Q2537K	BAT2L2_uc010pmh.1_Missense_Mutation_p.Q1449K|BAT2L2_uc010pmi.1_Missense_Mutation_p.Q374K|BAT2L2_uc010pmj.1_Missense_Mutation_p.Q64K	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2537	Gln-rich.						protein C-terminus binding				0						TAGGAGGTTCCCAGCTGATTGA	0.446000													10	271					0	0	6.4e-05	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661302	176661302	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:176661302C>T	uc001gkz.2	+	6	3636	c.2472C>T	c.(2470-2472)GCC>GCT	p.A824A	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	824					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACCAAGTGGCCCGAATGCATT	0.483000											OREG0014001	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	127					0	0	0.000175454	0	0
C1orf125	126859	broad.mit.edu	37	1	179354411	179354411	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:179354411C>T	uc001gmo.2	+	9	907	c.780C>T	c.(778-780)ACC>ACT	p.T260T	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Silent_p.T48T|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.T260T	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	260											0						AGGAACAGACCATTTACAACA	0.353000													23	77					0	0	0.000375601	0	0
CACNA1E	777	broad.mit.edu	37	1	181767666	181767666	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:181767666C>T	uc001gow.2	+	47	6674	c.6509C>T	c.(6508-6510)TCT>TTT	p.S2170F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S2058F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1439F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2213	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCTTCCAACTCTCCGCACCCC	0.622000													45	19					0	0	0.000781405	0	0
FAM5C	339479	broad.mit.edu	37	1	190203593	190203593	+	Silent	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:190203593C>A	uc001gse.1	-	5	865	c.633G>T	c.(631-633)CGG>CGT	p.R211R	FAM5C_uc010pot.1_Silent_p.R109R	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	211						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GAGGACCAGTCCGTGTTTCTG	0.388000													32	98					2.81731e-10	2.95772e-09	0.000339439	1	0
KCNT2	343450	broad.mit.edu	37	1	196311223	196311223	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:196311223G>A	uc001gtd.1	-	15	1599	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Intron|KCNT2_uc001gtf.1_Silent_p.F513F|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.F513F|KCNT2_uc001gth.1_Silent_p.F34F	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	513	Cytoplasmic (Potential).|RCK N-terminal.					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TGTGTGCATGGAAAGAGGCAT	0.328000													107	45					0	0	0.000781405	0	0
FMOD	2331	broad.mit.edu	37	1	203316738	203316738	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:203316738C>T	uc001gzr.2	-	2	797	c.661G>A	c.(661-663)GGC>AGC	p.G221S	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	221	LRR 5.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			GACCGGAGGCCCCTCATGGAA	0.567000													99	57					0	0	0.000781405	0	0
NFASC	23114	broad.mit.edu	37	1	204985485	204985485	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:204985485A>C	uc001hbj.2	+	30	3869	c.3541A>C	c.(3541-3543)ACC>CCC	p.T1181P	NFASC_uc010pra.1_Missense_Mutation_p.T1115P|NFASC_uc001hbi.2_Missense_Mutation_p.T1110P|NFASC_uc010prb.1_Missense_Mutation_p.T1130P|NFASC_uc010prc.1_Missense_Mutation_p.T681P|NFASC_uc001hbl.1_Missense_Mutation_p.T257P|NFASC_uc001hbm.1_Missense_Mutation_p.T204P|NFASC_uc009xbh.1_Silent_p.A35A|NFASC_uc001hbo.1_Silent_p.A56A	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	1288	Cytoplasmic (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCTGGACGGCACCATCAAGCA	0.587000													89	69					0	0	0.000781405	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205308796	205308797	+	Nonsense_Mutation	DNP	GG	AA	AA	rs149498417		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:205308796_205308797GG>AA	uc001hcf.1	-	3	1084_1085	c.516_517CC>TT	c.(514-519)CTCCGA>CTTTGA	p.R173*	KLHDC8A_uc010prg.1_Nonsense_Mutation_p.R60*|KLHDC8A_uc001hcg.1_Nonsense_Mutation_p.R173*	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	173	Kelch 4.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			TTGGAGCCTCGGAGGAAGGAGG	0.550000													27	53					0	0	6.4e-05	0	0
IKBKE	9641	broad.mit.edu	37	1	206649649	206649650	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:206649649_206649650CG>AT	uc001hdz.1	+	6	852_853	c.484_485CG>AT	c.(484-486)CGG>ATG	p.R162M	IKBKE_uc009xbu.1_Missense_Mutation_p.R162M|IKBKE_uc009xbv.1_Missense_Mutation_p.R162M|IKBKE_uc001hea.1_Missense_Mutation_p.R77M	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	162	Protein kinase.				DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					CGGCGCTGCCCGGGAGCTGGAT	0.609000													6	82					0	0	6.4e-05	0	0
IL10	3586	broad.mit.edu	37	1	206944372	206944372	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:206944372C>T	uc001hen.1	-	3	317	c.258G>A	c.(256-258)ATG>ATA	p.M86I		NM_000572	NP_000563	P22301	IL10_HUMAN	interleukin 10 precursor	86					anti-apoptosis|B cell differentiation|B cell proliferation|cytoplasmic sequestering of NF-kappaB|inflammatory response|leukocyte chemotaxis|negative regulation of B cell proliferation|negative regulation of cytokine secretion involved in immune response|negative regulation of interferon-alpha biosynthetic process|negative regulation of interleukin-6 production|negative regulation of membrane protein ectodomain proteolysis|negative regulation of MHC class II biosynthetic process|negative regulation of T cell proliferation|positive regulation of B cell apoptosis|positive regulation of cytokine secretion|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|receptor biosynthetic process|regulation of isotype switching|response to glucocorticoid stimulus|type 2 immune response	extracellular space	cytokine activity|growth factor activity|interleukin-10 receptor binding				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.211)			AAAACTGGATCATCTCAGACA	0.572000													22	117					0	0	0.00047179	0	0
PROX1	5629	broad.mit.edu	37	1	214170203	214170203	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:214170203C>G	uc001hkh.2	+	2	597	c.325C>G	c.(325-327)CCC>GCC	p.P109A	PROX1_uc001hkg.1_Missense_Mutation_p.P109A	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	109					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		TGGCACGGAGCCCAGTTTCCA	0.488000													107	39					0	0	0.000781405	0	0
PRSS38	339501	broad.mit.edu	37	1	228033739	228033739	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:228033739A>G	uc001hrh.2	+	5	811	c.811A>G	c.(811-813)AAC>GAC	p.N271D		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	271	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						AGGCTGCTCCAACCCTCTGTA	0.542000													41	16					0	0	0.000319135	0	0
PCNXL2	80003	broad.mit.edu	37	1	233275548	233275548	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:233275548C>T	uc001hvl.2	-	20	3806	c.3571G>A	c.(3571-3573)GAA>AAA	p.E1191K	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1191						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				ATGTATTTTTCAAAACACTGA	0.368000													37	18					0	0	0.000270559	0	0
TBCE	6905	broad.mit.edu	37	1	235600750	235600750	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:235600750C>T	uc001hwz.1	+	12	1200	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.I359I|TBCE_uc010pxr.1_Silent_p.I410I|TBCE_uc001hxb.1_Silent_p.I246I	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	359	LRRCT.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			TACTCATTATCGCCAGCATTG	0.438000													18	77					0	0	0.000958276	0	0
ZP4	57829	broad.mit.edu	37	1	238049104	238049104	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:238049104G>A	uc001hym.2	-	7	922	c.922C>T	c.(922-924)CCT>TCT	p.P308S	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	308	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TGGGTCTCAGGAAAGGGTGGT	0.502000													18	64					0	0	0.000958276	0	0
FH	2271	broad.mit.edu	37	1	241680603	241680603	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:241680603G>A	uc001hyx.2	-	2	178	c.146C>T	c.(145-147)TCC>TTC	p.S49F		NM_000143	NP_000134	P07954	FUMH_HUMAN	fumarate hydratase precursor	49					fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			lung(3)|ovary(1)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		TATCCGGAAGGAATTTTGGCT	0.378000			Mis|N|F			lieomyomatosis|renal			Hereditary_Leiomyomatosis_and_Renal_Cell_Cancer				12	83					0	0	0.00010058	0	0
NLRP3	114548	broad.mit.edu	37	1	247587438	247587438	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:247587438G>A	uc001icr.2	+	5	831	c.693G>A	c.(691-693)GGG>GGA	p.G231G	NLRP3_uc001ics.2_Silent_p.G231G|NLRP3_uc001icu.2_Silent_p.G231G|NLRP3_uc001icw.2_Silent_p.G231G|NLRP3_uc001icv.2_Silent_p.G231G|NLRP3_uc010pyw.1_Silent_p.G229G|NLRP3_uc001ict.1_Silent_p.G229G	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	231	ATP (Potential).|NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CAGGGATTGGGAAAACAATCC	0.542000													14	64					0	0	0.000422831	0	0
OR2T33	391195	broad.mit.edu	37	1	248437021	248437021	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:248437021G>A	uc010pzi.1	-	1	96	c.96C>T	c.(94-96)ATC>ATT	p.I32I		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGGTCAAAACGATACTCAGAA	0.478000													13	84					0	0	0.000375601	0	0
OR14I1	401994	broad.mit.edu	37	1	248844733	248844733	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr1:248844733C>T	uc001ieu.1	-	1	873	c.873G>A	c.(871-873)AGG>AGA	p.R291R		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTCCTTATTCCTAAGACTAT	0.378000													18	111					0	0	0.000132079	0	0
TUBB8	347688	broad.mit.edu	37	10	93238	93238	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:93238G>C	uc001ifi.2	-	4	1094	c.1094C>G	c.(1093-1095)GCC>GGC	p.A365G	TUBB8_uc009xhe.2_Missense_Mutation_p.A328G|TUBB8_uc010pzs.1_Missense_Mutation_p.A293G	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	365					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		AATGAAGGTGGCTGACATTTT	0.498000													3	97					0	0	6.4e-05	0	0
PLXDC2	84898	broad.mit.edu	37	10	20290822	20290822	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:20290822G>A	uc001iqg.1	+	2	868	c.231G>A	c.(229-231)ACG>ACA	p.T77T	PLXDC2_uc001iqh.1_Silent_p.T77T	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	77	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CGGTAGACACGAACCGAGCAA	0.537000													17	21					0	0	0.000422831	0	0
C10orf113	387638	broad.mit.edu	37	10	21414799	21414799	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:21414799C>T	uc001iqm.2	-	2	411	c.391G>A	c.(391-393)GAA>AAA	p.E131K	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	141										ovary(3)|pancreas(1)	4						TTGAACTTTTCTTTTATGCCC	0.393000													58	77					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	10	30993467	30993467	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:30993467C>T	uc010qdx.1	+	7	1163	c.621C>T	c.(619-621)CAC>CAT	p.H207H						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		TGGAAGGACACCACAGGAGGC	0.567000													4	13					0	0	3.59834e-05	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999708	46999708	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:46999708G>A	uc001jec.2	+	3	963	c.828G>A	c.(826-828)GTG>GTA	p.V276V	GPRIN2_uc010qfq.1_Silent_p.V39V	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	276											0						AGCATGGGGTGAAGATCCACT	0.622000													14	34					0	0	0.000308642	0	0
FRMPD2	143162	broad.mit.edu	37	10	49395281	49395281	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:49395281C>T	uc001jgi.2	-	17	2327	c.2220G>A	c.(2218-2220)ATG>ATA	p.M740I	FRMPD2_uc001jgh.2_Missense_Mutation_p.M708I|FRMPD2_uc001jgj.2_Missense_Mutation_p.M718I	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	740					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGTCCCAGGTCATTGGCTTCT	0.592000													11	16					0	0	0.00010058	0	0
FRMPD2	143162	broad.mit.edu	37	10	49440321	49440321	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:49440321C>T	uc001jgi.2	-	10	1112	c.1005G>A	c.(1003-1005)GGG>GGA	p.G335G	FRMPD2_uc001jgh.2_Silent_p.G304G|FRMPD2_uc001jgj.2_Silent_p.G313G	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	335					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AATAGGATTTCCCTTTTTTGG	0.308000													16	17					0	0	0.000566183	0	0
CHAT	1103	broad.mit.edu	37	10	50827835	50827835	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:50827835G>A	uc001jhz.2	+	3	605	c.452G>A	c.(451-453)CGA>CAA	p.R151Q	CHAT_uc001jhv.1_Missense_Mutation_p.R33Q|CHAT_uc001jhx.1_Missense_Mutation_p.R33Q|CHAT_uc001jhy.1_Missense_Mutation_p.R33Q|CHAT_uc001jia.2_Missense_Mutation_p.R33Q|CHAT_uc010qgs.1_Missense_Mutation_p.R33Q	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	151				R -> Q (in Ref. 7; CAA39923).	neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	CAGTGCATGCGACACTTGGTG	0.617000													16	22					0	0	0.000422831	0	0
AGAP7	653268	broad.mit.edu	37	10	51464892	51464892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:51464892C>T	uc001jio.2	-	7	1690	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	522	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CTGCTCCCTTCCCAGATGCTG	0.542000													39	127					0	0	0.000191422	0	0
BICC1	80114	broad.mit.edu	37	10	60549476	60549476	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:60549476G>A	uc001jki.1	+	8	830	c.830G>A	c.(829-831)GGG>GAG	p.G277E		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	277					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						CATCTTGCTGGGAGCTTAGCA	0.408000													60	111					0	0	0.000781405	0	0
BICC1	80114	broad.mit.edu	37	10	60558926	60558926	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:60558926C>T	uc001jki.1	+	12	1639	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S	BICC1_uc001jkj.1_Missense_Mutation_p.P188S	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	547					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						ATCTCCCCCTCCTGGCTTGAC	0.463000													13	17					0	0	0.00010058	0	0
BICC1	80114	broad.mit.edu	37	10	60559999	60559999	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:60559999G>A	uc001jki.1	+	13	1771	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	BICC1_uc001jkj.1_Missense_Mutation_p.E232K	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	591					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						ATCACTTGGAGAAAAAGTGCT	0.383000													14	30					0	0	0.000132079	0	0
FAM13C	220965	broad.mit.edu	37	10	61029749	61029749	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:61029749G>A	uc001jkn.2	-	8	847	c.713C>T	c.(712-714)TCG>TTG	p.S238L	FAM13C_uc001jko.2_Missense_Mutation_p.S238L|FAM13C_uc010qid.1_Missense_Mutation_p.S155L|FAM13C_uc010qie.1_Missense_Mutation_p.S155L|FAM13C_uc010qif.1_Missense_Mutation_p.S260L|FAM13C_uc001jkp.2_Missense_Mutation_p.S155L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	238										ovary(2)	2						GCATCGTGGCGACAGCAGTGG	0.542000													18	36					0	0	0.000958276	0	0
ANK3	288	broad.mit.edu	37	10	61833842	61833842	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:61833842C>T	uc001jky.2	-	37	6989	c.6797G>A	c.(6796-6798)AGA>AAA	p.R2266K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2266					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTCTTCAATTCTTTCAGATGC	0.463000													43	72					0	0	0.000437636	0	0
CTNNA3	29119	broad.mit.edu	37	10	69281711	69281711	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:69281711C>T	uc009xpn.1	-	5	591	c.468G>A	c.(466-468)AGG>AGA	p.R156R	CTNNA3_uc001jmw.2_Silent_p.R156R|CTNNA3_uc001jmx.3_Silent_p.R156R|CTNNA3_uc009xpo.1_Silent_p.R16R|CTNNA3_uc001jna.2_Silent_p.R168R	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	156					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						ACTCAAATGTCCTTTGAAACT	0.378000													17	28					0	0	0.000958276	0	0
SFTPD	6441	broad.mit.edu	37	10	81701173	81701173	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:81701173C>T	uc001kbh.2	-	6	691	c.648G>A	c.(646-648)AAG>AAA	p.K216K	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	216	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CACTTTCTCCCTTTGCTCCTT	0.637000													9	24					0	0	0.000274275	0	0
NRG3	10718	broad.mit.edu	37	10	84738862	84738862	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:84738862G>A	uc001kco.2	+	8	1596	c.1569G>A	c.(1567-1569)ACG>ACA	p.T523T	NRG3_uc010qlz.1_Silent_p.T522T|NRG3_uc001kcp.2_Silent_p.T302T|NRG3_uc001kcq.2_Silent_p.T173T|NRG3_uc001kcr.2_Silent_p.T173T	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	523	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		ACCAGGATACGATACCTTGCC	0.468000													19	25					0	0	0.000295444	0	0
PLCE1	51196	broad.mit.edu	37	10	96043626	96043626	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:96043626G>A	uc001kjk.2	+	21	5509	c.4875G>A	c.(4873-4875)AAG>AAA	p.K1625K	PLCE1_uc010qnx.1_Silent_p.K1609K|PLCE1_uc001kjm.2_Silent_p.K1317K|PLCE1_uc001kjp.2_5'Flank|uc001kjo.1_Intron	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1625					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAATCCCAAAGAGGATAAAGA	0.368000													18	24					0	0	0.000132079	0	0
CYP2C8	1558	broad.mit.edu	37	10	96798740	96798740	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:96798740G>A	uc001kkb.2	-	8	1300	c.1205C>T	c.(1204-1206)CCT>CTT	p.P402L	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.P332L|CYP2C8_uc010qob.1_Missense_Mutation_p.P316L|CYP2C8_uc010qoc.1_Missense_Mutation_p.P300L|CYP2C8_uc010qod.1_3'UTR	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	402					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	ATTTGGATTAGGAAATTCTTT	0.378000													25	42					0	0	0.000720815	0	0
CYP2C8	1558	broad.mit.edu	37	10	96826994	96826994	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:96826994C>T	uc001kkb.2	-	3	547	c.452G>A	c.(451-453)TGC>TAC	p.C151Y	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.C81Y|CYP2C8_uc010qob.1_Missense_Mutation_p.C65Y|CYP2C8_uc010qoc.1_Missense_Mutation_p.C49Y|CYP2C8_uc010qod.1_Missense_Mutation_p.C65Y	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	151					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CTCCACAAGGCAGTGAGCTTC	0.498000													41	66					0	0	0.000781405	0	0
DNMBP	23268	broad.mit.edu	37	10	101716647	101716647	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:101716647G>A	uc001kqj.2	-	4	676	c.584C>T	c.(583-585)CCA>CTA	p.P195L	NCRNA00093_uc001kqk.1_RNA	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	195	SH3 3.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		AAAACCTTCTGGAAAAATGCC	0.483000													21	47					0	0	0.000295444	0	0
CCDC147	159686	broad.mit.edu	37	10	106152021	106152021	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:106152021C>T	uc001kyh.2	+	10	1530	c.1396C>T	c.(1396-1398)CGT>TGT	p.R466C		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	466	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		CATAAAAGTTCGTGAAACACA	0.358000													55	97					0	0	0.000781405	0	0
CASP7	840	broad.mit.edu	37	10	115489090	115489090	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:115489090C>T	uc001lan.2	+	7	877	c.703C>T	c.(703-705)CCA>TCA	p.P235S	CASP7_uc001lam.2_Silent_p.A223A|CASP7_uc001lao.2_Missense_Mutation_p.P268S|CASP7_uc001lap.2_Missense_Mutation_p.P235S|CASP7_uc001laq.2_Missense_Mutation_p.P235S|CASP7_uc010qsa.1_Missense_Mutation_p.P320S|CASP7_uc010qsb.1_Missense_Mutation_p.P210S	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	235					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		GTGGAGGAGCCCAGGAAGAGG	0.507000													36	85					0	0	0.000374591	0	0
ATRNL1	26033	broad.mit.edu	37	10	117061512	117061512	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:117061512C>T	uc001lcg.2	+	17	3163	c.2777C>T	c.(2776-2778)CCA>CTA	p.P926L	ATRNL1_uc010qsm.1_Missense_Mutation_p.P101L|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	926	PSI 4.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ATCTCTTTTCCATATGGACAA	0.418000													25	46					0	0	0.000227799	0	0
KIAA1598	57698	broad.mit.edu	37	10	118671344	118671344	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:118671344G>A	uc009xyw.2	-	14	1814	c.1316C>T	c.(1315-1317)TCG>TTG	p.S439L	KIAA1598_uc001lcz.3_Missense_Mutation_p.S439L|KIAA1598_uc010qso.1_Missense_Mutation_p.S379L|KIAA1598_uc010qsp.1_Missense_Mutation_p.S439L|KIAA1598_uc010qsq.1_Missense_Mutation_p.S379L|KIAA1598_uc001lcy.3_Missense_Mutation_p.S409L	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	439					axon guidance	axon					0				all cancers(201;0.00494)		GCAGCCTTTCGAAGATTCTGG	0.308000													44	90					0	0	0.000781405	0	0
MKI67	4288	broad.mit.edu	37	10	129904640	129904640	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:129904640G>A	uc001lke.2	-	13	5659	c.5464C>T	c.(5464-5466)CGT>TGT	p.R1822C	MKI67_uc001lkf.2_Missense_Mutation_p.R1462C|MKI67_uc009yav.1_Missense_Mutation_p.R1397C|MKI67_uc009yaw.1_Missense_Mutation_p.R972C	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1822	7.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTTTCCTTACGAGTTTGTAGC	0.473000													38	87					0	0	0.000191422	0	0
EBF3	253738	broad.mit.edu	37	10	131638545	131638545	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:131638545G>A	uc001lki.1	-	15	1647	c.1588C>T	c.(1588-1590)CCT>TCT	p.P530S		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	575					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GTGCAGGAAGGAGGAGGAGAG	0.567000													5	4					0	0	0.000157383	0	0
CYP2E1	1571	broad.mit.edu	37	10	135350614	135350614	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:135350614C>T	uc001lnj.1	+	7	1048	c.1015C>T	c.(1015-1017)CCT>TCT	p.P339S	CYP2E1_uc001lnk.1_Missense_Mutation_p.P202S|CYP2E1_uc009ybl.1_Missense_Mutation_p.P140S|CYP2E1_uc009ybm.1_5'UTR|CYP2E1_uc001lnl.1_Missense_Mutation_p.P140S	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	339					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	AAGCCGAATCCCTGCCATCAA	0.527000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				18	21					0	0	0.000175454	0	0
MUC2	4583	broad.mit.edu	37	11	1103193	1103193	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:1103193G>C	uc001lsx.1	+	49	15056	c.15029G>C	c.(15028-15030)GGG>GCG	p.G5010A		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	5010						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCACAGCCCGGGGACTTCAAG	0.637000													3	42					0	0	0.000602214	0	0
KCNQ1	3784	broad.mit.edu	37	11	2606441	2606441	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:2606441G>A	uc001lwn.2	+	8	1141	c.1033_splice	c.e8-1	p.G345_splice	KCNQ1_uc009ydp.1_Splice_Site_p.G129_splice|KCNQ1_uc001lwo.2_Splice_Site_p.G218_splice	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like						blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TTCCTTCCCAGGGGATTCTTG	0.627000													42	93					0	0	0.000781405	0	0
KCNQ1	3784	broad.mit.edu	37	11	2606443	2606443	+	Missense_Mutation	SNP	G	C	C	rs120074183		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:2606443G>C	uc001lwn.2	+	8	1142	c.1034G>C	c.(1033-1035)GGG>GCG	p.G345A	KCNQ1_uc009ydp.1_Missense_Mutation_p.G129A|KCNQ1_uc001lwo.2_Missense_Mutation_p.G218A	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	345	Helical; Name=Segment S6; (Potential).		G -> R (in LQT1; familial sudden death).|G -> E (in LQT1).		blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CCTTCCCAGGGGATTCTTGGC	0.632000													44	93					0	0	0.000781405	0	0
OR51L1	119682	broad.mit.edu	37	11	5020616	5020616	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5020616C>G	uc010qyu.1	+	1	404	c.404C>G	c.(403-405)CCC>CGC	p.P135R		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTGCACTACCCCACCATCCTC	0.488000													4	139					0	0	0.000602214	0	0
OR52E2	119678	broad.mit.edu	37	11	5079927	5079927	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5079927C>T	uc010qyw.1	-	1	931	c.931G>A	c.(931-933)GAA>AAA	p.E311K		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		ATTCCTTGTTCCTGCAATAAT	0.348000													36	56					0	0	0.000953801	0	0
HBG2	3048	broad.mit.edu	37	11	5275676	5275676	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5275676G>A	uc001mai.1	-	2	598	c.161C>T	c.(160-162)GCC>GTC	p.A54V	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.A54V	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	54					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCCATGATGGCAGAGGCAGA	0.522000													11	90					0	0	0.000953801	0	0
OR51B4	79339	broad.mit.edu	37	11	5322389	5322389	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5322389T>A	uc010qza.1	-	1	788	c.788A>T	c.(787-789)AAA>ATA	p.K263I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGTGCATGTTTCCCAAACCT	0.423000													18	33					0	0	0.000229342	0	0
OR51B4	79339	broad.mit.edu	37	11	5322697	5322697	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5322697G>A	uc010qza.1	-	1	480	c.480C>T	c.(478-480)CTC>CTT	p.L160L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTAGCAGTAGAGTGAAAGAA	0.438000													35	48					0	0	0.00058488	0	0
OR51B2	79345	broad.mit.edu	37	11	5345000	5345000	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5345000G>A	uc001mao.1	-	1	583	c.528C>T	c.(526-528)TTC>TTT	p.F176F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGGAGGCAGAAAGCACGTG	0.388000													28	37					0	0	0.000279167	0	0
OR51B2	79345	broad.mit.edu	37	11	5345040	5345040	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5345040G>A	uc001mao.1	-	1	543	c.488C>T	c.(487-489)TCA>TTA	p.S163L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATATGAAAATGAAAAAAGACG	0.398000													22	47					0	0	0.000229342	0	0
OR51M1	390059	broad.mit.edu	37	11	5411565	5411565	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5411565C>A	uc010qzc.1	+	1	937	c.937C>A	c.(937-939)CGT>AGT	p.R313S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	313						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGAGATCCACCGTGCCATTAT	0.463000													5	10					0.000157383	0.00163633	0.000157383	1	0
OR52E4	390081	broad.mit.edu	37	11	5906378	5906378	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:5906378C>T	uc010qzs.1	+	1	856	c.856C>T	c.(856-858)CCT>TCT	p.P286S	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTTGTCCCACCTGCCCTTAA	0.378000													29	52					0	0	0.000339439	0	0
OR52L1	338751	broad.mit.edu	37	11	6007627	6007627	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:6007627G>A	uc001mcd.2	-	1	589	c.534C>T	c.(532-534)CCC>CCT	p.P178P		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	178	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAACAAAATGGGGAAGGGGA	0.502000													19	43					0	0	0.000132079	0	0
OR56B4	196335	broad.mit.edu	37	11	6129011	6129011	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:6129011G>A	uc010qzx.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCCATTCCATGGATACCTCCA	0.413000													18	24					0	0	0.000229342	0	0
DCHS1	8642	broad.mit.edu	37	11	6655175	6655175	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:6655175C>G	uc001mem.1	-	4	2473	c.2063G>C	c.(2062-2064)CGG>CCG	p.R688P		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	688	Cadherin 7.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCATACTCCCGTGGATAAAA	0.557000													3	56					0	0	0.00024832	0	0
OR10A4	283297	broad.mit.edu	37	11	6897920	6897920	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:6897920C>T	uc010rat.1	+	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AATTTGTTCTCGTGAGCTTCT	0.433000													37	63					0	0	0.000437636	0	0
IPO7	10527	broad.mit.edu	37	11	9459655	9459655	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:9459655G>T	uc001mho.2	+	22	2660	c.2518G>T	c.(2518-2520)GGA>TGA	p.G840*		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	840					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		GTGTGTTCTCGGACTCTGTGC	0.318000													6	209					0.000274275	0.00284253	0.000274275	1	0
ZNF143	7702	broad.mit.edu	37	11	9530248	9530248	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:9530248C>T	uc001mhr.2	+	12	1348	c.1230C>T	c.(1228-1230)GTC>GTT	p.V410V	ZNF143_uc009yfu.2_Silent_p.V409V|ZNF143_uc010rby.1_Silent_p.V379V	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	410	C2H2-type 6.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		ATCATGTTGTCCACACTCATT	0.443000													11	21					0	0	6.40141e-05	0	0
MICAL2	9645	broad.mit.edu	37	11	12263965	12263965	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:12263965G>A	uc001mjz.2	+	19	2830	c.2542G>A	c.(2542-2544)GAA>AAA	p.E848K	MICAL2_uc010rch.1_Intron|MICAL2_uc001mka.2_Missense_Mutation_p.E848K|MICAL2_uc010rci.1_Missense_Mutation_p.E848K|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Intron|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	848						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GCAAGTGGAGGAAAAGATTCT	0.597000													10	21					0	0	0.000673444	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18158857	18158857	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:18158857C>T	uc001mnu.2	+	3	469	c.108C>T	c.(106-108)ATC>ATT	p.I36I		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	36	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TGACGTGCATCGTTTCCCTTG	0.582000													38	64					0	0	0.000680045	0	0
IGSF22	283284	broad.mit.edu	37	11	18730998	18730998	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:18730998C>T	uc009yht.2	-	18	3124	c.2934G>A	c.(2932-2934)GTG>GTA	p.V978V	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	877	Fibronectin type-III 2.									ovary(4)|large_intestine(2)|kidney(1)	7						CAGCCTCATTCACAGCCCGGA	0.582000													16	36					0	0	0.000958276	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956084	18956084	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:18956084G>A	uc001mpg.2	-	1	466	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	83	Helical; Name=2; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCTTAACAGGGAATATATAAG	0.522000													59	132					0	0	0.000781405	0	0
