Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AADACL4	343066	broad.mit.edu	37	1	12726394	12726394	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:12726394C>T	uc001auf.2	+	4	872	c.872C>T	c.(871-873)CCC>CTC	p.P291L		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	291	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GACAACATCCCCAAGAAATTT	0.507000													57	60					0	0	0.014410	0	0
LOC649330	649330	broad.mit.edu	37	1	12907865	12907865	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:12907865C>T	uc009vno.2	-	1	373	c.278G>A	c.(277-279)GGA>GAA	p.G93E	HNRNPCL1_uc010obf.1_Missense_Mutation_p.G93E	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	93							nucleic acid binding|nucleotide binding				0						ACCTGCGTTTCCTCGGTTCAC	0.483000													20	103					0	0	0.014323	0	0
LOC440563	440563	broad.mit.edu	37	1	13183286	13183286	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:13183286G>A	uc010obg.1	-	1	682	c.587C>T	c.(586-588)TCT>TTT	p.S196F		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	196						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TTCCAGGAGAGAATCCACTTT	0.448000													40	268					0	0	0.013114	0	0
LOC440563	440563	broad.mit.edu	37	1	13183469	13183469	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:13183469G>A	uc010obg.1	-	1	499	c.404C>T	c.(403-405)CCC>CTC	p.P135L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	135						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CAGAGCAATGGGAGGAGGAGG	0.512000													18	168					0	0	0.002780	0	0
PRDM2	7799	broad.mit.edu	37	1	14107071	14107071	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:14107071C>T	uc001avi.2	+	8	3637	c.2781C>T	c.(2779-2781)CTC>CTT	p.L927L	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Silent_p.L927L|PRDM2_uc001avj.2_Intron|PRDM2_uc001avk.2_Silent_p.L726L|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	927						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		ATCCTGACCTCGGTCCGGGCT	0.532000													63	74					0	0	0.014410	0	0
ZBTB40	9923	broad.mit.edu	37	1	22850922	22850922	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:22850922C>T	uc001bft.2	+	18	4021	c.3510C>T	c.(3508-3510)GCC>GCT	p.A1170A	ZBTB40_uc001bfu.2_Silent_p.A1170A|ZBTB40_uc009vqi.1_Silent_p.A1058A	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1170					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		AGGCCGCAGCCTCACAGATGG	0.552000													25	26					0	0	0.004656	0	0
LYPLA2	11313	broad.mit.edu	37	1	24119680	24119680	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:24119680T>C	uc001bht.2	+	4	271	c.150T>C	c.(148-150)CCT>CCC	p.P50P	LYPLA2_uc001bhr.2_Silent_p.P45P|LYPLA2_uc001bhs.1_Silent_p.P45P|LYPLA2_uc001bhu.2_Silent_p.P27P	NM_007260	NP_009191	O95372	LYPA2_HUMAN	lysophospholipase II	50					fatty acid metabolic process	cytoplasm	hydrolase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		TCCGGCTCCCTCACGTCAAGT	0.627000													44	23					0	0	0.014410	0	0
TMEM222	84065	broad.mit.edu	37	1	27661924	27661924	+	Silent	SNP	C	T	T	rs114015897	byFrequency	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:27661924C>T	uc001bnr.3	+	6	647	c.594C>T	c.(592-594)ATC>ATT	p.I198I	TMEM222_uc001bns.3_RNA|TMEM222_uc001bnt.3_RNA|TMEM222_uc001bnu.3_RNA	NM_032125	NP_115501	Q9H0R3	TM222_HUMAN	transmembrane protein 222	198	Helical; (Potential).					integral to membrane	protein binding				0						TGGGCATCATCCTCACCGTCA	0.617000													49	54					0	0	0.014410	0	0
SPOCD1	90853	broad.mit.edu	37	1	32280615	32280615	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:32280615A>C	uc001bts.1	-	2	378	c.320T>G	c.(319-321)GTG>GGG	p.V107G	SPOCD1_uc001btu.2_Missense_Mutation_p.V107G|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	107					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CTGAGTAGGCACCGAGGGCAG	0.602000													63	47					0	0	0.014410	0	0
CSMD2	114784	broad.mit.edu	37	1	33999434	33999434	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:33999434G>T	uc001bxn.1	-	62	9550	c.9521C>A	c.(9520-9522)CCA>CAA	p.P3174Q	CSMD2_uc001bxm.1_Missense_Mutation_p.P3318Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3174	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGTCAGGTTTGGGAGGCAGGT	0.562000													5	42					0.00198382	0.00339499	0.001984	1	0
MTF1	4520	broad.mit.edu	37	1	38301355	38301355	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:38301355G>A	uc001cce.1	-	5	982	c.841C>T	c.(841-843)CGT>TGT	p.R281C	MTF1_uc009vvj.1_5'UTR	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	281	C2H2-type 5.					nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GTATGTGTACGAACGTGAGTT	0.408000													21	25					0	0	0.003330	0	0
KIAA0754	643314	broad.mit.edu	37	1	39878830	39878830	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:39878830A>G	uc009vvt.1	+	1	3655	c.2893A>G	c.(2893-2895)ACA>GCA	p.T965A	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	829	Ala-rich.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGTACCCATCACAGAGGAGGA	0.572000													13	13					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	1	43352964	43352964	+	RNA	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:43352964C>T	uc001cij.1	+	4		c.866C>T								Homo sapiens cDNA clone IMAGE:5170739.																		CACATCAATTCCCCGAAAAGC	0.582000													21	21					0	0	0.008871	0	0
CYP4B1	1580	broad.mit.edu	37	1	47276491	47276491	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:47276491G>A	uc001cqm.3	+	2	276	c.192G>A	c.(190-192)ACG>ACA	p.T64T	CYP4B1_uc009vyl.1_5'UTR|CYP4B1_uc001cqn.3_Silent_p.T64T|CYP4B1_uc009vym.2_Silent_p.T64T|CYP4B1_uc010omk.1_Intron|CYP4B1_uc010oml.1_5'Flank	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	64					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					TCCAGGAGACGGGGAGCCTGG	0.577000													32	44					0	0	0.003755	0	0
SPATA6	54558	broad.mit.edu	37	1	48861028	48861028	+	Splice_Site	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:48861028T>C	uc001crr.1	-	8	946	c.781_splice	c.e8-1	p.V261_splice	SPATA6_uc001crs.1_Splice_Site_p.V261_splice|SPATA6_uc010omv.1_Splice_Site_p.V247_splice	NM_019073	NP_061946	Q9NWH7	SPAT6_HUMAN	spermatogenesis associated 6 precursor						cell differentiation|multicellular organismal development|spermatogenesis	extracellular region				ovary(1)	1						GGGATCAACCTAGAGGAAGCA	0.403000													5	11					0	0	0.000602	0	0
C1orf168	199920	broad.mit.edu	37	1	57258413	57258413	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:57258413G>A	uc001cym.3	-	2	479	c.73C>T	c.(73-75)CCA>TCA	p.P25S	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.P25S	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	25										ovary(3)|skin(2)	5						ATAGGTCCTGGAAGAGGTGGA	0.408000													64	65					0	0	0.014410	0	0
LEPR	3953	broad.mit.edu	37	1	66102125	66102125	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:66102125G>A	uc001dci.2	+	20	3127	c.2925G>A	c.(2923-2925)GAG>GAA	p.E975E	LEPR_uc009waq.2_3'UTR	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	975	Cytoplasmic (Potential).				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TAACCTATGAGGACGAAAGCC	0.418000													15	19					0	0	0.002450	0	0
LPHN2	23266	broad.mit.edu	37	1	82408790	82408790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:82408790C>T	uc001dit.3	+	6	716	c.535C>T	c.(535-537)CGT>TGT	p.R179C	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R179C|LPHN2_uc001div.2_Missense_Mutation_p.R179C|LPHN2_uc009wcd.2_Missense_Mutation_p.R179C	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	179	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GACTCCCTATCGTACCGATAC	0.398000													16	22					0	0	0.006122	0	0
LPHN2	23266	broad.mit.edu	37	1	82416061	82416061	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:82416061C>T	uc001dit.3	+	7	1568	c.1387C>T	c.(1387-1389)CCC>TCC	p.P463S	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.P463S|LPHN2_uc001div.2_Missense_Mutation_p.P463S|LPHN2_uc009wcd.2_Missense_Mutation_p.P463S|LPHN2_uc001diw.2_Missense_Mutation_p.P34S	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	463	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AAATATTTTTCCCCTGCCAGA	0.463000													10	11					0	0	0.006214	0	0
DPYD	1806	broad.mit.edu	37	1	98205983	98205983	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:98205983C>T	uc001drv.2	-	4	423	c.286G>A	c.(286-288)GAT>AAT	p.D96N	DPYD_uc010oub.1_RNA|DPYD_uc001drw.2_Missense_Mutation_p.D96N	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	96	4Fe-4S ferredoxin-type 1.				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GATTTAATATCAAGATTAGTT	0.323000													26	53					0	0	0.013726	0	0
FAM40A	85369	broad.mit.edu	37	1	110584359	110584359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:110584359C>T	uc001dza.1	+	8	780	c.761C>T	c.(760-762)TCC>TTC	p.S254F	FAM40A_uc001dyz.1_Missense_Mutation_p.S159F|FAM40A_uc009wfp.1_Missense_Mutation_p.S78F	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	254						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		CCTCCAGGCTCCCCGCTGTAC	0.552000													83	62					0	0	0.014410	0	0
KCND3	3752	broad.mit.edu	37	1	112524383	112524383	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:112524383G>A	uc001ebu.1	-	2	1446	c.966C>T	c.(964-966)GGC>GGT	p.G322G	KCND3_uc001ebv.1_Silent_p.G322G	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	322	Helical; Name=Segment S5; (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGAGAAGAAAGCCCAGTTCGG	0.562000													35	26					0	0	0.005524	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458000	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			62	100					2.53126e-37	4.42305e-37	0.014410	1	0
CTSK	1513	broad.mit.edu	37	1	150776574	150776574	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:150776574A>G	uc001evp.1	-	5	665	c.541T>C	c.(541-543)TAC>CAC	p.Y181H	CTSK_uc001evq.1_Missense_Mutation_p.Y92H	NM_000396	NP_000387	P43235	CATK_HUMAN	cathepsin K preproprotein	181					proteolysis	lysosome	cysteine-type endopeptidase activity|protein binding			skin(1)	1	all_cancers(9;2.32e-51)|all_epithelial(9;3.89e-42)|all_lung(15;4.59e-35)|Lung NSC(24;1.7e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Colorectal(459;0.171)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			TTGGTCATGTAGCCCCCTCCA	0.483000													3	148					0	0	0.004672	0	0
FLG	2312	broad.mit.edu	37	1	152281783	152281783	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:152281783C>T	uc001ezu.1	-	3	5615	c.5579G>A	c.(5578-5580)GGA>GAA	p.G1860E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1860	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACTTCTGGATCCTGACTGCCC	0.552000									Ichthyosis				193	201					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152287016	152287016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:152287016C>T	uc001ezu.1	-	3	382	c.346G>A	c.(346-348)GAA>AAA	p.E116K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	116					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTTTTCTTCCTGTTTATTA	0.378000									Ichthyosis				50	65					0	0	0.014410	0	0
KPRP	448834	broad.mit.edu	37	1	152732689	152732689	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:152732689C>T	uc001fal.1	+	2	683	c.625C>T	c.(625-627)CAG>TAG	p.Q209*		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	209	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCCCAGTTCCAGTTGAGGCC	0.567000													87	83					0	0	0.014410	0	0
FCRL4	83417	broad.mit.edu	37	1	157557755	157557755	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:157557755G>A	uc001fqw.2	-	4	598	c.462C>T	c.(460-462)ATC>ATT	p.I154I	FCRL4_uc010phy.1_Intron	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	154	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				TTGCTTGTGGGATAAGAAGAT	0.328000													13	21					0	0	0.002450	0	0
KIRREL	55243	broad.mit.edu	37	1	158064897	158064897	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:158064897A>T	uc001frn.3	+	15	2665	c.2261A>T	c.(2260-2262)CAG>CTG	p.Q754L	KIRREL_uc010pib.1_Missense_Mutation_p.Q654L|KIRREL_uc009wsq.2_Missense_Mutation_p.Q590L|KIRREL_uc001fro.3_Missense_Mutation_p.Q568L|uc001frp.2_5'Flank	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	754	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					CAGCGCATGCAGACTCACGTG	0.587000													11	18					0	0	0.008291	0	0
SPTA1	6708	broad.mit.edu	37	1	158585181	158585181	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:158585181C>T	uc001fst.1	-	48	6812	c.6613G>A	c.(6613-6615)GAG>AAG	p.E2205K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2205	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCTGGATCTCCTTCTGTTTT	0.458000													26	37					0	0	0.005443	0	0
OR6K3	391114	broad.mit.edu	37	1	158687210	158687210	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:158687210C>T	uc010pip.1	-	1	744	c.744G>A	c.(742-744)GGG>GGA	p.G248G		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	248	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CCTTTTGCCTCCCTTCAGAAG	0.443000													5	5					0	0	0.000602	0	0
PYHIN1	149628	broad.mit.edu	37	1	158906944	158906944	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:158906944C>T	uc001ftb.2	+	2	489	c.244C>T	c.(244-246)CTT>TTT	p.L82F	PYHIN1_uc001fta.3_Missense_Mutation_p.L82F|PYHIN1_uc001ftc.2_Missense_Mutation_p.L82F|PYHIN1_uc001ftd.2_Missense_Mutation_p.L82F|PYHIN1_uc001fte.2_Missense_Mutation_p.L82F	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	82	DAPIN.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					TGCTGAAACTCTTAAAAGAGA	0.458000													19	28					0	0	0.006122	0	0
APCS	325	broad.mit.edu	37	1	159557927	159557927	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:159557927C>T	uc001ftv.2	+	2	197	c.101C>T	c.(100-102)TCT>TTT	p.S34F		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	34	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					CCTAGAGAATCTGTTACTGAT	0.423000													26	33					0	0	0.003954	0	0
ASTN1	460	broad.mit.edu	37	1	176903435	176903435	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:176903435G>A	uc001glc.2	-	16	2736	c.2524C>T	c.(2524-2526)CGT>TGT	p.R842C	ASTN1_uc001glb.1_Missense_Mutation_p.R842C|ASTN1_uc001gld.1_Missense_Mutation_p.R842C	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	850					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						AAATCTGCACGAGATGTAGCC	0.507000													17	18					0	0	0.008871	0	0
NPHS2	7827	broad.mit.edu	37	1	179530463	179530463	+	Nonsense_Mutation	SNP	G	A	A	rs74315343		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:179530463G>A	uc001gmq.3	-	3	497	c.412C>T	c.(412-414)CGA>TGA	p.R138*	NPHS2_uc009wxi.2_Nonsense_Mutation_p.R138*	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	138	Cytoplasmic (Potential).		R -> Q (in NPHS2).		excretion	integral to plasma membrane	protein binding				0						TGTCCCAGTCGGAATATAATT	0.388000													49	67					0	0	0.014410	0	0
CFHR3	10878	broad.mit.edu	37	1	196762545	196762545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:196762545G>A	uc001gtl.2	+	6	982	c.895G>A	c.(895-897)GAA>AAA	p.E299K	CFHR3_uc010poy.1_Missense_Mutation_p.E238K|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	299	Sushi 5.					extracellular space					0						GGATACCATTGAATTTATGTG	0.323000													29	17					0	0	0.008361	0	0
CR1	1378	broad.mit.edu	37	1	207741217	207741217	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:207741217G>A	uc001hfy.2	+	17	2791	c.2651G>A	c.(2650-2652)GGA>GAA	p.G884E	CR1_uc009xcl.1_Missense_Mutation_p.G434E|CR1_uc001hfx.2_Missense_Mutation_p.G1334E|CR1_uc009xck.1_Missense_Mutation_p.G434E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	884	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGACACACAGGAAAACCTCTG	0.453000													35	42					0	0	0.007835	0	0
LAMB3	3914	broad.mit.edu	37	1	209796937	209796937	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:209796937T>C	uc001hhg.2	-	15	2661	c.2271A>G	c.(2269-2271)GGA>GGG	p.G757G	LAMB3_uc009xco.2_Silent_p.G757G|LAMB3_uc001hhh.2_Silent_p.G757G|LAMB3_uc010psl.1_RNA|hsa-mir-4260|MI0015859_5'Flank	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	757	Potential.|Domain II.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		CTCCTCCTCCTCCCGCCTGCC	0.647000													6	36					0	0	0.008871	0	0
C1orf65	164127	broad.mit.edu	37	1	223568575	223568575	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:223568575C>A	uc001hoa.2	+	1	1861	c.1758C>A	c.(1756-1758)TTC>TTA	p.F586L		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	586										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		TCCAGGAGTTCCAGAAGCTCC	0.547000													28	38					1.74197e-06	3.01216e-06	0.006320	1	0
TRIM67	440730	broad.mit.edu	37	1	231344874	231344874	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:231344874C>T	uc009xfn.1	+	8	2043	c.2001C>T	c.(1999-2001)GCC>GCT	p.A667A		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	667	B30.2/SPRY.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				CAGACCCCGCCTTCGGGGTGG	0.632000													8	127					0	0	0.004482	0	0
SLC35F3	148641	broad.mit.edu	37	1	234452368	234452368	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:234452368C>T	uc001hwa.1	+	4	870	c.642C>T	c.(640-642)GCC>GCT	p.A214A	SLC35F3_uc001hvy.1_Silent_p.A283A	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	214	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CCATCCTCGCCATCGCTGGCA	0.577000													194	202					0	0	0.014410	0	0
CHRM3	1131	broad.mit.edu	37	1	240070799	240070799	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:240070799C>T	uc001hyp.2	+	5	827	c.48C>T	c.(46-48)ATC>ATT	p.I16I		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	16	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TTCCAAACATCAGCTCCTCCT	0.502000													33	52					0	0	0.013726	0	0
PLD5	200150	broad.mit.edu	37	1	242253243	242253243	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:242253243C>T	uc001hzn.1	-	10	1651	c.1524G>A	c.(1522-1524)CCG>CCA	p.P508P	PLD5_uc001hzl.3_Silent_p.P446P|PLD5_uc001hzm.3_Silent_p.P298P|PLD5_uc001hzo.1_Silent_p.P416P			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	508						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TTGAGCAGTTCGGCTGTTTGG	0.453000													93	101					0	0	0.014410	0	0
ZNF670	93474	broad.mit.edu	37	1	247201179	247201179	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:247201179T>A	uc001icd.1	-	4	913	c.742A>T	c.(742-744)ACT>TCT	p.T248S	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670	248					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			TTCTCTCCAGTATGAGATCTT	0.398000													44	2					0	0	0.010771	0	0
NLRP3	114548	broad.mit.edu	37	1	247587456	247587456	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:247587456G>A	uc001icr.2	+	5	849	c.711G>A	c.(709-711)AGG>AGA	p.R237R	NLRP3_uc001ics.2_Silent_p.R237R|NLRP3_uc001icu.2_Silent_p.R237R|NLRP3_uc001icw.2_Silent_p.R237R|NLRP3_uc001icv.2_Silent_p.R237R|NLRP3_uc010pyw.1_Silent_p.R235R|NLRP3_uc001ict.1_Silent_p.R235R	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	237	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCTGGCCAGGAAGATGATGT	0.537000													33	28					0	0	0.012213	0	0
OR2W5	441932	broad.mit.edu	37	1	247655377	247655377	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:247655377G>A	uc001icz.1	+	1	948	c.948G>A	c.(946-948)ACG>ACA	p.T316T		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	316					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GAGCCTCAACGAGGGGAACAC	0.498000													29	41					0	0	0.007291	0	0
OR11L1	391189	broad.mit.edu	37	1	248004797	248004797	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:248004797G>A	uc001idn.1	-	1	402	c.402C>T	c.(400-402)TTC>TTT	p.F134F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GATGCATGAGGAAGGGGTAGC	0.582000													18	23					0	0	0.008871	0	0
CCDC3	83643	broad.mit.edu	37	10	12940584	12940585	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:12940584_12940585CC>TT	uc001ilq.1	-	3	778_779	c.644_645GG>AA	c.(643-645)CGG>CAA	p.R215Q	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	215	Potential.					endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			CCCGGAGCTGCCGGTTGCGCTT	0.604000													51	11					0	0	0.004672	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669938	24669938	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:24669938G>A	uc001iru.3	+	3	898	c.495G>A	c.(493-495)CGG>CGA	p.R165R	KIAA1217_uc001irs.2_Silent_p.R85R|KIAA1217_uc001irt.3_Silent_p.R165R|KIAA1217_uc010qcy.1_Silent_p.R165R|KIAA1217_uc010qcz.1_Silent_p.R165R|KIAA1217_uc001irv.1_Silent_p.R15R|KIAA1217_uc010qda.1_RNA	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	165					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GAGGCAGCCGGACTCGTGCGA	0.532000													26	1					0	0	0.004656	0	0
MYO3A	53904	broad.mit.edu	37	10	26500832	26500832	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:26500832C>T	uc001isn.2	+	35	5151	c.4791C>T	c.(4789-4791)TAC>TAT	p.Y1597Y	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Nonsense_Mutation_p.R613*	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1597					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CCAACCCCTACGACTTCAGGA	0.652000													32	2					0	0	0.010818	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702272	27702272	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:27702272C>T	uc001itu.2	-	1	1026	c.908G>A	c.(907-909)GGA>GAA	p.G303E		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	303	Helical; (Potential).				spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAAGATGTATCCTCCGAAGAA	0.597000													39	8					0	0	0.006999	0	0
MKX	283078	broad.mit.edu	37	10	28023715	28023715	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:28023715C>T	uc001ity.3	-	5	733	c.508G>A	c.(508-510)GAA>AAA	p.E170K	MKX_uc001itx.3_Missense_Mutation_p.E170K	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	170					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGAGGATTTTCTCCATCTAAA	0.403000													23	3					0	0	0.002780	0	0
MPP7	143098	broad.mit.edu	37	10	28420515	28420515	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:28420515G>A	uc001iua.1	-	8	825	c.421C>T	c.(421-423)CGT>TGT	p.R141C	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.R141C|MPP7_uc009xla.2_Missense_Mutation_p.R141C|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	141	PDZ.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TTGACCAGACGGATTATTTTT	0.428000													49	5					0	0	0.014410	0	0
C10orf72	196740	broad.mit.edu	37	10	50255069	50255069	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:50255069G>A	uc001jhf.2	-	7	825	c.796C>T	c.(796-798)CAT>TAT	p.H266Y		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	266	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						TTCGGTTTATGGAACGTGGGG	0.478000													73	108					0	0	0.014410	0	0
CHAT	1103	broad.mit.edu	37	10	50859978	50859978	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:50859978G>A	uc001jhz.2	+	11	1713	c.1560G>A	c.(1558-1560)GGG>GGA	p.G520G	CHAT_uc001jhv.1_Silent_p.G402G|CHAT_uc001jhx.1_Silent_p.G402G|CHAT_uc001jhy.1_Silent_p.G402G|CHAT_uc001jia.2_Silent_p.G402G|CHAT_uc010qgs.1_Silent_p.G402G	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	520	Coenzyme A binding.				neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	ACAACTATGGGAAAACATTCA	0.413000													17	21					0	0	0.004990	0	0
AGAP6	414189	broad.mit.edu	37	10	51761856	51761856	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:51761856C>T	uc001jix.3	+	5	895	c.497C>T	c.(496-498)TCT>TTT	p.S166F		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	166					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						ACAATAATATCGTGAGTACAA	0.383000													57	52					0	0	0.014410	0	0
PCDH15	65217	broad.mit.edu	37	10	55571371	55571371	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:55571371G>A	uc010qhu.1	-	34	4777	c.4382C>T	c.(4381-4383)CCA>CTA	p.P1461L	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CAGACTCCATGGATAATTCCT	0.328000										HNSCC(58;0.16)			3	9					0	0	0.009096	0	0
ANK3	288	broad.mit.edu	37	10	61832815	61832815	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:61832815G>A	uc001jky.2	-	37	8016	c.7824C>T	c.(7822-7824)TCC>TCT	p.S2608S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2608					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTTCTCTGGGGACTGCAGTT	0.448000													10	27					0	0	0.006214	0	0
ANXA2P3	305	broad.mit.edu	37	10	66585942	66585942	+	RNA	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:66585942G>A	uc009xpm.1	+	1		c.658G>A				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						GAGTGAAGAGGAAAAGAACTG	0.468000													3	3					0	0	0.004672	0	0
CDH23	64072	broad.mit.edu	37	10	73326627	73326627	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:73326627C>T	uc001jrx.3	+	7	935	c.558C>T	c.(556-558)ATC>ATT	p.I186I	CDH23_uc001jrw.3_Silent_p.I186I|CDH23_uc001jrv.2_Silent_p.I181I|CDH23_uc009xql.2_Silent_p.I231I	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	186	Cadherin 2.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCCGCGGTATCGTCACAGTGA	0.647000													20	24					0	0	0.010504	0	0
DNAJB12	54788	broad.mit.edu	37	10	74100816	74100816	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:74100816G>A	uc010qjv.1	-	4	822	c.672C>T	c.(670-672)TTC>TTT	p.F224F	DNAJB12_uc001jsz.2_Silent_p.F224F|DNAJB12_uc001jta.2_Silent_p.F224F	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	190					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						AGCCACGGTGGAAATCCCCAT	0.592000													20	15					0	0	0.010504	0	0
CDHR1	92211	broad.mit.edu	37	10	85972935	85972935	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:85972935C>T	uc001kcv.2	+	16	1871	c.1871C>T	c.(1870-1872)TCC>TTC	p.S624F	CDHR1_uc001kcw.2_Missense_Mutation_p.S624F|CDHR1_uc009xst.2_Missense_Mutation_p.S328F|CDHR1_uc001kcx.2_5'UTR	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	624	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						GACATCAATTCCCACACGGGG	0.577000													41	43					0	0	0.006230	0	0
MMRN2	79812	broad.mit.edu	37	10	88702722	88702722	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:88702722C>T	uc001kea.2	-	6	1946	c.1819G>A	c.(1819-1821)GAG>AAG	p.E607K	MMRN2_uc010qmn.1_Missense_Mutation_p.E250K|MMRN2_uc009xtb.2_Missense_Mutation_p.E564K	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	607						extracellular space				large_intestine(1)	1						AGCACCGCCTCGTGCCGCAGC	0.746000													5	7					0	0	0.001168	0	0
MYOF	26509	broad.mit.edu	37	10	95121266	95121266	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:95121266A>G	uc001kin.2	-	28	3040	c.2917T>C	c.(2917-2919)TGG>CGG	p.W973R	MYOF_uc001kio.2_Missense_Mutation_p.W960R|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	973	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TCCCATTCCCAACCTGGAGGA	0.448000													51	82					0	0	0.014410	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541601	96541601	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:96541601C>T	uc010qnz.1	+	5	666	c.666C>T	c.(664-666)ATC>ATT	p.I222I	CYP2C19_uc009xus.1_Silent_p.I87I|CYP2C19_uc010qny.1_Silent_p.I200I	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	222					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTCCCACTATCATTGATTATT	0.294000													7	9					0	0	0.001984	0	0
SORCS3	22986	broad.mit.edu	37	10	106675616	106675616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:106675616G>A	uc001kyi.1	+	3	948	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	241	BNR 1.|Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CACCACCTATGAAAAGCTGAA	0.453000													19	28					0	0	0.010504	0	0
SORCS3	22986	broad.mit.edu	37	10	107015522	107015522	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:107015522G>A	uc001kyi.1	+	24	3527	c.3300G>A	c.(3298-3300)GGG>GGA	p.G1100G		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1100	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity	p.G1100R(1)		ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TGAAGCCGGGGGTACAAGTCA	0.453000													19	24					0	0	0.014323	0	0
TECTB	6975	broad.mit.edu	37	10	114044417	114044417	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:114044417T>C	uc001kzr.1	+	2	201	c.201T>C	c.(199-201)GGT>GGC	p.G67G		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	67	ZP.					anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		ACGAAGGAGGTTACTACCAAT	0.483000													7	11					0	0	0.001984	0	0
OR51S1	119692	broad.mit.edu	37	11	4869969	4869969	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:4869969G>A	uc010qyo.1	-	1	470	c.470C>T	c.(469-471)TCT>TTT	p.S157F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCATCGAAAAGAAATGGCCAG	0.552000													41	66					0	0	0.008740	0	0
OR51T1	401665	broad.mit.edu	37	11	4904108	4904108	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:4904108G>A	uc010qyp.1	+	1	1060	c.1060G>A	c.(1060-1062)GAT>AAT	p.D354N		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	327	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGGAAGATGGGATTGAAGGTA	0.468000													12	6					0	0	0.013537	0	0
OR51A2	401667	broad.mit.edu	37	11	4976302	4976302	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:4976302G>A	uc010qyt.1	-	1	642	c.642C>T	c.(640-642)CTC>CTT	p.L214L		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACACAGCAATGAGAATAAAGT	0.438000													21	0					0	0	0.014323	0	0
OR52A5	390054	broad.mit.edu	37	11	5153059	5153059	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:5153059G>A	uc010qyx.1	-	1	814	c.814C>T	c.(814-816)CCA>TCA	p.P272S		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATATATGGTGGTATGTGTGAA	0.413000													17	17					0	0	0.006122	0	0
OR52A5	390054	broad.mit.edu	37	11	5153739	5153739	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:5153739G>A	uc010qyx.1	-	1	134	c.134C>T	c.(133-135)TCC>TTC	p.S45F		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TAAAATTAGGGAATTTCCAAT	0.403000													26	27					0	0	0.003954	0	0
CCKBR	887	broad.mit.edu	37	11	6292484	6292484	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:6292484C>T	uc001mcp.2	+	5	1248	c.1055C>T	c.(1054-1056)GCC>GTC	p.A352V	CCKBR_uc001mcq.2_Missense_Mutation_p.A280V|CCKBR_uc001mcr.2_Missense_Mutation_p.A352V|CCKBR_uc001mcs.2_Missense_Mutation_p.A421V|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	352	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GTTTATAGTGCCAACACGTGG	0.577000													36	43					0	0	0.005524	0	0
ZNF215	7762	broad.mit.edu	37	11	6977591	6977591	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:6977591C>T	uc001mey.2	+	7	1971	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Silent_p.F223F|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	461					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		GAAACAATTTCTATCAATGTG	0.393000													25	27					0	0	0.004656	0	0
OR4B1	119765	broad.mit.edu	37	11	48238568	48238568	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:48238568C>T	uc010rhs.1	+	1	207	c.207C>T	c.(205-207)ATC>ATT	p.I69I		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						TGGTGGAGATCAGTTATTCCT	0.473000													37	31					0	0	0.005524	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735637	55735637	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:55735637C>T	uc010rit.1	-	1	303	c.303G>A	c.(301-303)ACG>ACA	p.T101T		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	101	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					GGAGACACTCCGTGCCTCCAA	0.428000													21	42					0	0	0.012319	0	0
LPXN	9404	broad.mit.edu	37	11	58317539	58317539	+	Silent	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:58317539G>T	uc001nmw.2	-	6	712	c.567C>A	c.(565-567)CCC>CCA	p.P189P	LPXN_uc009ymp.2_Silent_p.P59P|LPXN_uc010rkj.1_Silent_p.P194P|LPXN_uc010rkk.1_Silent_p.P169P	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	189	LIM zinc-binding 1.				cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				GCTCAAAGAAGGGACTGGAGC	0.502000													6	189					0.00198382	0.00339499	0.001984	1	0
SYT7	9066	broad.mit.edu	37	11	61318916	61318916	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:61318916G>A	uc001nrv.2	-	3	161	c.155C>T	c.(154-156)TCC>TTC	p.S52F	SYT7_uc009ynr.2_Missense_Mutation_p.S52F|SYT7_uc001nrx.1_RNA	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	52	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CGTCTCCAAGGAATTCTTGTA	0.592000													36	40					0	0	0.007835	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111547	64111547	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:64111547G>A	uc001nzy.2	+	14	1578	c.1534G>A	c.(1534-1536)GAC>AAC	p.D512N	CCDC88B_uc009ypo.1_Missense_Mutation_p.D509N|CCDC88B_uc001nzz.1_Missense_Mutation_p.D161N	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	512					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						TGTGGCCTTCGACCACAGCCC	0.637000													39	57					0	0	0.006999	0	0
NPAS4	266743	broad.mit.edu	37	11	66191083	66191083	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:66191083G>A	uc001ohx.1	+	6	1019	c.843G>A	c.(841-843)GTG>GTA	p.V281V	NPAS4_uc010rpc.1_Silent_p.V71V	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	281	PAC.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						CAGAGATGGTGGTGAGGCTAC	0.517000													46	59					0	0	0.014410	0	0
CPT1A	1374	broad.mit.edu	37	11	68540830	68540830	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:68540830G>A	uc001oog.3	-	14	1813	c.1643C>T	c.(1642-1644)TCC>TTC	p.S548F	CPT1A_uc001oof.3_Missense_Mutation_p.S548F|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	548	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	GAATGGGAAGGAATGGAAATC	0.488000													43	28					0	0	0.008740	0	0
LRRC32	2615	broad.mit.edu	37	11	76372352	76372352	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:76372352G>A	uc001oxq.3	-	3	528	c.285C>T	c.(283-285)GCC>GCT	p.A95A	LRRC32_uc001oxr.3_Silent_p.A95A|LRRC32_uc010rsf.1_Silent_p.A95A	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	95	LRR 2.|Extracellular (Potential).					integral to plasma membrane					0						GGTGGGTCAGGGCCTGGAAGG	0.657000													52	42					0	0	0.014410	0	0
FOLR4	390243	broad.mit.edu	37	11	94038819	94038819	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:94038819C>T	uc010rud.1	+	1	17	c.17C>T	c.(16-18)CCG>CTG	p.P6L		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	6						extracellular region	folic acid binding|receptor activity			ovary(1)	1						TGCTGGTGGCCGCTCCTGCTA	0.582000													86	79					0	0	0.014410	0	0
MMP1	4312	broad.mit.edu	37	11	102668118	102668118	+	Silent	SNP	C	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:102668118C>G	uc001phi.2	-	2	362	c.219G>C	c.(217-219)CTG>CTC	p.L73L	uc001phh.1_Intron|MMP1_uc010ruv.1_Silent_p.L7L	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	73					blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		CAGTCACTTTCAGCCCAAAGA	0.478000													41	21					0	0	0.013114	0	0
HTR3A	3359	broad.mit.edu	37	11	113856811	113856811	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:113856811G>A	uc010rxb.1	+	6	870	c.637G>A	c.(637-639)GGA>AGA	p.G213R	HTR3A_uc010rxa.1_Missense_Mutation_p.G213R|HTR3A_uc009yyx.2_Intron|HTR3A_uc010rxc.1_Missense_Mutation_p.G192R	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	207	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	CATGAACCAGGGAGAGTGGGA	0.493000													111	17					0	0	0.014410	0	0
NNMT	4837	broad.mit.edu	37	11	114182986	114182986	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:114182986G>A	uc001por.1	+	5	846	c.582G>A	c.(580-582)GTG>GTA	p.V194V	NNMT_uc001pos.1_Silent_p.V194V	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	194					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	GCTTCCTGGTGATCATGGATG	0.612000													32	5					0	0	0.009535	0	0
FAM55D	54827	broad.mit.edu	37	11	114442165	114442165	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:114442165C>T	uc001ppc.2	-	6	1311	c.1130G>A	c.(1129-1131)GGA>GAA	p.G377E	FAM55D_uc001ppd.2_Missense_Mutation_p.G93E	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	377						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TTGCAATTTTCCAGATTCATG	0.378000													26	4					0	0	0.006320	0	0
TMEM225	338661	broad.mit.edu	37	11	123754837	123754837	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:123754837C>T	uc001pzi.2	-	3	616	c.408G>A	c.(406-408)AGG>AGA	p.R136R		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	136						integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						TCCAGGTGATCCTATAATTAG	0.418000													4	1					0	0	0.009096	0	0
OR10G4	390264	broad.mit.edu	37	11	123886691	123886691	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr11:123886691G>A	uc010sac.1	+	1	410	c.410G>A	c.(409-411)GGG>GAG	p.G137E		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATGATGAGTGGGAGCAGGTGT	0.562000													62	17					0	0	0.014410	0	0
IQSEC3	440073	broad.mit.edu	37	12	248380	248380	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:248380C>T	uc001qhw.1	+	1	948	c.942C>T	c.(940-942)GCC>GCT	p.A314A	IQSEC3_uc001qhu.1_Silent_p.A314A|IQSEC3_uc001qht.1_Silent_p.A399A|uc001qhv.1_Intron	NM_015232	NP_056047	Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	617					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|large_intestine(1)|skin(1)	4	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		CGGCCTCCGCCTCCAAGGACG	0.692000													4	5					0	0	0.009096	0	0
SCNN1A	6337	broad.mit.edu	37	12	6471234	6471234	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:6471234C>G	uc001qnx.2	-	4	1147	c.858G>C	c.(856-858)CAG>CAC	p.Q286H	SCNN1A_uc001qnv.2_5'UTR|SCNN1A_uc001qnw.2_Missense_Mutation_p.Q345H|SCNN1A_uc010sfb.1_Missense_Mutation_p.Q309H	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	286	Extracellular (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	TGCAGGAGACCTGGTTGAAGC	0.637000													33	57					0	0	0.004878	0	0
NCAPD2	9918	broad.mit.edu	37	12	6618900	6618900	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:6618900C>T	uc001qoo.2	+	3	191	c.145C>T	c.(145-147)CGA>TGA	p.R49*	NCAPD2_uc009zen.1_Nonsense_Mutation_p.R49*|NCAPD2_uc010sfd.1_Silent_p.F23F|SCARNA10_uc009zeo.1_5'Flank	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	49	Interactions with SMC2 and SMC4.				cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						GGCTGCCTTTCGAGCTCAGGG	0.413000													86	102					0	0	0.014410	0	0
CD163	9332	broad.mit.edu	37	12	7639179	7639179	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:7639179C>T	uc001qsz.3	-	10	2502	c.2374G>A	c.(2374-2376)GAA>AAA	p.E792K	CD163_uc001qta.3_Missense_Mutation_p.E792K|CD163_uc009zfw.2_Missense_Mutation_p.E825K	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	792	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ATGCGGGATTCTTTTCCATTG	0.512000													79	82					0	0	0.014410	0	0