DCDC1	341019	broad.mit.edu	37	11	31329440	31329440	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:31329440G>A	uc001msv.2	-	4	382	c.180C>T	c.(178-180)TCC>TCT	p.S60S	DCDC1_uc001msu.1_5'UTR	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	60					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					CTTTTGCCTGGGATGACATAA	0.328000													33	49					0	0	0.00058488	0	0
F2	2147	broad.mit.edu	37	11	46747657	46747657	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:46747657G>A	uc001ndf.3	+	7	851	c.808G>A	c.(808-810)GAG>AAG	p.E270K	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	270	Kringle 2.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	CGGGGATGAGGAGGGCGTGTG	0.627000													28	44					0	0	0.000491102	0	0
OR4C12	283093	broad.mit.edu	37	11	50003771	50003771	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:50003771G>A	uc010ria.1	-	1	267	c.267C>T	c.(265-267)ATC>ATT	p.I89I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAAAGGAGATGATTTTCTTCT	0.428000													49	90					0	0	0.000781405	0	0
OR5W2	390148	broad.mit.edu	37	11	55681147	55681147	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:55681147C>T	uc010rir.1	-	1	912	c.912G>A	c.(910-912)CTG>CTA	p.L304L		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ttttatttttCAGTTTTTTCA	0.303000													12	12					0	0	0.00010058	0	0
OR5W2	390148	broad.mit.edu	37	11	55681516	55681516	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:55681516G>A	uc010rir.1	-	1	543	c.543C>T	c.(541-543)ATC>ATT	p.I181I		NM_001001960	NP_001001960	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGAGAGGAGGGATATCACAGA	0.403000													14	33					0	0	0.000219431	0	0
OR5M9	390162	broad.mit.edu	37	11	56230572	56230572	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:56230572G>A	uc010rjj.1	-	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CAACGGCAATGAAAAAGTAGC	0.468000													38	48					0	0	0.000781405	0	0
OR5A2	219981	broad.mit.edu	37	11	59190346	59190346	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:59190346G>A	uc010rkt.1	-	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATGAAAAGGAAAATCTTCA	0.453000													36	46					0	0	0.000191422	0	0
OR10V1	390201	broad.mit.edu	37	11	59480799	59480799	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:59480799C>T	uc001nof.1	-	1	520	c.520G>A	c.(520-522)GAG>AAG	p.E174K		NM_001005324	NP_001005324	Q8NGI7	O10V1_HUMAN	olfactory receptor, family 10, subfamily V,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGTAGATCTCATCATTGTGG	0.507000													20	33					0	0	0.000295444	0	0
GIF	2694	broad.mit.edu	37	11	59610595	59610595	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:59610595G>A	uc001noi.2	-	3	324	c.276C>T	c.(274-276)CTC>CTT	p.L92L	GIF_uc010rkz.1_Silent_p.L92L	NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	92					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						TGGTGAGGCCGAGCTGCCCAA	0.527000													14	28					0	0	0.000422831	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105226	60105226	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:60105226C>T	uc001npd.2	+	2	174	c.160C>T	c.(160-162)CTG>TTG	p.L54L		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	54	Helical; (Potential).					integral to membrane	receptor activity				0						GCATAGCAGCCTGGCTGGAAG	0.483000													30	48					0	0	0.000409698	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793527	65793527	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:65793527G>A	uc001ogt.2	-	1	462	c.324C>T	c.(322-324)CAC>CAT	p.H108H		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	108	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						CGTAGGAACGGTGGGAGGGGA	0.607000													39	51					0	0	0.000781405	0	0
PDE2A	5138	broad.mit.edu	37	11	72297172	72297172	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:72297172G>A	uc010rrc.1	-	14	1367	c.1124C>T	c.(1123-1125)ACC>ATC	p.T375I	PDE2A_uc001oso.2_Missense_Mutation_p.T354I|PDE2A_uc010rra.1_Missense_Mutation_p.T368I|PDE2A_uc001osn.2_Missense_Mutation_p.T119I|PDE2A_uc010rrb.1_Missense_Mutation_p.T366I|PDE2A_uc010rrd.1_Missense_Mutation_p.T260I	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	375	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	GGTGAGCACGGTGCTGGTGTA	0.602000											OREG0021196	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	75					0	0	0.000781405	0	0
NAALAD2	10003	broad.mit.edu	37	11	89868839	89868839	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:89868839G>A	uc001pdf.3	+	2	303	c.194_splice	c.e2+1	p.R65_splice	NAALAD2_uc009yvx.2_Splice_Site_p.R65_splice|NAALAD2_uc009yvy.2_Splice_Site_p.R65_splice|NAALAD2_uc001pdd.2_Splice_Site_p.R65_splice|NAALAD2_uc001pde.2_Splice_Site_p.R65_splice	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2						proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CATTTCTTCGGTAAGTTTATT	0.353000													20	17					0	0	0.000958276	0	0
FAT3	120114	broad.mit.edu	37	11	92531001	92531001	+	Splice_Site	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:92531001G>C	uc001pdj.3	+	9	4840	c.4823_splice	c.e9-1	p.G1608_splice		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3						homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTGTATTTTAGGGAACACTGG	0.403000										TCGA Ovarian(4;0.039)			4	188					0	0	0.000602214	0	0
PIWIL4	143689	broad.mit.edu	37	11	94310540	94310540	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:94310540C>T	uc001pfa.2	+	4	606	c.395C>T	c.(394-396)CCA>CTA	p.P132L	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	132					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ACATATATTCCAGATTTAGCA	0.398000													20	38					0	0	0.000132079	0	0
CNTN5	53942	broad.mit.edu	37	11	99715598	99715598	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:99715598G>A	uc001pga.2	+	5	631	c.292G>A	c.(292-294)GGG>AGG	p.G98R	CNTN5_uc009ywv.1_Missense_Mutation_p.G98R|CNTN5_uc001pfz.2_Missense_Mutation_p.G98R|CNTN5_uc001pgb.2_Missense_Mutation_p.G24R	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	98					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGTGGACTATGGGCCAGTTTT	0.333000													52	69					0	0	0.000781405	0	0
DLAT	1737	broad.mit.edu	37	11	111899614	111899614	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:111899614C>T	uc001pmo.2	+	4	1264	c.605C>T	c.(604-606)TCG>TTG	p.S202L	DLAT_uc009yyk.1_Missense_Mutation_p.S202L|DLAT_uc010rwr.1_Intron	NM_001931	NP_001922	P10515	ODP2_HUMAN	dihydrolipoamide S-acetyltransferase precursor	202					glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase activity|protein binding				0		all_cancers(61;4.53e-11)|all_epithelial(67;2.76e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;4.87e-07)|BRCA - Breast invasive adenocarcinoma(274;6.83e-07)|all cancers(92;9.63e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0557)	NADH(DB00157)	GCCACTGCTTCGCCACCTACA	0.532000													40	56					0	0	0.000437636	0	0
SORL1	6653	broad.mit.edu	37	11	121500230	121500230	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:121500230G>A	uc001pxx.2	+	48	6683	c.6603G>A	c.(6601-6603)ATG>ATA	p.M2201I	SORL1_uc010rzp.1_Missense_Mutation_p.M1047I|SORL1_uc010rzq.1_Missense_Mutation_p.M816I	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2201	Cytoplasmic (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATGCCCCTATGATAACTGGAT	0.423000													26	49					0	0	0.000279167	0	0
KIRREL3	84623	broad.mit.edu	37	11	126396485	126396485	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:126396485G>A	uc001qea.2	-	3	592	c.231C>T	c.(229-231)TTC>TTT	p.F77F	KIRREL3_uc001qeb.2_Silent_p.F77F|KIRREL3_uc001qec.1_Silent_p.F77F	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	77	Ig-like C2-type 1.|Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		TCCACAGAACGAAGCCATCGT	0.612000													10	4					0	0	0.000673444	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781789	128781789	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:128781789C>T	uc001qet.2	+	2	935	c.621C>T	c.(619-621)GTC>GTT	p.V207V	KCNJ5_uc009zck.2_Silent_p.V207V|KCNJ5_uc001qew.2_Silent_p.V207V	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	207	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	ACAACGCAGTCATCTCCATGC	0.577000													24	30					0	0	0.000586117	0	0
BARX2	8538	broad.mit.edu	37	11	129306656	129306656	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr11:129306656C>T	uc001qfc.3	+	2	248	c.198C>T	c.(196-198)TCC>TCT	p.S66S		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	66											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		GCTCCCCTTCCCTGCGGGCAT	0.672000													51	74					0	0	0.000781405	0	0
VWF	7450	broad.mit.edu	37	12	6091093	6091093	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:6091093G>A	uc001qnn.1	-	42	7396	c.7146C>T	c.(7144-7146)ACC>ACT	p.T2382T	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2382					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	TCTTCCGAAGGGTGGGCAAAC	0.602000													31	33					0	0	0.000339439	0	0
LRRC23	10233	broad.mit.edu	37	12	7021927	7021927	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:7021927C>T	uc001qrt.3	+	7	1184	c.792C>T	c.(790-792)GCC>GCT	p.A264A	LRRC23_uc001qrp.2_Silent_p.A264A|LRRC23_uc001qrq.2_Intron|LRRC23_uc001qrr.2_Silent_p.A213A|LRRC23_uc001qrs.2_Intron|LRRC23_uc009zfh.2_Intron|ENO2_uc001qru.1_5'Flank|ENO2_uc009zfi.1_5'Flank|ENO2_uc010sfq.1_5'Flank|ENO2_uc001qrv.1_5'Flank	NM_001135217	NP_001128689	Q53EV4	LRC23_HUMAN	leucine rich repeat containing 23 isoform a	264	LRR 8.									ovary(1)	1						GGGAGCTGGCCAAGCTTCGAG	0.597000													18	40					0	0	0.000132079	0	0
CLEC4C	170482	broad.mit.edu	37	12	7883483	7883483	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:7883483C>T	uc001qtg.1	-	5	581	c.407G>A	c.(406-408)AGA>AAA	p.R136K	CLEC4C_uc001qth.1_Missense_Mutation_p.R136K|CLEC4C_uc001qti.1_Missense_Mutation_p.R105K	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	136	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		AGAAGAATTTCTTTTCAGATT	0.333000													25	44					0	0	0.000878237	0	0
GPRC5A	9052	broad.mit.edu	37	12	13065068	13065068	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:13065068C>T	uc001rba.2	+	3	1623	c.973C>T	c.(973-975)CAG>TAG	p.Q325*		NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	325	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	CACACATTTTCAGCTGCAGGT	0.433000													13	29					0	0	0.000219431	0	0
ART4	420	broad.mit.edu	37	12	14982347	14982347	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:14982347G>A	uc001rcl.1	-	3	1269	c.903C>T	c.(901-903)TCC>TCT	p.S301S	ART4_uc009zid.1_RNA|ART4_uc009zie.1_RNA	NM_021071	NP_066549	Q93070	NAR4_HUMAN	ADP-ribosyltransferase 4 precursor	301					arginine metabolic process|protein ADP-ribosylation	anchored to membrane|plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity				0						TGGTCAAAAAGGAGAGAGATG	0.289000													18	37					0	0	0.000375601	0	0
ABCC9	10060	broad.mit.edu	37	12	21960321	21960321	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:21960321G>A	uc001rfi.1	-	36	4428	c.4408C>T	c.(4408-4410)CTT>TTT	p.L1470F	ABCC9_uc001rfh.2_Missense_Mutation_p.L1470F|ABCC9_uc001rfj.1_Missense_Mutation_p.L1434F|ABCC9_uc001rfg.2_5'UTR	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1470	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCCATAATAAGAATGCTGCTT	0.423000													46	75					0	0	0.000781405	0	0
KIAA0528	9847	broad.mit.edu	37	12	22678631	22678631	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:22678631C>A	uc001rfq.2	-	5	586	c.358G>T	c.(358-360)GGG>TGG	p.G120W	KIAA0528_uc010sir.1_5'UTR|KIAA0528_uc010sis.1_Missense_Mutation_p.G120W|KIAA0528_uc010sit.1_Missense_Mutation_p.G120W|KIAA0528_uc010siu.1_Missense_Mutation_p.G120W|KIAA0528_uc001rfr.2_Missense_Mutation_p.G120W|KIAA0528_uc009ziy.1_Missense_Mutation_p.G120W	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	120							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TTGATTTCCCCACGGATACCT	0.279000													10	260					0.000673444	0.00694603	0.000673444	1	0
CASC1	55259	broad.mit.edu	37	12	25311445	25311445	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:25311445C>T	uc001rgl.2	-	3	223	c.141G>A	c.(139-141)CAG>CAA	p.Q47Q	CASC1_uc001rgk.2_Silent_p.Q53Q|CASC1_uc001rgm.3_Silent_p.Q111Q|CASC1_uc001rgj.2_Silent_p.Q7Q|CASC1_uc010sje.1_Intron|CASC1_uc010sjf.1_Intron|CASC1_uc010sjg.1_Silent_p.Q47Q|CASC1_uc010sjh.1_RNA	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	47	Glu-rich.									ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			TCTCAATTCGCTGTATTTCAA	0.294000													20	37					0	0	0.000375601	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43824181	43824181	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:43824181C>T	uc010skx.1	-	23	3355	c.3355G>A	c.(3355-3357)GAA>AAA	p.E1119K	ADAMTS20_uc001rno.1_Missense_Mutation_p.E273K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.E273K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1119	TSP type-1 6.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CGACTAGCTTCATGGCATTCT	0.388000													20	25					0	0	0.000175454	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43840439	43840439	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:43840439G>A	uc010skx.1	-	15	2156	c.2156C>T	c.(2155-2157)TCA>TTA	p.S719L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	719	Cys-rich.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGTCTTGCATGAAGAGTTGTC	0.378000													19	35					0	0	0.00047179	0	0
ARID2	196528	broad.mit.edu	37	12	46215212	46215212	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:46215212C>T	uc001ros.1	+	6	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F	ARID2_uc001ror.2_Missense_Mutation_p.S216F	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	216					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GCTTTAGGATCCTTTTCCACT	0.254000													48	93					0	0	0.000781405	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420820	55420820	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:55420820C>T	uc001sgp.3	+	2	975	c.597C>T	c.(595-597)GTC>GTT	p.V199V		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	199					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CCATCTCTGTCCACAACTTCA	0.502000													34	55					0	0	0.000814825	0	0
OR6C75	390323	broad.mit.edu	37	12	55759590	55759590	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:55759590G>A	uc010spk.1	+	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TGAGTCAAAGGAAAAAAGCCT	0.398000													25	41					0	0	0.000375601	0	0
IRAK3	11213	broad.mit.edu	37	12	66605284	66605284	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:66605284C>T	uc001sth.2	+	5	597	c.495C>T	c.(493-495)TTC>TTT	p.F165F	IRAK3_uc010ssy.1_Silent_p.F104F	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	165	Protein kinase.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		CTAGAAATTTCCACAAAGACT	0.353000													19	29					0	0	0.000958276	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72008476	72008476	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:72008476G>A	uc001swo.2	-	30	5724	c.5365C>T	c.(5365-5367)CTT>TTT	p.L1789F		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1789	HAT 4.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCAAAGACAAGATAACTGCCA	0.353000													39	72					0	0	0.000374591	0	0
TRHDE	29953	broad.mit.edu	37	12	72969300	72969300	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:72969300G>A	uc001sxa.2	+	12	2194	c.2164G>A	c.(2164-2166)GAT>AAT	p.D722N		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	722	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GGGCTTGATCGATGATGCCTT	0.388000													27	50					0	0	0.000279167	0	0
SLC17A8	246213	broad.mit.edu	37	12	100813667	100813667	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:100813667C>T	uc010svi.1	+	12	1813	c.1500C>T	c.(1498-1500)GTC>GTT	p.V500V	SLC17A8_uc009ztx.2_Silent_p.V450V	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	500	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TCTATGGGGTCTTTGCTTCTG	0.463000													28	56					0	0	0.000279167	0	0
PAH	5053	broad.mit.edu	37	12	103245521	103245521	+	Missense_Mutation	SNP	C	T	T	rs62508739		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:103245521C>T	uc001tjq.1	-	9	1328	c.856G>A	c.(856-858)GAG>AAG	p.E286K		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	286					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	CCCAACAGCTCATGGCAGATG	0.483000													12	33					0	0	0.000151284	0	0
MYL2	4633	broad.mit.edu	37	12	111353546	111353546	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:111353546C>T	uc001try.3	-	3	213	c.142G>A	c.(142-144)GAT>AAT	p.D48N	MYL2_uc001trx.3_Missense_Mutation_p.D29N	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	48	|EF-hand 1.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						TCTCTCAGATCGTTCTTGTCA	0.527000													55	88					0	0	0.000781405	0	0
NOS1	4842	broad.mit.edu	37	12	117696933	117696933	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:117696933C>T	uc001twm.1	-	15	3056	c.2370G>A	c.(2368-2370)GTG>GTA	p.V790V	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	790	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CCATGGACATCACCTAGGTGG	0.328000													10	31					0	0	0.000442599	0	0
MLXIP	22877	broad.mit.edu	37	12	122622068	122622068	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr12:122622068C>T	uc001ubq.2	+	12	2085	c.2085C>T	c.(2083-2085)AGC>AGT	p.S695S	MLXIP_uc001ubt.2_Silent_p.S302S	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	695					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		CGGAGCAGAGCCCCAGTCCTC	0.597000													24	27					0	0	0.00047179	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455196	84455196	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:84455196G>A	uc001vlk.2	-	1	1333	c.447C>T	c.(445-447)GCC>GCT	p.A149A		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	149	LRR 4.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		AGTCCTGGAAGGCCCCCGGGT	0.473000													30	43					0	0	0.000339439	0	0
CLYBL	171425	broad.mit.edu	37	13	100511253	100511253	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:100511253C>T	uc001vok.2	+	3	402	c.388C>T	c.(388-390)CCT>TCT	p.P130S	CLYBL_uc010tix.1_Missense_Mutation_p.P130S|CLYBL_uc010tiy.1_Missense_Mutation_p.P130S	NM_206808	NP_996531	Q8N0X4	CLYBL_HUMAN	citrate lyase beta like precursor	130					cellular aromatic compound metabolic process	citrate lyase complex|mitochondrion	citrate (pro-3S)-lyase activity|metal ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CCGGGTCCTTCCTTCCAGCCT	0.498000													12	14					0	0	0.000151284	0	0
NALCN	259232	broad.mit.edu	37	13	102029401	102029401	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:102029401C>T	uc001vox.1	-	5	571	c.382G>A	c.(382-384)GAA>AAA	p.E128K	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.E128K|NALCN_uc001vpa.2_Missense_Mutation_p.E128K	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	128	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCAGCAATTTCAAACACCTAC	0.408000													18	21					0	0	0.000175454	0	0
FGF14	2259	broad.mit.edu	37	13	102521126	102521126	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:102521126C>T	uc001vpe.2	-	3	357	c.357G>A	c.(355-357)GTG>GTA	p.V119V	FGF14_uc001vpf.2_Silent_p.V124V	NM_004115	NP_004106	Q92915	FGF14_HUMAN	fibroblast growth factor 14 isoform 1A	119					cell death|cell-cell signaling|JNK cascade|nervous system development|signal transduction	nucleus	growth factor activity|heparin binding			ovary(2)|lung(1)|large_intestine(1)	4	all_neural(89;0.0239)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ACCCTGTTTTCACTCCCTGGA	0.448000													31	54					0	0	0.000692331	0	0
ZNF828	283489	broad.mit.edu	37	13	115089484	115089484	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:115089484A>T	uc010ahb.2	+	3	496	c.167A>T	c.(166-168)CAG>CTG	p.Q56L	ZNF828_uc001vuv.2_Missense_Mutation_p.Q56L|ZNF828_uc010tko.1_Missense_Mutation_p.Q56L	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	56					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		ATATTTTACCAGAAAAGTGCA	0.393000													14	23					0	0	0.000151284	0	0
ZNF828	283489	broad.mit.edu	37	13	115089509	115089509	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr13:115089509C>T	uc010ahb.2	+	3	521	c.192C>T	c.(190-192)TGC>TGT	p.C64C	ZNF828_uc001vuv.2_Silent_p.C64C|ZNF828_uc010tko.1_Silent_p.C64C	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	64					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TATTTCACTGCCATAAATGCT	0.378000													12	25					0	0	0.00010058	0	0
POTEG	404785	broad.mit.edu	37	14	19553561	19553561	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:19553561C>T	uc001vuz.1	+	1	197	c.145C>T	c.(145-147)CAC>TAC	p.H49Y	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	49										ovary(1)	1						TTCTGGAGACCACGACGATTC	0.607000													29	350					0	0	0.000781405	0	0
OR4L1	122742	broad.mit.edu	37	14	20528960	20528960	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:20528960C>T	uc001vwn.1	+	1	757	c.757C>T	c.(757-759)CCT>TCT	p.P253S		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GTTCTTTGGACCTTGTATTTT	0.418000													52	44					0	0	0.000781405	0	0
OR4N5	390437	broad.mit.edu	37	14	20612005	20612005	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:20612005C>T	uc010tla.1	+	1	111	c.111C>T	c.(109-111)ATC>ATT	p.I37I		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCTACCTTATCATCCTCCCTG	0.453000													71	194					0	0	0.000781405	0	0
OR11G2	390439	broad.mit.edu	37	14	20666112	20666112	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:20666112C>T	uc010tlb.1	+	1	618	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	206	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		AAATGTCCTTCTGTGGATCTA	0.438000													39	21					0	0	0.000191422	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21794081	21794081	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:21794081C>T	uc001wag.2	+	16	2459	c.2459C>T	c.(2458-2460)CCC>CTC	p.P820L	RPGRIP1_uc001wah.2_Missense_Mutation_p.P462L|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.P295L|RPGRIP1_uc010aim.2_Missense_Mutation_p.P203L|RPGRIP1_uc001wal.2_Missense_Mutation_p.P179L|RPGRIP1_uc001wam.2_Missense_Mutation_p.P137L	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	820	C2.				response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GGAACTCAACCCAGTCCATAT	0.512000													10	19					0	0	0.000442599	0	0
OR4E2	26686	broad.mit.edu	37	14	22133973	22133973	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:22133973G>A	uc010tmd.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GTTTCTCTTCGAAAACACTCA	0.502000													36	35					0	0	0.000228196	0	0
EAPP	55837	broad.mit.edu	37	14	34985607	34985608	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:34985607_34985608GG>TT	uc001wsd.1	-	6	875_876	c.766_767CC>AA	c.(766-768)CCA>AAA	p.P256K		NM_018453	NP_060923	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	256					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				ovary(1)	1	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		GCACATGACTGGGTGATAGATT	0.455000													8	188					0	0	6.4e-05	0	0
FSCB	84075	broad.mit.edu	37	14	44973773	44973773	+	Silent	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:44973773G>C	uc001wvn.2	-	1	2727	c.2418C>G	c.(2416-2418)CCC>CCG	p.P806P		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	806						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TTTCAAGAGTGGGAGCCTGTC	0.368000													4	105					0	0	0.00024832	0	0
SLC35F4	341880	broad.mit.edu	37	14	58030955	58030955	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:58030955C>T	uc001xdb.1	-	8	1464	c.1464G>A	c.(1462-1464)AAG>AAA	p.K488K	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_Silent_p.K329K	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						TCTTCTTTTCCTTCAGGCTGT	0.522000													11	15					0	0	0.000151284	0	0
KCNH5	27133	broad.mit.edu	37	14	63174288	63174288	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:63174288C>T	uc001xfx.2	-	11	2956	c.2905G>A	c.(2905-2907)GAT>AAT	p.D969N	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	969	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CTAAAAATATCCTGACATGGT	0.348000													73	133					0	0	0.000781405	0	0
SYNE2	23224	broad.mit.edu	37	14	64681167	64681167	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:64681167C>T	uc001xgm.2	+	106	19542	c.19312C>T	c.(19312-19314)CCA>TCA	p.P6438S	SYNE2_uc001xgl.2_Missense_Mutation_p.P6438S|SYNE2_uc010apy.2_Missense_Mutation_p.P2823S|SYNE2_uc001xgn.2_Missense_Mutation_p.P1400S|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.P408S|SYNE2_uc001xgq.2_Missense_Mutation_p.P803S|SYNE2_uc001xgr.2_Missense_Mutation_p.P221S|SYNE2_uc010tsi.1_Missense_Mutation_p.P72S|SYNE2_uc001xgs.2_Missense_Mutation_p.P72S|SYNE2_uc001xgt.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6438	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CGAGGAGGGCCCATACTACAG	0.612000													9	18					0	0	0.000274275	0	0
ESR2	2100	broad.mit.edu	37	14	64735629	64735629	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:64735629C>T	uc001xha.1	-	4	1004	c.536G>A	c.(535-537)GGA>GAA	p.G179E	ESR2_uc001xgu.2_Missense_Mutation_p.G179E|ESR2_uc001xgv.2_Missense_Mutation_p.G179E|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Missense_Mutation_p.G179E|ESR2_uc001xgy.1_Missense_Mutation_p.G179E|ESR2_uc001xgz.1_Missense_Mutation_p.G179E|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Missense_Mutation_p.G179E	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	179	Nuclear receptor.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	ATCATTATGTCCTATAGCAGA	0.418000													28	83					0	0	0.000227799	0	0
ZNF410	57862	broad.mit.edu	37	14	74360502	74360502	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:74360502C>T	uc001xoz.1	+	3	218	c.36C>T	c.(34-36)CTC>CTT	p.L12L	ZNF410_uc001xoy.1_RNA|ZNF410_uc010ary.1_RNA|ZNF410_uc010tuf.1_RNA|ZNF410_uc010tug.1_5'UTR|ZNF410_uc010tuh.1_Silent_p.L12L|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Silent_p.L12L|ZNF410_uc001xpa.1_5'UTR|ZNF410_uc001xpb.1_Silent_p.L12L|ZNF410_uc001xpc.1_5'UTR	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		CCCCCCAGCTCCTGGTACAGT	0.408000													31	37					0	0	0.000279167	0	0
VSX2	338917	broad.mit.edu	37	14	74711882	74711882	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:74711882C>T	uc001xpq.2	+	3	560	c.470C>T	c.(469-471)TCC>TTC	p.S157F		NM_182894	NP_878314	P58304	VSX2_HUMAN	visual system homeobox 2	157	Homeobox.				multicellular organismal development|response to stimulus|visual perception	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00154)		ATCTTTACCTCCTACCAGCTA	0.547000													9	15					0	0	0.000442599	0	0
FLRT2	23768	broad.mit.edu	37	14	86089489	86089489	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:86089489C>T	uc001xvr.2	+	2	2398	c.1631C>T	c.(1630-1632)GCG>GTG	p.A544V	FLRT2_uc010atd.2_Missense_Mutation_p.A544V	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	544	Helical; (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TTTCTGCTGGCGGGCTTGATC	0.597000													32	65					0	0	0.000692331	0	0
AK7	122481	broad.mit.edu	37	14	96944945	96944945	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:96944945G>A	uc001yfn.2	+	15	1743	c.1699G>A	c.(1699-1701)GAT>AAT	p.D567N		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	567					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CAATATCGACGATGAGACTGT	0.478000													20	24					0	0	0.000229342	0	0
SNURF	8926	broad.mit.edu	37	15	25200198	25200198	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:25200198G>A	uc001ywu.2	+	1	129	c.3G>A	c.(1-3)ATG>ATA	p.M1I	SNRPN_uc001ywp.1_Intron|SNRPN_uc001ywq.1_Intron|SNRPN_uc001ywr.1_Intron|SNRPN_uc001yws.1_Intron|SNRPN_uc001ywt.1_Intron|SNRPN_uc001ywv.1_5'UTR|SNRPN_uc001yww.1_5'UTR|SNRPN_uc001ywx.1_5'UTR|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Missense_Mutation_p.M1I	NM_022804	NP_073715	Q9Y675	SNURF_HUMAN	SNRPN upstream reading frame protein	1						nucleus					0		all_cancers(20;1.4e-21)|Breast(32;0.000625)		all cancers(64;3.48e-07)|Epithelial(43;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0142)		GTGACGCGATGGAGCGGGCAA	0.602000													16	31					0	0	0.000566183	0	0
C15orf41	84529	broad.mit.edu	37	15	37100597	37100597	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:37100597C>T	uc001zje.3	+	11	1039	c.789C>T	c.(787-789)ATC>ATT	p.I263I	C15orf41_uc001zjd.2_Silent_p.I263I|C15orf41_uc010bbb.1_Silent_p.I165I|C15orf41_uc001zjf.2_Silent_p.I165I|C15orf41_uc010uci.1_Silent_p.I165I|CSNK1A1P_uc001zjg.3_Intron	NM_001130010	NP_001123482	Q9Y2V0	CO041_HUMAN	hypothetical protein LOC84529 isoform 1	263							protein binding			pancreas(1)	1		all_epithelial(112;3.06e-10)|Lung NSC(122;6.48e-08)|all_lung(180;8.31e-07)|Melanoma(134;0.222)		all cancers(64;1.76e-19)|GBM - Glioblastoma multiforme(113;5.03e-07)|BRCA - Breast invasive adenocarcinoma(123;0.11)		AAAGGGGCATCCTGCTCAAAG	0.478000													14	21					0	0	0.000151284	0	0
THBS1	7057	broad.mit.edu	37	15	39881267	39881267	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:39881267C>T	uc001zkh.2	+	11	1932	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	THBS1_uc010bbi.2_Nonsense_Mutation_p.Q57*	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	585	EGF-like 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	AAATGGCATCCAGTGCACAGA	0.532000													35	67					0	0	0.000319135	0	0
C15orf43	145645	broad.mit.edu	37	15	45258395	45258395	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:45258395G>A	uc001zuk.2	+	5	405	c.388G>A	c.(388-390)GAA>AAA	p.E130K		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	130											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		GACCCTTAGGGAAAACAGTGA	0.294000													8	14					0	0	6.40141e-05	0	0