CLEC4E	26253	broad.mit.edu	37	12	8689719	8689719	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:8689719C>T	uc001quo.1	-	4	529	c.364G>A	c.(364-366)GAG>AAG	p.E122K		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	122	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					ACCTGCTCCTCCTGTGAGTTG	0.493000													45	49					0	0	0.014410	0	0
ARHGDIB	397	broad.mit.edu	37	12	15097773	15097773	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:15097773C>T	uc001rcq.1	-	5	447	c.343G>A	c.(343-345)GTG>ATG	p.V115M	ARHGDIB_uc001rcp.1_RNA	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	115					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						TCCCTGTTCACCTGCAGGTGG	0.473000													32	50					0	0	0.012213	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21008070	21008070	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:21008070C>T	uc001rek.2	+	3	319	c.193C>T	c.(193-195)CTT>TTT	p.L65F	SLCO1B3_uc001rel.2_Missense_Mutation_p.L65F|SLCO1B3_uc010sil.1_Missense_Mutation_p.L65F|LST-3TM12_uc010sim.1_Missense_Mutation_p.L65F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	65	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ATCCTCTTCTCTTGCTGGTTT	0.338000													8	20					0	0	0.003080	0	0
CNTN1	1272	broad.mit.edu	37	12	41410483	41410483	+	Splice_Site	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:41410483G>A	uc001rmm.1	+	19	2298	c.2185_splice	c.e19-1	p.P729_splice	CNTN1_uc001rmn.1_Splice_Site_p.P718_splice	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor						axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TTTCTATTTAGCCTTTGTCAA	0.368000													6	21					0	0	0.001168	0	0
KRT77	374454	broad.mit.edu	37	12	53096962	53096962	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:53096962C>T	uc001saw.2	-	1	286	c.257G>A	c.(256-258)GGG>GAG	p.G86E	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	86	Head.					keratin filament	structural molecule activity			ovary(1)	1						CCCTACTCCCCCACCCTGGCA	0.587000													13	3					0	0	0.013537	0	0
OR9K2	441639	broad.mit.edu	37	12	55524141	55524141	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:55524141C>T	uc010spe.1	+	1	589	c.589C>T	c.(589-591)CGG>TGG	p.R197W		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TTGCGCTTCTCGGGCTGTTGA	0.403000													32	21					0	0	0.010818	0	0
OR10A7	121364	broad.mit.edu	37	12	55614883	55614883	+	Silent	SNP	T	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:55614883T>A	uc010spf.1	+	1	75	c.75T>A	c.(73-75)GTT>GTA	p.V25V		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						AGATGCAAGTTTCCCTCTTTA	0.378000													23	31					0	0	0.002780	0	0
MYO1A	4640	broad.mit.edu	37	12	57430736	57430736	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:57430736C>T	uc001smw.3	-	20	2438	c.2195G>A	c.(2194-2196)CGG>CAG	p.R732Q	MYO1A_uc010sqz.1_Missense_Mutation_p.R570Q|MYO1A_uc009zpd.2_Missense_Mutation_p.R732Q	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	732	IQ 2.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CATGTTTCCCCGAAACCAAGA	0.512000													55	97					0	0	0.014410	0	0
IRAK3	11213	broad.mit.edu	37	12	66597655	66597655	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:66597655C>T	uc001sth.2	+	2	400	c.298C>T	c.(298-300)CAT>TAT	p.H100Y	IRAK3_uc010ssy.1_Intron	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	100	Death.				interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		TCGAGCTATTCATTTAATTAC	0.368000													11	23					0	0	0.010729	0	0
CPM	1368	broad.mit.edu	37	12	69250441	69250441	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:69250441C>T	uc001sup.2	-	9	1169	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	CPM_uc001sur.2_Missense_Mutation_p.D370N|CPM_uc001suq.2_Missense_Mutation_p.D370N	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	370					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ATGTGTGGATCATGTCCAGGG	0.408000													23	37					0	0	0.003330	0	0
PTPRB	5787	broad.mit.edu	37	12	70980858	70980858	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:70980858C>T	uc001swb.3	-	7	1616	c.1586G>A	c.(1585-1587)CGA>CAA	p.R529Q	PTPRB_uc010sto.1_Missense_Mutation_p.R529Q|PTPRB_uc010stp.1_Missense_Mutation_p.R439Q|PTPRB_uc001swc.3_Missense_Mutation_p.R747Q|PTPRB_uc001swa.3_Missense_Mutation_p.R747Q|PTPRB_uc001swd.3_Missense_Mutation_p.R746Q|PTPRB_uc009zrr.1_Missense_Mutation_p.R626Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	529	Fibronectin type-III 6.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CATGTATTTTCGTCCAGGCAC	0.373000													36	38					0	0	0.004289	0	0
PTPRB	5787	broad.mit.edu	37	12	71029512	71029512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:71029512C>T	uc001swc.3	-	2	434	c.390G>A	c.(388-390)TGG>TGA	p.W130*	PTPRB_uc001swa.3_Nonsense_Mutation_p.W130*|PTPRB_uc001swd.3_Nonsense_Mutation_p.W129*|PTPRB_uc009zrr.1_Intron|PTPRB_uc001swe.2_Nonsense_Mutation_p.W130*	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTATTTTCATCCAGCTATGGA	0.438000													25	18					0	0	0.002780	0	0
ANKS1B	56899	broad.mit.edu	37	12	99837501	99837501	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:99837501G>A	uc001tge.1	-	11	1942	c.1525C>T	c.(1525-1527)CCA>TCA	p.P509S	ANKS1B_uc001tgf.1_Missense_Mutation_p.P89S|ANKS1B_uc009ztt.1_Missense_Mutation_p.P475S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	509						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TCAGGGGATGGAGGTGAACAA	0.418000													5	2					0	0	0.001168	0	0
MYO1H	283446	broad.mit.edu	37	12	109847373	109847373	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:109847373G>A	uc010sxn.1	+	10	1119	c.1119G>A	c.(1117-1119)AGG>AGA	p.R373R		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						ATTTCACCAGGAAAACTGTAA	0.403000													77	10					0	0	0.014410	0	0
TBX3	6926	broad.mit.edu	37	12	115117741	115117741	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:115117741C>T	uc001tvt.1	-	3	1658	c.694G>A	c.(694-696)GGG>AGG	p.G232R	TBX3_uc001tvu.1_Intron	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	232					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CTATAATTCCCCTGCCACGTA	0.443000													14	0					0	0	0.004007	0	0
KSR2	283455	broad.mit.edu	37	12	117922325	117922325	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:117922325G>A	uc001two.2	-	16	2314	c.2259C>T	c.(2257-2259)ATC>ATT	p.I753I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	782	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTTGTGTAGGATTCCCTTGG	0.522000													17	2					0	0	0.008871	0	0
DNAH10	196385	broad.mit.edu	37	12	124335560	124335560	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr12:124335560C>T	uc001uft.3	+	34	5899	c.5874C>T	c.(5872-5874)ATC>ATT	p.I1958I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1958	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGGTCGTGATCGTGCCCGACC	0.642000													32	5					0	0	0.013726	0	0
MIPEP	4285	broad.mit.edu	37	13	24415577	24415577	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:24415577C>T	uc001uox.3	-	11	1257	c.1157G>A	c.(1156-1158)TGC>TAC	p.C386Y		NM_005932	NP_005923	Q99797	MIPEP_HUMAN	mitochondrial intermediate peptidase precursor	386					protein processing involved in protein targeting to mitochondrion|proteolysis	mitochondrial matrix	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		all_cancers(29;1.83e-22)|all_epithelial(30;8.75e-19)|all_lung(29;9.17e-18)|Lung SC(185;0.0225)|Breast(139;0.14)		all cancers(112;0.00389)|Epithelial(112;0.0266)|OV - Ovarian serous cystadenocarcinoma(117;0.0717)|Lung(94;0.207)|GBM - Glioblastoma multiforme(144;0.232)		GCCTTCCATGCATGCTCCAAG	0.418000													27	53					0	0	0.006320	0	0
ATP12A	479	broad.mit.edu	37	13	25265129	25265129	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:25265129C>T	uc001upp.2	+	8	996	c.809C>T	c.(808-810)ACC>ATC	p.T270I	ATP12A_uc010aaa.2_Missense_Mutation_p.T276I	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	270	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GGCACTGTCACCGGCATGGTT	0.562000													22	109					0	0	0.004289	0	0
POSTN	10631	broad.mit.edu	37	13	38156623	38156623	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:38156623G>A	uc001uwo.3	-	10	1390	c.1272C>T	c.(1270-1272)CTC>CTT	p.L424L	POSTN_uc010tet.1_5'Flank|POSTN_uc001uwp.3_Silent_p.L424L|POSTN_uc001uwr.2_Silent_p.L424L|POSTN_uc001uwq.2_Silent_p.L424L|POSTN_uc010teu.1_Silent_p.L424L|POSTN_uc010tev.1_Silent_p.L424L|POSTN_uc010tew.1_Silent_p.L424L|POSTN_uc010tex.1_Silent_p.L339L	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	424	FAS1 3.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TTAATTTAAGGAGGCGCTGAT	0.363000													25	22					0	0	0.004656	0	0
TRPC4	7223	broad.mit.edu	37	13	38248468	38248468	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:38248468C>T	uc001uws.2	-	5	1506	c.1271G>A	c.(1270-1272)GGC>GAC	p.G424D	TRPC4_uc010abv.2_Missense_Mutation_p.G4D|TRPC4_uc001uwt.2_Missense_Mutation_p.G424D|TRPC4_uc010tey.1_Missense_Mutation_p.G424D|TRPC4_uc010abw.2_Missense_Mutation_p.G251D|TRPC4_uc010abx.2_Missense_Mutation_p.G424D|TRPC4_uc010aby.2_Missense_Mutation_p.G424D	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	424	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CTGAAGTCCGCCATCCCACAT	0.338000													13	34					0	0	0.003163	0	0
HTR2A	3356	broad.mit.edu	37	13	47466685	47466685	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:47466685C>T	uc001vbq.2	-	2	587	c.453G>A	c.(451-453)TGG>TGA	p.W151*	HTR2A_uc001vbr.2_Nonsense_Mutation_p.W51*|HTR2A_uc010acr.2_Nonsense_Mutation_p.W151*	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	151	Helical; Name=3; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CCAGGTAAATCCAGACTGCAC	0.592000													82	81					0	0	0.014410	0	0
MLNR	2862	broad.mit.edu	37	13	49795328	49795328	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:49795328C>T	uc010tgj.1	+	1	855	c.855C>T	c.(853-855)GCC>GCT	p.A285A		NM_001507	NP_001498	O43193	MTLR_HUMAN	motilin receptor	285	Cytoplasmic (Potential).				digestion	integral to plasma membrane	growth hormone-releasing hormone receptor activity				0		all_lung(13;8.31e-06)|Lung NSC(96;0.000251)|Breast(56;0.0008)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;6.1e-09)		GAGGCCCGGCCGCCTCGGGGC	0.721000													22	8					0	0	0.010504	0	0
PCDH20	64881	broad.mit.edu	37	13	61986484	61986484	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:61986484G>A	uc001vid.3	-	2	2112	c.1748C>T	c.(1747-1749)TCC>TTC	p.S583F	PCDH20_uc010thj.1_Missense_Mutation_p.S583F	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	556	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ACTGTCTAAGGAAAAATATGA	0.453000													35	46					0	0	0.003271	0	0
DZIP1	22873	broad.mit.edu	37	13	96242060	96242060	+	Missense_Mutation	SNP	G	A	A	rs139553238		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr13:96242060G>A	uc001vmk.2	-	18	2822	c.1970C>T	c.(1969-1971)CCA>CTA	p.P657L	DZIP1_uc001vmi.2_5'Flank|DZIP1_uc001vmj.2_Missense_Mutation_p.P133L|DZIP1_uc001vml.2_Missense_Mutation_p.P638L	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	657					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			TACTCACTTTGGAACAGATGT	0.259000													50	40					0	0	0.014410	0	0
OR4K2	390431	broad.mit.edu	37	14	20344609	20344609	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr14:20344609C>T	uc001vwh.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTATGTATTTCCTGCTTACCA	0.403000													58	169					0	0	0.014410	0	0
KCNH5	27133	broad.mit.edu	37	14	63447647	63447647	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr14:63447647G>A	uc001xfx.2	-	6	936	c.885C>T	c.(883-885)ATC>ATT	p.I295I	KCNH5_uc001xfy.2_Silent_p.I295I|KCNH5_uc001xfz.1_Silent_p.I237I|KCNH5_uc001xga.2_Silent_p.I237I	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	295	Helical; Name=Segment S3; (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACAGCAGATCGATCACAAACC	0.403000													14	2					0	0	0.002450	0	0
FOS	2353	broad.mit.edu	37	14	75747343	75747343	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr14:75747343G>A	uc001xrn.2	+	3	679	c.474G>A	c.(472-474)AGG>AGA	p.R158R	FOS_uc010tva.1_Intron|FOS_uc010asi.2_Silent_p.R44R|FOS_uc001xro.2_Silent_p.R10R	NM_005252	NP_005243	P01100	FOS_HUMAN	v-fos FBJ murine osteosarcoma viral oncogene	158	Basic motif.				cellular response to reactive oxygen species|DNA methylation|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway		protein dimerization activity|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			lung(2)|ovary(1)	3		all_lung(585;0.0138)|all_epithelial(191;0.0263)|all_neural(303;0.112)		BRCA - Breast invasive adenocarcinoma(234;0.0117)		GCAACCGGAGGAGGGAGCTGA	0.453000													12	1					0	0	0.013537	0	0
ISM2	145501	broad.mit.edu	37	14	77942259	77942259	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr14:77942259C>T	uc001xtz.2	-	7	1469	c.1395G>A	c.(1393-1395)CTG>CTA	p.L465L	ISM2_uc001xua.2_3'UTR|ISM2_uc001xty.2_Silent_p.L377L|ISM2_uc010tvl.1_Silent_p.L384L	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	465	AMOP.					extracellular region				skin(1)	1						GGTAGATGTCCAGGCGCTCGC	0.672000													20	3					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	15	22440666	22440666	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:22440666C>T	uc001yug.2	-	1	200	c.181G>A	c.(181-183)GAC>AAC	p.D61N						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTCCTCACGTCCAGCCTCAGG	0.527000													5	17					0	0	0.000602	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42434831	42434831	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:42434831C>T	uc001zoz.2	-	19	2287	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	PLA2G4F_uc010bcq.2_Missense_Mutation_p.E39K|PLA2G4F_uc001zoy.2_Missense_Mutation_p.E374K|PLA2G4F_uc010bcr.2_Missense_Mutation_p.E493K|PLA2G4F_uc001zpa.2_Missense_Mutation_p.E493K|PLA2G4F_uc010bcs.2_Missense_Mutation_p.E529K	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	742	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		TCACGGGCCTCCTCCATGTCC	0.602000													35	34					0	0	0.004289	0	0
EPB42	2038	broad.mit.edu	37	15	43498717	43498717	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:43498717G>T	uc001zra.3	-	10	1729	c.1429C>A	c.(1429-1431)CTG>ATG	p.L477M	EPB42_uc001zqz.3_Missense_Mutation_p.L144M|EPB42_uc010bde.2_Missense_Mutation_p.L322M|EPB42_uc001zrb.3_Missense_Mutation_p.L507M|EPB42_uc010udm.1_Missense_Mutation_p.L399M	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	477					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		TTCAAGAGCAGGTACAGAGGA	0.552000													6	136					8.12818e-05	0.000139677	0.001984	1	0
SEMA6D	80031	broad.mit.edu	37	15	48058107	48058107	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:48058107T>A	uc010bek.2	+	14	1829	c.1469T>A	c.(1468-1470)TTA>TAA	p.L490*	SEMA6D_uc001zvw.2_Nonsense_Mutation_p.L490*|SEMA6D_uc001zvy.2_Nonsense_Mutation_p.L490*|SEMA6D_uc001zvz.2_Nonsense_Mutation_p.L490*|SEMA6D_uc001zwa.2_Nonsense_Mutation_p.L490*|SEMA6D_uc001zwb.2_Nonsense_Mutation_p.L490*|SEMA6D_uc001zwc.2_Nonsense_Mutation_p.L490*	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	490	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		GTCATCTCATTACAGTTGGAT	0.423000													12	23					0	0	0.010729	0	0
CYP19A1	1588	broad.mit.edu	37	15	51529075	51529075	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:51529075C>T	uc001zyz.3	-	4	528	c.277G>A	c.(277-279)GAA>AAA	p.E93K	CYP19A1_uc001zza.3_Missense_Mutation_p.E93K|CYP19A1_uc001zzb.2_Missense_Mutation_p.E93K|CYP19A1_uc001zzd.2_Missense_Mutation_p.E93K|CYP19A1_uc010bey.1_Missense_Mutation_p.E93K	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	93					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	ATGAGTGTTTCCTCTCCAGAG	0.438000													38	46					0	0	0.009718	0	0
GLCE	26035	broad.mit.edu	37	15	69548401	69548401	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:69548401C>T	uc002ary.1	+	3	484	c.256C>T	c.(256-258)CCT>TCT	p.P86S		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	86	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						GAAAGCACCCCCTGTTGTTGG	0.433000													12	20					0	0	0.013537	0	0
C15orf59	388135	broad.mit.edu	37	15	74032299	74032299	+	Missense_Mutation	SNP	G	A	A	rs149206275	byFrequency	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:74032299G>A	uc002avy.2	-	2	1186	c.841C>T	c.(841-843)CCC>TCC	p.P281S		NM_001039614	NP_001034703	Q2T9L4	CO059_HUMAN	hypothetical protein LOC388135	281										pancreas(1)	1						GCTGTGTAGGGCAGAACCGTC	0.567000													89	116					0	0	0.014410	0	0
CHRNA3	1136	broad.mit.edu	37	15	78893597	78893597	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:78893597C>T	uc002bec.2	-	5	1573	c.1387G>A	c.(1387-1389)GAG>AAG	p.E463K	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.E463K	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	463	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						ATCCTTACCTCTTTGGCTTCA	0.343000													49	44					0	0	0.014410	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79080631	79080631	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:79080631C>T	uc002bej.3	-	8	1475	c.1264G>A	c.(1264-1266)GAC>AAC	p.D422N	ADAMTS7_uc010und.1_Silent_p.T396T|ADAMTS7_uc002bek.1_Missense_Mutation_p.D422N	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	422	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GGAGCGGCGTCGTACAGGAGC	0.572000													52	76					0	0	0.014410	0	0
MCTP2	55784	broad.mit.edu	37	15	94899466	94899466	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr15:94899466C>T	uc002btj.2	+	8	1171	c.1106C>T	c.(1105-1107)TCA>TTA	p.S369L	MCTP2_uc010urg.1_Missense_Mutation_p.S369L|MCTP2_uc002bti.2_Missense_Mutation_p.S369L|MCTP2_uc010boj.2_Missense_Mutation_p.S98L|MCTP2_uc010bok.2_Missense_Mutation_p.S369L|MCTP2_uc002btk.3_5'UTR|MCTP2_uc002btl.2_5'UTR	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	369	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AAGAATGTCTCAGGAGGAAGC	0.408000													17	13					0	0	0.004990	0	0
PKD1	5310	broad.mit.edu	37	16	2140375	2140376	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:2140375_2140376GG>AA	uc002cos.1	-	45	12563_12564	c.12354_12355CC>TT	c.(12352-12357)TACCGG>TATTGG	p.R4119W	PKD1_uc002cot.1_Missense_Mutation_p.R4118W|MIR1225_hsa-mir-1225|MI0006311_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	4119	Cytoplasmic (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CAGGCCGGCCGGTACAGCTCTC	0.673000													24	35					0	0	0.004672	0	0
GLYR1	84656	broad.mit.edu	37	16	4872902	4872902	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:4872902G>A	uc002cxx.3	-	7	692	c.655C>T	c.(655-657)CAT>TAT	p.H219Y	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.H150Y|GLYR1_uc002cya.2_Missense_Mutation_p.H219Y|GLYR1_uc010uxv.1_Missense_Mutation_p.H138Y	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	219					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						AGCAGGAAATGATGGAAATGA	0.502000													52	76					0	0	0.014410	0	0
TMC5	79838	broad.mit.edu	37	16	19451854	19451854	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:19451854G>A	uc002dgc.3	+	3	1243	c.494G>A	c.(493-495)GGA>GAA	p.G165E	TMC5_uc010vaq.1_Missense_Mutation_p.G165E|TMC5_uc002dgb.3_Missense_Mutation_p.G165E|TMC5_uc010var.1_Missense_Mutation_p.G165E	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	165	Extracellular (Potential).					integral to membrane				skin(1)	1						GACTACCCTGGAGCTCAGAGC	0.468000													65	79					0	0	0.014410	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883961	19883961	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:19883961G>A	uc002dgt.2	-	2	315	c.207C>T	c.(205-207)ATC>ATT	p.I69I	GPRC5B_uc010vav.1_Silent_p.I95I	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	69	Helical; Name=1; (Potential).									lung(1)|breast(1)|skin(1)	3						GGAGCAGTGTGATCAGGGCGC	0.642000													42	34					0	0	0.014410	0	0