USP8	9101	broad.mit.edu	37	15	50786354	50786354	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:50786354C>T	uc001zym.3	+	17	3035	c.2535C>T	c.(2533-2535)ATC>ATT	p.I845I	USP8_uc001zyl.3_Silent_p.I845I|USP8_uc001zyn.3_Silent_p.I845I|USP8_uc010ufh.1_Silent_p.I739I|uc001zyo.1_RNA|USP8_uc001zyp.3_Silent_p.I12I	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	845					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		ATAGATATATCAGTCCAAAGG	0.393000													44	67					0	0	0.000509022	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51397368	51397368	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:51397368C>T	uc001zyy.2	-	1	106	c.6G>A	c.(4-6)GGG>GGA	p.G2G		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	2											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GCCGTGGTTTCCCCATTTGGA	0.517000													22	33					0	0	0.000375601	0	0
WDR72	256764	broad.mit.edu	37	15	53908161	53908161	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:53908161C>T	uc002acj.2	-	15	2284	c.2242G>A	c.(2242-2244)GAA>AAA	p.E748K	WDR72_uc010bfi.1_Missense_Mutation_p.E748K	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	748										lung(1)|skin(1)	2				all cancers(107;0.0511)		GCCAGGCTTTCAGTAATAGGC	0.423000													26	35					0	0	0.000586117	0	0
HERC1	8925	broad.mit.edu	37	15	64019986	64019986	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:64019986G>A	uc002amp.2	-	17	3354	c.3206C>T	c.(3205-3207)TCC>TTC	p.S1069F	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	1069					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TAACAGCAGGGAGTTAACAAT	0.463000													29	45					0	0	0.000228196	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72958193	72958193	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:72958193C>T	uc010uks.1	+	16	1808	c.1767C>T	c.(1765-1767)GTC>GTT	p.V589V	uc002aux.1_5'Flank|uc002auy.1_5'Flank	NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	589	Potential.										0						TGGAGGATGTCATCAGGCTGG	0.622000													7	91					0	0	0.000184323	0	0
CTSH	1512	broad.mit.edu	37	15	79231504	79231504	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:79231504T>A	uc002ben.2	-	3	162	c.65A>T	c.(64-66)CAC>CTC	p.H22L	CTSH_uc010unf.1_RNA|CTSH_uc010bll.1_Intron|CTSH_uc010ung.1_Missense_Mutation_p.H34L	NM_148979	NP_683880	P09668	CATH_HUMAN	cathepsin H isoform b precursor	34					protein destabilization|proteolysis	lysosome	cysteine-type endopeptidase activity			central_nervous_system(2)|large_intestine(1)	3						TGACTTGAAGTGAAACTTCTC	0.358000													16	131					0	0	0.000958276	0	0
CRTC3	64784	broad.mit.edu	37	15	91172622	91172622	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:91172622C>T	uc002bpp.2	+	11	1230	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	CRTC3_uc002bpo.2_Missense_Mutation_p.S375F	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	375					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CCATCTCTTTCCACCACAAAC	0.557000			T	MAML2	salivary gland mucoepidermoid								485	163					0	0	0.000781405	0	0
BLM	641	broad.mit.edu	37	15	91303417	91303418	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:91303417_91303418GG>TT	uc002bpr.2	+	6	1225_1226	c.1128_1129GG>TT	c.(1126-1131)ATGGAG>ATTTAG	p.376_377ME>I*	BLM_uc010uqh.1_Nonsense_Mutation_p.376_377ME>I*|BLM_uc010uqi.1_Nonsense_Mutation_p.1_2ME>I*|BLM_uc010bnx.2_Nonsense_Mutation_p.376_377ME>I*|BLM_uc002bps.1_5'Flank	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	376_377					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			TTCATGTGATGGAGCACATCTG	0.312000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				15	835					0	0	6.4e-05	0	0
RCCD1	91433	broad.mit.edu	37	15	91503151	91503152	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:91503151_91503152GG>TT	uc002bqj.2	+	6	981_982	c.701_702GG>TT	c.(700-702)TGG>TTT	p.W234F	RCCD1_uc002bqk.2_Missense_Mutation_p.W234F|RCCD1_uc002bql.2_Missense_Mutation_p.W234F|RCCD1_uc010bob.2_Missense_Mutation_p.W23F	NM_033544	NP_291022	A6NED2	RCCD1_HUMAN	RCC1 domain containing 1	234	RCC1 3.										0	Lung NSC(78;0.0987)|all_lung(78;0.175)		Lung(145;0.189)			ATTTATATCTGGGGCTGGAATG	0.559000													13	656					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91810814	91810815	+	Missense_Mutation	DNP	GG	TT	TT	rs146252262	byFrequency	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:91810814_91810815GG>TT	uc002bqv.2	+	7	1540_1541	c.1149_1150GG>TT	c.(1147-1152)ATGGGG>ATTTGG	p.383_384MG>IW	SV2B_uc002bqt.2_Missense_Mutation_p.383_384MG>IW|SV2B_uc010uqv.1_Missense_Mutation_p.232_233MG>IW|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	383_384	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			ACTGTGTGATGGGGCCCTACAG	0.450000													18	819					0	0	6.4e-05	0	0
MEF2A	4205	broad.mit.edu	37	15	100230539	100230539	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:100230539C>T	uc010urw.1	+	7	1129	c.770C>T	c.(769-771)CCT>CTT	p.P257L	MEF2A_uc010urv.1_Missense_Mutation_p.P187L|MEF2A_uc010bos.2_Missense_Mutation_p.P255L|MEF2A_uc002bvf.2_Missense_Mutation_p.P257L|MEF2A_uc002bve.2_Missense_Mutation_p.P255L|MEF2A_uc002bvg.2_Missense_Mutation_p.P255L|MEF2A_uc002bvi.2_Missense_Mutation_p.P255L|MEF2A_uc010bot.2_Missense_Mutation_p.P187L	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	257					apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			AAGTCTCCCCCTCCACCAGGT	0.478000													12	79					0	0	0.00010058	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100591907	100591907	+	Silent	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:100591907T>C	uc002bvv.1	-	17	2404	c.2325A>G	c.(2323-2325)GGA>GGG	p.G775G		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	775	Spacer.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CATAATGAATTCCATAATCTT	0.463000													48	376					0	0	0.000781405	0	0
CHSY1	22856	broad.mit.edu	37	15	101775692	101775692	+	Silent	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:101775692C>G	uc002bwt.1	-	3	894	c.411G>C	c.(409-411)CGG>CGC	p.R137R		NM_014918	NP_055733	Q86X52	CHSS1_HUMAN	chondroitin sulfate synthase 1	137	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity				0	Lung NSC(78;0.00217)|all_lung(78;0.00271)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGTCCACACCCCGTAGTGGCA	0.473000													4	214					0	0	0.000602214	0	0
OR4F6	390648	broad.mit.edu	37	15	102346042	102346043	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:102346042_102346043GG>TT	uc010utr.1	+	1	120_121	c.120_121GG>TT	c.(118-123)ATGGGA>ATTTGA	p.40_41MG>I*		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	40_41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CAAGCCTGATGGGAAATCTCCT	0.485000													12	500					0	0	6.4e-05	0	0
IFT140	9742	broad.mit.edu	37	16	1573573	1573573	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:1573573G>A	uc002cmb.2	-	26	3761	c.3399C>T	c.(3397-3399)TTC>TTT	p.F1133F	IFT140_uc002clz.2_Silent_p.F746F	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	1133	TPR 7.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGTGCTCGATGAAGAAGTCGG	0.652000													19	15					0	0	0.000375601	0	0
CREBBP	1387	broad.mit.edu	37	16	3827650	3827650	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:3827650G>A	uc002cvv.2	-	11	2326	c.2122C>T	c.(2122-2124)CTG>TTG	p.L708L	CREBBP_uc002cvw.2_Silent_p.L670L	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	708					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GGCAGGGACAGGGGTCCATCT	0.343000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				49	48					0	0	0.000781405	0	0
ZNF500	26048	broad.mit.edu	37	16	4802948	4802949	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:4802948_4802949GG>AA	uc002cxp.1	-	6	1118_1119	c.871_872CC>TT	c.(871-873)CCA>TTA	p.P291L	ZNF500_uc002cxo.1_Missense_Mutation_p.P83L|ZNF500_uc010uxt.1_Missense_Mutation_p.P291L	NM_021646	NP_067678	O60304	ZN500_HUMAN	zinc finger protein 500	291					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						CCTCTGACCTGGGAGCGGGTGG	0.678000													30	23					0	0	6.4e-05	0	0
A2BP1	54715	broad.mit.edu	37	16	7568215	7568215	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:7568215C>T	uc002cys.2	+	5	1082	c.94C>T	c.(94-96)CCC>TCC	p.P32S	A2BP1_uc010buf.1_Missense_Mutation_p.P32S|A2BP1_uc002cyr.1_Missense_Mutation_p.P32S|A2BP1_uc002cyt.2_Missense_Mutation_p.P32S|A2BP1_uc010uxz.1_Missense_Mutation_p.P75S|A2BP1_uc010uya.1_Missense_Mutation_p.P68S|A2BP1_uc002cyv.1_Missense_Mutation_p.P32S|A2BP1_uc010uyb.1_Missense_Mutation_p.P32S|A2BP1_uc002cyw.2_Missense_Mutation_p.P52S|A2BP1_uc002cyy.2_Missense_Mutation_p.P52S|A2BP1_uc002cyx.2_Missense_Mutation_p.P52S|A2BP1_uc010uyc.1_Missense_Mutation_p.P52S	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	32					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCAGTTTGCTCCCCCGCAGAA	0.587000													34	69					0	0	0.00058488	0	0
GRIN2A	2903	broad.mit.edu	37	16	9923482	9923482	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:9923482C>T	uc002czo.3	-	9	2353	c.1805G>A	c.(1804-1806)GGA>GAA	p.G602E	GRIN2A_uc010uym.1_Missense_Mutation_p.G602E|GRIN2A_uc010uyn.1_Missense_Mutation_p.G445E|GRIN2A_uc002czr.3_Missense_Mutation_p.G602E	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	602	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TATAGCTTTTCCAATTGTAAA	0.463000													24	68					0	0	0.000878237	0	0
RRN3	54700	broad.mit.edu	37	16	15180278	15180278	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:15180278G>A	uc002dde.2	-	4	354	c.286C>T	c.(286-288)CGT>TGT	p.R96C	PDXDC1_uc002ddc.2_Intron|RRN3_uc010uzp.1_5'UTR|RRN3_uc010uzq.1_Intron|RRN3_uc002ddf.1_Missense_Mutation_p.R96C	NM_018427	NP_060897	Q9NYV6	RRN3_HUMAN	RRN3 RNA polymerase I transcription factor	96					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm				ovary(1)	1						ATAGAAGAACGGAATTCTAGC	0.313000													61	169					0	0	0.000781405	0	0
XYLT1	64131	broad.mit.edu	37	16	17211628	17211628	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:17211628G>T	uc002dfa.2	-	11	2517	c.2432C>A	c.(2431-2433)CCT>CAT	p.P811H		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	811	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CAAGTTCAAAGGGGGCTTGTA	0.552000													42	29					1.0096e-33	1.06684e-32	0.000781405	1	0
SMG1	23049	broad.mit.edu	37	16	18823123	18823124	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:18823123_18823124CG>AT	uc002dfm.2	-	62	11230_11231	c.10867_10868CG>AT	c.(10867-10869)CGA>ATA	p.R3623I	SMG1_uc010bwb.2_Missense_Mutation_p.R3483I|SMG1_uc010bwa.2_Missense_Mutation_p.R2354I	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3623					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						ATCAACATCTCGGCCCTCTAAC	0.446000													11	467					0	0	6.4e-05	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926460	22926460	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:22926460C>T	uc002dli.2	+	2	753	c.681C>T	c.(679-681)ACC>ACT	p.T227T	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	227	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		ACATCCCGACCTTTGAGGGCC	0.612000													62	39					0	0	0.000781405	0	0
RBBP6	5930	broad.mit.edu	37	16	24578597	24578597	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:24578597C>T	uc002dmh.2	+	15	2763	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	RBBP6_uc010vcb.1_Missense_Mutation_p.P442S|RBBP6_uc002dmi.2_Missense_Mutation_p.P575S|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P442S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	575					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		acttcctctccctccgggtgt	0.308000													34	84					0	0	0.000692331	0	0
MYLK3	91807	broad.mit.edu	37	16	46766146	46766146	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:46766146C>T	uc002eei.3	-	4	1552	c.1436G>A	c.(1435-1437)GGC>GAC	p.G479D	MYLK3_uc010vge.1_Missense_Mutation_p.G138D|MYLK3_uc002eej.1_Missense_Mutation_p.G138D	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	479					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				AGCCTCGGCGCCTGGGGGCAT	0.657000													10	2					0	0	0.000673444	0	0
SNTB2	6645	broad.mit.edu	37	16	69304074	69304074	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:69304074G>C	uc002ewu.2	+	4	1054	c.1034G>C	c.(1033-1035)TGG>TCG	p.W345S		NM_006750	NP_006741	Q13425	SNTB2_HUMAN	basic beta 2 syntrophin	345	PH 2.					cell junction|dystrophin-associated glycoprotein complex|membrane fraction|microtubule|transport vesicle membrane	actin binding|calmodulin binding|protein binding				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.208)		AGACAGCAATGGAGACCTGTC	0.458000													4	70					0	0	0.00024832	0	0
CLEC3A	10143	broad.mit.edu	37	16	78062066	78062066	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:78062066G>A	uc002ffh.3	+	2	259	c.178G>A	c.(178-180)GAA>AAA	p.E60K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	60					skeletal system development	extracellular region	sugar binding				0						TGCCTTGAAGGAAATTCAAGC	0.473000													5	33					0	0	8.12818e-05	0	0
KCNG4	93107	broad.mit.edu	37	16	84270534	84270534	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr16:84270534C>T	uc010voc.1	-	2	679	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q	KCNG4_uc002fhu.1_Silent_p.Q186Q	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	186						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TCTCCCTCTGCTGCCTCAGTA	0.692000													14	7					0	0	0.000219431	0	0
MYO1C	4641	broad.mit.edu	37	17	1381191	1381191	+	Silent	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:1381191C>A	uc002fsp.2	-	13	1696	c.1476G>T	c.(1474-1476)TCG>TCT	p.S492S	MYO1C_uc002fsn.2_Silent_p.S473S|MYO1C_uc002fso.2_Silent_p.S457S|MYO1C_uc010vqj.1_Silent_p.S457S|MYO1C_uc010vqk.1_Silent_p.S468S	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	492	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCACCAAAATCGAGATGATGC	0.572000													25	82					1.80694e-10	1.90008e-09	0.000279167	1	0
RAP1GAP2	23108	broad.mit.edu	37	17	2911408	2911408	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:2911408G>A	uc010ckd.2	+	17	1553	c.1463G>A	c.(1462-1464)GGA>GAA	p.G488E	RAP1GAP2_uc010cke.2_Missense_Mutation_p.G473E	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	488					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TTTGAGAATGGAGGCCACGGG	0.587000													33	38					0	0	0.000953801	0	0
SPNS3	201305	broad.mit.edu	37	17	4349427	4349427	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:4349427G>C	uc002fxt.2	+	4	531	c.487G>C	c.(487-489)GAC>CAC	p.D163H	SPNS3_uc002fxu.2_Missense_Mutation_p.D36H	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	163	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CGTCCTGGGCGACCTCTTCGT	0.627000													25	24					0	0	0.000586117	0	0
USP6	9098	broad.mit.edu	37	17	5045313	5045313	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:5045313G>A	uc002gau.1	+	24	3819	c.1589G>A	c.(1588-1590)GGA>GAA	p.G530E	USP6_uc002gav.1_Missense_Mutation_p.G530E|USP6_uc010ckz.1_Missense_Mutation_p.G213E	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	530					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						ACAGAAAAGGGAGCCACAGGT	0.413000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								26	105					0	0	0.000491102	0	0
NLRP1	22861	broad.mit.edu	37	17	5462258	5462258	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:5462258G>A	uc002gci.2	-	4	2313	c.1758C>T	c.(1756-1758)TTC>TTT	p.F586F	NLRP1_uc002gcg.1_Silent_p.F586F|NLRP1_uc002gck.2_Silent_p.F586F|NLRP1_uc002gcj.2_Silent_p.F586F|NLRP1_uc002gcl.2_Silent_p.F586F|NLRP1_uc002gch.3_Silent_p.F586F|NLRP1_uc010clh.2_Silent_p.F586F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	586	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CATCTGGACTGAAAAGGGTCT	0.532000													18	40					0	0	0.00074312	0	0
ODF4	146852	broad.mit.edu	37	17	8243741	8243741	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:8243741C>T	uc002gle.1	+	1	554	c.372C>T	c.(370-372)ATC>ATT	p.I124I		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	124					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						GCAACAGAATCCACACATCAG	0.537000													22	25					0	0	0.00047179	0	0
MYH4	4622	broad.mit.edu	37	17	10359187	10359187	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:10359187C>T	uc002gmn.2	-	18	2111	c.2000G>A	c.(1999-2001)AGG>AAG	p.R667K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	667	Myosin head-like.|Actin-binding (By similarity).				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTGAGTGCTCCTCAAGTTGGT	0.418000													44	76					0	0	0.000781405	0	0
MYH1	4619	broad.mit.edu	37	17	10415239	10415239	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:10415239G>A	uc002gmo.2	-	14	1427	c.1333C>T	c.(1333-1335)CGC>TGC	p.R445C	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	445	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGTTGATGCGGGTGACCATC	0.463000													78	92					0	0	0.000781405	0	0
DNAH9	1770	broad.mit.edu	37	17	11659888	11659888	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:11659888C>T	uc002gne.2	+	34	6810	c.6742C>T	c.(6742-6744)CTG>TTG	p.L2248L	DNAH9_uc010coo.2_Silent_p.L1542L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2248	AAA 2 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCTCCAGGTGCTGACATTGGC	0.542000													60	64					0	0	0.000781405	0	0
UBB	7314	broad.mit.edu	37	17	16285560	16285560	+	Silent	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:16285560T>C	uc002gpx.2	+	2	477	c.339T>C	c.(337-339)CCT>CCC	p.P113P	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	113	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AAGGCATCCCTCCCGACCAGC	0.557000													5	67					0	0	8.12818e-05	0	0
PRPSAP2	5636	broad.mit.edu	37	17	18814463	18814463	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:18814463A>T	uc002gup.1	+	9	843	c.632A>T	c.(631-633)CAT>CTT	p.H211L	PRPSAP2_uc002guo.1_Missense_Mutation_p.H125L|PRPSAP2_uc010vyi.1_Missense_Mutation_p.H159L|PRPSAP2_uc010vyj.1_Missense_Mutation_p.H125L|PRPSAP2_uc010vyk.1_Missense_Mutation_p.H199L	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	211					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						GCAGTGATTCATGGAGAGGCG	0.587000													21	36					0	0	0.00047179	0	0
NOS2	4843	broad.mit.edu	37	17	26092669	26092669	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:26092669C>T	uc002gzu.2	-	20	2584	c.2320G>A	c.(2320-2322)GGG>AGG	p.G774R		NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	774	FAD (By similarity).|FAD-binding FR-type.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GGGCAAACCCCAAGGTGCTCC	0.642000													13	27					0	0	0.000219431	0	0
TBC1D29	26083	broad.mit.edu	37	17	28889909	28889909	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:28889909G>A	uc002hfh.2	+	4	350	c.201G>A	c.(199-201)AAG>AAA	p.K67K	TBC1D29_uc002hfi.2_Intron|uc002hfj.1_5'Flank	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29	67						intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				AAACTAACAAGGAAACATGGG	0.403000													11	30					0	0	0.000219431	0	0
NF1	4763	broad.mit.edu	37	17	29576111	29576111	+	Nonsense_Mutation	SNP	C	T	T	rs137854560		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:29576111C>T	uc002hgg.2	+	30	4417	c.4084C>T	c.(4084-4086)CGA>TGA	p.R1362*	NF1_uc002hgh.2_Nonsense_Mutation_p.R1362*|NF1_uc010csn.1_Nonsense_Mutation_p.R1222*|NF1_uc002hgi.1_Nonsense_Mutation_p.R395*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1362	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.R1362*(4)|p.R1362fs*18(2)|p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCCTCAACTTCGAAGTGTGTG	0.403000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			44	77					0	0	0.000781405	0	0
MED1	5469	broad.mit.edu	37	17	37563927	37563927	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:37563927C>G	uc002hrv.3	-	17	4759	c.4547G>C	c.(4546-4548)CGG>CCG	p.R1516P	MED1_uc010wee.1_Missense_Mutation_p.R1344P|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1516	Lys-rich.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		gtctttgtcccggtctcggtc	0.323000										HNSCC(31;0.082)			3	64					0	0	6.4e-05	0	0
KRT37	8688	broad.mit.edu	37	17	39580551	39580551	+	Silent	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:39580551A>G	uc002hwp.1	-	1	272	c.225T>C	c.(223-225)ACT>ACC	p.T75T	uc002hwo.1_RNA	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	75	Head.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				AGGGACAAGCAGTGTGACTGG	0.612000													19	32					0	0	0.000958276	0	0
AOC3	8639	broad.mit.edu	37	17	41003774	41003774	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:41003774G>A	uc002ibv.2	+	1	574	c.414G>A	c.(412-414)GTG>GTA	p.V138V		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	138	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	AGCCCAACGTGAGTGAGCTGG	0.682000													8	11					0	0	0.000442599	0	0
G6PC	2538	broad.mit.edu	37	17	41061382	41061382	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:41061382G>A	uc002icb.1	+	4	588	c.509G>A	c.(508-510)CGA>CAA	p.R170Q	G6PC_uc010whf.1_Silent_p.T146T	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	170	Lumenal (Potential).	Substrate (Potential).	R -> Q (in GSD1A; loss of catalytic activity).		gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		TGTCTGTCACGAATCTACCTT	0.502000									Glycogen_Storage_Disease_type_Ia				84	136					0	0	0.000781405	0	0
BRCA1	672	broad.mit.edu	37	17	41244594	41244594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:41244594G>A	uc002icq.2	-	10	3186	c.2954C>T	c.(2953-2955)CCC>CTC	p.P985L	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.P914L|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.P938L|BRCA1_uc002ict.2_Missense_Mutation_p.P985L|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.P985L|BRCA1_uc002ide.1_Missense_Mutation_p.P816L|BRCA1_uc010cyy.1_Missense_Mutation_p.P985L|BRCA1_uc010whs.1_Missense_Mutation_p.P985L|BRCA1_uc010cyz.2_Missense_Mutation_p.P938L|BRCA1_uc010cza.2_Missense_Mutation_p.P959L|BRCA1_uc010wht.1_Missense_Mutation_p.P689L	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	985					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TGACTTGATGGGAAAAAGTGG	0.353000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			31	64					0	0	0.000279167	0	0
SLC4A1	6521	broad.mit.edu	37	17	42327841	42327841	+	Silent	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:42327841C>G	uc002igf.3	-	20	2870	c.2721G>C	c.(2719-2721)GTG>GTC	p.V907V		NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	907	Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CAGGCATGGCCACTTCGTCGT	0.587000													6	32					0	0	0.000157383	0	0
DBF4B	80174	broad.mit.edu	37	17	42824500	42824500	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:42824500C>T	uc002ihf.2	+	11	1093	c.880C>T	c.(880-882)CCC>TCC	p.P294S	DBF4B_uc002ihe.2_Missense_Mutation_p.P108S|DBF4B_uc010wjc.1_Missense_Mutation_p.P278S	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	294	DBF4-type.				cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				CCACACCATGCCCAGGAGGAA	0.607000													22	51					0	0	0.000227799	0	0
KIAA1267	284058	broad.mit.edu	37	17	44110807	44110807	+	Nonsense_Mutation	SNP	G	A	A	rs143533965		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:44110807G>A	uc002ikb.2	-	11	2771	c.2686C>T	c.(2686-2688)CAG>TAG	p.Q896*	KIAA1267_uc002ikc.2_Nonsense_Mutation_p.Q896*|KIAA1267_uc002ikd.2_Nonsense_Mutation_p.Q896*|KIAA1267_uc010dav.2_Nonsense_Mutation_p.Q895*|KIAA1267_uc010wkb.1_Nonsense_Mutation_p.Q227*|KIAA1267_uc010wkc.1_Nonsense_Mutation_p.Q164*	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	896						MLL1 complex	protein binding	p.Q896*(1)		skin(2)	2		Melanoma(429;0.211)				TTCAGAGACTGAAGATCAACC	0.483000													8	15					0	0	0.000442599	0	0
WNT9B	7484	broad.mit.edu	37	17	44952677	44952677	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:44952677G>A	uc002ikw.1	+	3	582	c.545G>A	c.(544-546)GGA>GAA	p.G182E	WNT9B_uc002ikx.1_Missense_Mutation_p.G182E	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	182					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			TCCAAGAGAGGAAACAAGGAC	0.637000													6	21					0	0	0.000157383	0	0
CDC27	996	broad.mit.edu	37	17	45199825	45199825	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:45199825G>A	uc002ild.3	-	18	2504	c.2377C>T	c.(2377-2379)CAA>TAA	p.Q793*	CDC27_uc002ile.3_Nonsense_Mutation_p.Q799*|CDC27_uc002ilf.3_Nonsense_Mutation_p.Q792*|CDC27_uc010wkp.1_Nonsense_Mutation_p.Q732*|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	793					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TGTTCTTCTTGGGTTATTGGC	0.338000													36	88					0	0	0.000374591	0	0
MSX2P1	55545	broad.mit.edu	37	17	56234965	56234965	+	RNA	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:56234965G>A	uc002ivn.2	+	1		c.646G>A				NR_002307				Homo sapiens msh homeobox 2 pseudogene 1 (MSX2P1), non-coding RNA.												0						AAGACTGCAGGAGTCAGAACT	0.542000													6	19					0	0	3.59834e-05	0	0
ABCA6	23460	broad.mit.edu	37	17	67080471	67080471	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:67080471C>T	uc002jhw.1	-	34	4461	c.4286G>A	c.(4285-4287)GGA>GAA	p.G1429E		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1429	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					AGGTGAGTTTCCCAGGAGGCT	0.527000													29	41					0	0	0.000184323	0	0
SDK2	54549	broad.mit.edu	37	17	71431685	71431685	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:71431685T>A	uc010dfm.2	-	9	1099	c.1099A>T	c.(1099-1101)ATC>TTC	p.I367F	SDK2_uc010dfn.2_Missense_Mutation_p.I46F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	367	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						AGGCCGCTGATCTGCAGGCCC	0.642000													4	4					0	0	0.00024832	0	0
KIF19	124602	broad.mit.edu	37	17	72351328	72351328	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:72351328G>A	uc002jkm.3	+	20	3012	c.2874G>A	c.(2872-2874)GGG>GGA	p.G958G		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	958					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CAGGCCCGGGGGACTCCTCAC	0.657000													11	28					0	0	0.00010058	0	0
UBE2O	63893	broad.mit.edu	37	17	74398146	74398146	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:74398146G>A	uc002jrm.3	-	5	814	c.749C>T	c.(748-750)TCG>TTG	p.S250L	UBE2O_uc002jrn.3_Missense_Mutation_p.S250L|UBE2O_uc002jrl.3_5'Flank	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	250							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						GCACACTACCGAGTCGCTGAC	0.547000													8	27					0	0	0.000442599	0	0
DNAH17	8632	broad.mit.edu	37	17	76503677	76503677	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:76503677C>T	uc010wtu.1	-	2	499	c.322G>A	c.(322-324)GAC>AAC	p.D108N						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			ATGACGGAGTCCGCCGTGGAC	0.602000													5	9					0	0	0.000602214	0	0
FASN	2194	broad.mit.edu	37	17	80041110	80041110	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:80041110G>A	uc002kdu.2	-	32	5650	c.5533C>T	c.(5533-5535)CAA>TAA	p.Q1845*	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1845	Enoyl reductase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TGCTTCCCTTGGGCCATGTAG	0.687000													21	53					0	0	0.000720815	0	0
CCDC57	284001	broad.mit.edu	37	17	80153206	80153206	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr17:80153206T>C	uc002kdz.1	-	5	906	c.551A>G	c.(550-552)AAG>AGG	p.K184R	CCDC57_uc002kdx.1_Missense_Mutation_p.K184R	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	184	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			GTGCTCCCTCTTCCGCATTTT	0.532000													8	3					0	0	0.000673444	0	0
CETN1	1068	broad.mit.edu	37	18	580810	580810	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:580810G>A	uc002kko.1	+	1	444	c.402G>A	c.(400-402)GGG>GGA	p.G134G		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	134	EF-hand 3.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACGAGCTGGGGGAGAACCTCA	0.537000													23	35					0	0	0.00047179	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6301907	6301907	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:6301907C>T	uc002kmz.3	-	4	282	c.122G>A	c.(121-123)AGT>AAT	p.S41N	L3MBTL4_uc010dkt.2_Missense_Mutation_p.S41N	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	41					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				ATTACCGTGACTCAAAGGGGT	0.338000													52	89					0	0	0.000781405	0	0
CEP76	79959	broad.mit.edu	37	18	12699099	12699099	+	Silent	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:12699099A>G	uc002kri.2	-	4	555	c.399T>C	c.(397-399)TGT>TGC	p.C133C	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_5'UTR|CEP76_uc010wzz.1_Intron|CEP76_uc010xaa.1_5'UTR|CEP76_uc010xab.1_3'UTR	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	133					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						TAAACGTTGAACAAACTTGTC	0.393000													35	53					0	0	0.000409698	0	0
LAMA3	3909	broad.mit.edu	37	18	21512189	21512189	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:21512189C>T	uc002kuq.2	+	66	8728	c.8642C>T	c.(8641-8643)TCC>TTC	p.S2881F	LAMA3_uc002kur.2_Missense_Mutation_p.S2825F|LAMA3_uc002kus.3_Missense_Mutation_p.S1272F|LAMA3_uc002kut.3_Missense_Mutation_p.S1216F	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2881	Laminin G-like 3.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATTTCAAGTTCCCGGCAGTCT	0.458000													50	78					0	0	0.000781405	0	0
DSG1	1828	broad.mit.edu	37	18	28935265	28935265	+	Nonsense_Mutation	SNP	C	T	T	rs144199555		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:28935265C>T	uc002kwp.2	+	15	3318	c.3106C>T	c.(3106-3108)CGA>TGA	p.R1036*	DSG1_uc010xbp.1_Nonsense_Mutation_p.R395*	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	1036	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TAGCACAGCTCGAAGTCGAAT	0.498000													16	34					0	0	0.000175454	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093567	30093567	+	RNA	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:30093567C>G	uc010dmc.2	+	1		c.1942C>G				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GATTTGTGCCCAGTGCATTGA	0.488000													4	125					0	0	0.00024832	0	0
KLHL14	57565	broad.mit.edu	37	18	30260501	30260501	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:30260501C>T	uc002kxm.1	-	6	1688	c.1300G>A	c.(1300-1302)GAA>AAA	p.E434K	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	434	Kelch 3.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						TAGCCAGTTTCATTCCTTCCA	0.478000													21	22					0	0	0.000132079	0	0
C18orf34	374864	broad.mit.edu	37	18	30873194	30873194	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:30873194C>T	uc002kxn.2	-	11	1247	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	C18orf34_uc010xbr.1_Missense_Mutation_p.E369K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E369K|C18orf34_uc002kxp.2_Missense_Mutation_p.E369K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	369	Potential.									ovary(1)	1						ACTTCCTCTTCCTTCTCCTCA	0.294000													28	43					0	0	0.000878237	0	0
ASXL3	80816	broad.mit.edu	37	18	31318469	31318469	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:31318469G>A	uc010dmg.1	+	11	1156	c.1101G>A	c.(1099-1101)GAG>GAA	p.E367E	ASXL3_uc002kxq.2_Silent_p.E74E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	367					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGTCAAGAGAGGAATCTGTGA	0.433000													8	17					0	0	0.000274275	0	0
ASXL3	80816	broad.mit.edu	37	18	31324164	31324164	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:31324164G>A	uc010dmg.1	+	12	4407	c.4352G>A	c.(4351-4353)GGA>GAA	p.G1451E	ASXL3_uc002kxq.2_Missense_Mutation_p.G1158E	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1451					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GATAATTCTGGAAAACCTCAG	0.478000											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	79					0	0	0.000781405	0	0
ASXL3	80816	broad.mit.edu	37	18	31325550	31325550	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:31325550T>C	uc010dmg.1	+	12	5793	c.5738T>C	c.(5737-5739)GTT>GCT	p.V1913A	ASXL3_uc002kxq.2_Missense_Mutation_p.V1620A	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1913					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CTATTTCATGTTGACAAGAAT	0.527000													34	59					0	0	0.000953801	0	0
NOL4	8715	broad.mit.edu	37	18	31599311	31599311	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:31599311C>T	uc010dmi.2	-	6	1256	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	NOL4_uc010xbs.1_Missense_Mutation_p.E58K|NOL4_uc002kxr.3_Missense_Mutation_p.E179K|NOL4_uc010xbt.1_Missense_Mutation_p.E269K|NOL4_uc010dmh.2_Missense_Mutation_p.E269K|NOL4_uc010xbu.1_Missense_Mutation_p.E343K|NOL4_uc002kxt.3_Missense_Mutation_p.E343K|NOL4_uc010xbv.1_Missense_Mutation_p.E92K|NOL4_uc010xbw.1_Missense_Mutation_p.E229K	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	343						nucleolus	RNA binding			ovary(3)	3						GCCTCTCGTTCCATCTTGAGG	0.378000													15	40					0	0	0.000566183	0	0
SETBP1	26040	broad.mit.edu	37	18	42533069	42533069	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:42533069C>T	uc010dni.2	+	4	4060	c.3764C>T	c.(3763-3765)CCT>CTT	p.P1255L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1255						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGCAGTGAGCCTGTGGACTCA	0.517000									Schinzel-Giedion_syndrome				18	21					0	0	0.000229342	0	0
ALPK2	115701	broad.mit.edu	37	18	56204273	56204273	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:56204273G>A	uc002lhj.3	-	5	3360	c.3146C>T	c.(3145-3147)TCC>TTC	p.S1049F	ALPK2_uc002lhk.1_Missense_Mutation_p.S380F	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1049							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AGGAAATTGGGAAACCTTTTC	0.493000													15	42					0	0	0.000566183	0	0
GRP	2922	broad.mit.edu	37	18	56892886	56892886	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr18:56892886C>T	uc002lhv.2	+	2	400	c.302C>T	c.(301-303)CCC>CTC	p.P101L	GRP_uc002lhu.2_Missense_Mutation_p.P101L|GRP_uc002lhw.2_Missense_Mutation_p.P101L	NM_002091	NP_002082	P07492	GRP_HUMAN	gastrin-releasing peptide isoform 1	101					neuropeptide signaling pathway	extracellular space	neuropeptide hormone activity				0		Colorectal(73;0.0946)				CCACCTCAACCCAAGGCCCTG	0.483000													34	68					0	0	0.000953801	0	0
MATK	4145	broad.mit.edu	37	19	3779419	3779420	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:3779419_3779420CC>TT	uc002lyt.2	-	11	1357_1358	c.957_958GG>AA	c.(955-960)CGGGGT>CGAAGT	p.G320S	MATK_uc002lyv.2_Missense_Mutation_p.G321S|MATK_uc002lyu.2_Missense_Mutation_p.G279S|MATK_uc010dtq.2_Missense_Mutation_p.G320S	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	320	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGGCTCGACCCCGGGTCCGCA	0.673000													10	18					0	0	6.4e-05	0	0
ZNF358	140467	broad.mit.edu	37	19	7585296	7585296	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:7585296C>T	uc002mgn.2	+	2	1338	c.1168C>T	c.(1168-1170)CTC>TTC	p.L390F	MCOLN1_uc010dvh.1_5'Flank|MCOLN1_uc002mgo.2_5'Flank|MCOLN1_uc002mgp.2_5'Flank	NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	390	C2H2-type 9.				embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						GGCCTCCAGCCTCACCAAGCA	0.507000													7	17					0	0	8.12818e-05	0	0
RETN	56729	broad.mit.edu	37	19	7734321	7734321	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:7734321G>A	uc002mhf.1	+	2	155	c.109G>A	c.(109-111)GGC>AGC	p.G37S	RETN_uc002mhg.1_Missense_Mutation_p.G37S|RETN_uc010dvm.1_RNA	NM_020415	NP_065148	Q9HD89	RETN_HUMAN	resistin	37							hormone activity			ovary(1)	1						GGAGGTCGCCGGCTCCCTAAG	0.522000													10	73					0	0	0.000442599	0	0
CD209	30835	broad.mit.edu	37	19	7810766	7810766	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:7810766C>T	uc002mht.2	-	4	453	c.386G>A	c.(385-387)CGG>CAG	p.R129Q	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Missense_Mutation_p.R105Q|CD209_uc002mhr.2_Missense_Mutation_p.R105Q|CD209_uc002mhs.2_Missense_Mutation_p.R105Q|CD209_uc002mhu.2_Missense_Mutation_p.R129Q|CD209_uc010dvq.2_Missense_Mutation_p.R129Q|CD209_uc002mhq.2_Missense_Mutation_p.R129Q|CD209_uc002mhv.2_Missense_Mutation_p.R105Q|CD209_uc002mhx.2_Missense_Mutation_p.R85Q|CD209_uc002mhw.2_Missense_Mutation_p.R85Q|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	129	Extracellular (Probable).|2.|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						AGCCTTCAGCCGGGTCAGCTC	0.567000													5	119					0	0	0.000602214	0	0
MUC16	94025	broad.mit.edu	37	19	9050137	9050137	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:9050137G>A	uc002mkp.2	-	5	31698	c.31494C>T	c.(31492-31494)GTC>GTT	p.V10498V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10500	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGGAGTATAGACACTGGTGG	0.502000													122	134					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	9062601	9062601	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:9062601G>A	uc002mkp.2	-	3	25049	c.24845C>T	c.(24844-24846)TCC>TTC	p.S8282F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8284	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAATGTAGAGGAAACAGGAGA	0.512000													24	20					0	0	0.00047179	0	0
MUC16	94025	broad.mit.edu	37	19	9069570	9069570	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:9069570G>A	uc002mkp.2	-	3	18080	c.17876C>T	c.(17875-17877)TCC>TTC	p.S5959F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5961	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTGAGAAGGGAAGTCACAGG	0.498000													19	21					0	0	0.00074312	0	0
MUC16	94025	broad.mit.edu	37	19	9070578	9070578	+	Missense_Mutation	SNP	G	A	A	rs141378906	by1000genomes	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:9070578G>A	uc002mkp.2	-	3	17072	c.16868C>T	c.(16867-16869)CCC>CTC	p.P5623L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5625	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCACAGGGGGAGTTGTCAT	0.537000													8	9					0	0	0.000157383	0	0
MUC16	94025	broad.mit.edu	37	19	9085435	9085435	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:9085435G>A	uc002mkp.2	-	1	6584	c.6380C>T	c.(6379-6381)TCG>TTG	p.S2127L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2127	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACCTGTGACCGAGGATGCATC	0.493000													34	57					0	0	0.00058488	0	0
MAST1	22983	broad.mit.edu	37	19	12976868	12976868	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:12976868G>A	uc002mvm.2	+	17	2109	c.1981G>A	c.(1981-1983)GAG>AAG	p.E661K		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	661	AGC-kinase C-terminal.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GCAGAAGGCCGAGTTCATCCC	0.592000													14	17					0	0	0.000422831	0	0
OR7C2	26658	broad.mit.edu	37	19	15053093	15053093	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:15053093C>T	uc010xoc.1	+	1	793	c.793C>T	c.(793-795)CCA>TCA	p.P265S		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					TGCAGTTACACCACCTTCTAG	0.542000													24	42					0	0	0.000878237	0	0
OR10H2	26538	broad.mit.edu	37	19	15839501	15839501	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:15839501C>T	uc002nbm.2	+	1	668	c.648C>T	c.(646-648)CTC>CTT	p.L216L		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					TCCTCATCCTCCTCTCCTATG	0.532000													34	47					0	0	0.000319135	0	0
UNC13A	23025	broad.mit.edu	37	19	17752324	17752324	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:17752324G>A	uc002nhd.2	-	21	2778	c.2778C>T	c.(2776-2778)GTC>GTT	p.V926V		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	838					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GGATCTTCACGACCCCATTGT	0.577000													16	25					0	0	0.000958276	0	0
MAST3	23031	broad.mit.edu	37	19	18232516	18232516	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:18232516G>C	uc002nhz.3	+	3	93	c.93G>C	c.(91-93)AAG>AAC	p.K31N		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	31							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						GGAACCGCAAGAGCTTGGTGG	0.677000													15	35					0	0	0.000566183	0	0
KLHL26	55295	broad.mit.edu	37	19	18778511	18778511	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:18778511G>A	uc002njz.1	+	3	331	c.304G>A	c.(304-306)GAC>AAC	p.D102N		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	102	BTB.									ovary(1)	1						GGCAAGCCAGGACGTCATCGA	0.642000													29	34					0	0	0.00058488	0	0
Unknown	0	broad.mit.edu	37	19	23159633	23159633	+	RNA	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:23159633C>T	uc002nqy.1	-	3		c.517G>A			uc002nqz.1_Missense_Mutation_p.G105E					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		AAGTTTCTTTCCAGTATGCCT	0.294000													7	25					0	0	8.12818e-05	0	0
CD22	933	broad.mit.edu	37	19	35827142	35827142	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:35827142T>C	uc010edt.2	+	4	693	c.616T>C	c.(616-618)TTC>CTC	p.F206L	CD22_uc010xst.1_Missense_Mutation_p.F34L|CD22_uc010edu.2_Missense_Mutation_p.F206L|CD22_uc010edv.2_Missense_Mutation_p.F206L|CD22_uc002nzb.3_Missense_Mutation_p.F206L|CD22_uc010edx.2_5'Flank	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	206	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	CGAGCTCAAGTTCTCCCCACA	0.557000													12	23					0	0	6.40141e-05	0	0
PSG7	5676	broad.mit.edu	37	19	43429958	43429958	+	Missense_Mutation	SNP	C	T	T	rs151272638		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:43429958C>T	uc002ovl.3	-	6	1312	c.1210G>A	c.(1210-1212)GAA>AAA	p.E404K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Missense_Mutation_p.E317K|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Missense_Mutation_p.E130K|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.E317K|PSG7_uc010xwl.1_Missense_Mutation_p.E282K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	404	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TTGGAGCTTTCCTTGCCAGTG	0.468000													81	94					0	0	0.000781405	0	0
TOMM40	10452	broad.mit.edu	37	19	45406291	45406291	+	Silent	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:45406291T>C	uc002ozx.3	+	10	1052	c.951T>C	c.(949-951)TCT>TCC	p.S317S	TOMM40_uc002ozy.3_Silent_p.S317S|TOMM40_uc002paa.3_Silent_p.S317S|TOMM40_uc002ozz.2_3'UTR|APOE_uc002pab.2_5'Flank	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	317					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		CTGCAGGCTCTGTGGATAGCA	0.592000													23	45					0	0	0.000586117	0	0
CARD8	22900	broad.mit.edu	37	19	48733815	48733815	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:48733815G>A	uc002pie.3	-	6	910	c.597C>T	c.(595-597)ATC>ATT	p.I199I	CARD8_uc002pii.3_Silent_p.I305I|CARD8_uc010xzi.1_Silent_p.I200I|CARD8_uc010els.2_Silent_p.I238I|CARD8_uc010xzj.1_Silent_p.I305I|CARD8_uc010xzk.1_Silent_p.I224I|CARD8_uc002pif.3_Silent_p.I199I|CARD8_uc002pig.3_Silent_p.I30I|CARD8_uc002pih.3_Silent_p.I255I|CARD8_uc010xzl.1_Silent_p.I255I|CARD8_uc010xzm.1_Silent_p.I305I	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	199					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		TCCCACTGGCGATCCGCAGCA	0.547000													18	23					0	0	0.000566183	0	0
SYNGR4	23546	broad.mit.edu	37	19	48879392	48879392	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:48879392C>T	uc002piz.2	+	5	767	c.522C>T	c.(520-522)GTC>GTT	p.V174V		NM_012451	NP_036583	O95473	SNG4_HUMAN	synaptogyrin 4	174						integral to membrane					0		all_epithelial(76;5.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|Prostate(7;0.0143)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		ATGCTCCAGTCCCTTACAAGC	0.597000													27	34					0	0	0.000692331	0	0
TRPM4	54795	broad.mit.edu	37	19	49685891	49685891	+	Silent	SNP	C	T	T	rs145772095		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:49685891C>T	uc002pmw.2	+	11	1392	c.1320C>T	c.(1318-1320)TTC>TTT	p.F440F	TRPM4_uc010emu.2_Silent_p.F440F|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Silent_p.F266F|TRPM4_uc010emv.2_Silent_p.F325F|TRPM4_uc010yal.1_Silent_p.F86F|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	440	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGCCTGAGTTCGTGCGCTTGC	0.607000													8	21					0	0	0.000673444	0	0
MYH14	79784	broad.mit.edu	37	19	50784919	50784919	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:50784919C>T	uc002prr.1	+	31	4283	c.4236C>T	c.(4234-4236)CGC>CGT	p.R1412R	MYH14_uc010enu.1_Silent_p.R1453R|MYH14_uc002prq.1_Silent_p.R1420R|MYH14_uc010ycb.1_Intron	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1412	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		AGGCACGGCGCCGGGCAGCCC	0.731000													7	11					0	0	8.12818e-05	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130495	52130495	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:52130495G>A	uc002pxe.2	-	7	1428	c.1289C>T	c.(1288-1290)TCG>TTG	p.S430L		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	430	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CCCGAGGTTCGATCTCCCTGC	0.557000													9	31					0	0	0.000442599	0	0
FPR2	2358	broad.mit.edu	37	19	52272426	52272426	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:52272426G>A	uc002pxr.2	+	2	560	c.515G>A	c.(514-516)GGG>GAG	p.G172E	FPR2_uc002pxs.3_Missense_Mutation_p.G172E|FPR2_uc010epf.2_Missense_Mutation_p.G172E	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	172	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						ATTCCAAATGGGGACACATAC	0.502000													34	52					0	0	0.00058488	0	0
ZNF816A	125893	broad.mit.edu	37	19	53454821	53454821	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:53454821G>A	uc002qal.1	-	5	508	c.207C>T	c.(205-207)TCC>TCT	p.S69S	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.S53S	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	69	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		ACTCCATCATGGATTTTAAAG	0.338000													28	56					0	0	0.000409698	0	0
NLRP12	91662	broad.mit.edu	37	19	54312959	54312959	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:54312959A>G	uc002qch.3	-	3	2174	c.1954T>C	c.(1954-1956)TTC>CTC	p.F652L	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.F652L|NLRP12_uc002qcj.3_Missense_Mutation_p.F652L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.F652L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	652					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TTCAGACAGAACGAGGAGACC	0.622000													11	24					0	0	0.000308642	0	0
LILRA3	11026	broad.mit.edu	37	19	54803128	54803128	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:54803128G>A	uc002qfd.2	-	4	614	c.549C>T	c.(547-549)TCC>TCT	p.S183S	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	183	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CGGGGCCCACGGAGAAGATGG	0.572000													23	36					0	0	0.000720815	0	0
NLRP4	147945	broad.mit.edu	37	19	56369766	56369766	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:56369766C>T	uc002qmd.3	+	3	1429	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	NLRP4_uc002qmf.2_Missense_Mutation_p.S261F|NLRP4_uc010etf.2_Missense_Mutation_p.S167F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	336	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CAGCTGTTTTCCATATGCCAA	0.473000													27	44					0	0	0.000409698	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701378	56701378	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:56701378C>T	uc010ygh.1	-	4	1306	c.1306G>A	c.(1306-1308)GAG>AAG	p.E436K		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	436					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						AACGGCCTCTCCCCGGTGTGG	0.562000													16	25					0	0	0.00074312	0	0
PEG3	5178	broad.mit.edu	37	19	57328348	57328348	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:57328348G>A	uc002qnu.2	-	7	1813	c.1462C>T	c.(1462-1464)CAC>TAC	p.H488Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H459Y|PEG3_uc002qnv.2_Missense_Mutation_p.H488Y|PEG3_uc002qnw.2_Missense_Mutation_p.H364Y|PEG3_uc002qnx.2_Missense_Mutation_p.H362Y|PEG3_uc010etr.2_Missense_Mutation_p.H488Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	488					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GCCACACTGTGGATAAAGGAC	0.463000													53	79					0	0	0.000781405	0	0
ZNF446	55663	broad.mit.edu	37	19	58988593	58988593	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:58988593C>T	uc002qsz.2	+	2	125	c.8C>T	c.(7-9)TCC>TTC	p.S3F	ZNF446_uc002qta.2_Missense_Mutation_p.S3F|ZNF446_uc010eur.2_Missense_Mutation_p.S3F	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	3					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		AGAATGCCATCCCCTCTGGGT	0.602000													49	82					0	0	0.000781405	0	0
TPO	7173	broad.mit.edu	37	2	1480882	1480882	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:1480882G>A	uc002qww.2	+	8	935	c.844G>A	c.(844-846)GCG>ACG	p.A282T	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.A282T|TPO_uc002qwr.2_Missense_Mutation_p.A282T|TPO_uc002qwx.2_Missense_Mutation_p.A282T|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Missense_Mutation_p.A282T	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	282	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCGGCCGGCCGCGGGCACCGC	0.701000													9	15					0	0	0.000673444	0	0
MYT1L	23040	broad.mit.edu	37	2	1926121	1926121	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:1926121G>A	uc002qxe.2	-	10	2247	c.1420C>T	c.(1420-1422)CCC>TCC	p.P474S	MYT1L_uc002qxd.2_Missense_Mutation_p.P474S|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	474					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCCTCCCCGGGAAGTTGTCTC	0.473000													36	59					0	0	0.000953801	0	0
RSAD2	91543	broad.mit.edu	37	2	7030343	7030344	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:7030343_7030344GG>AT	uc002qyp.1	+	4	911_912	c.775_776GG>AT	c.(775-777)GGA>ATA	p.G259I		NM_080657	NP_542388	Q8WXG1	RSAD2_HUMAN	radical S-adenosyl methionine domain containing	259					defense response to virus	endoplasmic reticulum membrane|Golgi apparatus	catalytic activity|iron-sulfur cluster binding|metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			OV - Ovarian serous cystadenocarcinoma(76;0.191)		TGAGAATTGTGGAGAAGATGCT	0.441000													21	44					0	0	6.4e-05	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698568	17698568	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:17698568T>C	uc002rcl.1	-	1	1139	c.1115A>G	c.(1114-1116)AAT>AGT	p.N372S	RAD51AP2_uc010exn.1_Missense_Mutation_p.N363S	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	372										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCAATTTGCATTTTCTAGTAT	0.373000													21	36					0	0	0.000229342	0	0
XDH	7498	broad.mit.edu	37	2	31595155	31595155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:31595155G>A	uc002rnv.1	-	17	1874	c.1795C>T	c.(1795-1797)CGC>TGC	p.R599C		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	599					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTCTCGTAGCGAGGAATGTCG	0.637000													52	83					0	0	0.000781405	0	0
LTBP1	4052	broad.mit.edu	37	2	33412139	33412139	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:33412139G>A	uc002ros.2	+	6	1418	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	LTBP1_uc002rot.2_Missense_Mutation_p.G147E|LTBP1_uc002rou.2_Missense_Mutation_p.G147E|LTBP1_uc002rov.2_Missense_Mutation_p.G147E|LTBP1_uc010ymz.1_Missense_Mutation_p.G147E|LTBP1_uc010yna.1_Missense_Mutation_p.G147E	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	473					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AGCCAGCAAGGAGTCAAAGGT	0.522000													11	30					0	0	0.000673444	0	0
NRXN1	9378	broad.mit.edu	37	2	50724509	50724509	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:50724509C>T	uc010fbq.2	-	14	4438	c.2961G>A	c.(2959-2961)GGG>GGA	p.G987G	NRXN1_uc002rxb.3_Silent_p.G619G|NRXN1_uc002rxe.3_Silent_p.G947G|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CATTTCCATCCCCACTGTTAT	0.363000													26	46					0	0	0.000184323	0	0
TET3	200424	broad.mit.edu	37	2	74274397	74274397	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:74274397C>T	uc002skb.3	+	1	948	c.948C>T	c.(946-948)CCC>CCT	p.P316P	TET3_uc010fez.1_Silent_p.P316P	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	316							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCTCCTGGCCCATGCCTCGCC	0.617000													11	17					0	0	0.000151284	0	0
Unknown	0	broad.mit.edu	37	2	89160256	89160256	+	RNA	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:89160256G>A	uc010ytr.1	-	239		c.9534C>T			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		TCCTTAAGATGAACTAATTTT	0.388000													4	4					0	0	0.00024832	0	0
TBC1D8	11138	broad.mit.edu	37	2	101644812	101644812	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:101644812G>A	uc010fiv.2	-	13	2391	c.2260C>T	c.(2260-2262)CCC>TCC	p.P754S	TBC1D8_uc002tau.3_Missense_Mutation_p.P511S	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	754					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						ACAGGGTAGGGCTCCTGGTCG	0.592000													17	14					0	0	0.00074312	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107450538	107450538	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:107450538C>T	uc002tdq.2	-	3	1127	c.1008G>A	c.(1006-1008)GGG>GGA	p.G336G	ST6GAL2_uc002tdr.2_Silent_p.G336G|ST6GAL2_uc002tds.3_Silent_p.G336G	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	336	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TGGTTTTATTCCCAACATCTT	0.383000													48	97					0	0	0.000781405	0	0
MERTK	10461	broad.mit.edu	37	2	112777075	112777075	+	Missense_Mutation	SNP	G	A	A	rs147779020	by1000genomes	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:112777075G>A	uc002thk.1	+	16	2287	c.2165G>A	c.(2164-2166)CGA>CAA	p.R722Q	MERTK_uc002thl.1_Missense_Mutation_p.R546Q	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	722	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TTTCTTCATCGAGATTTAGCT	0.463000													22	41					0	0	0.000229342	0	0
GLI2	2736	broad.mit.edu	37	2	121746901	121746901	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:121746901G>A	uc010flp.2	+	13	3441	c.3411G>A	c.(3409-3411)CTG>CTA	p.L1137L	GLI2_uc002tmq.1_Silent_p.L809L|GLI2_uc002tmr.1_Silent_p.L792L|GLI2_uc002tmt.3_Silent_p.L809L|GLI2_uc002tmu.3_Silent_p.L792L	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1137					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCTCCAGCCTGAACAAAAATA	0.637000													12	17					0	0	0.000151284	0	0
POTEF	728378	broad.mit.edu	37	2	130832395	130832395	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:130832395C>T	uc010fmh.2	-	17	3050	c.2650G>A	c.(2650-2652)GAA>AAA	p.E884K		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	884	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TCAGGCAGTTCCCGCCCAGCC	0.592000													17	6					0	0	0.000422831	0	0
THSD7B	80731	broad.mit.edu	37	2	137928435	137928435	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:137928435G>A	uc002tva.1	+	6	1557	c.1557G>A	c.(1555-1557)GGG>GGA	p.G519G	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.G409G	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CATCAGAAGGGATCTGTTTCC	0.537000													22	19					0	0	0.000175454	0	0
THSD7B	80731	broad.mit.edu	37	2	138414689	138414689	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:138414689G>A	uc002tva.1	+	23	4247	c.4247G>A	c.(4246-4248)CGA>CAA	p.R1416Q	THSD7B_uc010zbj.1_RNA	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AATAACGAACGAACTGTATGG	0.413000													36	49					0	0	0.000270559	0	0
LRP1B	53353	broad.mit.edu	37	2	141607715	141607715	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:141607715C>T	uc002tvj.1	-	29	5867	c.4895G>A	c.(4894-4896)CGA>CAA	p.R1632Q	LRP1B_uc010fnl.1_Missense_Mutation_p.R814Q	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1632	Extracellular (Potential).|LDL-receptor class B 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATAAAAGCTCGTTTAATGGT	0.333000										TSP Lung(27;0.18)			34	59					0	0	0.000228196	0	0
LRP1B	53353	broad.mit.edu	37	2	141625375	141625375	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:141625375C>T	uc002tvj.1	-	27	5335	c.4363G>A	c.(4363-4365)GAT>AAT	p.D1455N	LRP1B_uc010fnl.1_Missense_Mutation_p.D637N	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1455	Extracellular (Potential).|LDL-receptor class B 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTGTTCCATCATAGAGGGCT	0.393000										TSP Lung(27;0.18)			27	39					0	0	0.000184323	0	0
NEB	4703	broad.mit.edu	37	2	152515633	152515633	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:152515633C>A	uc010fnx.2	-	47	6212	c.6021G>T	c.(6019-6021)ATG>ATT	p.M2007I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2007	Nebulin 53.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGATATCAGGCATGATGTGGA	0.378000													71	140					9.11151e-29	9.61242e-28	0.000781405	1	0
SCN1A	6323	broad.mit.edu	37	2	166848500	166848500	+	Missense_Mutation	SNP	C	T	T	rs121917950		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:166848500C>T	uc010zcz.1	-	26	5270	c.5252G>A	c.(5251-5253)GGA>GAA	p.G1751E		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1762	IV.|Helical; Name=S6 of repeat IV; (By similarity).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AAAGAAAATTCCAACAGATGG	0.448000													40	65					0	0	0.000228196	0	0
SCN1A	6323	broad.mit.edu	37	2	166900412	166900412	+	Missense_Mutation	SNP	G	A	A	rs148371904		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:166900412G>A	uc010zcz.1	-	11	1828	c.1810C>T	c.(1810-1812)CGT>TGT	p.R604C	SCN1A_uc002udo.3_Missense_Mutation_p.R473C|SCN1A_uc010fpk.2_Missense_Mutation_p.R473C	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	604						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GAATCTCTACGGCTCTCGTTA	0.532000													23	26					0	0	0.000229342	0	0
HOXD4	3233	broad.mit.edu	37	2	177017509	177017509	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:177017509C>T	uc002uks.2	+	2	856	c.607C>T	c.(607-609)CAG>TAG	p.Q203*		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	203	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		GATCTGGTTCCAGAACCGGAG	0.493000													20	26					0	0	0.000229342	0	0
TTN	7273	broad.mit.edu	37	2	179427302	179427302	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:179427302C>T	uc010zfg.1	-	275	76077	c.75853G>A	c.(75853-75855)GAA>AAA	p.E25285K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E18980K|TTN_uc010zfi.1_Missense_Mutation_p.E18913K|TTN_uc010zfj.1_Missense_Mutation_p.E18788K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26212							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGTTGTTTCAGCTGGCAAA	0.418000													30	37					0	0	0.000953801	0	0
TTN	7273	broad.mit.edu	37	2	179542585	179542585	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:179542585G>A	uc010zfg.1	-	143	30546	c.30322C>T	c.(30322-30324)CTA>TTA	p.L10108L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L6769L|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11035							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTCAAATAGAACTTCCTCT	0.398000													51	71					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179546404	179546404	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:179546404C>T	uc010zfg.1	-	133	29648	c.29424G>A	c.(29422-29424)AAG>AAA	p.K9808K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.K6469K|TTN_uc010fre.1_Silent_p.K655K|TTN_uc002una.1_5'Flank|TTN_uc010frf.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10735							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCGGTGGGGCCTTTGGTTTTG	0.388000													55	73					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179589021	179589021	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:179589021C>T	uc010zfg.1	-	69	17573	c.17349G>A	c.(17347-17349)GGG>GGA	p.G5783G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G2444G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6710							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCTGCTTTTCCCAACATTAT	0.383000													16	26					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179612727	179612727	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:179612727C>T	uc002unb.2	-	46	14624	c.14400G>A	c.(14398-14400)GGG>GGA	p.G4800G	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTCCTGTGTCCCACCATCCT	0.483000													15	29					0	0	0.000308642	0	0