ACSM1	116285	broad.mit.edu	37	16	20681188	20681188	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:20681188G>A	uc002dhm.1	-	5	941	c.873C>T	c.(871-873)ATC>ATT	p.I291I	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.I291I	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	291					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GCAGATGGTGGATAAAGACTG	0.478000													23	33					0	0	0.003954	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24981828	24981828	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:24981828C>T	uc002dnb.2	-	4	365	c.272G>A	c.(271-273)GGG>GAG	p.G91E	ARHGAP17_uc002dnc.2_Missense_Mutation_p.G91E|ARHGAP17_uc010vcf.1_Intron|ARHGAP17_uc002dnf.2_5'Flank|ARHGAP17_uc002dng.1_Missense_Mutation_p.G91E	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	91	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		CAACTCTTACCCCAGGAGAGA	0.498000													91	101					0	0	0.014410	0	0
SH2B1	25970	broad.mit.edu	37	16	28880340	28880341	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:28880340_28880341CC>TT	uc002dri.2	+	6	1494_1495	c.1055_1056CC>TT	c.(1054-1056)TCC>TTT	p.S352F	uc010vct.1_Intron|SH2B1_uc010vdc.1_Missense_Mutation_p.S42F|SH2B1_uc002drj.2_Missense_Mutation_p.S352F|SH2B1_uc002drk.2_Missense_Mutation_p.S352F|SH2B1_uc002drl.2_Missense_Mutation_p.S352F|SH2B1_uc010vdd.1_Missense_Mutation_p.S16F|SH2B1_uc010vde.1_Missense_Mutation_p.S352F|SH2B1_uc002drm.2_Missense_Mutation_p.S352F	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	352	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).|PH.				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						GAAGGTCCATCCGAGTATATCA	0.554000													34	44					0	0	0.004672	0	0
SRCAP	10847	broad.mit.edu	37	16	30747894	30747894	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:30747894C>T	uc002dze.1	+	33	7342	c.6957C>T	c.(6955-6957)TTC>TTT	p.F2319F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.F2114F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2319	Glu-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCATGAAATTCCTGGAGGCCT	0.537000													52	52					0	0	0.014410	0	0
C16orf78	123970	broad.mit.edu	37	16	49430453	49430453	+	Missense_Mutation	SNP	A	G	G	rs142390164	by1000genomes	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:49430453A>G	uc002efr.2	+	4	557	c.514A>G	c.(514-516)ACC>GCC	p.T172A		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	172										central_nervous_system(1)	1						CCAGAGGGCAACCTTCATAAG	0.498000													23	47					0	0	0.003330	0	0
GPR56	9289	broad.mit.edu	37	16	57695737	57695737	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:57695737A>T	uc002emb.2	+	14	2103	c.1811A>T	c.(1810-1812)CAA>CTA	p.Q604L	GPR56_uc002ema.1_Missense_Mutation_p.Q429L|GPR56_uc002emc.2_Missense_Mutation_p.Q598L|GPR56_uc002emf.2_Missense_Mutation_p.Q598L|GPR56_uc010vhs.1_Missense_Mutation_p.Q604L|GPR56_uc002emd.2_Missense_Mutation_p.Q598L|GPR56_uc002eme.2_Missense_Mutation_p.Q598L|GPR56_uc010vht.1_Missense_Mutation_p.Q603L|GPR56_uc002emg.3_Missense_Mutation_p.Q598L|GPR56_uc010vhu.1_Missense_Mutation_p.Q423L	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	604	Cytoplasmic (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						CCCCACACCCAAAAGTGGTCA	0.582000													42	4					0	0	0.014410	0	0
CES3	23491	broad.mit.edu	37	16	67000216	67000216	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:67000216G>A	uc002eqt.2	+	7	962	c.889G>A	c.(889-891)GAA>AAA	p.E297K	CES3_uc010cdz.2_Missense_Mutation_p.E297K|CES3_uc010cea.2_RNA|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	297						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		TCAGCAGAAAGAAGGAGAAGA	0.567000													33	1					0	0	0.010818	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67314183	67314183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:67314183C>T	uc002eso.3	+	1	2771	c.236C>T	c.(235-237)TCG>TTG	p.S79L	PLEKHG4_uc002esp.3_5'UTR|PLEKHG4_uc002esq.3_Missense_Mutation_p.S79L|PLEKHG4_uc002esr.1_Intron|PLEKHG4_uc010cef.2_Missense_Mutation_p.S79L|PLEKHG4_uc002ess.3_Missense_Mutation_p.S79L|PLEKHG4_uc010ceg.2_Missense_Mutation_p.S79L	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	79					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		GCAGATGAGTCGGGGGATGCC	0.627000													22	1					0	0	0.003330	0	0
DUS2L	54920	broad.mit.edu	37	16	68083412	68083412	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:68083412T>C	uc002evi.2	+	4	280	c.131T>C	c.(130-132)CTG>CCG	p.L44P	DUS2L_uc002evj.2_Missense_Mutation_p.L44P|DUS2L_uc010vkk.1_Missense_Mutation_p.L44P|DUS2L_uc010cez.2_Intron	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	44					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		CTGCAGGAGCTGATCGACCTC	0.488000													3	128					0	0	0.004672	0	0
ESRP2	80004	broad.mit.edu	37	16	68265985	68265985	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:68265985C>G	uc010cfa.1	-	10	1237	c.1049G>C	c.(1048-1050)CGT>CCT	p.R350P	ESRP2_uc002evp.1_RNA|ESRP2_uc002evq.1_Missense_Mutation_p.R340P	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	350	RRM 1.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						TGACAAGAAACGAGCCACCTC	0.617000													11	13					0	0	0.010729	0	0
FTSJD1	55783	broad.mit.edu	37	16	71319468	71319468	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:71319468T>G	uc010cga.2	-	3	762	c.356A>C	c.(355-357)CAT>CCT	p.H119P	FTSJD1_uc002ezy.3_Missense_Mutation_p.H119P|FTSJD1_uc002ezz.3_Missense_Mutation_p.H119P	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	119						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						CAAAATCTCATGGAACTTACA	0.393000													31	1					0	0	0.010818	0	0
CLEC18B	497190	broad.mit.edu	37	16	74446934	74446934	+	Splice_Site	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr16:74446934C>T	uc002fct.2	-	5	876	c.676_splice	c.e5+1	p.E226_splice	CLEC18B_uc002fcu.2_Splice_Site_p.E226_splice|CLEC18B_uc010vmu.1_Splice_Site_p.E146_splice|CLEC18B_uc010vmv.1_5'Flank	NM_001011880	NP_001011880	Q6UXF7	CL18B_HUMAN	C-type lectin domain family 18, member B							extracellular region	sugar binding				0						CATGCACTCACCACAGAGCCC	0.607000													26	3					0	0	0.008361	0	0
ZZEF1	23140	broad.mit.edu	37	17	4015961	4015961	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:4015961G>A	uc002fxe.2	-	5	1072	c.1008C>T	c.(1006-1008)ATC>ATT	p.I336I	ZZEF1_uc002fxk.1_Silent_p.I336I	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	336	DOC.						calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CATTGCTGGGGATGTGCACAT	0.537000													16	30					0	0	0.004007	0	0
PFAS	5198	broad.mit.edu	37	17	8161174	8161174	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:8161174T>C	uc002gkr.2	+	10	1266	c.1125T>C	c.(1123-1125)TTT>TTC	p.F375F	PFAS_uc010vuv.1_5'UTR	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	375					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTGGGAATTTTGCCCGGCCCC	0.537000													29	27					0	0	0.006320	0	0
MYH8	4626	broad.mit.edu	37	17	10310224	10310224	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:10310224C>T	uc002gmm.2	-	18	2133	c.2038G>A	c.(2038-2040)GAA>AAA	p.E680K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	680	Actin-binding.|Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GTTTTGGTTTCATTGGGAATG	0.378000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				22	22					0	0	0.007291	0	0
MYH4	4622	broad.mit.edu	37	17	10360936	10360936	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:10360936G>A	uc002gmn.2	-	16	1809	c.1698C>T	c.(1696-1698)TTC>TTT	p.F566F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	566	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGGCTTCTGGAAGTTGTTGG	0.517000													41	44					0	0	0.008740	0	0
MYH2	4620	broad.mit.edu	37	17	10432570	10432570	+	Splice_Site	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:10432570C>T	uc010coi.2	-	26	3392	c.3264_splice	c.e26-1	p.K1088_splice	uc002gml.1_Intron|MYH2_uc002gmp.3_Splice_Site_p.K1088_splice|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AAACTCTTTCCTTTTAGAAAA	0.333000													18	21					0	0	0.007413	0	0
DNAH9	1770	broad.mit.edu	37	17	11784565	11784565	+	Silent	SNP	C	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:11784565C>A	uc002gne.2	+	55	10709	c.10641C>A	c.(10639-10641)CCC>CCA	p.P3547P	DNAH9_uc010coo.2_Silent_p.P2841P|DNAH9_uc002gnf.2_5'Flank	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3547	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AATACAATCCCAAGTTCCGGC	0.493000													16	68					6.94344e-10	1.20819e-09	0.006122	1	0
COX10	1352	broad.mit.edu	37	17	14110213	14110213	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:14110213C>T	uc002gof.3	+	7	1219	c.1015C>T	c.(1015-1017)CGG>TGG	p.R339W	COX10_uc010vvs.1_Missense_Mutation_p.R122W|COX10_uc010vvt.1_Missense_Mutation_p.R147W	NM_001303	NP_001294	Q12887	COX10_HUMAN	heme A:farnesyltransferase precursor	339					heme a biosynthetic process|heme O biosynthetic process|respiratory chain complex IV assembly	integral to membrane|mitochondrial membrane	protoheme IX farnesyltransferase activity				0		all_lung(20;0.06)|Lung SC(565;0.168)		UCEC - Uterine corpus endometrioid carcinoma (92;0.106)		AGACTACTCCCGGGGCGGCTA	0.672000													44	39					0	0	0.014410	0	0
RAI1	10743	broad.mit.edu	37	17	17697373	17697373	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:17697373C>T	uc002grm.2	+	3	1580	c.1111C>T	c.(1111-1113)CCC>TCC	p.P371S	RAI1_uc002grn.1_Missense_Mutation_p.P371S	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	371						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GGAGAACTTTCCCTACAGCCA	0.652000													58	79					0	0	0.014410	0	0
NOS2	4843	broad.mit.edu	37	17	26106012	26106012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:26106012C>T	uc002gzu.2	-	10	1339	c.1075G>A	c.(1075-1077)GTG>ATG	p.V359M	NOS2_uc010crh.1_Missense_Mutation_p.V359M|NOS2_uc010wab.1_Missense_Mutation_p.V359M	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	359					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	AGGCCGCCCACCTCAAGCAGC	0.562000													33	47					0	0	0.013726	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613814	27613815	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:27613814_27613815GG>AA	uc002hdy.3	-	2	1286_1287	c.1197_1198CC>TT	c.(1195-1200)TCCCAG>TCTTAG	p.Q400*	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	400	Ser-rich.					nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			ATAGGGACCTGGGATAAGCGAC	0.446000													36	50					0	0	0.004672	0	0
SUZ12	23512	broad.mit.edu	37	17	30303584	30303584	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:30303584G>A	uc002hgs.2	+	8	1090	c.868G>A	c.(868-870)GAT>AAT	p.D290N	SUZ12_uc002hgt.2_Missense_Mutation_p.D267N	NM_015355	NP_056170	Q15022	SUZ12_HUMAN	joined to JAZF1	290					negative regulation of cell differentiation|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|methylated histone residue binding|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.041)|Ovarian(249;0.182)|Breast(31;0.231)				AAATCGTGAGGATGGGGAAAA	0.333000			T	JAZF1	endometrial stromal tumours								20	16					0	0	0.014323	0	0
Unknown	0	broad.mit.edu	37	17	34236331	34236331	+	RNA	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:34236331G>A	uc010ctx.1	-	1		c.623C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		TCTTTTTCAGGGGTGTAGAAT	0.473000													16	41					0	0	0.004990	0	0
CCL14	6358	broad.mit.edu	37	17	34313661	34313661	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:34313661G>A	uc010wcr.1	-	1	104	c.25C>T	c.(25-27)CCC>TCC	p.P9S	CCL14_uc010wcq.1_Missense_Mutation_p.P9S|CCL14_uc002hkn.2_RNA|CCL14-CCL15_uc010wcs.1_RNA|CCL14-CCL15_uc010wct.1_RNA|uc002hkq.2_RNA	NM_032963	NP_116739	Q16627	CCL14_HUMAN	chemokine (C-C motif) ligand 14 isoform 1	9					cellular calcium ion homeostasis|immune response|positive regulation of cell proliferation	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGGAAGAAGGGAATGGCAGCC	0.567000													24	32					0	0	0.003954	0	0
KRT25	147183	broad.mit.edu	37	17	38907211	38907211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:38907211C>T	uc002hve.2	-	5	1013	c.952G>A	c.(952-954)GCC>ACC	p.A318T		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	318	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				CATACCGTGGCTAGGAGAGAC	0.418000													43	35					0	0	0.014410	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274365	39274365	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:39274365C>T	uc002hvz.2	-	1	242	c.203G>A	c.(202-204)AGA>AAA	p.R68K		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	68	9.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GATGCAGCATCTGGGGCGGCA	0.627000													22	38					0	0	0.012319	0	0
KRT13	3860	broad.mit.edu	37	17	39659341	39659341	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:39659341C>T	uc002hwu.1	-	4	808	c.745G>A	c.(745-747)GAA>AAA	p.E249K	KRT13_uc002hwv.1_Missense_Mutation_p.E249K|KRT13_uc002hww.2_Missense_Mutation_p.E142K|KRT13_uc010wfr.1_Missense_Mutation_p.E142K|KRT13_uc010cxo.2_Missense_Mutation_p.E249K|KRT13_uc002hwx.1_Missense_Mutation_p.E237K	NM_153490	NP_705694	P13646	K1C13_HUMAN	keratin 13 isoform a	249	Coil 1B.|Rod.				epidermis development	intermediate filament	structural molecule activity			ovary(2)|skin(2)|pancreas(1)	5		Breast(137;0.000286)				TTGCTAAATTCCTTCATCTCC	0.567000													108	125					0	0	0.014410	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42272039	42272039	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:42272039G>A	uc002iga.2	-	11	832	c.741C>T	c.(739-741)GTC>GTT	p.V247V	ATXN7L3_uc010wiv.1_Silent_p.V29V|ATXN7L3_uc002ifz.2_Silent_p.V254V	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	247	SCA7.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CCTCTGGAAGGACACTGGAAA	0.567000													22	33					0	0	0.002780	0	0
SCRN2	90507	broad.mit.edu	37	17	45916883	45916883	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:45916883G>A	uc002imd.2	-	4	609	c.483C>T	c.(481-483)TTC>TTT	p.F161F	SCRN2_uc002imc.2_Silent_p.F169F|SCRN2_uc002imf.2_Silent_p.F161F|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	161					proteolysis		dipeptidase activity			ovary(1)	1						CAGCCAGCAGGAAGGTGCTAT	0.612000													75	127					0	0	0.014410	0	0
SPAG9	9043	broad.mit.edu	37	17	49052209	49052209	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:49052209G>A	uc002itc.2	-	28	3832	c.3623C>T	c.(3622-3624)CCC>CTC	p.P1208L	SPAG9_uc002itb.2_Missense_Mutation_p.P1194L|SPAG9_uc002itd.2_Missense_Mutation_p.P1198L|SPAG9_uc002ita.2_Missense_Mutation_p.P1064L	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	1208					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			TGAACAATAGGGTATAAATGT	0.438000													33	21					0	0	0.010818	0	0
LPO	4025	broad.mit.edu	37	17	56344852	56344852	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:56344852G>A	uc002ivt.2	+	12	2152	c.1836G>A	c.(1834-1836)GGG>GGA	p.G612G	LPO_uc010wns.1_Silent_p.G553G|LPO_uc010dcp.2_Silent_p.G529G|LPO_uc010dcq.2_Silent_p.G283G|LPO_uc010dcr.2_Silent_p.G175G	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	612					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						TCTGGATAGGGGCCATTGCTG	0.577000													19	71					0	0	0.012319	0	0
BPTF	2186	broad.mit.edu	37	17	65914951	65914951	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:65914951A>T	uc002jgf.2	+	12	5486	c.5425A>T	c.(5425-5427)ACA>TCA	p.T1809S	BPTF_uc002jge.2_Missense_Mutation_p.T1935S	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1935					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GACTACACGGACAGGTAAGGG	0.368000													122	47					0	0	0.014410	0	0
ABCA9	10350	broad.mit.edu	37	17	67028394	67028394	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:67028394G>A	uc002jhu.2	-	10	1443	c.1300C>T	c.(1300-1302)CCC>TCC	p.P434S	ABCA9_uc010dez.2_Missense_Mutation_p.P434S	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	434					transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					AAAAACAAGGGAGAACATCGA	0.443000													23	19					0	0	0.004656	0	0
CASKIN2	57513	broad.mit.edu	37	17	73498951	73498951	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:73498951C>T	uc002joc.2	-	18	2754	c.2204G>A	c.(2203-2205)GGC>GAC	p.G735D	CASKIN2_uc010wsc.1_Missense_Mutation_p.G653D	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	735	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCGCTCTGTGCCCTCTGGGAG	0.657000													12	48					0	0	0.001855	0	0
CBX4	8535	broad.mit.edu	37	17	77811688	77811688	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr17:77811688C>A	uc002jxe.2	-	3	290	c.127G>T	c.(127-129)GAA>TAA	p.E43*		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	43	Chromo.|Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			TCCTCCGGTTCCCACGTGTTA	0.567000													10	7					4.68919e-08	8.14232e-08	0.008291	1	0
SMCHD1	23347	broad.mit.edu	37	18	2762185	2762185	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:2762185G>A	uc002klm.3	+	36	4706	c.4517G>A	c.(4516-4518)CGC>CAC	p.R1506H	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1506					chromosome organization		ATP binding				0						TCAAATGTTCGCTCAGTTGCC	0.373000													29	31					0	0	0.007291	0	0
DSC2	1824	broad.mit.edu	37	18	28667687	28667687	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:28667687G>A	uc002kwl.3	-	6	1174	c.720C>T	c.(718-720)TAC>TAT	p.Y240Y	DSC2_uc002kwk.3_Silent_p.Y240Y	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	240	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TAAAAATTGGGTAGTTATCAT	0.343000													23	24					0	0	0.014323	0	0
DCC	1630	broad.mit.edu	37	18	50592416	50592416	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:50592416G>A	uc002lfe.1	+	7	1728	c.1141G>A	c.(1141-1143)GGA>AGA	p.G381R	DCC_uc010xdr.1_Missense_Mutation_p.G229R|DCC_uc010dpf.1_Missense_Mutation_p.G36R	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	381	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TTTTCCCTAGGGAGGAAGCAA	0.408000													17	24					0	0	0.006122	0	0
ZNF407	55628	broad.mit.edu	37	18	72589159	72589159	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:72589159T>C	uc002llw.2	+	4	4941	c.4884T>C	c.(4882-4884)TTT>TTC	p.F1628F	ZNF407_uc010dqu.1_Silent_p.F1628F	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1628	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GCAGGAAATTTACATGCCACT	0.512000													28	38					0	0	0.007291	0	0
C18orf22	79863	broad.mit.edu	37	18	77797460	77797460	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:77797460C>T	uc002lns.2	+	3	470	c.332C>T	c.(331-333)CCT>CTT	p.P111L	C18orf22_uc010drh.2_Missense_Mutation_p.P111L|C18orf22_uc010dri.1_Intron	NM_024805	NP_079081	Q8N0V3	RBFA_HUMAN	hypothetical protein LOC79863 precursor	111					rRNA processing	mitochondrion					0		all_cancers(4;3.21e-14)|all_epithelial(4;7.11e-09)|all_lung(4;0.00366)|Lung NSC(4;0.00683)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0545)|all_hematologic(56;0.15)|Melanoma(33;0.2)		OV - Ovarian serous cystadenocarcinoma(15;6.46e-08)|BRCA - Breast invasive adenocarcinoma(31;0.00376)		CTGTGTACCCCTGAAGTGAGT	0.547000													35	73					0	0	0.005524	0	0