CALCRL	10203	broad.mit.edu	37	2	188211048	188211048	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:188211048G>A	uc002upv.3	-	15	1797	c.1249C>T	c.(1249-1251)CGT>TGT	p.R417C	CALCRL_uc010frt.2_Missense_Mutation_p.R417C	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	417	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GACGCACTACGAAGAGCTTCT	0.378000													19	31					0	0	0.00074312	0	0
SLC40A1	30061	broad.mit.edu	37	2	190439931	190439931	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:190439931C>T	uc002uqp.3	-	3	578	c.227G>A	c.(226-228)GGA>GAA	p.G76E	SLC40A1_uc002uqq.2_Missense_Mutation_p.G76E	NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	76	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GATGATGGCTCCCAGGACCAG	0.493000													61	85					0	0	0.000781405	0	0
STAT4	6775	broad.mit.edu	37	2	191927508	191927508	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:191927508C>T	uc002usm.1	-	9	1175	c.921G>A	c.(919-921)TTG>TTA	p.L307L	STAT4_uc002usn.1_Silent_p.L307L|STAT4_uc010zgk.1_Silent_p.L152L|STAT4_uc002uso.2_Silent_p.L307L	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	307					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GGTTGTAGATCAAGAAGGTGA	0.408000													16	29					0	0	0.000308642	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398000			Mis		gliobastoma 								16	42					0	0	0.000566183	0	0
FN1	2335	broad.mit.edu	37	2	216262425	216262425	+	Silent	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:216262425T>C	uc002vfa.2	-	22	3761	c.3495A>G	c.(3493-3495)CCA>CCG	p.P1165P	FN1_uc002vfb.2_Silent_p.P1165P|FN1_uc002vfc.2_Silent_p.P1165P|FN1_uc002vfd.2_Silent_p.P1165P|FN1_uc002vfe.2_Silent_p.P1165P|FN1_uc002vff.2_Silent_p.P1165P|FN1_uc002vfg.2_Silent_p.P1165P|FN1_uc002vfh.2_Silent_p.P1165P|FN1_uc002vfi.2_Silent_p.P1165P|FN1_uc002vfj.2_Silent_p.P1165P	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	1165	|Fibronectin type-III 6.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGTTTACAATTGGCGCATCTC	0.403000													32	58					0	0	0.000953801	0	0
DOCK10	55619	broad.mit.edu	37	2	225657702	225657702	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:225657702G>A	uc010fwz.1	-	47	5539	c.5300C>T	c.(5299-5301)CCC>CTC	p.P1767L	DOCK10_uc002vob.2_Missense_Mutation_p.P1761L|DOCK10_uc002voa.2_Missense_Mutation_p.P423L|DOCK10_uc002voc.2_Intron	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1767	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TCCTCCACTGGGAGTTGTTAG	0.438000													68	72					0	0	0.000781405	0	0
GPR55	9290	broad.mit.edu	37	2	231775270	231775270	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:231775270C>T	uc002vrg.2	-	2	601	c.408G>A	c.(406-408)AGG>AGA	p.R136R	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Silent_p.R136R	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	136	Cytoplasmic (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		CAAAGATCTTCCTGGGGGACC	0.542000													13	26					0	0	0.00010058	0	0
INPP5D	3635	broad.mit.edu	37	2	234085942	234085942	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:234085942G>A	uc010zmo.1	+	17	2174	c.2021G>A	c.(2020-2022)CGA>CAA	p.R674Q	INPP5D_uc010zmp.1_Missense_Mutation_p.R673Q	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	674					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TGGTGTGACCGAGTCCTCTGG	0.418000													31	66					0	0	0.000228196	0	0
ASB18	401036	broad.mit.edu	37	2	237149963	237149963	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:237149963C>T	uc010znh.1	-	2	288	c.288G>A	c.(286-288)ATG>ATA	p.M96I	ASB18_uc010fyp.1_Missense_Mutation_p.M67I	NM_212556	NP_997721	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box-containing 18	96					intracellular signal transduction					ovary(1)	1		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		CCTGCCATTCCATCTCATCCT	0.488000													24	56					0	0	0.000586117	0	0
THAP4	51078	broad.mit.edu	37	2	242573101	242573101	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr2:242573101C>T	uc002wbt.2	-	2	694	c.471G>A	c.(469-471)GCG>GCA	p.A157A		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	157							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CCTCCTGGGCCGCCCTGGGTG	0.642000													15	27					0	0	0.000422831	0	0
SIRPB1	10326	broad.mit.edu	37	20	1552513	1552513	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:1552513C>T	uc010gai.2	-	3	703	c.604G>A	c.(604-606)GAC>AAC	p.D202N	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	202	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GACACACTGTCTCCTGCGGGG	0.557000													21	36					0	0	0.000147802	0	0
ZNF343	79175	broad.mit.edu	37	20	2463916	2463916	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:2463916A>T	uc002wge.1	-	6	2179	c.1691T>A	c.(1690-1692)CTC>CAC	p.L564H	ZNF343_uc010gao.1_Missense_Mutation_p.L564H|ZNF343_uc002wgd.1_Missense_Mutation_p.L474H	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	564	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.L564F(1)		upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTGGACAAGGAGGAGTGATTT	0.507000													16	24					0	0	0.000566183	0	0
HSPA12B	116835	broad.mit.edu	37	20	3728911	3728911	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:3728911G>A	uc002wjd.2	+	8	826	c.723G>A	c.(721-723)CTG>CTA	p.L241L	HSPA12B_uc010zqi.1_Silent_p.L240L|HSPA12B_uc002wje.2_Silent_p.L154L|HSPA12B_uc010zqj.1_Silent_p.L75L	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	241							ATP binding				0						TCATCGCCCTGGAGCCCGAGG	0.677000													16	36					0	0	0.000958276	0	0
SNAP25	6616	broad.mit.edu	37	20	10279981	10279981	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:10279981G>A	uc002wnq.1	+	7	685	c.473G>A	c.(472-474)GGG>GAG	p.G158E	SNAP25_uc002wnr.1_Missense_Mutation_p.G158E|SNAP25_uc002wns.1_Missense_Mutation_p.G95E|SNAP25_uc010gca.1_Missense_Mutation_p.G158E|SNAP25_uc010gcb.1_Missense_Mutation_p.G95E|SNAP25_uc010gcc.1_Missense_Mutation_p.G52E	NM_130811	NP_570824	P60880	SNP25_HUMAN	synaptosomal-associated protein 25 isoform	158	t-SNARE coiled-coil homology 2.				energy reserve metabolic process|glutamate secretion|neurotransmitter uptake|synaptic vesicle docking involved in exocytosis	cell junction|growth cone|perinuclear region of cytoplasm|synapse|synaptosome				skin(2)	2					Botulinum Toxin Type A(DB00083)	GGCATCATCGGGAACCTCCGT	0.502000													36	36					0	0	0.00058488	0	0
MACROD2	140733	broad.mit.edu	37	20	15412056	15412056	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:15412056C>T	uc002wou.2	+	7	811	c.547C>T	c.(547-549)CCC>TCC	p.P183S	MACROD2_uc002wot.2_Missense_Mutation_p.P183S|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	183	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				ACAGGCATTTCCCTGCATCTC	0.308000													60	85					0	0	0.000781405	0	0
RRBP1	6238	broad.mit.edu	37	20	17601011	17601011	+	Missense_Mutation	SNP	C	G	G	rs147451912		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:17601011C>G	uc002wpv.1	-	19	2567	c.2213G>C	c.(2212-2214)CGG>CCG	p.R738P	RRBP1_uc010zrp.1_5'Flank|RRBP1_uc002wpt.1_Missense_Mutation_p.R108P|RRBP1_uc002wpu.2_Missense_Mutation_p.R512P|RRBP1_uc002wpw.1_Missense_Mutation_p.R738P|RRBP1_uc010gcl.1_Missense_Mutation_p.R512P|RRBP1_uc010gcm.1_3'UTR	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	1171	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						CACTGTGACCCGGGACTACAA	0.537000													3	56					0	0	6.4e-05	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060251	35060251	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:35060251C>T	uc002xff.2	+	3	566	c.131C>T	c.(130-132)GCC>GTC	p.A44V	DLGAP4_uc010zvp.1_Missense_Mutation_p.A44V	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	44					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GCCCGCGAGGCCCGCTTCCCC	0.677000													12	16					0	0	0.000151284	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060258	35060258	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:35060258C>T	uc002xff.2	+	3	573	c.138C>T	c.(136-138)TTC>TTT	p.F46F	DLGAP4_uc010zvp.1_Silent_p.F46F	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	46					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				AGGCCCGCTTCCCCGGGCAGA	0.677000													13	15					0	0	0.00010058	0	0
MATN4	8785	broad.mit.edu	37	20	43927082	43927082	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:43927082C>T	uc002xnn.2	-	7	1341	c.1154G>A	c.(1153-1155)GGG>GAG	p.G385E	MATN4_uc002xno.2_Missense_Mutation_p.G344E|MATN4_uc002xnp.2_Missense_Mutation_p.G303E|MATN4_uc010zwr.1_Missense_Mutation_p.G333E|MATN4_uc002xnr.1_Missense_Mutation_p.G385E	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	426	VWFA 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				CTGCACCAGCCCCACCCGCGT	0.637000													15	20					0	0	0.000308642	0	0
MMP9	4318	broad.mit.edu	37	20	44641983	44641983	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:44641983A>C	uc002xqz.2	+	9	1439	c.1420A>C	c.(1420-1422)ACT>CCT	p.T474P		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	474					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CGGACCCCCCACTGTCCACCC	0.448000											OREG0025990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	27					0	0	0.000422831	0	0
SLC13A3	64849	broad.mit.edu	37	20	45192189	45192189	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:45192189G>A	uc002xsf.1	-	12	1534	c.1496C>T	c.(1495-1497)GCC>GTC	p.A499V	SLC13A3_uc010ghn.1_Missense_Mutation_p.A468V|SLC13A3_uc010zxw.1_Missense_Mutation_p.A449V|SLC13A3_uc002xsg.1_Missense_Mutation_p.A452V|SLC13A3_uc010gho.1_Missense_Mutation_p.A417V|SLC13A3_uc010zxx.1_Missense_Mutation_p.A401V|SLC13A3_uc002xse.1_5'UTR|SLC13A3_uc010ghm.1_Missense_Mutation_p.A86V|SLC13A3_uc010zxv.1_Missense_Mutation_p.A84V	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	499	Extracellular (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	CAGGCGGATGGCCTGGGCCAG	0.498000													6	11					0	0	0.000157383	0	0
EYA2	2139	broad.mit.edu	37	20	45702966	45702966	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:45702966C>T	uc002xsm.2	+	7	1027	c.653C>T	c.(652-654)TCA>TTA	p.S218L	EYA2_uc010ghp.2_Missense_Mutation_p.S218L|EYA2_uc002xsn.2_Missense_Mutation_p.S223L|EYA2_uc002xso.2_Missense_Mutation_p.S218L|EYA2_uc002xsp.2_Missense_Mutation_p.S218L|EYA2_uc002xsq.2_Missense_Mutation_p.S218L	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	218					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				AGTTCCGAGTCACTTGCTGGT	0.592000													22	50					0	0	0.000720815	0	0
ZMYND8	23613	broad.mit.edu	37	20	45867749	45867749	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:45867749G>A	uc002xta.1	-	15	2612	c.2358C>T	c.(2356-2358)ACC>ACT	p.T786T	ZMYND8_uc010ghq.1_Silent_p.T463T|ZMYND8_uc010ghr.1_Silent_p.T761T|ZMYND8_uc002xst.1_Silent_p.T714T|ZMYND8_uc002xsu.1_Intron|ZMYND8_uc002xsv.1_Silent_p.T714T|ZMYND8_uc002xsw.1_Silent_p.T538T|ZMYND8_uc002xsx.1_Silent_p.T538T|ZMYND8_uc002xsy.1_Silent_p.T761T|ZMYND8_uc002xsz.1_Silent_p.T723T|ZMYND8_uc010zxy.1_Silent_p.T813T|ZMYND8_uc002xtb.1_Silent_p.T806T|ZMYND8_uc002xss.2_Silent_p.T786T|ZMYND8_uc010zxz.1_Intron|ZMYND8_uc002xtc.1_Silent_p.T806T|ZMYND8_uc002xtd.1_Silent_p.T781T|ZMYND8_uc002xte.1_Silent_p.T786T|ZMYND8_uc010zya.1_Silent_p.T786T|ZMYND8_uc002xtf.1_Silent_p.T806T|ZMYND8_uc002xtg.2_Silent_p.T780T|ZMYND8_uc010ghs.1_Silent_p.T780T|ZMYND8_uc002xsr.1_5'UTR	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	786							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			GGGCCGTGACGGTGACCGTGG	0.687000													53	57					0	0	0.000781405	0	0
MOCS3	27304	broad.mit.edu	37	20	49576008	49576008	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:49576008G>A	uc002xvy.1	+	1	646	c.629G>A	c.(628-630)GGC>GAC	p.G210D	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	210					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			skin(2)|ovary(1)	3						CGCTTCGAGGGCCAAATCACA	0.622000													19	24					0	0	0.000132079	0	0
SALL4	57167	broad.mit.edu	37	20	50407595	50407595	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:50407595G>A	uc002xwh.3	-	2	1528	c.1427C>T	c.(1426-1428)CCT>CTT	p.P476L	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	476					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TACAAGGACAGGTTTGCTGTC	0.557000													35	41					0	0	0.000692331	0	0
C20orf85	128602	broad.mit.edu	37	20	56728607	56728607	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:56728607C>G	uc002xyv.2	+	2	114	c.76C>G	c.(76-78)CGT>GGT	p.R26G		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	26										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			CAGGAAATACCGTCTGAAGGC	0.483000													28	59					0	0	0.000953801	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421760	62421760	+	Silent	SNP	G	A	A	rs150383808		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr20:62421760G>A	uc002ygv.1	-	2	552	c.351C>T	c.(349-351)ATC>ATT	p.I117I	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					AGGCTTGCACGATGTCCGTCA	0.597000													15	12					0	0	0.000422831	0	0
TPTE	7179	broad.mit.edu	37	21	10906987	10906987	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:10906987C>T	uc002yip.1	-	24	1942	c.1574G>A	c.(1573-1575)AGA>AAA	p.R525K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R507K|TPTE_uc002yir.1_Missense_Mutation_p.R487K|TPTE_uc010gkv.1_Missense_Mutation_p.R387K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	525	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGATAAATTCTCCGTGCTTT	0.358000													8	65					0	0	0.000157383	0	0
TPTE	7179	broad.mit.edu	37	21	10920116	10920116	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:10920116C>T	uc002yip.1	-	19	1506	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E362K|TPTE_uc002yir.1_Missense_Mutation_p.E342K|TPTE_uc010gkv.1_Missense_Mutation_p.E242K	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	380	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGAAATTTTTCGCTGTGGGTT	0.393000													15	90					0	0	0.000308642	0	0
SAMSN1	64092	broad.mit.edu	37	21	15870823	15870823	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:15870823C>T	uc002yju.1	-	7	941	c.859G>A	c.(859-861)GAA>AAA	p.E287K	SAMSN1_uc010gky.1_Missense_Mutation_p.E119K|SAMSN1_uc002yjv.1_Missense_Mutation_p.E355K	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	287	SAM.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TCTGGGTTTTCAATATTTAAT	0.363000													19	37					0	0	0.000958276	0	0
PLAC4	191585	broad.mit.edu	37	21	42551467	42551468	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:42551467_42551468GG>AA	uc002yyz.2	-	1	5699_5700	c.88_89CC>TT	c.(88-90)CCC>TTC	p.P30F	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	30											0		Prostate(19;2.29e-06)				GAGGAGTGAGGGTGTCAGGGTG	0.569000													5	22					0	0	6.4e-05	0	0
TFF2	7032	broad.mit.edu	37	21	43767708	43767708	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:43767708C>T	uc002zaw.2	-	3	405	c.263G>A	c.(262-264)CGA>CAA	p.R88Q		NM_005423	NP_005414	Q03403	TFF2_HUMAN	trefoil factor 2 precursor	88	P-type 2.				digestion	extracellular region				pancreas(1)	1						ACAGTTTCTTCGGTCTGAGAC	0.602000													15	26					0	0	0.000422831	0	0
TRPM2	7226	broad.mit.edu	37	21	45860701	45860701	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr21:45860701G>A	uc002zet.1	+	32	4512	c.4299G>A	c.(4297-4299)AGG>AGA	p.R1433R	TRPM2_uc002zeu.1_Silent_p.R1433R|TRPM2_uc002zew.1_Silent_p.R1433R|TRPM2_uc010gpt.1_Silent_p.R1483R|TRPM2_uc002zex.1_Silent_p.R1219R|TRPM2_uc002zey.1_Silent_p.R912R|TRPM2_uc011aff.1_Silent_p.R114R	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1433	Nudix hydrolase.|Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATGACCCGAGGAACACGGACA	0.627000													27	43					0	0	0.000227799	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073287	17073287	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:17073287C>T	uc002zlp.1	-	1	414	c.154G>A	c.(154-156)GGC>AGC	p.G52S		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	52					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CCGTGGGGGCCATAGCAAGGC	0.647000													14	32					0	0	0.00074312	0	0
CECR2	27443	broad.mit.edu	37	22	18020395	18020395	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:18020395C>T	uc010gqw.1	+	13	1850	c.1724C>T	c.(1723-1725)CCC>CTC	p.P575L	CECR2_uc010gqv.1_Missense_Mutation_p.P434L|CECR2_uc002zml.2_Missense_Mutation_p.P434L	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	617					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		TCCACACAGCCCCCGCGGGAG	0.602000													9	20					0	0	0.000442599	0	0
MED15	51586	broad.mit.edu	37	22	20929492	20929492	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:20929492C>T	uc002zsp.2	+	9	1325	c.1245C>T	c.(1243-1245)ATC>ATT	p.I415I	MED15_uc002zsq.2_Intron|MED15_uc010gso.2_Intron|MED15_uc002zsr.2_Intron|MED15_uc011ahs.1_Intron|MED15_uc002zss.2_Intron|MED15_uc011ahu.1_Silent_p.I141I|MED15_uc002zst.2_Silent_p.I31I	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	415	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			CAAGCTCCATCCCTTTGGGCA	0.632000													16	19					0	0	0.000566183	0	0
CCDC134	79879	broad.mit.edu	37	22	42206280	42206280	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:42206280G>C	uc003bbh.1	+	4	404	c.295G>C	c.(295-297)GAG>CAG	p.E99Q	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CCDC134_uc011apg.1_Intron	NM_024821	NP_079097	Q9H6E4	CC134_HUMAN	coiled-coil domain containing 134 precursor	99						extracellular region				ovary(2)	2						CCCCCAGGACGAGAAGCTGAA	0.612000													3	23					0	0	6.4e-05	0	0
TCF20	6942	broad.mit.edu	37	22	42606603	42606603	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:42606603G>A	uc003bcj.1	-	1	4843	c.4709C>T	c.(4708-4710)TCT>TTT	p.S1570F	TCF20_uc003bck.1_Missense_Mutation_p.S1570F|TCF20_uc003bnt.2_Missense_Mutation_p.S1570F	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1570					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TCCATCTGCAGAACCTTCTGG	0.542000													40	62					0	0	0.000270559	0	0
A4GALT	53947	broad.mit.edu	37	22	43089715	43089715	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:43089715G>A	uc003bdb.2	-	3	504	c.243C>T	c.(241-243)TTC>TTT	p.F81F	A4GALT_uc010gzd.2_Silent_p.F81F	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	81	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						AAGTCTCCAGGAAGAAGATGT	0.612000													16	25					0	0	0.000566183	0	0
ZBED4	9889	broad.mit.edu	37	22	50277355	50277355	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr22:50277355C>T	uc003bix.2	+	2	515	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	15						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		ACGGTGATTTCGTTTCTGATA	0.383000													25	15					0	0	0.00047179	0	0
CHL1	10752	broad.mit.edu	37	3	407668	407668	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:407668C>T	uc003bou.2	+	14	1844	c.1573C>T	c.(1573-1575)CGT>TGT	p.R525C	CHL1_uc003bot.2_Missense_Mutation_p.R541C|CHL1_uc003bow.1_Missense_Mutation_p.R525C|CHL1_uc011asi.1_Missense_Mutation_p.R541C|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	525	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TAAGAATCCTCGTATCCCCAA	0.353000													18	20					0	0	0.000958276	0	0
CNTN4	152330	broad.mit.edu	37	3	3067938	3067938	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:3067938G>A	uc003bpc.2	+	14	1860	c.1639G>A	c.(1639-1641)GAC>AAC	p.D547N	CNTN4_uc003bpb.1_Missense_Mutation_p.D219N|CNTN4_uc003bpd.1_Missense_Mutation_p.D547N|CNTN4_uc003bpe.2_Missense_Mutation_p.D219N|CNTN4_uc003bpf.2_Missense_Mutation_p.D219N	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	547	Ig-like C2-type 6.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CAGAGATGGGGACCACTTTGA	0.368000													19	29					0	0	0.000229342	0	0
C3orf24	115795	broad.mit.edu	37	3	10146202	10146202	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:10146202C>T	uc003buz.2	-	2	482	c.257G>A	c.(256-258)GGA>GAA	p.G86E	C3orf24_uc003bva.1_Missense_Mutation_p.G86E	NM_173472	NP_775743	Q96PS1	CC024_HUMAN	hypothetical protein LOC115795	86											0				OV - Ovarian serous cystadenocarcinoma(96;0.196)		CCTGACCAGTCCTTTGTTGTT	0.537000													17	35					0	0	0.000958276	0	0
SCN10A	6336	broad.mit.edu	37	3	38783863	38783863	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:38783863G>A	uc003ciq.2	-	13	2025	c.2025C>T	c.(2023-2025)ATC>ATT	p.I675I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	675	Helical; Name=S1 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGTTCACCACGATGCACAAGG	0.532000													13	24					0	0	0.000566183	0	0
SCN11A	11280	broad.mit.edu	37	3	38924806	38924806	+	Missense_Mutation	SNP	C	T	T	rs147061364	byFrequency	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:38924806C>T	uc011ays.1	-	18	3336	c.3137G>A	c.(3136-3138)CGG>CAG	p.R1046Q	SCN11A_uc010hhn.1_Missense_Mutation_p.R124Q	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1046					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCAGGTTTTCCGCAGGTTCCA	0.453000													17	30					0	0	0.000422831	0	0
KBTBD5	131377	broad.mit.edu	37	3	42728221	42728221	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:42728221G>A	uc003clv.1	+	1	1211	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K		NM_152393	NP_689606	Q2TBA0	KBTB5_HUMAN	kelch repeat and BTB (POZ) domain containing 5	371	Kelch 1.									ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CTTCTACAACGAAGACAACAA	0.577000													8	21					0	0	0.000274275	0	0
TGM4	7047	broad.mit.edu	37	3	44943190	44943190	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:44943190G>A	uc003coc.3	+	7	905	c.832G>A	c.(832-834)GTG>ATG	p.V278M	TGM4_uc003cob.2_RNA	NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	278					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CCTGACTACAGGTAAGTGGCA	0.597000													9	29					0	0	0.000673444	0	0
FYCO1	79443	broad.mit.edu	37	3	46009380	46009380	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:46009380G>A	uc003cpb.3	-	8	1652	c.1446C>T	c.(1444-1446)TCC>TCT	p.S482S	FYCO1_uc011bal.1_Silent_p.S482S	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	482	Potential.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		CCTCCTCCCAGGAGCTCGTGT	0.622000													38	45					0	0	0.000228196	0	0
CCR2	729230	broad.mit.edu	37	3	46399292	46399292	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:46399292C>A	uc003cpn.3	+	2	759	c.274C>A	c.(274-276)CTT>ATT	p.L92I	CCR2_uc003cpm.3_Missense_Mutation_p.L92I	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	92	Helical; Name=2; (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		TCTGCTTTTTCTTATTACTCT	0.443000													74	151					6.47592e-44	6.8543e-43	0.000781405	1	0
DOCK3	1795	broad.mit.edu	37	3	50816191	50816191	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:50816191T>G	uc011bds.1	+	2	144	c.121_splice	c.e2+2	p.G41_splice		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3							cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AATGTGAAGGTGAGTATGGAC	0.358000													5	5					0	0	0.000602214	0	0
DOCK3	1795	broad.mit.edu	37	3	51101978	51101978	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:51101978G>A	uc011bds.1	+	6	438	c.415G>A	c.(415-417)GTG>ATG	p.V139M		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	139						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		TCAGGATCAGGTGCGGGAGGT	0.448000													30	65					0	0	0.000491102	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54871252	54871252	+	Missense_Mutation	SNP	G	A	A	rs41277453		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:54871252G>A	uc003dhf.2	+	15	1513	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E395K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E223K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	489	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TAAGCAGAACGAAACCGTGAG	0.517000													48	90					0	0	0.000781405	0	0
ERC2	26059	broad.mit.edu	37	3	56468689	56468689	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:56468689G>A	uc003dhr.1	-	2	603	c.347C>T	c.(346-348)TCA>TTA	p.S116L		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	116						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		ATCTGTGTATGAAAGGACATC	0.512000													38	63					0	0	0.000191422	0	0
MAGI1	9223	broad.mit.edu	37	3	65364976	65364976	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:65364976G>A	uc003dmn.2	-	17	3481	c.2955C>T	c.(2953-2955)ATC>ATT	p.I985I	MAGI1_uc003dmm.2_Silent_p.I1013I|MAGI1_uc003dmo.2_Silent_p.I1013I|MAGI1_uc003dmp.2_Silent_p.I985I|MAGI1_uc003dmq.1_RNA|MAGI1_uc010hnx.1_Silent_p.I296I	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1013	PDZ 5.|Interaction with FCHSD2.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CCGAGGACACGATGACGAAGC	0.522000													4	5					0	0	0.00024832	0	0
EPHA6	285220	broad.mit.edu	37	3	97202786	97202786	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:97202786C>T	uc010how.1	+	10	2126	c.2083C>T	c.(2083-2085)CCG>TCG	p.P695S	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.P61S|EPHA6_uc003drs.3_Missense_Mutation_p.P87S|EPHA6_uc003drr.3_Missense_Mutation_p.P87S|EPHA6_uc003drt.2_Missense_Mutation_p.P87S|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	600	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGTGCGCTTCCCGGGAATTAA	0.373000													19	42					0	0	0.000175454	0	0
OR5K1	26339	broad.mit.edu	37	3	98188784	98188784	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:98188784C>T	uc003dsm.2	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						GGCCTATGACCGCTATGTGGC	0.463000													42	62					0	0	0.000374591	0	0
ZBTB11	27107	broad.mit.edu	37	3	101378854	101378854	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:101378854G>A	uc003dve.3	-	6	2049	c.1819C>T	c.(1819-1821)CAG>TAG	p.Q607*		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	607	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCACTGTACTGAAACTGTTTT	0.358000													31	63					0	0	0.000692331	0	0
BBX	56987	broad.mit.edu	37	3	107435599	107435599	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:107435599C>G	uc010hpr.2	+	5	635	c.308C>G	c.(307-309)CCC>CGC	p.P103R	BBX_uc003dwk.3_Missense_Mutation_p.P103R|BBX_uc003dwl.3_Missense_Mutation_p.P103R|BBX_uc010hps.1_Missense_Mutation_p.P124R|BBX_uc003dwm.3_Missense_Mutation_p.P103R	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	103	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			CAGGAACACCCCAGGCTTGAT	0.473000													4	107					0	0	0.000602214	0	0
DRD3	1814	broad.mit.edu	37	3	113890624	113890624	+	Silent	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:113890624A>G	uc003ebd.2	-	3	639	c.216T>C	c.(214-216)GCT>GCC	p.A72A	DRD3_uc010hqn.1_Silent_p.A72A|DRD3_uc003ebb.1_Silent_p.A72A|DRD3_uc003ebc.1_Silent_p.A72A	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	72	Helical; Name=2.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	AGTCTGCCACAGCCAGGCTCA	0.562000													28	44					0	0	0.000720815	0	0
GAP43	2596	broad.mit.edu	37	3	115395218	115395218	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:115395218C>T	uc003ebq.2	+	2	775	c.389C>T	c.(388-390)TCC>TTC	p.S130F	GAP43_uc003ebr.2_Missense_Mutation_p.S166F	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	130					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		GCTCCTGCATCCTCAGAGGAG	0.597000													13	18					0	0	0.000219431	0	0
MYLK	4638	broad.mit.edu	37	3	123385073	123385073	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:123385073C>T	uc003ego.2	-	22	4106	c.3824G>A	c.(3823-3825)CGA>CAA	p.R1275Q	MYLK_uc010hrr.2_5'Flank|MYLK_uc011bjv.1_Missense_Mutation_p.R75Q|MYLK_uc011bjw.1_Missense_Mutation_p.R1275Q|MYLK_uc003egp.2_Missense_Mutation_p.R1206Q|MYLK_uc003egq.2_Missense_Mutation_p.R1275Q|MYLK_uc003egr.2_Missense_Mutation_p.R1206Q|MYLK_uc003egs.2_Missense_Mutation_p.R1099Q	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1275	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GACCTGCTTTCGGAACTTCAT	0.562000													15	28					0	0	0.000566183	0	0
RPN1	6184	broad.mit.edu	37	3	128339278	128339278	+	Silent	SNP	G	A	A	rs142951968		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:128339278G>A	uc003ekr.1	-	10	1876	c.1800C>T	c.(1798-1800)ATC>ATT	p.I600I	RPN1_uc011bkq.1_Silent_p.I428I	NM_002950	NP_002941	P04843	RPN1_HUMAN	ribophorin I precursor	600	Cytoplasmic (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|melanosome|oligosaccharyltransferase complex|rough microsome	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(114;0.189)		GGATGTGGTCGATCTTGGTGA	0.602000			T	EVI1	AML								13	45					0	0	0.000219431	0	0
PIK3R4	30849	broad.mit.edu	37	3	130463913	130463913	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:130463913G>A	uc003enj.2	-	2	731	c.150C>T	c.(148-150)GTC>GTT	p.V50V		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	50	Protein kinase.				fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						CCTTCACAACGACCAGGCCTT	0.408000													25	54					0	0	0.000409698	0	0
TF	7018	broad.mit.edu	37	3	133478161	133478161	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:133478161C>T	uc003epu.1	+	14	2919	c.1191C>T	c.(1189-1191)ATC>ATT	p.I397I	TF_uc011blt.1_Silent_p.I270I|TF_uc003epw.1_Intron|TF_uc003epv.1_Silent_p.I397I	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	397	Transferrin-like 2.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	AAGACTGCATCGCCAAGATCA	0.547000													25	38					0	0	0.00047179	0	0
MED12L	116931	broad.mit.edu	37	3	151102860	151102860	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:151102860C>T	uc003eyp.2	+	34	4902	c.4864C>T	c.(4864-4866)CGA>TGA	p.R1622*	MED12L_uc011bnz.1_Nonsense_Mutation_p.R1482*|P2RY12_uc011boa.1_5'Flank|P2RY12_uc003eyx.1_5'Flank|MED12L_uc003eyy.1_Nonsense_Mutation_p.R785*	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1622					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGACAAAGTTCGACAGTTACT	0.398000													54	119					0	0	0.000781405	0	0
PLCH1	23007	broad.mit.edu	37	3	155203356	155203356	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:155203356C>T	uc011bok.1	-	22	3064	c.2787G>A	c.(2785-2787)AGG>AGA	p.R929R	PLCH1_uc011boj.1_Silent_p.R929R|PLCH1_uc011bol.1_Silent_p.R891R	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	929					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TGCTCTTTTTCCTGCCTTTGG	0.498000													30	43					0	0	0.000339439	0	0
ZBBX	79740	broad.mit.edu	37	3	167045778	167045778	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:167045778C>T	uc003fep.2	-	11	1137	c.814G>A	c.(814-816)GGA>AGA	p.G272R	ZBBX_uc011bpc.1_Missense_Mutation_p.G272R|ZBBX_uc003feq.2_Missense_Mutation_p.G243R	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	272						intracellular	zinc ion binding			ovary(2)	2						TCATGATTTCCGGTTCTCCAT	0.318000													48	84					0	0	0.000781405	0	0
WDR49	151790	broad.mit.edu	37	3	167218038	167218038	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:167218038C>T	uc003fev.1	-	14	2184	c.1878G>A	c.(1876-1878)GTG>GTA	p.V626V	WDR49_uc003feu.1_Silent_p.V451V|WDR49_uc011bpd.1_Silent_p.V591V|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	626										large_intestine(1)|ovary(1)|skin(1)	3						CAGGTTTATTCACTTCAGGCA	0.433000													72	127					0	0	0.000781405	0	0
ABCF3	55324	broad.mit.edu	37	3	183907661	183907661	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:183907661C>T	uc003fmz.2	+	14	1466	c.1333C>T	c.(1333-1335)CGC>TGC	p.R445C	ABCF3_uc003fna.2_Missense_Mutation_p.R439C|ABCF3_uc003fnb.2_Missense_Mutation_p.R126C	NM_018358	NP_060828	Q9NUQ8	ABCF3_HUMAN	ATP-binding cassette, sub-family F (GCN20),	445							ATP binding|ATPase activity			ovary(3)|lung(1)	4	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.35e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TGACCGGTTTCGCTACAATGC	0.557000													17	23					0	0	0.000132079	0	0
ECE2	9718	broad.mit.edu	37	3	183995786	183995786	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:183995786G>A	uc003fni.3	+	5	944	c.906G>A	c.(904-906)GTG>GTA	p.V302V	ECE2_uc011brg.1_Silent_p.V230V|ECE2_uc011brh.1_Silent_p.V155V|ECE2_uc003fnl.3_Silent_p.V230V|ECE2_uc003fnm.3_Silent_p.V184V|ECE2_uc003fnk.3_Silent_p.V155V|ECE2_uc011bri.1_Silent_p.V217V|ECE2_uc010hxv.2_5'UTR	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	302	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCCTACAGGTGGAGCGCATTG	0.577000													17	28					0	0	0.000422831	0	0
ATP13A5	344905	broad.mit.edu	37	3	193052847	193052847	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr3:193052847C>T	uc011bsq.1	-	10	985	c.985G>A	c.(985-987)GAG>AAG	p.E329K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	329					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		ATAGTGTTCTCCATCTGGGGC	0.438000													40	71					0	0	0.000781405	0	0
SLC26A1	10861	broad.mit.edu	37	4	982735	982735	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:982735C>T	uc003gcb.2	-	4	2370	c.1992G>A	c.(1990-1992)GGG>GGA	p.G664G	SLC26A1_uc003gbx.2_Intron|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Silent_p.G664G	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	664	STAS.					integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CGGGGCCCTCCCCGAGGAAGC	0.682000													5	2					0	0	0.000602214	0	0
SLC26A1	10861	broad.mit.edu	37	4	984978	984978	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:984978C>G	uc003gcb.2	-	3	892	c.514G>C	c.(514-516)GGG>CGG	p.G172R	SLC26A1_uc003gbx.2_Missense_Mutation_p.G172R|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.G172R	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	172						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			CAGTCACGCCCGCAGTCCAGC	0.701000													3	28					0	0	0.000602214	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6087196	6087196	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:6087196C>T	uc003giu.3	-	4	1061	c.785G>A	c.(784-786)AGA>AAA	p.R262K	JAKMIP1_uc010idb.1_Missense_Mutation_p.R262K|JAKMIP1_uc010idc.1_Missense_Mutation_p.R97K|JAKMIP1_uc010idd.1_Missense_Mutation_p.R262K|JAKMIP1_uc011bwc.1_Missense_Mutation_p.R97K|JAKMIP1_uc003giv.3_Missense_Mutation_p.R262K|JAKMIP1_uc010ide.2_Missense_Mutation_p.R262K	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	262	Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGGGAGCTCTCTCTTTGGACT	0.627000													10	27					0	0	6.40141e-05	0	0
WFS1	7466	broad.mit.edu	37	4	6302868	6302868	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:6302868C>T	uc003giy.2	+	8	1512	c.1346C>T	c.(1345-1347)ACC>ATC	p.T449I	WFS1_uc003gix.2_Missense_Mutation_p.T449I|WFS1_uc003giz.2_Missense_Mutation_p.T267I	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	449					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		AGCCTGAGCACCCATGCAGAG	0.632000													88	136					0	0	0.000781405	0	0
WFS1	7466	broad.mit.edu	37	4	6304159	6304159	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:6304159C>T	uc003giy.2	+	8	2803	c.2637C>T	c.(2635-2637)TTC>TTT	p.F879F	WFS1_uc003gix.2_Silent_p.F879F|WFS1_uc003giz.2_Silent_p.F697F	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	879	Helical; (Potential).|Poly-Phe.				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		AGTTCGCCTTCGACTTCTTTT	0.627000													54	87					0	0	0.000781405	0	0
SLIT2	9353	broad.mit.edu	37	4	20493518	20493518	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:20493518G>A	uc003gpr.1	+	9	1114	c.910G>A	c.(910-912)GAA>AAA	p.E304K	SLIT2_uc003gps.1_Missense_Mutation_p.E304K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	304	LRR 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GACCATCACAGAAATGTATGT	0.458000													25	37					0	0	0.000279167	0	0
SLIT2	9353	broad.mit.edu	37	4	20541135	20541135	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:20541135T>A	uc003gpr.1	+	19	2108	c.1904T>A	c.(1903-1905)CTT>CAT	p.L635H	SLIT2_uc003gps.1_Missense_Mutation_p.L627H	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	635	LRR 16.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GTGCGTTTGCTTTCTTTGTAT	0.383000													35	35					0	0	0.000191422	0	0
RBPJ	3516	broad.mit.edu	37	4	26417194	26417194	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:26417194C>T	uc003grx.1	+	5	528	c.292C>T	c.(292-294)CAA>TAA	p.Q98*	RBPJ_uc003gry.1_Nonsense_Mutation_p.Q83*|RBPJ_uc003grz.1_Nonsense_Mutation_p.Q98*|RBPJ_uc011bxt.1_Nonsense_Mutation_p.Q98*|RBPJ_uc003gsa.1_Nonsense_Mutation_p.Q84*|RBPJ_uc003gsb.1_Nonsense_Mutation_p.Q85*|RBPJ_uc003gsc.1_Nonsense_Mutation_p.Q84*	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	98					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				ACAAGAGTCTCAACCGTGTGC	0.418000													65	106					0	0	0.000781405	0	0
KCTD8	386617	broad.mit.edu	37	4	44177155	44177155	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:44177155G>A	uc003gwu.2	-	2	1358	c.1074C>T	c.(1072-1074)TCC>TCT	p.S358S		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	358						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						TGTCACAACTGGAAGTGGAGA	0.463000										HNSCC(17;0.042)			29	49					0	0	0.000184323	0	0
YIPF7	285525	broad.mit.edu	37	4	44624578	44624578	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:44624578G>A	uc010ifx.1	-	6	713	c.696C>T	c.(694-696)ATC>ATT	p.I232I		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	232	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0						GGGATGACATGATTCCAAAGA	0.458000													16	32					0	0	0.00074312	0	0
GABRB1	2560	broad.mit.edu	37	4	47427982	47427982	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:47427982C>T	uc003gxh.2	+	9	1746	c.1372C>T	c.(1372-1374)CCC>TCC	p.P458S	GABRB1_uc011bze.1_Missense_Mutation_p.P388S	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	458	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AATGTTTTTCCCCATCACCTT	0.453000													34	46					0	0	0.000437636	0	0
FIP1L1	81608	broad.mit.edu	37	4	54294256	54294256	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:54294256C>T	uc003gzy.2	+	13	1266	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	PDGFRA_uc003haa.2_Intron|FIP1L1_uc003gzx.3_Silent_p.F345F|FIP1L1_uc011bzt.1_Silent_p.F324F|FIP1L1_uc011bzu.1_Silent_p.F345F|FIP1L1_uc003gzz.2_Silent_p.F286F|FIP1L1_uc003hab.2_Silent_p.F325F|FIP1L1_uc003hac.2_Silent_p.F105F|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_5'UTR|FIP1L1_uc003hae.2_5'UTR	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	360	Pro-rich.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CTCCGTTTTTCCCTCCAGGAG	0.328000			T	PDGFRA	idiopathic hypereosinophilic syndrome								14	18					0	0	0.000219431	0	0
AASDH	132949	broad.mit.edu	37	4	57209798	57209798	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:57209798G>A	uc003hbn.2	-	13	2858	c.2705C>T	c.(2704-2706)CCG>CTG	p.P902L	AASDH_uc010ihb.2_Missense_Mutation_p.P417L|AASDH_uc011caa.1_Silent_p.S694S|AASDH_uc003hbo.2_Missense_Mutation_p.P802L|AASDH_uc011cab.1_Missense_Mutation_p.P417L|AASDH_uc010ihc.2_Intron	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	902					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				GTTCAAACACGGAGAGGAAAA	0.333000													14	23					0	0	0.000219431	0	0
POLR2B	5431	broad.mit.edu	37	4	57860646	57860646	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:57860646C>T	uc003hcl.1	+	4	363	c.320C>T	c.(319-321)CCA>CTA	p.P107L	POLR2B_uc011cae.1_Missense_Mutation_p.P100L|POLR2B_uc011caf.1_Missense_Mutation_p.P32L	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	107					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					GCTCCTTCACCAATGATGCCC	0.338000													17	18					0	0	0.000132079	0	0
LPHN3	23284	broad.mit.edu	37	4	62903453	62903453	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:62903453G>A	uc010ihh.2	+	21	3565	c.3392G>A	c.(3391-3393)CGA>CAA	p.R1131Q	LPHN3_uc003hcq.3_Missense_Mutation_p.R1131Q|LPHN3_uc003hct.2_Missense_Mutation_p.R515Q	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1109	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GGCTAGGTACGAAAAGAGTAT	0.373000													45	53					0	0	0.000781405	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093661	69093661	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:69093661G>A	uc003hdw.3	-	10	1355	c.1219C>T	c.(1219-1221)CGC>TGC	p.R407C		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	407	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATCCAATTGCGATAAGAAGTC	0.398000													28	44					0	0	0.000692331	0	0
PARM1	25849	broad.mit.edu	37	4	75937961	75937961	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:75937961G>A	uc003hih.1	+	2	610	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	124	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CACGTTGGAGGAACACAGCTC	0.587000													26	42					0	0	0.000586117	0	0
SPARCL1	8404	broad.mit.edu	37	4	88415018	88415018	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:88415018C>T	uc010ikm.2	-	5	1506	c.934G>A	c.(934-936)GAA>AAA	p.E312K	SPARCL1_uc011cdc.1_Missense_Mutation_p.E187K|SPARCL1_uc003hqs.3_Missense_Mutation_p.E312K|SPARCL1_uc011cdd.1_Missense_Mutation_p.E187K|SPARCL1_uc003hqt.2_Missense_Mutation_p.E312K	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	312					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		GTCTTTTCTTCTGTCTCTTTG	0.388000													88	104					0	0	0.000781405	0	0
TSPAN5	10098	broad.mit.edu	37	4	99428861	99428861	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:99428861G>C	uc003hub.2	-	2	450	c.100C>G	c.(100-102)CTT>GTT	p.L34V	TSPAN5_uc011cdz.1_5'UTR	NM_005723	NP_005714	P62079	TSN5_HUMAN	transmembrane 4 superfamily member 9	34	Helical; (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;1.89e-07)		CCAATTCCAAGAAATGTTATT	0.328000													16	100					0	0	0.000132079	0	0
ALPK1	80216	broad.mit.edu	37	4	113352855	113352855	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:113352855C>T	uc003iap.3	+	11	2431	c.2152C>T	c.(2152-2154)CGT>TGT	p.R718C	ALPK1_uc003ian.3_Missense_Mutation_p.R718C|ALPK1_uc011cfx.1_Missense_Mutation_p.R640C|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.R546C	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	718							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		ACCCTCATATCGTTCTGCTTC	0.473000													32	28					0	0	0.000814825	0	0
ANK2	287	broad.mit.edu	37	4	114276157	114276157	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:114276157C>T	uc003ibe.3	+	38	6483	c.6383C>T	c.(6382-6384)CCA>CTA	p.P2128L	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.P2143L	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2095					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CAGATCAGCCCAGATAGGAAA	0.473000													17	22					0	0	0.000958276	0	0
KIAA1109	84162	broad.mit.edu	37	4	123264594	123264594	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:123264594C>T	uc003ieh.2	+	71	12427	c.12382C>T	c.(12382-12384)CGA>TGA	p.R4128*	KIAA1109_uc003iem.2_Nonsense_Mutation_p.R484*|KIAA1109_uc003ien.2_Nonsense_Mutation_p.R62*	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4128	Ser-rich.				regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CCCTCTTGGCCGAAGTCGACA	0.433000													32	57					0	0	0.000491102	0	0
MAML3	55534	broad.mit.edu	37	4	140810856	140810856	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:140810856G>A	uc003ihz.1	-	3	2474	c.1722C>T	c.(1720-1722)ATC>ATT	p.I574I	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	574	Asn-rich.|Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GCTGCTGATTGATCATATTCA	0.413000													143	239					0	0	0.000781405	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543940	141543940	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:141543940G>A	uc010ioj.2	-	21	3482	c.3210C>T	c.(3208-3210)TTC>TTT	p.F1070F		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1070						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GCTGGGCCACGAACAACTTGC	0.642000													5	11					0	0	0.000602214	0	0
TBC1D9	23158	broad.mit.edu	37	4	141545347	141545347	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:141545347G>A	uc010ioj.2	-	20	3273	c.3001C>T	c.(3001-3003)CGT>TGT	p.R1001C		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1001						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				AAATAATTACGATTTTCTTGG	0.348000													10	21					0	0	0.000151284	0	0
LRBA	987	broad.mit.edu	37	4	151388899	151388899	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:151388899G>A	uc010ipj.2	-	45	7213	c.6739C>T	c.(6739-6741)CCT>TCT	p.P2247S	LRBA_uc010ipi.2_5'UTR|LRBA_uc003ils.3_Missense_Mutation_p.P137S|LRBA_uc003ilt.3_Missense_Mutation_p.P895S|LRBA_uc003ilu.3_Missense_Mutation_p.P2236S	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2247	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ATGACCCAAGGAAACACTGGA	0.333000													37	61					0	0	0.000509022	0	0
FHDC1	85462	broad.mit.edu	37	4	153897163	153897163	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:153897163C>T	uc003inf.2	+	11	2795	c.2720C>T	c.(2719-2721)CCC>CTC	p.P907L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	907					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					AAGGTCATGCCCATCACCAAG	0.677000													7	13					0	0	0.000157383	0	0
RXFP1	59350	broad.mit.edu	37	4	159569761	159569761	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:159569761G>A	uc003ipz.2	+	17	1949	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K	RXFP1_uc011cja.1_Missense_Mutation_p.E518K|RXFP1_uc010iqo.2_Missense_Mutation_p.E575K|RXFP1_uc011cjb.1_Missense_Mutation_p.E521K|RXFP1_uc010iqk.2_Missense_Mutation_p.E491K|RXFP1_uc011cjc.1_Missense_Mutation_p.E542K|RXFP1_uc011cjd.1_Missense_Mutation_p.E542K|RXFP1_uc010iql.2_Missense_Mutation_p.E467K|RXFP1_uc011cje.1_Missense_Mutation_p.E650K|RXFP1_uc010iqm.2_Missense_Mutation_p.E590K|RXFP1_uc011cjf.1_Missense_Mutation_p.E492K|RXFP1_uc010iqn.2_Missense_Mutation_p.E568K	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	623	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AGTTAAAAAAGAGATGATCCT	0.343000													36	42					0	0	0.000814825	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656143	167656143	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:167656143C>T	uc003iri.1	-	12	1381	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	SPOCK3_uc011cjp.1_Missense_Mutation_p.E371K|SPOCK3_uc011cjq.1_Missense_Mutation_p.E423K|SPOCK3_uc011cjr.1_Missense_Mutation_p.E294K|SPOCK3_uc003irj.1_Missense_Mutation_p.E411K|SPOCK3_uc011cjs.1_Missense_Mutation_p.E363K|SPOCK3_uc011cjt.1_Missense_Mutation_p.E322K|SPOCK3_uc011cju.1_Missense_Mutation_p.E307K|SPOCK3_uc011cjv.1_Missense_Mutation_p.E316K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	414	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcttcaatttcatcttcatca	0.060000													23	24					0	0	0.000229342	0	0
SAP30	8819	broad.mit.edu	37	4	174294556	174294556	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:174294556A>T	uc003itd.2	+	2	572	c.331A>T	c.(331-333)ATA>TTA	p.I111L		NM_003864	NP_003855	O75446	SAP30_HUMAN	Sin3A-associated protein, 30kDa	111	Interaction with NCOR1 (By similarity).|Atypical.				transcription, DNA-dependent	histone deacetylase complex	DNA binding|metal ion binding|protein binding|transcription corepressor activity			ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.15e-17)|Epithelial(43;4.33e-16)|OV - Ovarian serous cystadenocarcinoma(60;6.62e-09)|STAD - Stomach adenocarcinoma(60;0.00278)|GBM - Glioblastoma multiforme(59;0.00659)|LUSC - Lung squamous cell carcinoma(193;0.0919)		GCATCTTTACATATGTGATTA	0.338000													13	31					0	0	0.000151284	0	0
ADAM29	11086	broad.mit.edu	37	4	175897079	175897079	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:175897079G>A	uc003iuc.2	+	5	1073	c.403G>A	c.(403-405)GAA>AAA	p.E135K	ADAM29_uc003iud.2_Missense_Mutation_p.E135K|ADAM29_uc010irr.2_Missense_Mutation_p.E135K|ADAM29_uc011cki.1_Missense_Mutation_p.E135K	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	135					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		CTTTGCTTATGAAATCAAGCC	0.413000													24	42					0	0	0.000586117	0	0
ADAM29	11086	broad.mit.edu	37	4	175897258	175897258	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:175897258G>A	uc003iuc.2	+	5	1252	c.582G>A	c.(580-582)TGG>TGA	p.W194*	ADAM29_uc003iud.2_Nonsense_Mutation_p.W194*|ADAM29_uc010irr.2_Nonsense_Mutation_p.W194*|ADAM29_uc011cki.1_Nonsense_Mutation_p.W194*	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	194	Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGGGCTGGTGGATCCATTTTA	0.358000													28	45					0	0	0.000720815	0	0
GPM6A	2823	broad.mit.edu	37	4	176594896	176594896	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr4:176594896C>T	uc003iuf.2	-	3	1126	c.322G>A	c.(322-324)GGG>AGG	p.G108R	GPM6A_uc011ckj.1_Missense_Mutation_p.G101R|GPM6A_uc003iug.2_Missense_Mutation_p.G108R|GPM6A_uc003iuh.2_Missense_Mutation_p.G97R	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	108	Cytoplasmic (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		TTGATGGCCCCAGTTGTGAAG	0.433000													9	26					0	0	0.000442599	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	182231	182231	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:182231C>T	uc003jak.2	+	18	3659	c.3609C>T	c.(3607-3609)TCC>TCT	p.S1203S		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	1203	Ser-rich.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GCAGCCAGTCCTCCTCCATCC	0.647000													17	25					0	0	0.000566183	0	0
SLC6A3	6531	broad.mit.edu	37	5	1421994	1421994	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:1421994C>T	uc003jck.2	-	5	910	c.789G>A	c.(787-789)GGG>GGA	p.G263G		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	263					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GCCTCACCTTCCCTGAGGTCT	0.637000													24	47					0	0	0.000227799	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5146299	5146299	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:5146299G>A	uc003jdl.2	+	3	370	c.232G>A	c.(232-234)GAA>AAA	p.E78K	ADAMTS16_uc003jdk.1_Missense_Mutation_p.E78K|ADAMTS16_uc003jdj.1_Missense_Mutation_p.E78K	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	78					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CGTGTCCCATGAAATCATGCA	0.532000													22	25					0	0	0.000184323	0	0
DNAH5	1767	broad.mit.edu	37	5	13777321	13777321	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:13777321G>A	uc003jfd.2	-	54	9137	c.9095C>T	c.(9094-9096)TCA>TTA	p.S3032L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3032	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTCACCTGATGATAAAACATT	0.358000									Kartagener_syndrome				22	28					0	0	0.000229342	0	0
PDZD2	23037	broad.mit.edu	37	5	32048645	32048645	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:32048645G>T	uc003jhl.2	+	8	1908	c.1520G>T	c.(1519-1521)GGG>GTG	p.G507V	PDZD2_uc003jhm.2_Missense_Mutation_p.G507V|PDZD2_uc011cnx.1_Missense_Mutation_p.G333V	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	507					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TTTTCTCAAGGGGGTGTACAC	0.488000													10	14					2.27111e-07	2.38043e-06	0.00010058	1	0
AGXT2	64902	broad.mit.edu	37	5	35035329	35035329	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:35035329G>A	uc003jjf.2	-	5	658	c.579C>T	c.(577-579)TTC>TTT	p.F193F	AGXT2_uc011com.1_Silent_p.F193F|AGXT2_uc011con.1_Silent_p.F101F	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	193					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GTGATTACCTGAAAGAAATGA	0.443000													53	100					0	0	0.000781405	0	0
SPEF2	79925	broad.mit.edu	37	5	35740049	35740050	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:35740049_35740050GG>AA	uc003jjo.2	+	22	3203_3204	c.3092_3093GG>AA	c.(3091-3093)TGG>TAA	p.W1031*	SPEF2_uc003jjp.1_Nonsense_Mutation_p.W517*	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1031					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GTACCTTACTGGGAACTAATAG	0.342000													16	33					0	0	6.4e-05	0	0
C5orf42	65250	broad.mit.edu	37	5	37108561	37108561	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:37108561G>A	uc011cpa.1	-	51	9482	c.9251C>T	c.(9250-9252)CCG>CTG	p.P3084L	C5orf42_uc003jko.1_Missense_Mutation_p.P115L|C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Missense_Mutation_p.P1602L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P2177L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	3084										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			ACTATGACACGGAGCATTAGA	0.373000													30	48					0	0	0.000409698	0	0
WDR70	55100	broad.mit.edu	37	5	37725129	37725129	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:37725129C>T	uc003jkv.2	+	16	1749	c.1691C>T	c.(1690-1692)CCT>CTT	p.P564L		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	564										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCGCATAAACCTGAACCTCCT	0.537000													19	36					0	0	0.000132079	0	0
C9	735	broad.mit.edu	37	5	39341799	39341799	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:39341799G>A	uc003jlv.3	-	3	276	c.187C>T	c.(187-189)CGT>TGT	p.R63C		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	63	TSP type-1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CTTCTTGAACGAAACTGCACA	0.438000													20	21					0	0	0.000229342	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41054920	41054920	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:41054920G>A	uc003jmj.3	-	11	1546	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	352							binding			ovary(6)|central_nervous_system(2)	8						CTATTGAAATGATGTGATCCC	0.373000													28	57					0	0	0.000227799	0	0
PDE8B	8622	broad.mit.edu	37	5	76621535	76621535	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:76621535G>A	uc003kfa.2	+	3	616	c.571G>A	c.(571-573)GAT>AAT	p.D191N	PDE8B_uc003kfb.2_Missense_Mutation_p.D171N|PDE8B_uc003kfc.2_Missense_Mutation_p.D191N|PDE8B_uc003kfd.2_Missense_Mutation_p.D191N|PDE8B_uc003kfe.2_Missense_Mutation_p.D191N	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	191					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TCAGAACTTCGATGCAGAAGC	0.333000													86	144					0	0	0.000781405	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102508931	102508931	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:102508931C>T	uc003kod.3	+	20	2878	c.2359C>T	c.(2359-2361)CGC>TGC	p.R787C	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.R787C|PPIP5K2_uc003kof.2_Missense_Mutation_p.R88C	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	787					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TAGAAAAATTCGCTCAGACCT	0.353000													22	48					0	0	0.000375601	0	0
SLC27A6	28965	broad.mit.edu	37	5	128326113	128326113	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:128326113C>T	uc003kuy.2	+	5	1321	c.925C>T	c.(925-927)CAG>TAG	p.Q309*	SLC27A6_uc003kuz.2_Nonsense_Mutation_p.Q309*	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	309					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GACTGTGTTTCAGTATATTGG	0.348000													16	35					0	0	0.000422831	0	0
WNT8A	7478	broad.mit.edu	37	5	137424723	137424723	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:137424723C>T	uc003lcd.1	+	5	480	c.475C>T	c.(475-477)CTG>TTG	p.L159L	BRD8_uc003lcc.1_Intron|WNT8A_uc011cyj.1_Silent_p.L177L|WNT8A_uc011cyk.1_Silent_p.L177L	NM_058244	NP_490645	Q9H1J5	WNT8A_HUMAN	wingless-type MMTV integration site family,	159					brain segmentation|canonical Wnt receptor signaling pathway involved in neural crest cell differentiation|cell migration involved in gastrulation|dorsal/ventral pattern formation|ectoderm development|endoderm development|eye development|hindbrain development|mesodermal cell fate commitment|negative regulation of Wnt receptor signaling pathway|neural crest cell fate commitment|neural plate pattern specification|notochord development|palate development|polarity specification of anterior/posterior axis|polarity specification of proximal/distal axis|positive regulation of fibroblast growth factor receptor signaling pathway|regulation of transcription involved in anterior/posterior axis specification|response to retinoic acid|somitogenesis|spinal cord anterior/posterior patterning|tail morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			ovary(1)|lung(1)|breast(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TGCCAGAGCCCTGATGAATCT	0.522000													59	75					0	0	0.000781405	0	0
FAM53C	51307	broad.mit.edu	37	5	137680896	137680896	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:137680896C>T	uc003lcv.2	+	4	989	c.519C>T	c.(517-519)CTC>CTT	p.L173L	FAM53C_uc003lcw.2_Silent_p.L173L|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	173										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCAGGTTCCTCCAAGCTCCCA	0.642000													27	59					0	0	0.000184323	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255090	140255090	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140255090C>T	uc003lic.2	+	1	160	c.33C>T	c.(31-33)TCC>TCT	p.S11S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.S11S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	11					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCGGGATCCCAGCGTCTGC	0.567000													9	18					0	0	0.000673444	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475751	140475751	+	Silent	SNP	C	T	T	rs17844374		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140475751C>T	uc003lil.2	+	1	1515	c.1377C>T	c.(1375-1377)ACC>ACT	p.T459T	PCDHB2_uc003lim.1_Silent_p.T120T	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	459	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCCTACACCCTGTTCGTCC	0.627000													29	53					0	0	0.000339439	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501619	140501619	+	Silent	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140501619G>C	uc003lip.1	+	1	39	c.39G>C	c.(37-39)GTG>GTC	p.V13V		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	13					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAGGCAAGTGTTGGCCTTTA	0.483000													3	55					0	0	0.00024832	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553534	140553534	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140553534G>A	uc003lit.2	+	1	1292	c.1118G>A	c.(1117-1119)AGA>AAA	p.R373K		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	373	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTAGAGACAGAGATTCCGGG	0.473000													13	28					0	0	0.000422831	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558651	140558652	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140558651_140558652CC>AA	uc011dai.1	+	1	1222_1223	c.1036_1037CC>AA	c.(1036-1038)CCA>AAA	p.P346K	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	346	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGACCATGCCCCAGAAGTTACC	0.446000													16	697					0	0	6.4e-05	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595977	140595977	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:140595977C>T	uc003lja.1	+	1	2469	c.2282C>T	c.(2281-2283)ACC>ATC	p.T761I		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	761	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTCAGGGACCAATGAGTTC	0.552000													13	34					0	0	0.000151284	0	0
KIAA0141	9812	broad.mit.edu	37	5	141307820	141307820	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:141307820C>T	uc003lls.2	+	4	491	c.369C>T	c.(367-369)CCC>CCT	p.P123P	KIAA0141_uc003llt.2_Silent_p.P123P	NM_001142603	NP_001136075	Q14154	DELE_HUMAN	hypothetical protein LOC9812 precursor	123					apoptosis|regulation of caspase activity	mitochondrion	protein binding			skin(1)	1		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCACAGTCCCCTGGACCGTT	0.632000													21	26					0	0	0.000229342	0	0
SPINK5	11005	broad.mit.edu	37	5	147498037	147498037	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:147498037G>A	uc003lox.2	+	23	2223	c.2150G>A	c.(2149-2151)GGA>GAA	p.G717E	SPINK5_uc010jgs.1_Missense_Mutation_p.G689E|SPINK5_uc010jgr.2_Missense_Mutation_p.G698E|SPINK5_uc003low.2_Missense_Mutation_p.G717E|SPINK5_uc003loy.2_Missense_Mutation_p.G717E	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	717	Kazal-like 11.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGAAAAATGGAAGACTCAGC	0.403000													24	25					0	0	0.000295444	0	0