ADNP2	22850	broad.mit.edu	37	18	77895923	77895923	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr18:77895923C>T	uc002lnw.2	+	4	3082	c.2627C>T	c.(2626-2628)ACC>ATC	p.T876I		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	876	C2H2-type 4.				cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CGAGTGTCCACCTGCCCCTTT	0.587000													32	28					0	0	0.012213	0	0
ATCAY	85300	broad.mit.edu	37	19	3907814	3907814	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:3907814C>T	uc002lyy.3	+	5	871	c.441C>T	c.(439-441)AGC>AGT	p.S147S	ATCAY_uc010xhz.1_Silent_p.S153S|ATCAY_uc010dts.2_5'Flank	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	147					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		AGGACGGCAGCGCCGCCAACG	0.642000													22	38					0	0	0.003330	0	0
CLPP	8192	broad.mit.edu	37	19	6366267	6366267	+	Splice_Site	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:6366267A>T	uc002mem.1	+	5	679	c.556_splice	c.e5-2	p.G186_splice	CLPP_uc002men.1_5'UTR	NM_006012	NP_006003	Q16740	CLPP_HUMAN	caseinolytic peptidase, ATP-dependent,						proteolysis	mitochondrial matrix	ATP binding|protein binding|serine-type endopeptidase activity			ovary(1)	1						GACGTCCCTCAGGGCCAAGCC	0.582000													7	6					0	0	0.001984	0	0
MYO1F	4542	broad.mit.edu	37	19	8587285	8587285	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:8587285C>T	uc002mkg.2	-	27	3310	c.3196G>A	c.(3196-3198)GAG>AAG	p.E1066K		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	1066	SH3.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TCAATGACCTCGTTCACGTTG	0.537000													19	24					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9057936	9057936	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:9057936G>A	uc002mkp.2	-	3	29714	c.29510C>T	c.(29509-29511)ACC>ATC	p.T9837I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9839	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATGGTTATGGTTGTTTCTGA	0.473000													20	34					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	9088904	9088904	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:9088904T>C	uc002mkp.2	-	1	3115	c.2911A>G	c.(2911-2913)AGT>GGT	p.S971G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	971	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATCTGGGACTAGTCTCTGGC	0.463000													94	139					0	0	0.014410	0	0
OR7D2	162998	broad.mit.edu	37	19	9296981	9296981	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:9296981C>T	uc002mkz.1	+	1	712	c.524C>T	c.(523-525)CCA>CTA	p.P175L		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	175	Extracellular (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TTTGAAATTCCACATTTTTTC	0.458000													55	68					0	0	0.014410	0	0
PDE4A	5141	broad.mit.edu	37	19	10565554	10565554	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:10565554G>A	uc002moj.2	+	7	941	c.833G>A	c.(832-834)AGG>AAG	p.R278K	PDE4A_uc002mok.2_Missense_Mutation_p.R252K|PDE4A_uc002mol.2_Missense_Mutation_p.R217K|PDE4A_uc002mom.2_Missense_Mutation_p.R39K|PDE4A_uc002mon.2_5'UTR	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	278					signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	GAAATGAGCAGGTCCGGAAAC	0.517000													48	35					0	0	0.014410	0	0
ZNF700	90592	broad.mit.edu	37	19	12060344	12060344	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:12060344C>T	uc002msu.2	+	4	1631	c.1505C>T	c.(1504-1506)CCC>CTC	p.P502L	ZNF700_uc010xme.1_Missense_Mutation_p.P520L|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	502	C2H2-type 10; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATAAGAATGCCCTCTGGAGAA	0.383000													25	22					0	0	0.006320	0	0
MAST1	22983	broad.mit.edu	37	19	12969541	12969541	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:12969541G>A	uc002mvm.2	+	12	1482	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	MAST1_uc002mvk.2_Missense_Mutation_p.E448K	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	452	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CATGGTCATGGAATATGTGGA	0.627000													8	19					0	0	0.003080	0	0
CYP4F22	126410	broad.mit.edu	37	19	15651519	15651519	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:15651519C>T	uc002nbh.3	+	8	1097	c.930C>T	c.(928-930)CTC>CTT	p.L310L		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	310						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						ATGTGCTGCTCCTGGCCAGGG	0.582000													19	13					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	19	15884920	15884920	+	RNA	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:15884920G>A	uc002nbo.2	-	3		c.410C>T			uc010xor.1_Silent_p.L48L					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		TAGGGTTTCAGGATGTTGAAA	0.527000													7	9					0	0	0.003080	0	0
OR10H1	26539	broad.mit.edu	37	19	15918279	15918279	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:15918279C>T	uc002nbq.2	-	1	658	c.569G>A	c.(568-570)GGA>GAA	p.G190E		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CACATCGTCTCCACAGGCCAA	0.562000													34	44					0	0	0.010818	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799109	16799109	+	Missense_Mutation	SNP	C	T	T	rs147713228		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:16799109C>T	uc002nes.2	+	6	918	c.827C>T	c.(826-828)TCG>TTG	p.S276L		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	276	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						GCTCAGCATTCGGCCATGCCC	0.642000													49	35					0	0	0.014410	0	0
MAST3	23031	broad.mit.edu	37	19	18260381	18260381	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:18260381C>G	uc002nhz.3	+	27	3775	c.3775C>G	c.(3775-3777)CGC>GGC	p.R1259G		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	1259							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CCTGTCCGAGCGCCGAGACTC	0.692000													5	6					0	0	0.000602	0	0
ZNF676	163223	broad.mit.edu	37	19	22363802	22363802	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:22363802G>A	uc002nqs.1	-	3	1035	c.717C>T	c.(715-717)ATC>ATT	p.I239I		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	239	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				GTTTAGTAAGGATTGAGGATC	0.353000													6	21					0	0	0.001168	0	0
FCGBP	8857	broad.mit.edu	37	19	40368845	40368845	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:40368845G>A	uc002omp.3	-	28	12511	c.12503C>T	c.(12502-12504)TCC>TTC	p.S4168F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4168	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTCGGCCACGGAGACAGGCAA	0.622000													49	193					0	0	0.014410	0	0
CEACAM4	1089	broad.mit.edu	37	19	42133303	42133304	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:42133303_42133304CC>TT	uc002orh.1	-	1	139_140	c.28_29GG>AA	c.(28-30)GGA>AAA	p.G10K	CEACAM4_uc010xwd.1_Missense_Mutation_p.G10K	NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	10						integral to plasma membrane|membrane fraction					0						CCTGTGCCCTCCACGGGGAGCG	0.649000													9	20					0	0	0.004672	0	0
ATP1A3	478	broad.mit.edu	37	19	42480592	42480592	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:42480592G>A	uc002osg.2	-	15	2224	c.2070C>T	c.(2068-2070)ATC>ATT	p.I690I	ATP1A3_uc010xwf.1_Silent_p.I701I|ATP1A3_uc010xwg.1_Silent_p.I660I|ATP1A3_uc010xwh.1_Silent_p.I703I|ATP1A3_uc002osh.2_Silent_p.I690I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	690	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CCTCCACAATGATGAGCTTCT	0.428000													21	32					0	0	0.003330	0	0
PSG6	5675	broad.mit.edu	37	19	43411108	43411108	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:43411108C>T	uc002ovj.1	-	5	1258	c.1206G>A	c.(1204-1206)AAG>AAA	p.K402K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Silent_p.K409K|PSG6_uc002ovi.2_Silent_p.K403K|PSG6_uc010xwk.1_Silent_p.K242K|PSG11_uc002ovk.1_Silent_p.K401K|PSG6_uc002ove.1_Silent_p.K192K|PSG6_uc002ovf.1_Silent_p.K309K|PSG6_uc002ovg.1_Silent_p.K402K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	402	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGGAGATTTCCTTGCCAGTGG	0.448000													77	125					0	0	0.014410	0	0
IRGQ	126298	broad.mit.edu	37	19	44096313	44096313	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:44096313G>A	uc002oww.2	-	2	1855	c.1737C>T	c.(1735-1737)TTC>TTT	p.F579F	IRGQ_uc010eiv.2_Silent_p.F579F	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	579	Ala-rich.						protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				CAGGCCACAGGAAGGAGAGAG	0.711000													6	12					0	0	0.001168	0	0
ZNF283	284349	broad.mit.edu	37	19	44352174	44352174	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:44352174T>C	uc002oxr.3	+	7	1689	c.1421T>C	c.(1420-1422)CTT>CCT	p.L474P	ZNF283_uc002oxp.3_Missense_Mutation_p.L335P	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	474	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				GGTTCAAGCCTTGTTAAACAT	0.413000													34	43					0	0	0.004878	0	0
CEACAM19	56971	broad.mit.edu	37	19	45185854	45185854	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:45185854C>T	uc002ozo.3	+	7	1288	c.808C>T	c.(808-810)CCA>TCA	p.P270S	CEACAM19_uc002ozp.3_Missense_Mutation_p.P270S	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	270	Cytoplasmic (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				GCCCACACCCCCACACCTGCA	0.587000													15	34					0	0	0.004007	0	0
ZC3H4	23211	broad.mit.edu	37	19	47575047	47575047	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:47575047G>A	uc002pga.3	-	13	2172	c.2134C>T	c.(2134-2136)CTG>TTG	p.L712L	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	712							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GCATCCCCCAGGAGTCCGGGC	0.577000													17	29					0	0	0.004007	0	0
SHANK1	50944	broad.mit.edu	37	19	51200373	51200373	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:51200373C>T	uc002psx.1	-	14	1963	c.1944G>A	c.(1942-1944)ATG>ATA	p.M648I		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	648					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CAATCCCATCCATTAAGCTTC	0.468000													53	48					0	0	0.014410	0	0
KLK12	43849	broad.mit.edu	37	19	51537262	51537262	+	Silent	SNP	G	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:51537262G>C	uc002pvg.1	-	2	291	c.171C>G	c.(169-171)GTC>GTG	p.V57V	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Missense_Mutation_p.S34C|KLK12_uc010ycr.1_Missense_Mutation_p.S34C|KLK12_uc010ycs.1_Missense_Mutation_p.S34C|KLK12_uc002pvh.1_Silent_p.V57V|KLK12_uc002pvi.1_Silent_p.V57V|KLK12_uc002pvj.1_Silent_p.V57V	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	57	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		CCGCTGTGAGGACCCACCTGT	0.637000													9	4					0	0	0.010729	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52002831	52002831	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:52002831G>A	uc002pwx.1	-	3	1004	c.948C>T	c.(946-948)TCC>TCT	p.S316S	SIGLEC12_uc002pww.1_Silent_p.S198S|SIGLEC12_uc010eoy.1_Silent_p.S43S	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	316	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TGGGGTCCAGGGAGGACACGG	0.667000													21	23					0	0	0.012319	0	0
FPR2	2358	broad.mit.edu	37	19	52272498	52272498	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:52272498C>T	uc002pxr.2	+	2	632	c.587C>T	c.(586-588)ACC>ATC	p.T196I	FPR2_uc002pxs.3_Missense_Mutation_p.T196I|FPR2_uc010epf.2_Missense_Mutation_p.T196I	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	196	Extracellular (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						GTGGCCATTACCATGCTGACA	0.493000													33	49					0	0	0.010818	0	0
NLRP12	91662	broad.mit.edu	37	19	54327341	54327341	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:54327341A>C	uc002qch.3	-	1	308	c.88T>G	c.(88-90)TTA>GTA	p.L30V	NLRP12_uc002qci.3_Missense_Mutation_p.L30V|NLRP12_uc002qcj.3_Missense_Mutation_p.L30V|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.L30V	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	30	DAPIN.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CCCAGGTATAACTTGAACTTC	0.602000													27	44					0	0	0.004656	0	0
NLRP9	338321	broad.mit.edu	37	19	56244087	56244087	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:56244087G>A	uc002qly.2	-	2	1138	c.1110C>T	c.(1108-1110)TCC>TCT	p.S370S		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	370	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		TTGTTAAAAAGGATGCATATA	0.438000													65	40					0	0	0.014410	0	0
NLRP11	204801	broad.mit.edu	37	19	56297047	56297047	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:56297047G>A	uc010ygf.1	-	12	3757	c.3046C>T	c.(3046-3048)CCC>TCC	p.P1016S	NLRP11_uc002qlz.2_Missense_Mutation_p.P863S|NLRP11_uc002qmb.2_Missense_Mutation_p.P917S|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	1016							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GACATTCTGGGAAATTTGAAA	0.373000													32	33					0	0	0.012213	0	0
NLRP11	204801	broad.mit.edu	37	19	56329286	56329286	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:56329286G>A	uc010ygf.1	-	4	966	c.255C>T	c.(253-255)ATC>ATT	p.I85I	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	85	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GTCTGCCAATGATCTTCCTAC	0.433000													50	50					0	0	0.014410	0	0
NLRP5	126206	broad.mit.edu	37	19	56572834	56572834	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:56572834C>T	uc002qmj.2	+	15	3543	c.3543C>T	c.(3541-3543)GTC>GTT	p.V1181V	NLRP5_uc002qmi.2_Silent_p.V1162V	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	1181						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGCCCCGAGTCGTAATTGACG	0.517000													38	29					0	0	0.005524	0	0
ZNF416	55659	broad.mit.edu	37	19	58087261	58087261	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:58087261G>A	uc002qpf.2	-	3	284	c.113C>T	c.(112-114)TCC>TTC	p.S38F	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	38	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		TTCTTCCTGGGAGAAGTAAAT	0.532000													51	33					0	0	0.014410	0	0
TRIM28	10155	broad.mit.edu	37	19	59057158	59057159	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr19:59057158_59057159CC>TT	uc002qtg.1	+	3	770_771	c.481_482CC>TT	c.(481-483)CCA>TTA	p.P161L	TRIM28_uc010eut.1_Intron|TRIM28_uc002qth.1_5'Flank	NM_005762	NP_005753	Q13263	TIF1B_HUMAN	tripartite motif-containing 28 protein	161	RBCC domain.|B box-type 1; atypical.				epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	nucleoplasm	chromo shadow domain binding|ligase activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0434)|all cancers(4;1.39e-13)|Epithelial(4;1.01e-10)|OV - Ovarian serous cystadenocarcinoma(4;2.34e-09)|GBM - Glioblastoma multiforme(193;0.0102)|Lung(386;0.179)		GGATAATGCCCCAGCCACCAGC	0.535000													38	30					0	0	0.004672	0	0
TPO	7173	broad.mit.edu	37	2	1488405	1488405	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:1488405G>A	uc002qww.2	+	9	1467	c.1376G>A	c.(1375-1377)GGA>GAA	p.G459E	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Missense_Mutation_p.G459E|TPO_uc002qwr.2_Missense_Mutation_p.G459E|TPO_uc002qwx.2_Missense_Mutation_p.G459E|TPO_uc010yio.1_Missense_Mutation_p.G286E|TPO_uc010yip.1_Missense_Mutation_p.G459E|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	459	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	AGGATCCTGGGACCCGAGGCC	0.592000													19	27					0	0	0.012319	0	0
C2orf39	92749	broad.mit.edu	37	2	26676285	26676285	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:26676285G>A	uc002rhg.2	+	14	1861	c.1787G>A	c.(1786-1788)GGA>GAA	p.G596E		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	596	Glu-rich.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					gagatggagggagaaaaggaa	0.348000													39	46					0	0	0.005524	0	0
OTOF	9381	broad.mit.edu	37	2	26702497	26702497	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:26702497C>T	uc002rhk.2	-	17	2064	c.1937G>A	c.(1936-1938)GGC>GAC	p.G646D	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	646	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGGGACAGGCCATCAACTTC	0.637000													32	32					0	0	0.004878	0	0
ZNF512	84450	broad.mit.edu	37	2	27824259	27824259	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:27824259C>T	uc002rla.2	+	7	706	c.619C>T	c.(619-621)CGT>TGT	p.R207C	ZNF512_uc010ylv.1_Missense_Mutation_p.R128C|ZNF512_uc010ylw.1_Missense_Mutation_p.R178C|ZNF512_uc002rlb.2_Missense_Mutation_p.R128C|ZNF512_uc010ylx.1_Missense_Mutation_p.R128C|ZNF512_uc002rlc.2_Missense_Mutation_p.R128C|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Missense_Mutation_p.R100C	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	207	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAAACAACTTCGTTCACTGGC	0.378000													60	54					0	0	0.014410	0	0
NRXN1	9378	broad.mit.edu	37	2	50573968	50573968	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:50573968G>A	uc010fbp.2	-	1	927	c.120C>T	c.(118-120)ACC>ACT	p.T40T	NRXN1_uc002rxb.3_Intron|NRXN1_uc010fbq.2_Intron|NRXN1_uc002rxe.3_Intron|NRXN1_uc002rxc.1_Intron	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	40					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GGCCGCTGAGGGTGAGCGGGA	0.542000													14	12					0	0	0.001855	0	0
BCL11A	53335	broad.mit.edu	37	2	60695964	60695964	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:60695964T>C	uc002sae.1	-	3	618	c.390A>G	c.(388-390)AAA>AAG	p.K130K	BCL11A_uc002sab.2_Silent_p.K130K|BCL11A_uc002sac.2_Silent_p.K130K|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_5'UTR|BCL11A_uc002saf.1_Intron	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	130	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			AGTGCAGAAGTTTATCTGTGA	0.453000			T	IGH@	B-CLL								315	259					0	0	0.014410	0	0
ATP6V1B1	525	broad.mit.edu	37	2	71189977	71189977	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:71189977C>T	uc002shj.2	+	9	943	c.856C>T	c.(856-858)CAT>TAT	p.H286Y	ATP6V1B1_uc010fdv.2_Missense_Mutation_p.H286Y|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.H244Y	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	286					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GTGTGAGAAGCATGTGCTGGT	0.577000													61	41					0	0	0.014410	0	0
ALMS1	7840	broad.mit.edu	37	2	73678215	73678215	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:73678215C>T	uc002sje.1	+	10	4675	c.4564C>T	c.(4564-4566)CCT>TCT	p.P1522S	ALMS1_uc002sjf.1_Missense_Mutation_p.P1478S|ALMS1_uc002sjg.2_Missense_Mutation_p.P908S|ALMS1_uc002sjh.1_Missense_Mutation_p.P908S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1520	21.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TATAACCTCTCCTTCCTACTC	0.488000													33	17					0	0	0.003271	0	0
DNAH6	1768	broad.mit.edu	37	2	84777072	84777072	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:84777072C>T	uc010fgb.2	+	9	1513	c.1376C>T	c.(1375-1377)GCT>GTT	p.A459V	DNAH6_uc002soo.2_Missense_Mutation_p.A38V|DNAH6_uc002sop.2_Missense_Mutation_p.A38V	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	459	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						ACGGTAAATGCTGTTAATTCG	0.353000													10	16					0	0	0.008291	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522786	95522786	+	RNA	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:95522786T>C	uc010fhp.2	-	1		c.35A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						CGGCGTCGCCTTTGACAGCTG	0.687000													4	85					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	2	96593016	96593016	+	RNA	SNP	C	A	A	rs79307257	by1000genomes	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:96593016C>A	uc002sva.1	-	9		c.389G>T			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		GAAACAGAATCTTTCTCATCA	0.318000													3	7					0.004672	0.00797893	0.004672	1	0