HTR4	3360	broad.mit.edu	37	5	147830816	147830817	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:147830816_147830817CC>AA	uc003lpj.1	-	7	1259_1260	c.1095_1096GG>TT	c.(1093-1098)AGGGGA>AGTTGA	p.365_366RG>S*	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_3'UTR	NM_001040169	NP_001035259	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform a	Error:Variant_position_missing_in_Q13639_after_alignment					G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	TGATGATGTCCCCTGTGCAGAA	0.475000													9	199					0	0	6.4e-05	0	0
ANXA6	309	broad.mit.edu	37	5	150518926	150518926	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:150518926G>A	uc003ltl.1	-	4	344	c.192C>T	c.(190-192)TCC>TCT	p.S64S	ANXA6_uc011dcp.1_Silent_p.S32S|ANXA6_uc003ltm.1_Silent_p.S64S|ANXA6_uc003ltn.1_Silent_p.S64S|ANXA6_uc003lto.1_Intron	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	64	Annexin 1.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCGTAGAGGGACTTGTAGC	0.547000													5	21					0	0	3.59834e-05	0	0
GABRA6	2559	broad.mit.edu	37	5	161113261	161113261	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:161113261G>A	uc003lyu.2	+	2	402	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	22	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AGGGAAACTCGAAGTTGAAGG	0.478000										TCGA Ovarian(5;0.080)			37	46					0	0	0.000814825	0	0
GABRA6	2559	broad.mit.edu	37	5	161119083	161119083	+	Silent	SNP	C	T	T	rs148840190		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:161119083C>T	uc003lyu.2	+	8	1301	c.963C>T	c.(961-963)TTC>TTT	p.F321F	GABRA6_uc003lyv.2_Silent_p.F92F	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	321	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity	p.F321F(1)		ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTATCGAGTTCGCAGCTGTCA	0.478000										TCGA Ovarian(5;0.080)			28	48					0	0	0.000227799	0	0
SLIT3	6586	broad.mit.edu	37	5	168179971	168179971	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:168179971G>A	uc003mab.2	-	18	2382	c.1962C>T	c.(1960-1962)TCC>TCT	p.S654S	SLIT3_uc010jjg.2_Silent_p.S654S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	654					apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGTGGACAGGGAGACAAGCG	0.597000													16	8					0	0	0.000422831	0	0
BTNL9	153579	broad.mit.edu	37	5	180475028	180475028	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr5:180475028G>A	uc003mmt.2	+	3	442	c.211G>A	c.(211-213)GAG>AAG	p.E71K	BTNL9_uc011dhi.1_Missense_Mutation_p.E2K	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	71	Extracellular (Potential).|Ig-like V-type.					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCAGCAAATGGAGATCCGCTG	0.622000													10	21					0	0	0.000673444	0	0
HIVEP1	3096	broad.mit.edu	37	6	12123060	12123060	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:12123060T>C	uc003nac.2	+	4	3211	c.3032T>C	c.(3031-3033)CTA>CCA	p.L1011P	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1011					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CCTCAGATTCTACACTACAGA	0.488000													167	84					0	0	0.000781405	0	0
GFOD1	54438	broad.mit.edu	37	6	13365563	13365563	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:13365563G>A	uc003nat.1	-	2	1250	c.585C>T	c.(583-585)GTC>GTT	p.V195V	GFOD1_uc003nas.1_Silent_p.V92V	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	195						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			GCAGCCCGTGGACCTTGACGG	0.612000													19	29					0	0	0.00074312	0	0
SCAND3	114821	broad.mit.edu	37	6	28554272	28554272	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:28554272C>T	uc003nlo.2	-	1	841	c.223G>A	c.(223-225)GAA>AAA	p.E75K	uc003nlp.1_5'Flank	NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	75	SCAN box.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CGGCAAAGTTCCCGCAGTTGA	0.542000													21	57					0	0	0.000175454	0	0
TRIM27	5987	broad.mit.edu	37	6	28876588	28876588	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:28876588G>A	uc003nlr.2	-	6	1275	c.916C>T	c.(916-918)CAA>TAA	p.Q306*	TRIM27_uc003nls.2_Nonsense_Mutation_p.Q306*|TRIM27_uc003nlt.1_Nonsense_Mutation_p.Q306*	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	306	Potential.|B30.2/SPRY.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						AATTTACCTTGGATTTTCTCC	0.373000			T	RET	papillary thyroid								48	22					0	0	0.000781405	0	0
OR5V1	81696	broad.mit.edu	37	6	29323323	29323323	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:29323323G>A	uc011dlo.1	-	1	732	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						GCAAATGTAGGAAAGTACGAT	0.468000													27	94					0	0	0.000227799	0	0
OR2H1	26716	broad.mit.edu	37	6	29430333	29430333	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:29430333C>T	uc003nmi.2	+	3	1230	c.787C>T	c.(787-789)CCG>TCG	p.P263S	OR2H1_uc003nmj.1_Missense_Mutation_p.P263S|OR2H1_uc010jri.1_Missense_Mutation_p.P185S	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCCAAAAATCCGTATGCCCA	0.517000													17	97					0	0	0.000958276	0	0
ZFP57	346171	broad.mit.edu	37	6	29640402	29640402	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:29640402C>T	uc011dlw.1	-	4	1637	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	ZFP57_uc003nnl.3_Missense_Mutation_p.E476K	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	412					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						TGCTTCCATTCCTCCCCAGCC	0.557000													18	60					0	0	0.00074312	0	0
HLA-E	3133	broad.mit.edu	37	6	30459140	30459140	+	Silent	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:30459140G>C	uc003nqg.2	+	4	875	c.837G>C	c.(835-837)ACG>ACC	p.T279T	HLA-E_uc011dmg.1_RNA|HLA-E_uc011dmh.1_Silent_p.T320T	NM_005516	NP_005507	P13747	HLAE_HUMAN	major histocompatibility complex, class I, E	279	Ig-like C1-type.|Alpha-3.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			central_nervous_system(4)|ovary(1)	5						AGAGATACACGTGCCATGTGC	0.622000													3	80					0	0	0.00024832	0	0
C6orf27	80737	broad.mit.edu	37	6	31736937	31736937	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:31736937C>T	uc011dog.1	-	10	1599	c.1361G>A	c.(1360-1362)CGA>CAA	p.R454Q	C6orf27_uc003nxd.2_Missense_Mutation_p.R129Q|C6orf27_uc011doh.1_RNA	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	454						extracellular region				ovary(3)	3						ACGCCGAGCTCGACCCTGAAC	0.517000													70	317					0	0	0.000781405	0	0
VARS	7407	broad.mit.edu	37	6	31749490	31749490	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:31749490G>A	uc003nxe.2	-	20	2819	c.2396C>T	c.(2395-2397)TCC>TTC	p.S799F	VARS_uc003nxf.1_5'Flank|VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	799					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GCCCAAAATGGATAAGGGGAA	0.617000													33	136					0	0	0.000491102	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928448	31928448	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:31928448A>G	uc003nyn.1	+	6	864	c.475A>G	c.(475-477)ATG>GTG	p.M159V	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Missense_Mutation_p.M1V|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	159						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						CCCAGGGGGGATGGATGAACC	0.522000													6	495					0	0	8.12818e-05	0	0
AGER	177	broad.mit.edu	37	6	32148962	32148963	+	Missense_Mutation	DNP	CG	AT	AT	rs147340908	byFrequency	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:32148962_32148963CG>AT	uc003oal.1	-	11	1196_1197	c.1172_1173CG>AT	c.(1171-1173)TCG>TAT	p.S391Y	AGER_uc003oak.1_Missense_Mutation_p.S120Y|AGER_uc003oar.2_Missense_Mutation_p.S290Y|AGER_uc011dpm.1_Missense_Mutation_p.S281Y|AGER_uc011dpn.1_3'UTR|AGER_uc010jtv.1_3'UTR|AGER_uc011dpo.1_3'UTR|AGER_uc003oam.1_RNA|AGER_uc003oan.1_Nonsense_Mutation_p.G340*|AGER_uc003oap.1_Missense_Mutation_p.S407Y|AGER_uc003oat.1_3'UTR|AGER_uc003oao.1_RNA|AGER_uc003oaq.1_Missense_Mutation_p.S377Y|AGER_uc010jtw.1_RNA|AGER_uc003oas.1_3'UTR|AGER_uc003oau.1_3'UTR	NM_001136	NP_001127	Q15109	RAGE_HUMAN	advanced glycosylation end product-specific	391	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response|neuron projection development|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	S100 alpha binding|transmembrane receptor activity			breast(1)	1						CAGGTTCCTCCGACTGATTCAG	0.564000													14	382					0	0	6.4e-05	0	0
NOTCH4	4855	broad.mit.edu	37	6	32181485	32181485	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:32181485C>T	uc003obb.2	-	14	2439	c.2300G>A	c.(2299-2301)AGC>AAC	p.S767N	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	767	EGF-like 20.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GTAGTCAGTGCTGGTTTGGCA	0.567000													35	132					0	0	0.000692331	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333705	33333705	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:33333705C>T	uc003shx.2	-	1	435	c.301G>A	c.(301-303)GAA>AAA	p.E101K		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						TTCTTCATTTCATGCTCAATC	0.582000													18	75					0	0	0.000375601	0	0
FGD2	221472	broad.mit.edu	37	6	36979567	36979567	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:36979567C>T	uc010jwp.1	+	4	635	c.464C>T	c.(463-465)TCC>TTC	p.S155F	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	155	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						TCCAACATCTCCTCCATCTAT	0.592000													17	59					0	0	0.000958276	0	0
GLP1R	2740	broad.mit.edu	37	6	39040656	39040656	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:39040656G>A	uc003ooj.3	+	6	588	c.528G>A	c.(526-528)AGG>AGA	p.R176R	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	176	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	ACTGCACCAGGAACTACATCC	0.552000													21	79					0	0	0.00047179	0	0
KIF6	221458	broad.mit.edu	37	6	39325081	39325081	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:39325081C>T	uc003oot.2	-	19	2247	c.2152G>A	c.(2152-2154)GAA>AAA	p.E718K	KIF6_uc003oos.2_Missense_Mutation_p.E169K|KIF6_uc010jwz.1_Missense_Mutation_p.E93K|KIF6_uc010jxa.1_Missense_Mutation_p.E509K|KIF6_uc011dua.1_Missense_Mutation_p.E701K|KIF6_uc010jxb.1_Missense_Mutation_p.E662K	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	718					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TGGGACCATTCATGCTGGGAG	0.473000													48	129					0	0	0.000781405	0	0
LRFN2	57497	broad.mit.edu	37	6	40400120	40400120	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:40400120G>A	uc003oph.1	-	2	1198	c.733C>T	c.(733-735)CAC>TAC	p.H245Y		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	245	LRRCT.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CAATTGCAGTGAAGTGGGTTA	0.607000													16	52					0	0	0.000422831	0	0
LRFN2	57497	broad.mit.edu	37	6	40400383	40400383	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:40400383G>A	uc003oph.1	-	2	935	c.470C>T	c.(469-471)TCC>TTC	p.S157F		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	157	LRR 5.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					GTTGTTGTAGGAGAGGTCCAG	0.582000													23	54					0	0	0.000375601	0	0
TSPO2	222642	broad.mit.edu	37	6	41011867	41011867	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:41011867G>A	uc003opj.2	+	4	805	c.504G>A	c.(502-504)AAG>AAA	p.K168K	UNC5CL_uc010jxe.1_Intron|TSPO2_uc003opk.2_Missense_Mutation_p.E131K|TSPO2_uc011dub.1_Silent_p.K168K	NM_001010873	NP_001010873	Q5TGU0	TSPO2_HUMAN	benzodiazapine receptor (peripheral)-like 1	168					transport	endoplasmic reticulum membrane|integral to membrane	cholesterol binding|receptor activity				0						CCACGGAGAAGAGTGACTGAG	0.627000													8	42					0	0	0.000442599	0	0
TRERF1	55809	broad.mit.edu	37	6	42211038	42211038	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:42211038C>T	uc003osd.2	-	15	3370	c.2807G>A	c.(2806-2808)CGG>CAG	p.R936Q	TRERF1_uc011duq.1_Missense_Mutation_p.R853Q|TRERF1_uc003osb.2_Missense_Mutation_p.R692Q|TRERF1_uc003osc.2_Missense_Mutation_p.R692Q|TRERF1_uc003ose.2_Missense_Mutation_p.R956Q	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	936	SANT.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCGCCCCAGCCGCATGATCTT	0.557000													32	171					0	0	0.00058488	0	0
CLIC5	53405	broad.mit.edu	37	6	45922904	45922904	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:45922904G>A	uc003oxv.3	-	2	724	c.618C>T	c.(616-618)GTC>GTT	p.V206V	CLIC5_uc003oxu.3_Silent_p.V47V|CLIC5_uc003oxx.2_Silent_p.V47V	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	206	Helical; Note=After insertion into the membrane; (Potential).				female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						CATTGAACACGACTCCTTTCA	0.478000													22	103					0	0	0.000375601	0	0
PLA2G7	7941	broad.mit.edu	37	6	46682216	46682216	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:46682216G>A	uc010jzf.2	-	5	720	c.451C>T	c.(451-453)CAT>TAT	p.H151Y	PLA2G7_uc010jzg.1_Missense_Mutation_p.H151Y|PLA2G7_uc011dwd.1_Missense_Mutation_p.H106Y|PLA2G7_uc011dwe.1_Missense_Mutation_p.H24Y	NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	151					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			CCAAGACCATGAGAAAAAACA	0.373000													52	146					0	0	0.000781405	0	0
GPR116	221395	broad.mit.edu	37	6	46849309	46849309	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:46849309C>T	uc003oyo.3	-	8	986	c.697G>A	c.(697-699)GAA>AAA	p.E233K	GPR116_uc003oyp.3_Missense_Mutation_p.E233K|GPR116_uc003oyq.3_Missense_Mutation_p.E233K|GPR116_uc010jzi.1_5'Flank|GPR116_uc003oyr.2_Missense_Mutation_p.E233K	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	233	SEA.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTCTTGACTTCATATGTCACA	0.398000													17	83					0	0	0.00074312	0	0
GPR115	221393	broad.mit.edu	37	6	47682334	47682334	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:47682334G>A	uc003oza.1	+	6	1611	c.1353G>A	c.(1351-1353)CTG>CTA	p.L451L	GPR115_uc003oyz.1_Silent_p.L508L|GPR115_uc003ozb.1_Silent_p.L449L	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	451	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TGTCCCTTCTGACTGCCAATG	0.463000													44	220					0	0	0.000374591	0	0
MCM3	4172	broad.mit.edu	37	6	52144314	52144315	+	Missense_Mutation	DNP	CG	AT	AT	rs149698570		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:52144314_52144315CG>AT	uc003pan.1	-	5	724_725	c.614_615CG>AT	c.(613-615)CCG>CAT	p.P205H	MCM3_uc011dwu.1_Missense_Mutation_p.P159H	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	205					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					GGGCCTTCTCCGGCATCTCCTG	0.554000													7	203					0	0	6.4e-05	0	0
ME1	4199	broad.mit.edu	37	6	84108148	84108148	+	Silent	SNP	A	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:84108148A>T	uc003pjy.2	-	3	406	c.300T>A	c.(298-300)ATT>ATA	p.I100I	ME1_uc011dzb.1_Silent_p.I25I|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	100					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	GAGTATAAACAATAGGCATGA	0.358000													19	34					0	0	0.000132079	0	0
HTR1E	3354	broad.mit.edu	37	6	87725904	87725904	+	Silent	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:87725904C>A	uc003pli.2	+	2	1555	c.852C>A	c.(850-852)ACC>ACA	p.T284T		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	284	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	TCTCTAGCACCAGGGAACGGA	0.507000													38	59					6.5261e-18	6.87367e-17	0.000374591	1	0
MCHR2	84539	broad.mit.edu	37	6	100368841	100368841	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:100368841C>T	uc003pqh.1	-	6	1313	c.998G>A	c.(997-999)GGA>GAA	p.G333E	MCHR2_uc003pqi.1_Missense_Mutation_p.G333E	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	333	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		CAGAGTGTTTCCCATATTGTT	0.408000													31	71					0	0	0.000409698	0	0
LAMA2	3908	broad.mit.edu	37	6	129636653	129636653	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:129636653C>T	uc003qbn.2	+	25	3693	c.3588C>T	c.(3586-3588)CCC>CCT	p.P1196P	LAMA2_uc003qbo.2_Silent_p.P1196P	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1196	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CCATTCTACCCCTGGTAGATG	0.463000													27	42					0	0	0.000147802	0	0
CITED2	10370	broad.mit.edu	37	6	139695073	139695073	+	Silent	SNP	G	A	A	rs148956290		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:139695073G>A	uc003qip.1	-	2	253	c.9C>T	c.(7-9)GAC>GAT	p.D3D		NM_006079	NP_006070	Q99967	CITE2_HUMAN	Cbp/p300-interacting transactivator, with	3					adrenal cortex formation|anti-apoptosis|cell proliferation|determination of left/right symmetry|heart development|liver development|negative regulation of cell migration|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell cycle|positive regulation of cell-cell adhesion|positive regulation of male gonad development|positive regulation of peroxisome proliferator activated receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of organ formation|response to estrogen stimulus|response to fluid shear stress|response to hypoxia|sex determination	cytoplasm|nuclear chromatin|nucleus	chromatin binding|LBD domain binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity				0	Breast(32;0.226)			GBM - Glioblastoma multiforme(68;0.000171)|OV - Ovarian serous cystadenocarcinoma(155;0.00134)		CCATCATATGGTCTGCCATTT	0.637000													5	6					0	0	0.000602214	0	0
C6orf97	80129	broad.mit.edu	37	6	151869443	151869443	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr6:151869443G>A	uc003qol.2	+	5	682	c.593G>A	c.(592-594)AGA>AAA	p.R198K		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	198	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CTTCAGCTTAGAGACCTGCGC	0.343000													13	18					0	0	0.00074312	0	0
RAC1	5879	broad.mit.edu	37	7	6426892	6426892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:6426892C>T	uc003spx.2	+	2	326	c.85C>T	c.(85-87)CCT>TCT	p.P29S	RAC1_uc003spw.2_Missense_Mutation_p.P29S	NM_006908	NP_008839	P63000	RAC1_HUMAN	ras-related C3 botulinum toxin substrate 1	29					actin filament polymerization|apoptosis|axon guidance|cell motility|cell-matrix adhesion|induction of apoptosis by extracellular signals|inflammatory response|lamellipodium assembly|localization within membrane|negative regulation of interleukin-23 production|negative regulation of receptor-mediated endocytosis|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of lamellipodium assembly|positive regulation of Rho protein signal transduction|regulation of cell migration|regulation of defense response to virus by virus|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|ruffle organization|small GTPase mediated signal transduction|T cell costimulation|viral reproduction	cytosol|melanosome|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity|thioesterase binding			lung(2)	2		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.104)	Pravastatin(DB00175)|Simvastatin(DB00641)	CAATGCATTTCCTGGAGAATA	0.353000													40	71					0	0	0.000589545	0	0
MRPL32	64983	broad.mit.edu	37	7	42974677	42974677	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:42974677G>A	uc003tia.2	+	2	301	c.254G>A	c.(253-255)CGC>CAC	p.R85H	C7orf25_uc010kxr.2_5'Flank|PSMA2_uc003thy.2_5'Flank|PSMA2_uc010kxt.2_5'Flank|PSMA2_uc003thz.1_5'Flank|MRPL32_uc003tib.2_RNA|MRPL32_uc003tic.2_Missense_Mutation_p.R32H	NM_031903	NP_114109	Q9BYC8	RM32_HUMAN	mitochondrial ribosomal protein L32 precursor	85					translation	large ribosomal subunit|mitochondrial ribosome	structural constituent of ribosome				0						AAAAATAGACGCACCATTGAA	0.423000													12	35					0	0	0.000308642	0	0
TNS3	64759	broad.mit.edu	37	7	47454806	47454806	+	Splice_Site	SNP	T	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:47454806T>C	uc003tnv.2	-	11	841	c.474_splice	c.e11-1	p.R158_splice	TNS3_uc003tnw.2_Splice_Site_p.R158_splice|TNS3_uc010kyo.1_Splice_Site_p.R158_splice	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3							focal adhesion	protein binding			ovary(4)	4						TGAACATACCTGCAAAACGGA	0.537000													4	7					0	0	0.000602214	0	0
PKD1L1	168507	broad.mit.edu	37	7	47854965	47854965	+	Silent	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:47854965T>A	uc003tny.1	-	47	7056	c.7056A>T	c.(7054-7056)GGA>GGT	p.G2352G	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Silent_p.G79G	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2352	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACGGGGTGCCTCCCGGGTACA	0.552000													13	32					0	0	0.000219431	0	0
ABCA13	154664	broad.mit.edu	37	7	48391796	48391796	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:48391796C>T	uc003toq.2	+	31	10425	c.10400C>T	c.(10399-10401)TCC>TTC	p.S3467F	ABCA13_uc010kys.1_Missense_Mutation_p.S541F|ABCA13_uc003tos.1_Missense_Mutation_p.S293F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3467					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTCAGCAATTCCTTATTCGAC	0.463000													36	59					0	0	0.000953801	0	0
PCLO	27445	broad.mit.edu	37	7	82584171	82584171	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:82584171G>A	uc003uhx.2	-	5	6387	c.6098C>T	c.(6097-6099)TCT>TTT	p.S2033F	PCLO_uc003uhv.2_Missense_Mutation_p.S2033F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1964					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGATAAAAGAGCTTGAAAC	0.388000													24	37					0	0	0.000295444	0	0
PCLO	27445	broad.mit.edu	37	7	82585696	82585696	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:82585696G>A	uc003uhx.2	-	5	4862	c.4573C>T	c.(4573-4575)CCA>TCA	p.P1525S	PCLO_uc003uhv.2_Missense_Mutation_p.P1525S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1456					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTCTTTGTGGAACAGGTGAG	0.413000													27	39					0	0	0.000720815	0	0
SEMA3A	10371	broad.mit.edu	37	7	83634760	83634760	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:83634760G>A	uc003uhz.2	-	11	1570	c.1255C>T	c.(1255-1257)CGC>TGC	p.R419C		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	419	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						ACTATTGGGCGATTGTTCATA	0.388000													30	47					0	0	0.000279167	0	0
GRM3	2913	broad.mit.edu	37	7	86468433	86468433	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:86468433G>A	uc003uid.2	+	4	2702	c.1603G>A	c.(1603-1605)GAA>AAA	p.E535K	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.E407K|GRM3_uc010leh.2_Missense_Mutation_p.E127K	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	535	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CATCCCCTGTGAACCCTACGA	0.532000													39	39					0	0	0.000781405	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86539312	86539312	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:86539312C>T	uc011kha.1	-	16	2360	c.2175G>A	c.(2173-2175)AAG>AAA	p.K725K	KIAA1324L_uc003uif.1_Silent_p.K485K|KIAA1324L_uc011kgz.1_Silent_p.K611K|KIAA1324L_uc003uie.2_Silent_p.K558K	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	725	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GAGCCATCTTCTTCCCCTAGG	0.363000													13	14					0	0	0.000151284	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764870	92764870	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:92764870C>T	uc003umh.1	-	5	1631	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SAMD9L_uc003umj.1_Missense_Mutation_p.E139K|SAMD9L_uc003umi.1_Missense_Mutation_p.E139K|SAMD9L_uc010lfb.1_Missense_Mutation_p.E139K|SAMD9L_uc003umk.1_Missense_Mutation_p.E139K|SAMD9L_uc010lfc.1_Missense_Mutation_p.E139K|SAMD9L_uc010lfd.1_Missense_Mutation_p.E139K|SAMD9L_uc011khx.1_Missense_Mutation_p.E130K	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	139										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AACACATTTTCTTTCATAAGA	0.323000													33	41					0	0	0.000409698	0	0
AZGP1	563	broad.mit.edu	37	7	99565926	99565926	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:99565926G>A	uc003ush.2	-	3	509	c.465C>T	c.(463-465)GTC>GTT	p.V155V		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	155					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GGTCGAAGGGGACCCAGGCTG	0.517000													36	72					0	0	0.000953801	0	0
PRKAR2B	5577	broad.mit.edu	37	7	106786820	106786820	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:106786820G>A	uc003vdx.2	+	6	830	c.655G>A	c.(655-657)GGG>AGG	p.G219R		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	219	cAMP 1.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						TGATAATCGTGGGAGTTTCGG	0.423000													19	46					0	0	0.000175454	0	0
MET	4233	broad.mit.edu	37	7	116380017	116380017	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:116380017G>A	uc003vij.2	+	4	1593	c.1406G>A	c.(1405-1407)CGA>CAA	p.R469Q	MET_uc010lkh.2_Missense_Mutation_p.R469Q|MET_uc011knc.1_Missense_Mutation_p.R469Q|MET_uc011knd.1_Missense_Mutation_p.R469Q|MET_uc011kne.1_Missense_Mutation_p.R469Q|MET_uc011knf.1_Missense_Mutation_p.R469Q|MET_uc011kng.1_Missense_Mutation_p.R469Q|MET_uc011knh.1_Missense_Mutation_p.R469Q|MET_uc011kni.1_Missense_Mutation_p.R469Q|MET_uc011knj.1_Missense_Mutation_p.R39Q|MET_uc011kna.1_Missense_Mutation_p.R469Q|MET_uc011knb.1_Missense_Mutation_p.R469Q	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	469	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GTGGTTTCTCGATCAGGACCA	0.378000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				53	94					0	0	0.000781405	0	0
CFTR	1080	broad.mit.edu	37	7	117282597	117282597	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:117282597G>A	uc003vjd.2	+	23	3955	c.3823G>A	c.(3823-3825)GAT>AAT	p.D1275N	CFTR_uc011knq.1_Missense_Mutation_p.D681N	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1275	Cytoplasmic (Potential).|ABC transporter 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TGTGTCTTGGGATTCAATAAC	0.403000									Cystic_Fibrosis				17	29					0	0	0.00074312	0	0
IQUB	154865	broad.mit.edu	37	7	123092935	123092935	+	Silent	SNP	G	A	A	rs141358866		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:123092935G>A	uc003vkn.2	-	13	2815	c.2238C>T	c.(2236-2238)ATC>ATT	p.I746I	IQUB_uc011kny.1_Silent_p.I79I|IQUB_uc003vko.2_Silent_p.I746I|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	746										ovary(3)|large_intestine(1)	4						TCTTAGCCAGGATATGTTTGT	0.343000													13	16					0	0	0.000219431	0	0
SPAM1	6677	broad.mit.edu	37	7	123593738	123593738	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:123593738C>T	uc003vld.2	+	4	516	c.114C>T	c.(112-114)TTC>TTT	p.F38F	SPAM1_uc003vle.2_Silent_p.F38F|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.F38F|SPAM1_uc010lku.2_Silent_p.F38F	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	38					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CTCTGAATTTCAGAGCACCTC	0.413000													21	31					0	0	0.000375601	0	0
POT1	25913	broad.mit.edu	37	7	124493162	124493162	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:124493162G>A	uc003vlm.2	-	10	1334	c.733C>T	c.(733-735)CAT>TAT	p.H245Y	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.H114Y|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	245					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AGTTTGGTATGAAGGCTATAG	0.313000													27	25					0	0	0.000184323	0	0
PLXNA4	91584	broad.mit.edu	37	7	131908385	131908385	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:131908385C>T	uc003vra.3	-	9	2227	c.1998G>A	c.(1996-1998)GTG>GTA	p.V666V		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	666	PSI 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ATGGACTCTCCACGCAGGACA	0.577000													9	12					0	0	0.000274275	0	0
DGKI	9162	broad.mit.edu	37	7	137339507	137339507	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:137339507G>A	uc003vtt.2	-	5	710	c.709C>T	c.(709-711)CGA>TGA	p.R237*	DGKI_uc003vtu.2_5'UTR	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	237					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CCTCCTTCTCGAAATGTTGGT	0.318000													21	34					0	0	0.00047179	0	0
PRSS1	5644	broad.mit.edu	37	7	142459722	142459722	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:142459722G>A	uc003wak.2	+	3	315	c.298G>A	c.(298-300)GAC>AAC	p.D100N	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Missense_Mutation_p.D40N	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	100	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			CCCCCAATACGACAGGAAGAC	0.552000									Hereditary_Pancreatitis				49	66					0	0	0.000781405	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080748	148080748	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:148080748G>A	uc003weu.1	+	22	3999	c.3483G>A	c.(3481-3483)GGG>GGA	p.G1161G	CNTNAP2_uc003wev.1_5'UTR	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1161	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TAGAAACAGGGAAAATTGACC	0.433000										HNSCC(39;0.1)			17	33					0	0	0.00074312	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327224	150327224	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:150327224C>T	uc003whn.2	-	2	431	c.7G>A	c.(7-9)GAA>AAA	p.E3K	GIMAP6_uc003whm.2_5'UTR	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	3							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TATTCTTCTTCCTCCATCTAC	0.428000													22	28					0	0	0.000229342	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389819	150389819	+	Missense_Mutation	SNP	G	A	A	rs35516375		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:150389819G>A	uc003who.2	+	3	533	c.445G>A	c.(445-447)GAA>AAA	p.E149K	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	149	GTP (Potential).					integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TACCCACAAGGAAGACCTCAA	0.537000													14	21					0	0	0.000308642	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931051	157931051	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:157931051G>A	uc003wno.2	-	7	1188	c.1067C>T	c.(1066-1068)GCC>GTC	p.A356V	PTPRN2_uc003wnp.2_Missense_Mutation_p.A339V|PTPRN2_uc003wnq.2_Missense_Mutation_p.A356V|PTPRN2_uc003wnr.2_Missense_Mutation_p.A318V|PTPRN2_uc011kwa.1_Missense_Mutation_p.A379V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	356	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCTCCCAGGGCCGCTCTCCC	0.672000													21	24					0	0	0.000229342	0	0
MYOM2	9172	broad.mit.edu	37	8	2037889	2037889	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:2037889C>T	uc003wpx.3	+	15	1841	c.1703C>T	c.(1702-1704)CCG>CTG	p.P568L	MYOM2_uc011kwi.1_5'UTR	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	568	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GTGAGATCCCCGAGATATGCC	0.562000													26	29					0	0	0.000878237	0	0