Unknown	0	broad.mit.edu	37	2	96593025	96593025	+	RNA	SNP	C	T	T	rs75189823	by1000genomes	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:96593025C>T	uc002sva.1	-	9		c.380G>A			uc010yug.1_RNA|uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		TCTTTCTCATCACTTGTAGCC	0.318000													3	7					0	0	0.004672	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459654	107459654	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:107459654G>A	uc002tdq.2	-	2	899	c.780C>T	c.(778-780)CGC>CGT	p.R260R	ST6GAL2_uc002tdr.2_Silent_p.R260R|ST6GAL2_uc002tds.3_Silent_p.R260R	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	260	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCGTCCGCACGCGCGCGCGGC	0.751000													4	3					0	0	0.009096	0	0
RGPD4	285190	broad.mit.edu	37	2	108496562	108496562	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:108496562A>G	uc010ywk.1	+	21	5145	c.5063A>G	c.(5062-5064)AAG>AGG	p.K1688R	RGPD4_uc002tdu.2_Missense_Mutation_p.K875R|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1688					intracellular transport		binding			skin(2)	2						GAGCAAATTAAGGTGAGATCA	0.453000													106	79					0	0	0.014410	0	0
SLC5A7	60482	broad.mit.edu	37	2	108604737	108604737	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:108604737C>T	uc002tdv.2	+	2	402	c.126C>T	c.(124-126)ATC>ATT	p.I42I	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Silent_p.I42I|SLC5A7_uc010ywn.1_Intron	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	42	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GCGAAGCCATCATAGTTGGTG	0.507000													24	36					0	0	0.003330	0	0
MERTK	10461	broad.mit.edu	37	2	112760692	112760692	+	Missense_Mutation	SNP	G	A	A	rs143925029		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:112760692G>A	uc002thk.1	+	12	1836	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K	MERTK_uc002thl.1_Missense_Mutation_p.E396K	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	572	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						AGTCAGTGAGGAACTACAAAA	0.303000													68	82					0	0	0.014410	0	0
IL1F6	27179	broad.mit.edu	37	2	113764228	113764228	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:113764228G>A	uc010yxr.1	+	3	178	c.178G>A	c.(178-180)GGG>AGG	p.G60R		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	60					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						GAAAGACAGAGGGAACCCCAT	0.522000													117	87					0	0	0.014410	0	0
WDR33	55339	broad.mit.edu	37	2	128520638	128520638	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:128520638C>T	uc002tpg.1	-	7	905	c.722G>A	c.(721-723)CGA>CAA	p.R241Q	WDR33_uc002tph.1_Missense_Mutation_p.R241Q	NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	241					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		ACACGTACCTCGGAGAATTCT	0.398000													22	36					0	0	0.012319	0	0
THSD7B	80731	broad.mit.edu	37	2	138169256	138169256	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:138169256G>A	uc002tva.1	+	13	2680	c.2680G>A	c.(2680-2682)GAA>AAA	p.E894K	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.E784K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TCCTTGTGATGAATTTATATC	0.458000													42	58					0	0	0.007835	0	0
LRP1B	53353	broad.mit.edu	37	2	141079626	141079626	+	Missense_Mutation	SNP	T	A	A	rs150003749		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:141079626T>A	uc002tvj.1	-	82	13518	c.12546A>T	c.(12544-12546)GAA>GAT	p.E4182D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4182	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCAAAGAAATTCGCATGCTA	0.383000										TSP Lung(27;0.18)			8	8					0	0	0.003080	0	0
LRP1B	53353	broad.mit.edu	37	2	141458189	141458189	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:141458189C>T	uc002tvj.1	-	41	7401	c.6429G>A	c.(6427-6429)GGG>GGA	p.G2143G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2143	Extracellular (Potential).|EGF-like 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAACATTGGTCCCTAATGAAG	0.368000										TSP Lung(27;0.18)			6	14					0	0	0.001984	0	0
ZEB2	9839	broad.mit.edu	37	2	145147503	145147503	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:145147503G>A	uc002tvu.2	-	10	3640	c.3160C>T	c.(3160-3162)CCC>TCC	p.P1054S	ZEB2_uc002tvv.2_Missense_Mutation_p.P1048S|ZEB2_uc010zbm.1_Missense_Mutation_p.P1025S|ZEB2_uc010fnp.2_Intron	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	1054						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		CACTGATAGGGCTTCTCGCCC	0.507000													32	45					0	0	0.003271	0	0
SCN1A	6323	broad.mit.edu	37	2	166898891	166898891	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:166898891G>A	uc010zcz.1	-	12	2072	c.2054C>T	c.(2053-2055)TCT>TTT	p.S685F	SCN1A_uc002udo.3_Missense_Mutation_p.S565F|SCN1A_uc010fpk.2_Missense_Mutation_p.S537F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	696						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AACGTGGAAAGAACTTGACCT	0.363000													17	28					0	0	0.004990	0	0
XIRP2	129446	broad.mit.edu	37	2	168101437	168101437	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:168101437G>A	uc002udx.2	+	8	3553	c.3535G>A	c.(3535-3537)GGA>AGA	p.G1179R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.G1004R|XIRP2_uc010fpq.2_Missense_Mutation_p.G957R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1004					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGCATACAAGGAGAAGAAGT	0.383000													8	11					0	0	0.003080	0	0
HOXD11	3237	broad.mit.edu	37	2	176973654	176973654	+	Silent	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:176973654G>T	uc002uki.2	+	2	801	c.801G>T	c.(799-801)CGG>CGT	p.R267R	HOXD11_uc010fqx.2_RNA	NM_021192	NP_067015	P31277	HXD11_HUMAN	homeobox D11	267	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		AGCGGTCCCGGAAAAAGCGCT	0.587000			T	NUP98	AML								68	44					8.78217e-53	1.53781e-52	0.014410	1	0
TTN	7273	broad.mit.edu	37	2	179434020	179434020	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179434020G>A	uc010zfg.1	-	275	69359	c.69135C>T	c.(69133-69135)ATC>ATT	p.I23045I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I16740I|TTN_uc010zfi.1_Silent_p.I16673I|TTN_uc010zfj.1_Silent_p.I16548I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23972							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTCTTTGGTGATTTCTGTGA	0.408000													34	63					0	0	0.007835	0	0
TTN	7273	broad.mit.edu	37	2	179446810	179446810	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179446810C>T	uc010zfg.1	-	264	58806	c.58582G>A	c.(58582-58584)GAA>AAA	p.E19528K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E13223K|TTN_uc010zfi.1_Missense_Mutation_p.E13156K|TTN_uc010zfj.1_Missense_Mutation_p.E13031K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20455							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCTGGGTTTCCCGCTTTTCA	0.438000													12	51					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179465767	179465767	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179465767C>T	uc010zfg.1	-	237	48384	c.48160G>A	c.(48160-48162)GAC>AAC	p.D16054N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D9749N|TTN_uc010zfi.1_Missense_Mutation_p.D9682N|TTN_uc010zfj.1_Missense_Mutation_p.D9557N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16981							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGTAGGGTCCCATGCAAGG	0.493000													20	11					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179596978	179596978	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179596978A>T	uc010zfg.1	-	54	13210	c.12986T>A	c.(12985-12987)ATT>AAT	p.I4329N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.I990N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5256							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTATTTTAATTGGAGGGGT	0.418000													14	21					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179636046	179636046	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179636046C>T	uc010zfg.1	-	34	8232	c.8008G>A	c.(8008-8010)GAT>AAT	p.D2670N	TTN_uc010zfh.1_Missense_Mutation_p.D2624N|TTN_uc010zfi.1_Missense_Mutation_p.D2624N|TTN_uc010zfj.1_Missense_Mutation_p.D2624N|TTN_uc002unb.2_Missense_Mutation_p.D2670N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2670							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTGGCCATCAGACTCACTT	0.448000													16	29					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179640316	179640316	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:179640316C>T	uc010zfg.1	-	28	6499	c.6275G>A	c.(6274-6276)GGA>GAA	p.G2092E	TTN_uc010zfh.1_Missense_Mutation_p.G2046E|TTN_uc010zfi.1_Missense_Mutation_p.G2046E|TTN_uc010zfj.1_Missense_Mutation_p.G2046E|TTN_uc002unb.2_Missense_Mutation_p.G2092E|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2092							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCATCAGATCCTTGGCCCAC	0.458000													11	16					0	0	0.013537	0	0
DNAJC10	54431	broad.mit.edu	37	2	183616503	183616504	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:183616503_183616504CT>TA	uc002uow.1	+	15	1840_1841	c.1425_1426CT>TA	c.(1423-1428)TTCTTT>TTTATT	p.F476I	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.F430I|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	476	Thioredoxin 2.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TTGTTGATTTCTTTGCCCCCGT	0.366000													55	117					0	0	0.004672	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798432	185798432	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:185798432C>T	uc002uph.2	+	3	952	c.358C>T	c.(358-360)CTG>TTG	p.L120L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	120						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CCTGCACAAGCTGGCTGAGCT	0.403000													6	11					0	0	0.001984	0	0
COL5A2	1290	broad.mit.edu	37	2	189927614	189927614	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:189927614G>A	uc002uqk.2	-	29	2229	c.1954C>T	c.(1954-1956)CCT>TCT	p.P652S	COL5A2_uc010frx.2_Missense_Mutation_p.P228S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	652					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGACCAGAAGGACCAACTTCA	0.383000													26	25					0	0	0.006320	0	0
MYO1B	4430	broad.mit.edu	37	2	192194691	192194691	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:192194691C>T	uc010fsg.2	+	4	537	c.282C>T	c.(280-282)TCC>TCT	p.S94S	MYO1B_uc002usq.2_Silent_p.S94S|MYO1B_uc002usr.2_Silent_p.S94S|MYO1B_uc002uss.1_Silent_p.S94S	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	94	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			CATACAGATCCCTACGAGATC	0.413000													106	99					0	0	0.014410	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398000			Mis		gliobastoma 								29	41					0	0	0.012213	0	0
COL4A4	1286	broad.mit.edu	37	2	227963478	227963478	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:227963478C>T	uc010zlt.1	-	19	1790	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	379	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCTGTTTCTCCATAGCGGCC	0.527000													34	37					0	0	0.003271	0	0
TM4SF20	79853	broad.mit.edu	37	2	228228493	228228493	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:228228493C>T	uc002vpb.2	-	4	675	c.637G>A	c.(637-639)GGT>AGT	p.G213S		NM_024795	NP_079071	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	213	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		CCAAGGAAACCGATGACTATC	0.378000													41	48					0	0	0.013114	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882709	228882709	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:228882709C>T	uc002vpq.2	-	7	2908	c.2861G>A	c.(2860-2862)GGA>GAA	p.G954E	SPHKAP_uc002vpp.2_Missense_Mutation_p.G954E|SPHKAP_uc010zlx.1_Missense_Mutation_p.G954E	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	954						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGGTTGTTTTCCACTGGAGTT	0.493000													51	53					0	0	0.014410	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652314	234652314	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:234652314G>A	uc002vuz.2	-	1	348	c.249C>T	c.(247-249)TTC>TTT	p.F83F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	83					protein folding		heat shock protein binding|unfolded protein binding				0						AGGGGTCCTCGAAGGGCCTGC	0.637000													67	70					0	0	0.014410	0	0
COL6A3	1293	broad.mit.edu	37	2	238277429	238277429	+	Silent	SNP	G	A	A	rs147215386		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:238277429G>A	uc002vwl.2	-	10	4962	c.4677C>T	c.(4675-4677)TTC>TTT	p.F1559F	COL6A3_uc002vwo.2_Silent_p.F1353F|COL6A3_uc010znj.1_Silent_p.F952F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1559	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TCACCTGGGCGAACCTGGACA	0.572000													50	68					0	0	0.014410	0	0
OR6B3	150681	broad.mit.edu	37	2	240984587	240984587	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:240984587C>T	uc010zoe.1	-	1	903	c.903G>A	c.(901-903)TTG>TTA	p.L301L	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		AGGCTTTTTTCAAGGCATTCT	0.488000													111	115					0	0	0.014410	0	0
THAP4	51078	broad.mit.edu	37	2	242572709	242572709	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr2:242572709G>A	uc002wbt.2	-	2	1086	c.863C>T	c.(862-864)TCA>TTA	p.S288L		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	288							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		CGCGGTAAGTGATGAGCTGGG	0.647000													59	97					0	0	0.014410	0	0
TGM3	7053	broad.mit.edu	37	20	2308845	2308845	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:2308845C>T	uc002wfx.3	+	9	1264	c.1167C>T	c.(1165-1167)ATC>ATT	p.I389I		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	389					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TGCCCTTTATCTTCGCGGAGG	0.557000													52	51					0	0	0.014410	0	0
SLC4A11	83959	broad.mit.edu	37	20	3211616	3211616	+	Silent	SNP	G	A	A	rs139297339		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:3211616G>A	uc002wig.2	-	9	1227	c.1179C>T	c.(1177-1179)TTC>TTT	p.F393F	SLC4A11_uc010zqe.1_Silent_p.F420F|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.F377F	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	393	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						TGAGAGACCCGAAAGCGATGG	0.627000													50	41					0	0	0.014410	0	0
ISM1	140862	broad.mit.edu	37	20	13279729	13279729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:13279729C>T	uc010gce.1	+	6	1024	c.1018C>T	c.(1018-1020)CGC>TGC	p.R340C	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	340	AMOP.					extracellular region					0						CATCTTCGACCGCATCAAGCG	0.592000													7	35					0	0	0.008291	0	0
RIN2	54453	broad.mit.edu	37	20	19956051	19956051	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:19956051T>C	uc002wro.1	+	7	1418	c.1382T>C	c.(1381-1383)CTG>CCG	p.L461P	RIN2_uc010gcu.1_Intron|RIN2_uc010gcv.1_Missense_Mutation_p.L255P	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	461					endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						AACAGCAGCCTGGAGGACTAC	0.582000													3	49					0	0	0.000602	0	0
PLK1S1	55857	broad.mit.edu	37	20	21142672	21142672	+	Missense_Mutation	SNP	C	T	T	rs6075771		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:21142672C>T	uc002wsb.2	+	5	699	c.566C>T	c.(565-567)CCT>CTT	p.P189L	PLK1S1_uc010zsh.1_Missense_Mutation_p.P86L|PLK1S1_uc010zsi.1_Missense_Mutation_p.P56L|PLK1S1_uc010zsj.1_RNA|uc002wsc.2_Intron|PLK1S1_uc002wsd.2_RNA	NM_018474	NP_060944	Q2M2Z5	KIZ_HUMAN	polo-like kinase 1 substrate 1 isoform 1	189					spindle organization	centrosome	protein kinase binding				0						TTTTCAATTCCTGACCCACAT	0.448000													12	25					0	0	0.001855	0	0
COX4I2	84701	broad.mit.edu	37	20	30231300	30231300	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:30231300G>A	uc002wwj.1	+	4	416	c.341G>A	c.(340-342)GGA>GAA	p.G114E	COX4I2_uc002wwi.2_Missense_Mutation_p.G114E	NM_032609	NP_115998	Q96KJ9	COX42_HUMAN	cytochrome c oxidase subunit IV isoform 2	114					cellular respiration		cytochrome-c oxidase activity			ovary(1)	1	all_cancers(5;7.12e-06)|Lung NSC(7;3.95e-06)|all_epithelial(3;4.36e-06)|all_lung(7;6.68e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Epithelial(4;1.01e-05)|all cancers(5;9.46e-05)|OV - Ovarian serous cystadenocarcinoma(3;0.00121)|Colorectal(19;0.0055)|COAD - Colon adenocarcinoma(19;0.0264)			TTCTTCATTGGATTCGCAGCT	0.562000													33	33					0	0	0.012213	0	0
CPNE1	8904	broad.mit.edu	37	20	34214185	34214185	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:34214185G>A	uc002xdf.2	-	18	1955	c.1592C>T	c.(1591-1593)CCT>CTT	p.P531L	CPNE1_uc002xdc.2_Missense_Mutation_p.P193L|CPNE1_uc010zvj.1_Missense_Mutation_p.P536L|CPNE1_uc002xde.2_Missense_Mutation_p.P507L|CPNE1_uc002xdg.2_Missense_Mutation_p.P475L|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.P531L|CPNE1_uc002xdi.2_Missense_Mutation_p.P531L|CPNE1_uc002xdj.2_Missense_Mutation_p.P531L|CPNE1_uc002xdk.2_Missense_Mutation_p.P531L|CPNE1_uc002xdl.2_Missense_Mutation_p.P531L|CPNE1_uc002xdm.2_Missense_Mutation_p.P531L	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	531					lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGCCTGTGCAGGATCCTTGGC	0.622000													93	131					0	0	0.014410	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354398	45354398	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:45354398C>T	uc002xsl.2	+	2	820	c.723C>T	c.(721-723)TTC>TTT	p.F241F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	241	Helical; Name=7; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGGTGCTCTTCCAGCAACTAA	0.632000													52	85					0	0	0.014410	0	0
SALL4	57167	broad.mit.edu	37	20	50418919	50418919	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:50418919T>A	uc002xwh.3	-	1	130	c.29A>T	c.(28-30)CAG>CTG	p.Q10L	SALL4_uc010gii.2_Missense_Mutation_p.Q10L|SALL4_uc002xwi.3_Missense_Mutation_p.Q10L	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	10					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GTTGATGTGCTGGGGTTTCGC	0.542000													42	52					0	0	0.014410	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870774	51870774	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:51870774G>A	uc002xwo.2	+	2	1733	c.777G>A	c.(775-777)AGG>AGA	p.R259R		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	259					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CAAAGCCCAGGAAAAGGGCTT	0.478000													16	26					0	0	0.004007	0	0
BCAS1	8537	broad.mit.edu	37	20	52583470	52583470	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:52583470G>A	uc002xws.2	-	9	1663	c.1325C>T	c.(1324-1326)TCT>TTT	p.S442F	BCAS1_uc010zza.1_Intron|BCAS1_uc010zzb.1_Missense_Mutation_p.S390F|BCAS1_uc010gim.2_Intron|BCAS1_uc002xwt.2_Missense_Mutation_p.S428F|BCAS1_uc010gil.1_Intron	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	442						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CGCCATCAGAGAGGTTCTTGG	0.428000													98	109					0	0	0.014410	0	0
ZBTB46	140685	broad.mit.edu	37	20	62407078	62407078	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr20:62407078C>T	uc002ygv.1	-	3	1376	c.1175G>A	c.(1174-1176)GGC>GAC	p.G392D	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CAGCAGGGAGCCGTCATCCCC	0.662000											OREG0026130	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	39					0	0	0.010818	0	0
UMODL1	89766	broad.mit.edu	37	21	43543053	43543053	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr21:43543053C>T	uc002zaf.1	+	17	2940	c.2940C>T	c.(2938-2940)CCC>CCT	p.P980P	UMODL1_uc002zad.1_Silent_p.P908P|UMODL1_uc002zae.1_Silent_p.P1036P|UMODL1_uc002zag.1_Silent_p.P1108P|UMODL1_uc002zal.1_5'UTR	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	980	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						AAGGCCTGCCCCAGCGGCTGA	0.637000													31	1					0	0	0.010818	0	0
XKR3	150165	broad.mit.edu	37	22	17264815	17264815	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:17264815C>T	uc002zlv.2	-	4	1172	c.1074G>A	c.(1072-1074)ATG>ATA	p.M358I	XKR3_uc011agf.1_Missense_Mutation_p.M358I	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	358	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ATACCAATATCATTATCACAT	0.403000													18	21					0	0	0.003954	0	0
TUBA8	51807	broad.mit.edu	37	22	18609239	18609239	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:18609239C>T	uc002znv.1	+	4	567	c.494C>T	c.(493-495)TCC>TTC	p.S165F	TUBA8_uc002znr.2_Missense_Mutation_p.S99F|TUBA8_uc002znw.1_Missense_Mutation_p.S189F|TUBA8_uc002znx.1_Missense_Mutation_p.S12F|TUBA8_uc002znu.1_3'UTR	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	165					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						GGCAAGAAATCCAAGCTGGAG	0.557000													55	80					0	0	0.014410	0	0
RIMBP3	85376	broad.mit.edu	37	22	20457900	20457900	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:20457900C>T	uc002zsd.3	-	1	3887	c.3402G>A	c.(3400-3402)AAG>AAA	p.K1134K		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			CCTCACAAACCTTAAGCCCAT	0.567000													7	52					0	0	0.003080	0	0
YDJC	150223	broad.mit.edu	37	22	21982731	21982731	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:21982731G>A	uc002zvb.2	-	5	985	c.948C>T	c.(946-948)CCC>CCT	p.P316P	YDJC_uc002zvc.2_RNA|YDJC_uc002zvd.2_3'UTR	NM_001017964	NP_001017964	A8MPS7	YDJC_HUMAN	YdjC homolog	316					carbohydrate metabolic process		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds				0	Colorectal(54;0.105)					GTTCCAGGAAGGGTTCCAGAG	0.617000													68	113					0	0	0.014410	0	0
PRAME	23532	broad.mit.edu	37	22	22892178	22892178	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:22892178A>G	uc002zwf.2	-	4	1079	c.923T>C	c.(922-924)TTC>TCC	p.F308S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Missense_Mutation_p.F292S|PRAME_uc010gtr.2_Missense_Mutation_p.F308S|PRAME_uc002zwg.2_Missense_Mutation_p.F308S|PRAME_uc002zwh.2_Missense_Mutation_p.F308S|PRAME_uc002zwi.2_Missense_Mutation_p.F308S|PRAME_uc002zwj.2_Missense_Mutation_p.F308S|PRAME_uc002zwk.2_Missense_Mutation_p.F308S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	308					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		GCCTCTAAGGAAAAATAAAGA	0.488000													28	25					0	0	0.005443	0	0
ADRBK2	157	broad.mit.edu	37	22	25961064	25961064	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:25961064G>A	uc003abx.3	+	1	204	c.57G>A	c.(55-57)AAG>AAA	p.K19K	ADRBK2_uc010gux.2_Silent_p.K19K|ADRBK2_uc003abw.2_5'UTR|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	19	N-terminal.						ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	CCATGGAGAAGAGCAAGGCGA	0.562000													11	18					0	0	0.003163	0	0
HORMAD2	150280	broad.mit.edu	37	22	30515015	30515015	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:30515015G>A	uc003agy.2	+	8	454	c.389G>A	c.(388-390)GGA>GAA	p.G130E		NM_152510	NP_689723	Q8N7B1	HORM2_HUMAN	HORMA domain containing 2	130	HORMA.				meiosis|mitosis	chromosome|nucleus					0			Epithelial(10;0.125)			ACGAAAGAAGGAGCCACTATG	0.343000													4	0					0	0	0.001168	0	0
C22orf30	253143	broad.mit.edu	37	22	32097690	32097690	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:32097690G>A	uc003alp.3	-	7	6252	c.6059C>T	c.(6058-6060)CCT>CTT	p.P2020L	C22orf30_uc003alo.1_Missense_Mutation_p.P1819L|C22orf30_uc010gwj.1_Intron	NM_173566	NP_775837	Q5THK1	PR14L_HUMAN	hypothetical protein LOC253143	2020											0						ATCTGGCCTAGGAATGGTTTT	0.418000													37	38					0	0	0.010771	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658227	46658227	+	Silent	SNP	G	A	A	rs143050190		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:46658227G>A	uc003bhh.2	-	1	993	c.993C>T	c.(991-993)ATC>ATT	p.I331I		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	331	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AACTCCTGACGATCCAGACAT	0.547000													100	101					0	0	0.014410	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658241	46658241	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr22:46658241C>G	uc003bhh.2	-	1	979	c.979G>C	c.(979-981)GTC>CTC	p.V327L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	327	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CAGACATAGACGGCGTCCGAG	0.527000													108	111					0	0	0.014410	0	0
OXTR	5021	broad.mit.edu	37	3	8794857	8794857	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:8794857G>A	uc003brc.2	-	4	1598	c.976C>T	c.(976-978)CCC>TCC	p.P326S		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	326	Helical; Name=7; (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	TAGATCCAGGGGTTGCAGCAG	0.592000													22	15					0	0	0.010504	0	0
CIDEC	63924	broad.mit.edu	37	3	9911928	9911928	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:9911928C>T	uc003btq.2	-	4	426	c.286G>A	c.(286-288)GAG>AAG	p.E96K	CIDEC_uc003bto.2_Intron|CIDEC_uc010hcp.2_Intron|CIDEC_uc003btp.2_Missense_Mutation_p.E106K|CIDEC_uc003btr.2_Missense_Mutation_p.E22K|CIDEC_uc003bts.2_Missense_Mutation_p.E22K	NM_022094	NP_071377	Q96AQ7	CIDEC_HUMAN	cell death-inducing DFFA-like effector c	96	CIDE-N.				apoptosis|induction of apoptosis	cytosol|focal adhesion|nucleus				central_nervous_system(1)	1	Medulloblastoma(99;0.227)					TGGAAGTACTCTTCTGTCTCT	0.557000													30	82					0	0	0.010818	0	0
RFTN1	23180	broad.mit.edu	37	3	16419364	16419364	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:16419364C>T	uc003cay.2	-	5	969	c.687G>A	c.(685-687)GGG>GGA	p.G229G	RFTN1_uc010hes.2_Silent_p.G193G	NM_015150	NP_055965	Q14699	RFTN1_HUMAN	raft-linking protein	229						plasma membrane				ovary(3)|central_nervous_system(1)	4						GGGGCACCTCCCCTCTGGGGC	0.627000													26	21					0	0	0.003954	0	0
SCN10A	6336	broad.mit.edu	37	3	38768112	38768112	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:38768112C>T	uc003ciq.2	-	16	3072	c.3072G>A	c.(3070-3072)GTG>GTA	p.V1024V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1024					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTTTGGGGATCACTTCCTGCT	0.542000													41	35					0	0	0.014410	0	0
SCN10A	6336	broad.mit.edu	37	3	38770242	38770242	+	Missense_Mutation	SNP	C	T	T	rs77049337		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:38770242C>T	uc003ciq.2	-	15	2431	c.2431G>A	c.(2431-2433)GAA>AAA	p.E811K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	811	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CGGTAGTTTTCCCCTAGGAGC	0.527000													27	86					0	0	0.006320	0	0
SCN11A	11280	broad.mit.edu	37	3	38936144	38936144	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:38936144C>T	uc011ays.1	-	15	2914	c.2715G>A	c.(2713-2715)AAG>AAA	p.K905K	SCN11A_uc010hhn.1_Silent_p.K21K	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	905					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CGCCCAGGGTCTTTGGTACAG	0.512000													28	77					0	0	0.006320	0	0
KLHL18	23276	broad.mit.edu	37	3	47378198	47378199	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:47378198_47378199CC>TT	uc003crd.2	+	7	1198_1199	c.1072_1073CC>TT	c.(1072-1074)CCG>TTG	p.P358L	KLHL18_uc003crc.2_Missense_Mutation_p.P358L|KLHL18_uc011bav.1_Missense_Mutation_p.P246L|KLHL18_uc010hjq.1_Missense_Mutation_p.P214L	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	358	Kelch 2.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		GGCCTACAACCCGGAGACAGAC	0.594000													28	30					0	0	0.004672	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50471844	50471844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:50471844C>T	uc003daq.2	-	3	343	c.305G>A	c.(304-306)CGG>CAG	p.R102Q	CACNA2D2_uc003dap.2_Missense_Mutation_p.R102Q	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	102	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	GAACAGGTTCCGGTTGTCCTT	0.577000													66	34					0	0	0.014410	0	0
DOCK3	1795	broad.mit.edu	37	3	50879124	50879124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:50879124C>T	uc011bds.1	+	3	163	c.140C>T	c.(139-141)TCA>TTA	p.S47L		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	47	SH3.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AGAGGAGTTTCAACAAAGAAG	0.289000													4	4					0	0	0.000602	0	0
STAB1	23166	broad.mit.edu	37	3	52545723	52545723	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:52545723G>A	uc003dej.2	+	26	2919	c.2845G>A	c.(2845-2847)GAC>AAC	p.D949N		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	949	Extracellular (Potential).|EGF-like 9.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CAGCCCCATCGACCCCTGCCG	0.637000													22	11					0	0	0.003954	0	0
ROBO1	6091	broad.mit.edu	37	3	78684948	78684948	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:78684948G>A	uc003dqe.2	-	23	3556	c.3348C>T	c.(3346-3348)ATC>ATT	p.I1116I	ROBO1_uc003dqb.2_Silent_p.I1077I|ROBO1_uc003dqc.2_Silent_p.I1016I|ROBO1_uc003dqd.2_Silent_p.I1071I|ROBO1_uc010hoh.2_Silent_p.I308I|ROBO1_uc011bgl.1_Silent_p.I688I	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1116	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		TTTGCTCCACGATGTTGTACT	0.473000													17	40					0	0	0.012319	0	0
CADM2	253559	broad.mit.edu	37	3	85961597	85961597	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:85961597G>A	uc003dqj.2	+	5	1203	c.577G>A	c.(577-579)GAC>AAC	p.D193N	CADM2_uc003dqk.2_Missense_Mutation_p.D202N|CADM2_uc003dql.2_Missense_Mutation_p.D195N	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	193	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		CTTCCGAGTGGACCGGAGTGA	0.428000													6	22					0	0	0.001168	0	0
SLC9A10	285335	broad.mit.edu	37	3	111940000	111940000	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:111940000C>T	uc003dyu.2	-	14	1867	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.E501K	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	549					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						CCAAAACTTTCTGCTGCACCA	0.388000													8	1					0	0	0.006214	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133666258	133666258	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:133666258C>T	uc003eqa.3	-	9	1411	c.1137G>A	c.(1135-1137)GGG>GGA	p.G379G	SLCO2A1_uc003eqb.3_Silent_p.G303G|SLCO2A1_uc011blv.1_Silent_p.G198G	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	379	Helical; Name=8; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CAAACAGCATCCCCAAGGCTG	0.517000													17	0					0	0	0.004990	0	0
GOLIM4	27333	broad.mit.edu	37	3	167728088	167728088	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:167728088G>A	uc003ffe.2	-	16	2404	c.2060C>T	c.(2059-2061)GCT>GTT	p.A687V	GOLIM4_uc011bpe.1_Missense_Mutation_p.A688V|GOLIM4_uc011bpf.1_Missense_Mutation_p.A660V|GOLIM4_uc011bpg.1_Missense_Mutation_p.A659V	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	687	Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TGATTTCTCAGCAACTGCAGC	0.433000													4	131					0	0	0.009096	0	0
SAMD7	344658	broad.mit.edu	37	3	169656259	169656259	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:169656259C>T	uc003fgd.2	+	9	1573	c.1306C>T	c.(1306-1308)CCT>TCT	p.P436S	SAMD7_uc003fge.2_Missense_Mutation_p.P436S|SAMD7_uc011bpo.1_Missense_Mutation_p.P337S	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	436										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			TACAATAATTCCTAAAGGAAT	0.398000													18	0					0	0	0.007413	0	0
PARL	55486	broad.mit.edu	37	3	183551530	183551530	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr3:183551530G>A	uc003fmd.2	-	8	971	c.912C>T	c.(910-912)TTC>TTT	p.F304F	PARL_uc003fme.2_Silent_p.F254F	NM_018622	NP_061092	Q9H300	PARL_HUMAN	presenilin associated, rhomboid-like isoform 1	304	Helical; (Potential).				proteolysis	integral to membrane|mitochondrial inner membrane|nucleus	serine-type endopeptidase activity				0	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.21e-41)|Epithelial(37;1.34e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CTGTGAACGTGAACATCGGAA	0.453000													55	3					0	0	0.014410	0	0
HTT	3064	broad.mit.edu	37	4	3230356	3230356	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:3230356C>T	uc011bvq.1	+	59	8014	c.7869C>T	c.(7867-7869)TCC>TCT	p.S2623S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2621					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCATACACTCCGTGTGGCTGG	0.537000													24	30					0	0	0.003330	0	0
LDB2	9079	broad.mit.edu	37	4	16504280	16504280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:16504280G>A	uc003goz.2	-	8	1424	c.1108C>T	c.(1108-1110)CAG>TAG	p.Q370*	LDB2_uc003gpa.2_3'UTR|LDB2_uc003gpb.2_Nonsense_Mutation_p.Q368*|LDB2_uc011bxh.1_Nonsense_Mutation_p.Q342*|LDB2_uc010iee.2_3'UTR|LDB2_uc003goy.2_Nonsense_Mutation_p.Q245*|LDB2_uc011bxi.1_3'UTR	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	370							LIM domain binding|transcription cofactor activity				0						TGGGAAGCCTGGGGTGGGGGG	0.507000													129	144					0	0	0.014410	0	0
SLIT2	9353	broad.mit.edu	37	4	20550726	20550726	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:20550726G>A	uc003gpr.1	+	24	2668	c.2464G>A	c.(2464-2466)GAT>AAT	p.D822N	SLIT2_uc003gps.1_Missense_Mutation_p.D814N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	822	LRR 19.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TCGCACCTTTGATGGATTAAA	0.353000													7	10					0	0	0.004482	0	0
GBA3	57733	broad.mit.edu	37	4	22820513	22820513	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:22820513C>T	uc003gqp.3	+	6	1468	c.1377C>T	c.(1375-1377)ATC>ATT	p.I459I	GBA3_uc010iep.2_Silent_p.I152I|GBA3_uc011bxo.1_3'UTR	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	459					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						AAGCCAAGATCATCCGAAACA	0.493000													9	7					0	0	0.006214	0	0
LOC401127	401127	broad.mit.edu	37	4	39482339	39482339	+	RNA	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:39482339G>A	uc011byn.1	+	1		c.465G>A			LOC401127_uc011byo.1_Intron	NR_026854				Homo sapiens WD repeat domain 5 pseudogene (LOC401127), non-coding RNA.												0						CATATGATGGGAAATTTGAGA	0.463000													26	31					0	0	0.003330	0	0
UGDH	7358	broad.mit.edu	37	4	39523079	39523079	+	Silent	SNP	G	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:39523079G>C	uc003guk.1	-	2	370	c.54C>G	c.(52-54)CCC>CCG	p.P18P	UGDH_uc011byp.1_Intron|UGDH_uc003gul.1_Silent_p.P18P	NM_003359	NP_003350	O60701	UGDH_HUMAN	UDP-glucose dehydrogenase	18					glycosaminoglycan biosynthetic process|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	electron carrier activity|NAD binding|UDP-glucose 6-dehydrogenase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4					NADH(DB00157)	CACTACATGTGGGTCCTCCAA	0.393000													40	51					0	0	0.008740	0	0
GRXCR1	389207	broad.mit.edu	37	4	43032430	43032430	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:43032430C>T	uc003gwt.2	+	4	746	c.746C>T	c.(745-747)CCA>CTA	p.P249L		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	249					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GGCTTTCTTCCATGCTCCGTG	0.478000													52	60					0	0	0.014410	0	0
SPATA18	132671	broad.mit.edu	37	4	52948629	52948629	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:52948629G>A	uc003gzl.2	+	10	1710	c.1432G>A	c.(1432-1434)GAC>AAC	p.D478N	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.D446N|SPATA18_uc003gzk.1_Missense_Mutation_p.D478N	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	478					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			CATGGAGAATGACTGTGTCAT	0.463000													39	31					0	0	0.004878	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013428	73013428	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:73013428C>T	uc003hgg.2	+	4	1566	c.1468C>T	c.(1468-1470)CCT>TCT	p.P490S	NPFFR2_uc010iig.1_Missense_Mutation_p.P272S|NPFFR2_uc003hgi.2_Missense_Mutation_p.P391S|NPFFR2_uc003hgh.2_Missense_Mutation_p.P388S|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	490	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			ATTTCAAAACCCTCATGGGGA	0.378000													38	39					0	0	0.008740	0	0
FRAS1	80144	broad.mit.edu	37	4	79321903	79321903	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:79321903C>T	uc003hlb.2	+	30	4431	c.3991C>T	c.(3991-3993)CAG>TAG	p.Q1331*	FRAS1_uc003hkw.2_Nonsense_Mutation_p.Q1331*	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1330	CSPG 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAGGGGTCTTCAGCTTGTGGC	0.428000													7	20					0	0	0.004482	0	0
GK2	2712	broad.mit.edu	37	4	80328516	80328516	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:80328516C>T	uc003hlu.2	-	1	857	c.839G>A	c.(838-840)GGA>GAA	p.G280E		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	280					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GCAACCTGTTCCATAGGTGTT	0.473000													53	56					0	0	0.014410	0	0
FAT4	79633	broad.mit.edu	37	4	126329908	126329908	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:126329908G>A	uc003ifj.3	+	4	5879	c.5879G>A	c.(5878-5880)GGA>GAA	p.G1960E	FAT4_uc011cgp.1_Missense_Mutation_p.G258E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1960	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTACCTGTGGGATCTACTGTT	0.284000													24	30					0	0	0.007291	0	0
C4orf29	80167	broad.mit.edu	37	4	128930340	128930340	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:128930340C>T	uc003ifr.2	+	6	754	c.436C>T	c.(436-438)CCT>TCT	p.P146S	C4orf29_uc003ifq.1_RNA|C4orf29_uc003ifs.2_Missense_Mutation_p.P19S|C4orf29_uc003ift.2_5'Flank|C4orf29_uc003ifu.2_5'Flank|C4orf29_uc010inz.2_5'Flank|C4orf29_uc003ifv.2_5'Flank	NM_001039717	NP_001034806	Q0P651	CD029_HUMAN	hypothetical protein LOC80167 precursor	146						extracellular region				ovary(1)	1						GTTAGAAAACCCTTATTATAT	0.328000													8	2					0	0	0.003080	0	0
PCDH18	54510	broad.mit.edu	37	4	138451472	138451472	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:138451472G>A	uc003ihe.3	-	1	2158	c.1771C>T	c.(1771-1773)CCC>TCC	p.P591S	PCDH18_uc003ihf.3_Missense_Mutation_p.P584S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.P371S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	591	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCCCCTTTGGGAATGGTGATT	0.458000													62	80					0	0	0.014410	0	0
SMAD1	4086	broad.mit.edu	37	4	146435880	146435880	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:146435880A>G	uc003ikc.2	+	2	531	c.115A>G	c.(115-117)AAA>GAA	p.K39E	SMAD1_uc003ikd.2_Missense_Mutation_p.K39E|SMAD1_uc010iov.2_Missense_Mutation_p.K39E|SMAD1_uc011cic.1_Missense_Mutation_p.K39E	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	39	Poly-Lys.|MH1.				BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					TGCTTTGGTGAAAAAACTGAA	0.468000													20	37					0	0	0.010504	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632089	156632089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:156632089C>T	uc003iov.2	+	7	1308	c.772C>T	c.(772-774)CAC>TAC	p.H258Y	GUCY1A3_uc003iou.2_Missense_Mutation_p.H258Y|GUCY1A3_uc010iqc.2_Missense_Mutation_p.H258Y|GUCY1A3_uc003iow.2_Missense_Mutation_p.H258Y|GUCY1A3_uc010iqd.2_Missense_Mutation_p.H257Y|GUCY1A3_uc003iox.2_Missense_Mutation_p.H258Y|GUCY1A3_uc003ioz.2_Missense_Mutation_p.H23Y|GUCY1A3_uc003ioy.2_Missense_Mutation_p.H258Y|GUCY1A3_uc010iqe.2_Missense_Mutation_p.H23Y|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.H258Y	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	258					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GTACTCCGTTCACATGAAAAG	0.473000													27	36					0	0	0.005443	0	0