CSMD1	64478	broad.mit.edu	37	8	3141781	3141781	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:3141781C>T	uc011kwk.1	-	26	4431	c.4041G>A	c.(4039-4041)AAG>AAA	p.K1347K	CSMD1_uc011kwj.1_Silent_p.K739K|CSMD1_uc003wqe.2_Silent_p.K503K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1347	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACTCCACTCCTTCAGCAGGA	0.557000											OREG0018505	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	20					0	0	0.00074312	0	0
SGK223	157285	broad.mit.edu	37	8	8185915	8185915	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:8185915G>A	uc003wsh.3	-	4	2377	c.2377C>T	c.(2377-2379)CCG>TCG	p.P793S		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	793							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GAAGGAAACGGAACGGGAGCA	0.607000													16	18					0	0	0.000308642	0	0
RP1L1	94137	broad.mit.edu	37	8	10470663	10470663	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:10470663C>T	uc003wtc.2	-	4	1174	c.945G>A	c.(943-945)ATG>ATA	p.M315I		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	315					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CGTCCTCATTCATGCGGACCT	0.672000													38	64					0	0	0.000814825	0	0
FAM160B2	64760	broad.mit.edu	37	8	21959320	21959320	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:21959320C>T	uc011kyx.1	+	14	1860	c.1809C>T	c.(1807-1809)TTC>TTT	p.F603F	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	603											0						AGGGCCACTTCCTCCGAGTGC	0.642000													9	12					0	0	0.000274275	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256521	24256521	+	Silent	SNP	G	A	A	rs141164035		TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:24256521G>A	uc003xdz.2	+	9	1117	c.897G>A	c.(895-897)GGG>GGA	p.G299G	ADAMDEC1_uc010lub.2_Silent_p.G220G|ADAMDEC1_uc011lab.1_Silent_p.G220G	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	299	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding	p.G299G(1)		skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CTAACCTGGGGAAAAAGATCC	0.512000													12	26					0	0	0.00010058	0	0
IDO1	3620	broad.mit.edu	37	8	39782753	39782753	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:39782753A>G	uc003xnm.2	+	9	833	c.719A>G	c.(718-720)AAC>AGC	p.N240S	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	240					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TGGAAAGGCAACCCCCAGCTA	0.448000													6	20					0	0	3.59834e-05	0	0
VDAC3	7419	broad.mit.edu	37	8	42259489	42259489	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:42259489C>T	uc011lct.1	+	7	650	c.507C>T	c.(505-507)TTC>TTT	p.F169F	VDAC3_uc010lxk.2_3'UTR|VDAC3_uc003xpc.2_Silent_p.F170F	NM_005662	NP_005653	Q9Y277	VDAC3_HUMAN	voltage-dependent anion channel 3 isoform b	169	Beta stranded; (By similarity).				adenine transport	mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			upper_aerodigestive_tract(1)	1	all_cancers(6;3.86e-23)|all_lung(13;6.47e-12)|Lung NSC(13;1.08e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00266)|Lung(22;0.00849)|LUSC - Lung squamous cell carcinoma(45;0.024)		Dihydroxyaluminium(DB01375)	AGAATAATTTCGCCCTGGGTT	0.463000													18	26					0	0	0.00074312	0	0
SNTG1	54212	broad.mit.edu	37	8	51362269	51362269	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:51362269C>T	uc010lxy.1	+	7	632	c.261C>T	c.(259-261)ATC>ATT	p.I87I	SNTG1_uc003xqs.1_Silent_p.I87I|SNTG1_uc010lxz.1_Silent_p.I87I|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	87	PDZ.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TTTCAAAAATCTCCAAGGAAC	0.318000													47	21					0	0	0.000781405	0	0
ST18	9705	broad.mit.edu	37	8	53077739	53077739	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:53077739G>C	uc003xqz.2	-	7	1407	c.1251C>G	c.(1249-1251)TGC>TGG	p.C417W	ST18_uc011ldq.1_Missense_Mutation_p.C64W|ST18_uc011ldr.1_Missense_Mutation_p.C382W|ST18_uc011lds.1_Missense_Mutation_p.C322W|ST18_uc003xra.2_Missense_Mutation_p.C417W|ST18_uc003xrb.2_Missense_Mutation_p.C417W	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	417	C2HC-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CCCTTCCTGTGCATCCCGGCG	0.403000													4	402					0	0	3.59834e-05	0	0
OPRK1	4986	broad.mit.edu	37	8	54147561	54147561	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:54147561G>A	uc003xrh.1	-	2	743	c.368C>T	c.(367-369)TCC>TTC	p.S123F	OPRK1_uc003xri.1_Missense_Mutation_p.S123F|OPRK1_uc010lyc.1_Missense_Mutation_p.S34F	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	123	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AAAAGGCCAGGAATTCATCAA	0.433000													34	112					0	0	0.000692331	0	0
FAM110B	90362	broad.mit.edu	37	8	59059756	59059756	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:59059756G>A	uc003xtj.1	+	5	1847	c.967G>A	c.(967-969)GAC>AAC	p.D323N		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	323						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				ACAGTCTCAGGACAGTAACAG	0.448000													46	36					0	0	0.000781405	0	0
TOX	9760	broad.mit.edu	37	8	59852006	59852006	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:59852006A>G	uc003xtw.1	-	3	487	c.266T>C	c.(265-267)GTT>GCT	p.V89A		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	89						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				ACCAGACTCAACTTCATTCAG	0.493000													13	130					0	0	0.000219431	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70585185	70585186	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:70585185_70585186CG>AT	uc003xyl.2	-	10	3172_3173	c.2465_2466CG>AT	c.(2464-2466)CCG>CAT	p.P822H	SLCO5A1_uc010lzb.2_Missense_Mutation_p.P767H|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	822						integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GGAAGGGCCCCGGGTAGGTCTG	0.584000													9	255					0	0	6.4e-05	0	0
TRAM1	23471	broad.mit.edu	37	8	71495998	71495998	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:71495998C>A	uc003xyo.1	-	9	947	c.777G>T	c.(775-777)TTG>TTT	p.L259F	TRAM1_uc011lfc.1_Missense_Mutation_p.L228F	NM_014294	NP_055109	Q15629	TRAM1_HUMAN	translocation associated membrane protein 1	259	Helical; (Potential).|TLC.				cotranslational protein targeting to membrane|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity			ovary(1)	1			Epithelial(68;0.00679)|all cancers(69;0.0324)|OV - Ovarian serous cystadenocarcinoma(28;0.0509)			GAAGTCTTCCCAAAACAAAAA	0.368000													13	531					0.000308642	0.00319358	0.000308642	1	0
EYA1	2138	broad.mit.edu	37	8	72229826	72229827	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:72229826_72229827GG>TT	uc003xys.3	-	6	803_804	c.516_517CC>AA	c.(514-519)ACCCCT>ACAACT	p.P173T	EYA1_uc003xyr.3_Missense_Mutation_p.P168T|EYA1_uc003xyt.3_Missense_Mutation_p.P140T|EYA1_uc010lzf.2_Missense_Mutation_p.P100T|EYA1_uc003xyu.2_Missense_Mutation_p.P173T|EYA1_uc011lfe.1_Missense_Mutation_p.P167T|EYA1_uc003xyv.2_Missense_Mutation_p.P51T	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	173					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CCAGGTTGAGGGGTACTGAAGC	0.460000													16	553					0	0	6.4e-05	0	0
TRPA1	8989	broad.mit.edu	37	8	72973898	72973898	+	Silent	SNP	A	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:72973898A>C	uc003xza.2	-	7	1081	c.906T>G	c.(904-906)GTT>GTG	p.V302V		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	302	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	CGGTTGTGTTAACAATATCCA	0.423000													4	306					0	0	0.000602214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618670	77618670	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:77618670C>T	uc003yav.2	+	2	2734	c.2347C>T	c.(2347-2349)CGA>TGA	p.R783*	ZFHX4_uc003yat.1_Nonsense_Mutation_p.R783*|ZFHX4_uc003yau.1_Nonsense_Mutation_p.R783*|ZFHX4_uc003yaw.1_Nonsense_Mutation_p.R783*	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	783	C2H2-type 4; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGGAACCTCCGAATTCATAT	0.512000										HNSCC(33;0.089)			30	51					0	0	0.000339439	0	0
CCNE2	9134	broad.mit.edu	37	8	95906295	95906295	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:95906295G>T	uc003yhc.2	-	3	176	c.67C>A	c.(67-69)CAA>AAA	p.Q23K	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.Q23K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	23					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TGGGCTTCTTGGGGGGATTCC	0.458000													15	733					0.000229342	0.00238066	0.000229342	1	0
PLEKHF2	79666	broad.mit.edu	37	8	96166912	96166913	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:96166912_96166913GG>TT	uc003yhn.1	+	2	887_888	c.640_641GG>TT	c.(640-642)GGG>TTG	p.G214L		NM_024613	NP_078889	Q9H8W4	PKHF2_HUMAN	phafin 2	214						transport vesicle	metal ion binding|protein binding			ovary(2)	2	Breast(36;3.18e-05)					GCTTTCTGCTGGGGACATGGCC	0.480000													15	702					0	0	6.4e-05	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110476827	110476827	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:110476827A>G	uc003yne.2	+	49	7870	c.7766A>G	c.(7765-7767)AAC>AGC	p.N2589S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2589	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TACCGGATGAACAACCACCCT	0.463000										HNSCC(38;0.096)			47	12					0	0	0.000781405	0	0
COL14A1	7373	broad.mit.edu	37	8	121238909	121238909	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:121238909G>A	uc003yox.2	+	16	2173	c.1908G>A	c.(1906-1908)ACG>ACA	p.T636T	COL14A1_uc003yoy.2_Silent_p.T314T	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	636	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATGAGGTGACGACAGACAGTT	0.478000													19	33					0	0	0.000958276	0	0
WDR67	93594	broad.mit.edu	37	8	124138427	124138427	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:124138427C>A	uc003ypp.1	+	12	1792	c.1702C>A	c.(1702-1704)CAG>AAG	p.Q568K	WDR67_uc011lig.1_Missense_Mutation_p.Q568K|WDR67_uc011lih.1_Missense_Mutation_p.Q458K|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Missense_Mutation_p.Q281K|WDR67_uc003ypt.1_Missense_Mutation_p.Q25K|WDR67_uc003ypu.1_Missense_Mutation_p.Q25K	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	568	Rab-GAP TBC.					centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			TATAACCTCCCAGGTAAGAAG	0.333000													8	159					0.000442599	0.00457235	0.000442599	1	0
BAI1	575	broad.mit.edu	37	8	143599604	143599604	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:143599604T>G	uc003ywm.2	+	18	3104	c.2921_splice	c.e18+2	p.R974_splice		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1						axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CGTGTGGAGGTGGGTGCCGCC	0.647000													13	39					0	0	0.000229342	0	0
ZNF623	9831	broad.mit.edu	37	8	144733649	144733649	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr8:144733649T>A	uc003yzd.2	+	1	1696	c.1607T>A	c.(1606-1608)TTA>TAA	p.L536*	ZNF623_uc011lkp.1_Nonsense_Mutation_p.L496*|ZNF623_uc003yzc.2_Nonsense_Mutation_p.L496*	NM_014789	NP_055604	O75123	ZN623_HUMAN	zinc finger protein 623 isoform 1	536					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;5.28e-40)|all cancers(56;5.23e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			ACAGGTAACTTATAAAATAAT	0.413000													44	7					0	0	0.000781405	0	0
GLIS3	169792	broad.mit.edu	37	9	4286122	4286122	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:4286122G>A	uc003zhx.1	-	2	1017	c.304C>T	c.(304-306)CAG>TAG	p.Q102*	GLIS3_uc003zic.1_Nonsense_Mutation_p.Q102*|GLIS3_uc003zie.1_Nonsense_Mutation_p.Q102*|GLIS3_uc010mhh.1_Intron|GLIS3_uc003zid.1_5'UTR|GLIS3_uc010mhi.1_Intron|GLIS3_uc003zif.1_5'UTR|GLIS3_uc003zig.1_Intron|GLIS3_uc003zih.1_Intron|GLIS3_uc003zii.1_Nonsense_Mutation_p.Q102*	NM_001042413	NP_001035878	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		CCTCCAGCCTGGGTGACCTGG	0.537000													27	45					0	0	0.000147802	0	0
TLN1	7094	broad.mit.edu	37	9	35711303	35711303	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:35711303G>A	uc003zxt.2	-	30	4322	c.3968C>T	c.(3967-3969)TCC>TTC	p.S1323F		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1323					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			AGGGTCCGTGGACAGGGCCTT	0.572000													14	33					0	0	0.000219431	0	0
GNE	10020	broad.mit.edu	37	9	36222930	36222930	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:36222930G>T	uc010mlh.2	-	9	1692	c.1477C>A	c.(1477-1479)CAA>AAA	p.Q493K	CLTA_uc003zzf.1_Intron|GNE_uc010mlg.2_Intron|GNE_uc011lpl.1_Missense_Mutation_p.Q383K|GNE_uc010mli.2_Missense_Mutation_p.Q524K|GNE_uc010mlj.2_Missense_Mutation_p.Q488K	NM_005476	NP_005467	Q9Y223	GLCNE_HUMAN	UDP-N-acetylglucosamine-2-epimerase/N-	493	UDP-N-acetylglucosamine 2-epimerase.|N-acetylmannosamine kinase.				cell adhesion|lipopolysaccharide biosynthetic process|N-acetylneuraminate metabolic process|UDP-N-acetylglucosamine metabolic process		ATP binding|N-acylmannosamine kinase activity|UDP-N-acetylglucosamine 2-epimerase activity				0			STAD - Stomach adenocarcinoma(86;0.228)			TTCCACTCTTGGATCAGTTTG	0.517000													7	110					2.17888e-05	0.000227638	0.000442599	1	0
APBA1	320	broad.mit.edu	37	9	72064641	72064641	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:72064641G>A	uc004ahh.2	-	10	2316	c.2040C>T	c.(2038-2040)CTC>CTT	p.L680L		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	680	PDZ 1.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						TCACGGTGGGGAGGATGGATC	0.488000													45	42					0	0	0.000781405	0	0
CEP78	84131	broad.mit.edu	37	9	80879234	80879234	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:80879234T>G	uc004akx.2	+	13	1901	c.1625_splice	c.e13+2	p.G542_splice	CEP78_uc004aky.3_Splice_Site_p.G543_splice|CEP78_uc010mpp.2_Splice_Site_p.G543_splice|CEP78_uc004akz.1_Splice_Site_p.G30_splice	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b						G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						AGATGCTGGGTTAGTTACTTT	0.373000													17	23					0	0	0.000229342	0	0
RASEF	158158	broad.mit.edu	37	9	85615844	85615844	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:85615844C>T	uc004amo.1	-	10	1665	c.1404G>A	c.(1402-1404)CAG>CAA	p.Q468Q		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	468					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						CAAAGCTCTCCTGCACCCCGT	0.502000													17	26					0	0	0.000958276	0	0
NOL8	55035	broad.mit.edu	37	9	95077832	95077832	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:95077832G>A	uc004arv.2	-	7	1412	c.1075C>T	c.(1075-1077)CGT>TGT	p.R359C	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.R291C	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	359					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						CAAGAGACACGATTTTTGATA	0.333000													13	26					0	0	0.000308642	0	0
BICD2	23299	broad.mit.edu	37	9	95477665	95477665	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:95477665G>A	uc004aso.1	-	7	2396	c.2339C>T	c.(2338-2340)TCG>TTG	p.S780L	BICD2_uc004asp.1_Missense_Mutation_p.S780L	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	780	Interacts with RAB6A (By similarity).|Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						GCGCAGCAGCGAGTTCAGCGT	0.617000													13	15					0	0	0.000219431	0	0
FBP1	2203	broad.mit.edu	37	9	97369103	97369103	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:97369103G>A	uc004auw.3	-	5	1030	c.699C>T	c.(697-699)TTC>TTT	p.F233F	FBP1_uc010mrl.2_Silent_p.F233F	NM_000507	NP_000498	P09467	F16P1_HUMAN	fructose-1,6-bisphosphatase 1	233					gluconeogenesis	cytosol	fructose 1,6-bisphosphate 1-phosphatase activity|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding|metal ion binding				0		Acute lymphoblastic leukemia(62;0.136)			Adenosine monophosphate(DB00131)	TTACTGGGGGGAACTTCTTCC	0.562000													5	10					0	0	0.000602214	0	0
CTSL2	1515	broad.mit.edu	37	9	99800324	99800324	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:99800324A>C	uc004awt.2	-	2	199	c.2T>G	c.(1-3)ATG>AGG	p.M1R	CTSL2_uc010msi.2_Missense_Mutation_p.M1R|CTSL2_uc004awu.2_5'UTR|CTSL2_uc010msj.1_5'UTR|CTSL2_uc010msk.2_5'UTR	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	1						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CGAAAGATTCATGTTTCAAAA	0.398000													22	36					0	0	0.000375601	0	0
ALG2	85365	broad.mit.edu	37	9	101980476	101980476	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:101980476G>A	uc004azf.2	-	2	1061	c.991C>T	c.(991-993)CCT>TCT	p.P331S	ALG2_uc004azg.2_Missense_Mutation_p.P238S	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	331					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				GCTTCCAGAGGGACAATGCCA	0.507000													14	22					0	0	0.000566183	0	0
OR13C4	138804	broad.mit.edu	37	9	107289149	107289149	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:107289149G>A	uc011lvn.1	-	1	342	c.342C>T	c.(340-342)CTC>CTT	p.L114L		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCATGCCAAGGAGGAAACATT	0.438000													38	52					0	0	0.000319135	0	0
OR13C8	138802	broad.mit.edu	37	9	107332096	107332096	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:107332096C>T	uc011lvo.1	+	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAATTTCCATCTCTTACATAT	0.403000													42	55					0	0	0.000319135	0	0
OR2K2	26248	broad.mit.edu	37	9	114089898	114089898	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:114089898G>A	uc011lwp.1	-	1	816	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_205859	NP_995581	Q8NGT1	OR2K2_HUMAN	olfactory receptor, family 2, subfamily K,	301	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCAACGAGATGATTTTGTCTA	0.408000													17	40					0	0	0.000422831	0	0
ASTN2	23245	broad.mit.edu	37	9	119858420	119858420	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:119858420G>A	uc004bjs.1	-	5	1280	c.1179C>T	c.(1177-1179)AGC>AGT	p.S393S	ASTN2_uc004bjr.1_Silent_p.S393S|ASTN2_uc004bjt.1_Silent_p.S342S	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	393	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CTCTCCCAAAGCTGATTCCTC	0.542000													14	18					0	0	0.000219431	0	0
TLR4	7099	broad.mit.edu	37	9	120475442	120475442	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:120475442C>T	uc004bjz.2	+	3	1327	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S	TLR4_uc004bka.2_Missense_Mutation_p.P306S|TLR4_uc004bkb.2_Missense_Mutation_p.P146S	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	346	LRR 9.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGGACAGTTTCCCACATTGAA	0.358000													34	52					0	0	0.000191422	0	0
PTGS1	5742	broad.mit.edu	37	9	125145866	125145866	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:125145866C>T	uc004bmg.1	+	8	976	c.841C>T	c.(841-843)CAG>TAG	p.Q281*	PTGS1_uc011lys.1_Nonsense_Mutation_p.Q256*|PTGS1_uc010mwb.1_Nonsense_Mutation_p.Q172*|PTGS1_uc004bmf.1_Nonsense_Mutation_p.Q281*|PTGS1_uc004bmh.1_Nonsense_Mutation_p.Q172*|PTGS1_uc011lyt.1_Nonsense_Mutation_p.Q172*	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	281					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CATCCCGCCCCAGAGCCAGAT	0.627000													11	15					0	0	0.00010058	0	0
OR1N2	138882	broad.mit.edu	37	9	125315727	125315727	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:125315727C>T	uc011lyx.1	+	1	279	c.279C>T	c.(277-279)GCC>GCT	p.A93A		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	93	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TCACTTCTGCCTCCATCCCCA	0.483000													68	96					0	0	0.000781405	0	0
OR1L8	138881	broad.mit.edu	37	9	125330004	125330004	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:125330004G>A	uc004bmp.1	-	1	753	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						TTCCATAAAAGAGCGTCACCA	0.463000													10	22					0	0	0.000673444	0	0
OLFML2A	169611	broad.mit.edu	37	9	127566427	127566427	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:127566427G>A	uc004bov.2	+	6	1087	c.974G>A	c.(973-975)GGC>GAC	p.G325D	OLFML2A_uc010mwr.1_Missense_Mutation_p.G289D|OLFML2A_uc004bow.2_Missense_Mutation_p.G111D	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	325											0						AAGGTGGAGGGCAGGTCCAAC	0.627000													20	23					0	0	0.00047179	0	0
WDR38	401551	broad.mit.edu	37	9	127618183	127618183	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:127618183G>A	uc004box.2	+	4	407	c.351G>A	c.(349-351)TCG>TCA	p.S117S	WDR38_uc011lzn.1_Silent_p.S106S|WDR38_uc011lzo.1_Silent_p.S117S|WDR38_uc011lzp.1_Silent_p.S68S	NM_001045476	NP_001038941	Q5JTN6	WDR38_HUMAN	WD repeat domain 38	117	WD 3.										0						GCCCTGACTCGAGACAGCTGG	0.622000											OREG0019485	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	40					0	0	0.000184323	0	0
HSPA5	3309	broad.mit.edu	37	9	128003395	128003395	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:128003395G>A	uc004bpn.2	-	1	267	c.11C>T	c.(10-12)TCC>TTC	p.S4F		NM_005347	NP_005338	P11021	GRP78_HUMAN	heat shock 70kDa protein 5	4					anti-apoptosis|cellular response to glucose starvation|ER-associated protein catabolic process|platelet activation|platelet degranulation|regulation of protein folding in endoplasmic reticulum	cell surface|endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|integral to endoplasmic reticulum membrane|melanosome|midbody|nucleus|perinuclear region of cytoplasm	ATP binding|ATPase activity|calcium ion binding|caspase inhibitor activity|chaperone binding|misfolded protein binding|protein binding, bridging|protein domain specific binding|ubiquitin protein ligase binding|unfolded protein binding			ovary(3)|skin(1)	4					Antihemophilic Factor(DB00025)	GGCCACCAGGGAGAGCTTCAT	0.677000										Prostate(1;0.17)			22	27					0	0	0.000375601	0	0
CRAT	1384	broad.mit.edu	37	9	131860614	131860614	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:131860614G>A	uc004bxh.2	-	10	1524	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	CRAT_uc004bxg.2_Silent_p.F393F|CRAT_uc004bxk.3_Silent_p.F393F	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	414					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	CAAAATGGTGGAACACCATCA	0.597000													26	35					0	0	0.000339439	0	0
BAT2L1	84726	broad.mit.edu	37	9	134350603	134350603	+	Silent	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:134350603C>T	uc004can.3	+	15	3142	c.3087C>T	c.(3085-3087)GCC>GCT	p.A1029A	BAT2L1_uc010mzj.1_Silent_p.A612A|BAT2L1_uc004cao.3_Silent_p.A387A	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1029							protein binding				0						CTGACAAGGCCTGGGAAGCCA	0.552000													10	15					0	0	0.00010058	0	0
EGFL6	25975	broad.mit.edu	37	X	13624543	13624543	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:13624543G>A	uc004cvi.2	+	6	806	c.566G>A	c.(565-567)CGA>CAA	p.R189Q	EGFL6_uc004cvj.2_Missense_Mutation_p.R189Q|EGFL6_uc011mik.1_Missense_Mutation_p.R90Q	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	189	EGF-like 4; calcium-binding (Potential).				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						CCCTACAATCGAAGATGTGTG	0.398000													52	13					0	0	0.000781405	0	0
SYTL5	94122	broad.mit.edu	37	X	37893255	37893255	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:37893255G>A	uc004ddu.2	+	3	647	c.113G>A	c.(112-114)AGA>AAA	p.R38K	SYTL5_uc004ddv.2_Missense_Mutation_p.R38K|SYTL5_uc004ddx.2_Missense_Mutation_p.R38K	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	38	RabBD.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						GAGGACAAGAGAATAAGGTAG	0.363000													17	3					0	0	0.000958276	0	0
OTUD6A	139562	broad.mit.edu	37	X	69283210	69283210	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:69283210C>T	uc004dxu.1	+	1	870	c.836C>T	c.(835-837)GCC>GTC	p.A279V		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	279										lung(1)|skin(1)	2						GAGGCCGGCGCCGCCGGGGGC	0.657000													5	1					0	0	3.59834e-05	0	0
XIST	7503	broad.mit.edu	37	X	73071002	73071002	+	RNA	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:73071002C>T	uc004ebm.1	-	1		c.1587G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GTCCATCCCACCTTTTCTCCC	0.498000													79	18					0	0	0.000781405	0	0
ATRX	546	broad.mit.edu	37	X	76814187	76814187	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:76814187G>A	uc004ecp.3	-	29	6689	c.6457C>T	c.(6457-6459)CGC>TGC	p.R2153C	ATRX_uc004ecq.3_Missense_Mutation_p.R2115C|ATRX_uc004eco.3_Missense_Mutation_p.R1938C	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2153	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TGTCCAAAGCGATAAACTCTG	0.333000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						56	15					0	0	0.000781405	0	0
COL4A6	1288	broad.mit.edu	37	X	107420087	107420087	+	Silent	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:107420087G>A	uc004enw.3	-	28	2776	c.2673C>T	c.(2671-2673)GCC>GCT	p.A891A	COL4A6_uc004env.3_Silent_p.A890A|COL4A6_uc011msn.1_Silent_p.A890A|COL4A6_uc010npk.2_Silent_p.A890A	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	891	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						GTCCAGAGAGGGCTGGCAACC	0.552000									Alport_syndrome_with_Diffuse_Leiomyomatosis				44	16					0	0	0.000781405	0	0
KIAA1210	57481	broad.mit.edu	37	X	118215449	118215449	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:118215449T>A	uc004era.3	-	14	4973	c.4973A>T	c.(4972-4974)AAG>ATG	p.K1658M		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1658										ovary(4)|skin(1)	5						TTGCAGTATCTTCTGAGCTTC	0.443000													43	7					0	0	0.000781405	0	0
GPR112	139378	broad.mit.edu	37	X	135439873	135439873	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:135439873G>A	uc004ezu.1	+	10	7229	c.6938G>A	c.(6937-6939)AGA>AAA	p.R2313K	GPR112_uc010nsb.1_Missense_Mutation_p.R2108K|GPR112_uc010nsc.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2313	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTGGAACAGAGAGAAGGACAA	0.333000													79	21					0	0	0.000781405	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718157	142718157	+	Silent	SNP	G	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:142718157G>T	uc004fbx.2	-	2	1144	c.768C>A	c.(766-768)ACC>ACA	p.T256T	SLITRK4_uc004fby.2_Silent_p.T256T	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	256	Extracellular (Potential).|LRRCT 1.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTGTTTGTTGGTTTCTTTTA	0.458000													7	36					2.0095e-06	2.10282e-05	8.12818e-05	1	0
SPANXN2	494119	broad.mit.edu	37	X	142795152	142795152	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:142795152C>T	uc004fbz.2	-	2	1280	c.526G>A	c.(526-528)GAG>AAG	p.E176K		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	176										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCCACCCTCCTGTGAAGAT	0.468000													81	25					0	0	0.000781405	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482817	152482817	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:152482817G>A	uc004fhf.2	-	3	414	c.194C>T	c.(193-195)CCC>CTC	p.P65L		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	65						cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GATGGTAGTGGGAAAGGCGGA	0.607000													49	5					0	0	0.000781405	0	0
FRMPD2	143162	broad.mit.edu	37	10	49379224	49379224	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr10:49379224delT	uc001jgi.2	-	26	3358	c.3251delA	c.(3250-3252)AAGfs	p.K1084fs	FRMPD2_uc001jgh.2_Frame_Shift_Del_p.K1052fs|FRMPD2_uc001jgj.2_Frame_Shift_Del_p.K1062fs|FRMPD2L1_uc001jgf.2_Frame_Shift_Del_p.K95fs|FRMPD2_uc001jgg.2_Frame_Shift_Del_p.K36fs|FRMPD2_uc001jgk.2_Frame_Shift_Del_p.K36fs	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1084	PDZ 3.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		ATTGGCATTCTTTTTTAGTTT	0.398													5	1	---	---	---	---					
AHNAK2	113146	broad.mit.edu	37	14	105444534	105444534	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr14:105444534delC	uc010axc.1	-	1	161	c.41delG	c.(40-42)GGAfs	p.G14fs		NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	14						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCGGGGGTTCCGGGCCAGGT	0.801													2	4	---	---	---	---					
IQGAP1	8826	broad.mit.edu	37	15	91019925	91019925	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr15:91019925delA	uc002bpl.1	+	24	2916	c.2815delA	c.(2815-2817)AAAfs	p.K939fs		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	939					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AAAACTTACCAAAAAAAATAA	0.363													7	537	---	---	---	---					
NOVA2	4858	broad.mit.edu	37	19	46476609	46476610	+	Translation_Start_Site	INS	-	G	G			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr19:46476609_46476610insG	uc002pdv.2	-	1						NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2							nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		TCGGGCTCCATGGGGGGGGCCT	0.401													4	7	---	---	---	---					
OR2A1	346528	broad.mit.edu	37	7	143929763	143929763	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr7:143929763delC	uc011kub.1	-	1	174	c.174delG	c.(172-174)ATGfs	p.M58fs		NM_001005287	NP_001005287	Q8NGT9	OR2A1_HUMAN	olfactory receptor, family 2, subfamily A,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.14)					GGAAGAAGTACATGGGGGTGT	0.592													4	2	---	---	---	---					
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	T	T	rs148250832	byFrequency	TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chr9:138715799_138715800insT	uc004cgr.3	-	10	1396_1397	c.1396_1397insA	c.(1396-1398)ACCfs	p.T466fs	CAMSAP1_uc004cgq.3_Frame_Shift_Ins_p.T356fs|CAMSAP1_uc010nbg.2_Frame_Shift_Ins_p.T188fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	466						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.337													3	3	---	---	---	---					
PPP2R3B	28227	broad.mit.edu	37	X	308374	308374	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FS-A1ZP-06A-11D-A197-08	TCGA-FS-A1ZP-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	66d312fc-809d-428b-98e3-a29d211db35c	46ecbb48-9320-47ec-8bd8-4657e1885627	g.chrX:308374delC	uc004cpg.2	-	3	766	c.565delG	c.(565-567)GAGfs	p.E189fs	PPP2R3B_uc011mha.1_Frame_Shift_Del_p.E28fs	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	189					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCCGTGCGCTCCCCGCCGGCG	0.711													2	4	---	---	---	---					