GRIA2	2891	broad.mit.edu	37	4	158254129	158254129	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:158254129C>T	uc003ipm.3	+	7	1500	c.1041C>T	c.(1039-1041)GCC>GCT	p.A347A	GRIA2_uc011cit.1_Silent_p.A300A|GRIA2_uc003ipl.3_Silent_p.A347A|GRIA2_uc003ipk.3_Silent_p.A300A|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	347	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TAGAAAGGGCCCTCAAACAGG	0.428000													5	2					0	0	0.001168	0	0
RXFP1	59350	broad.mit.edu	37	4	159569787	159569787	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:159569787C>T	uc003ipz.2	+	17	1975	c.1893C>T	c.(1891-1893)TTC>TTT	p.F631F	RXFP1_uc011cja.1_Silent_p.F526F|RXFP1_uc010iqo.2_Silent_p.F583F|RXFP1_uc011cjb.1_Silent_p.F529F|RXFP1_uc010iqk.2_Silent_p.F499F|RXFP1_uc011cjc.1_Silent_p.F550F|RXFP1_uc011cjd.1_Silent_p.F550F|RXFP1_uc010iql.2_Silent_p.F475F|RXFP1_uc011cje.1_Silent_p.F658F|RXFP1_uc010iqm.2_Silent_p.F598F|RXFP1_uc011cjf.1_Silent_p.F500F|RXFP1_uc010iqn.2_Silent_p.F576F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	631	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AACGTTTTTTCTTTATAGTAT	0.328000													21	31					0	0	0.003954	0	0
CPE	1363	broad.mit.edu	37	4	166385646	166385646	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:166385646G>A	uc003irg.3	+	2	689	c.412G>A	c.(412-414)GGG>AGG	p.G138R		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	138					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATACCAGAAGGGGAACGAGAC	0.488000											OREG0016390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	10					0	0	0.003080	0	0
TLL1	7092	broad.mit.edu	37	4	166978447	166978447	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:166978447G>A	uc003irh.1	+	14	2479	c.1832G>A	c.(1831-1833)AGA>AAA	p.R611K	TLL1_uc011cjn.1_Missense_Mutation_p.R634K|TLL1_uc011cjo.1_Missense_Mutation_p.R435K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	611	EGF-like 1; calcium-binding (Potential).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GGCCCAGACAGAAGGAGCTGT	0.517000													6	7					0	0	0.001168	0	0
KIAA1712	80817	broad.mit.edu	37	4	175229985	175229985	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:175229985T>C	uc003itr.2	+	7	1067	c.653T>C	c.(652-654)GTT>GCT	p.V218A	KIAA1712_uc010iro.2_Missense_Mutation_p.V218A|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	218						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		GAAGTAAAGGTTCCTGAAATC	0.333000													9	15					0	0	0.010729	0	0
ASB5	140458	broad.mit.edu	37	4	177142381	177142381	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:177142381G>A	uc003iuq.1	-	5	611	c.595C>T	c.(595-597)CCT>TCT	p.P199S	ASB5_uc003iup.1_Missense_Mutation_p.P146S	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	199					intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		CCCAAATGAGGAATTTCTTGG	0.413000													38	35					0	0	0.005524	0	0
KLKB1	3818	broad.mit.edu	37	4	187179233	187179233	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:187179233T>A	uc003iyy.2	+	15	1855	c.1784T>A	c.(1783-1785)ATC>AAC	p.I595N	KLKB1_uc011clc.1_Missense_Mutation_p.I393N|KLKB1_uc011cld.1_Missense_Mutation_p.H510Q	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	595	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TTGGTGGGCATCACCAGCTGG	0.483000													52	76					0	0	0.014410	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455010	187455010	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:187455010C>T	uc003izd.1	-	2	904	c.886G>A	c.(886-888)GGG>AGG	p.G296R		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	296	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	TTCAGTAGCCCGTATATAATG	0.502000													38	67					0	0	0.004878	0	0
FAT1	2195	broad.mit.edu	37	4	187510159	187510159	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr4:187510159G>T	uc003izf.2	-	27	13542	c.13354C>A	c.(13354-13356)CCG>ACG	p.P4452T	FAT1_uc010isn.2_Missense_Mutation_p.P99T|FAT1_uc003ize.2_Missense_Mutation_p.P343T	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4452	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AATTCGGGCGGTAACGGTGGT	0.537000										HNSCC(5;0.00058)			162	174					2.04701e-75	3.592e-75	0.014410	1	0
TRIO	7204	broad.mit.edu	37	5	14488227	14488227	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:14488227C>T	uc003jff.2	+	48	7496	c.7490C>T	c.(7489-7491)CCC>CTC	p.P2497L	TRIO_uc003jfg.2_Intron|TRIO_uc003jfh.1_Missense_Mutation_p.P2146L	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2497					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCCAGCCGACCCGGCTCCTTC	0.716000													5	12					0	0	0.000602	0	0
FBXL7	23194	broad.mit.edu	37	5	15936668	15936668	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:15936668C>T	uc003jfn.1	+	4	1330	c.849C>T	c.(847-849)TTC>TTT	p.F283F		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	283	LRR 5.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						CGGACTGCTTCGTGCTGGAGG	0.617000													21	11					0	0	0.012319	0	0
CDH9	1007	broad.mit.edu	37	5	26988428	26988428	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:26988428G>A	uc003jgs.1	-	2	182	c.13C>T	c.(13-15)CAT>TAT	p.H5Y	CDH9_uc010iug.2_Missense_Mutation_p.H5Y	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	5					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						GGTATATAATGGTAAGTCCTC	0.328000													12	13					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	5	33162588	33162588	+	RNA	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:33162588C>T	uc003jhx.2	+	1		c.323C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGAATTGCATCGTGCTCATCG	0.512000													9	12					0	0	0.004482	0	0
OSMR	9180	broad.mit.edu	37	5	38876401	38876401	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:38876401C>T	uc003jln.1	+	3	539	c.172C>T	c.(172-174)CCT>TCT	p.P58S	OSMR_uc003jlm.1_Missense_Mutation_p.P58S	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	58	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CCACAACCTTCCTTATCATCA	0.388000													21	20					0	0	0.010504	0	0
C6	729	broad.mit.edu	37	5	41153958	41153958	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:41153958C>T	uc003jmk.2	-	15	2454	c.2244G>A	c.(2242-2244)GGG>GGA	p.G748G	C6_uc003jml.1_Silent_p.G748G	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	748	C5b-binding domain.|Sushi 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TCCAGGAATTCCCCTGGCATG	0.473000													4	7					0	0	0.000602	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64747412	64747412	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:64747412G>A	uc003jtp.2	-	7	1777	c.963C>T	c.(961-963)TCC>TCT	p.S321S	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	321	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		AGCTATCGAGGGACTTGTCTG	0.413000													26	0					0	0	0.005443	0	0
GPR98	84059	broad.mit.edu	37	5	89986803	89986803	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:89986803C>T	uc003kju.2	+	31	6992	c.6896C>T	c.(6895-6897)ACC>ATC	p.T2299I	GPR98_uc003kjt.2_Intron|GPR98_uc003kjv.2_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2299	Calx-beta 16.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCTGGGGAAACCATTCAAACC	0.493000													27	3					0	0	0.006320	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102493923	102493923	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:102493923G>A	uc003kod.3	+	15	2040	c.1521G>A	c.(1519-1521)TTG>TTA	p.L507L	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Silent_p.L507L	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	507					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						CTTTACTTTTGGTTCTAAAAT	0.378000													25	2					0	0	0.010818	0	0
FAM170A	340069	broad.mit.edu	37	5	118970422	118970422	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:118970422G>A	uc003ksm.2	+	3	1189	c.979G>A	c.(979-981)GAC>AAC	p.D327N	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.D327N|FAM170A_uc003kso.2_Missense_Mutation_p.D280N	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	327						intracellular	zinc ion binding			skin(1)	1						TTCTCCAAAGGACAGGAAGTG	0.478000													46	4					0	0	0.013114	0	0
TIFAB	497189	broad.mit.edu	37	5	134785516	134785516	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:134785516G>A	uc003law.3	-	2	315	c.114C>T	c.(112-114)CTC>CTT	p.L38L	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	38	FHA.										0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCCCCCGTCCGAGAAGCAGAG	0.662000													42	5					0	0	0.006230	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516557	140516557	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:140516557C>T	uc003liq.2	+	1	1758	c.1541C>T	c.(1540-1542)GCC>GTC	p.A514V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	514	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACCTGTTTGCCCTCAGGTCG	0.697000													44	4					0	0	0.014410	0	0
PCDHB12	56124	broad.mit.edu	37	5	140589843	140589843	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:140589843C>T	uc003liz.2	+	1	1553	c.1364C>T	c.(1363-1365)TCC>TTC	p.S455F	PCDHB12_uc011dak.1_Missense_Mutation_p.S118F	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	455	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCAAACTTCCTACGCCCTG	0.612000													45	4					0	0	0.013114	0	0
KIAA0319	9856	broad.mit.edu	37	6	24563610	24563610	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:24563610C>T	uc011djo.1	-	16	2805	c.2568G>A	c.(2566-2568)AAG>AAA	p.K856K	KIAA0319_uc011djp.1_Silent_p.K811K|KIAA0319_uc003neh.1_Silent_p.K856K|KIAA0319_uc011djq.1_Silent_p.K847K|KIAA0319_uc011djr.1_Silent_p.K856K|KIAA0319_uc010jpt.1_Silent_p.K267K	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	856	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GGGCCCGAATCTTCTGGACCT	0.567000													21	27					0	0	0.014323	0	0
ZBTB12	221527	broad.mit.edu	37	6	31868444	31868444	+	Silent	SNP	C	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:31868444C>A	uc003nyd.1	-	2	815	c.639G>T	c.(637-639)GTG>GTT	p.V213V	EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	213					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGGCCGACTCCACCTTGACGA	0.617000													220	282					4.26221e-99	7.495e-99	0.014410	1	0
NOTCH4	4855	broad.mit.edu	37	6	32188893	32188893	+	Missense_Mutation	SNP	G	A	A	rs144962111		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:32188893G>A	uc003obb.2	-	4	800	c.661C>T	c.(661-663)CTC>TTC	p.L221F	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.L221F	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	221	EGF-like 5; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACAGGGCAGAGGCACTGGAAG	0.647000													229	243					0	0	0.014410	0	0
MDFI	4188	broad.mit.edu	37	6	41617465	41617465	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:41617465G>A	uc003oqp.3	+	5	697	c.368G>A	c.(367-369)GGC>GAC	p.G123D	MDFI_uc003oqq.3_Missense_Mutation_p.G123D|MDFI_uc010jxn.2_Missense_Mutation_p.G123D	NM_005586	NP_005577	Q99750	MDFI_HUMAN	MyoD family inhibitor	123					cytoplasmic sequestering of transcription factor|dorsal/ventral axis specification|negative regulation of DNA binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of Wnt receptor signaling pathway	cytoplasm|nucleus					0	Ovarian(28;0.0327)|Colorectal(47;0.121)		Colorectal(64;0.0123)|COAD - Colon adenocarcinoma(64;0.0264)|KIRC - Kidney renal clear cell carcinoma(1;0.138)			GCCCTGGGTGGCCCCAAGGCC	0.652000													75	96					0	0	0.014410	0	0
GUCA1A	2978	broad.mit.edu	37	6	42147050	42147050	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:42147050G>A	uc003orx.2	+	6	1160	c.515G>A	c.(514-516)CGA>CAA	p.R172Q	GUCA1A_uc011duo.1_RNA|GUCA1A_uc010jxt.2_Missense_Mutation_p.R172Q	NM_000409	NP_000400	P43080	GUC1A_HUMAN	guanylate cyclase activator 1A (retina)	172					signal transduction|visual perception	membrane	calcium ion binding|calcium sensitive guanylate cyclase activator activity				0	Colorectal(47;0.196)		STAD - Stomach adenocarcinoma(11;5.54e-05)|Epithelial(12;0.000167)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			ACACTGACACGAAGCCTGGAC	0.622000													15	26					0	0	0.003163	0	0
GPR116	221395	broad.mit.edu	37	6	46826619	46826619	+	Silent	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:46826619G>T	uc003oyo.3	-	17	3310	c.3021C>A	c.(3019-3021)CTC>CTA	p.L1007L	GPR116_uc011dwj.1_Silent_p.L562L|GPR116_uc011dwk.1_Silent_p.L436L|GPR116_uc003oyp.3_Silent_p.L865L|GPR116_uc003oyq.3_Silent_p.L1007L|GPR116_uc010jzi.1_Silent_p.L679L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1007	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTATTCCCAGGAGAGAACTAG	0.483000													22	72					2.98393e-07	5.17049e-07	0.002780	1	0
GPR116	221395	broad.mit.edu	37	6	46874490	46874490	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:46874490G>A	uc003oyo.3	-	2	299	c.10C>T	c.(10-12)CCA>TCA	p.P4S	GPR116_uc003oyp.3_Missense_Mutation_p.P4S|GPR116_uc003oyq.3_Missense_Mutation_p.P4S|GPR116_uc003oyr.2_Missense_Mutation_p.P4S|uc003oys.2_Intron	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	4					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTTCTCCTTGGGGATTTCATG	0.368000													21	46					0	0	0.014323	0	0
GPR110	266977	broad.mit.edu	37	6	46977054	46977054	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:46977054C>T	uc003oyt.2	-	11	2316	c.2117G>A	c.(2116-2118)GGT>GAT	p.G706D	GPR110_uc011dwl.1_Missense_Mutation_p.G394D	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	706	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GCACCCATAACCCAGGCAAAA	0.473000													22	40					0	0	0.014323	0	0
GPR110	266977	broad.mit.edu	37	6	46977447	46977447	+	Missense_Mutation	SNP	G	C	C	rs138703993		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:46977447G>C	uc003oyt.2	-	11	1923	c.1724C>G	c.(1723-1725)CCT>CGT	p.P575R	GPR110_uc011dwl.1_Missense_Mutation_p.P263R	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	575	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						GGGGACAAAAGGTGACATCAA	0.408000													35	37					0	0	0.009718	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47251987	47251987	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:47251987C>T	uc003oyv.2	-	3	1363	c.930G>A	c.(928-930)CTG>CTA	p.L310L		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	310	Extracellular (Potential).				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			GCAGCAGCTTCAGGATGTGTC	0.577000													91	250					0	0	0.014410	0	0
CRISP3	10321	broad.mit.edu	37	6	49700982	49700982	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:49700982G>A	uc003ozs.2	-	6	462	c.447C>T	c.(445-447)CTC>CTT	p.L149L		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	149					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CACATCCAACGAGGTATGAAG	0.333000													36	90					0	0	0.007835	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147094	55147094	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:55147094C>T	uc003pcl.2	+	7	1492	c.1177C>T	c.(1177-1179)CGG>TGG	p.R393W	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	393	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCAGGAGGATCGGCTCACCAG	0.458000													9	10					0	0	0.008291	0	0
GFRAL	389400	broad.mit.edu	37	6	55196536	55196536	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:55196536G>A	uc003pcm.1	+	2	132	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	16						integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CTTGGAAAATGAATACACTTC	0.333000													36	22					0	0	0.007835	0	0
COL12A1	1303	broad.mit.edu	37	6	75848260	75848260	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:75848260C>T	uc003phs.2	-	29	5300	c.5134G>A	c.(5134-5136)GAA>AAA	p.E1712K	COL12A1_uc003pht.2_Missense_Mutation_p.E548K	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1712	Fibronectin type-III 12.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TTCAGGTTTTCGAACACCAAA	0.428000													12	31					0	0	0.001855	0	0
LCA5	167691	broad.mit.edu	37	6	80223375	80223375	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:80223375G>A	uc003pix.2	-	3	709	c.274C>T	c.(274-276)CCA>TCA	p.P92S	LCA5_uc003piy.2_Missense_Mutation_p.P92S|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.P92S	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	92					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TTCCGAAGTGGCTCTCTATTG	0.453000													59	2					0	0	0.014410	0	0
SNAP91	9892	broad.mit.edu	37	6	84292048	84292048	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:84292048G>A	uc011dze.1	-	22	2359	c.2042C>T	c.(2041-2043)TCC>TTC	p.S681F	SNAP91_uc011dzd.1_Missense_Mutation_p.S184F|SNAP91_uc003pkb.2_Missense_Mutation_p.S590F|SNAP91_uc003pkc.2_Missense_Mutation_p.S651F|SNAP91_uc003pkd.2_Missense_Mutation_p.S374F|SNAP91_uc003pka.2_Missense_Mutation_p.S679F	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	681					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TGGAGATGGGGAAGGCGCCAT	0.433000													11	3					0	0	0.001855	0	0
FUT9	10690	broad.mit.edu	37	6	96651051	96651051	+	Missense_Mutation	SNP	G	A	A	rs146406553		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:96651051G>A	uc003pop.3	+	3	361	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	7	Cytoplasmic (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity	p.G7E(1)		skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		ACATCCAAAGGAATTCTTCGC	0.388000													12	1					0	0	0.001855	0	0
GPRC6A	222545	broad.mit.edu	37	6	117130756	117130756	+	Silent	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:117130756T>C	uc003pxj.1	-	2	241	c.219A>G	c.(217-219)CAA>CAG	p.Q73Q	GPRC6A_uc003pxk.1_Silent_p.Q73Q|GPRC6A_uc003pxl.1_Silent_p.Q73Q	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	73	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TGGCAAGAGTTTGAAGAAAAA	0.363000													13	1					0	0	0.004007	0	0
CLVS2	134829	broad.mit.edu	37	6	123319255	123319255	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:123319255G>A	uc003pzi.1	+	2	1202	c.333G>A	c.(331-333)CTG>CTA	p.L111L		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	111	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGGCCAATCTGGACCACTATG	0.502000													52	2					0	0	0.014410	0	0
ALDH8A1	64577	broad.mit.edu	37	6	135264979	135264979	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:135264979G>A	uc003qew.2	-	2	317	c.264C>T	c.(262-264)GCC>GCT	p.A88A	ALDH8A1_uc003qex.2_Silent_p.A88A|ALDH8A1_uc010kgh.2_5'UTR|ALDH8A1_uc011ecx.1_Silent_p.A88A	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	88					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		ACTCGGCCTGGGCAAACTCCT	0.547000													51	4					0	0	0.014410	0	0
PHACTR2	9749	broad.mit.edu	37	6	144095234	144095234	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:144095234G>T	uc003qjq.3	+	8	1568	c.1438G>T	c.(1438-1440)GCT>TCT	p.A480S	PHACTR2_uc010khh.2_Missense_Mutation_p.A400S|PHACTR2_uc010khi.2_Missense_Mutation_p.A491S|PHACTR2_uc003qjr.3_Missense_Mutation_p.A411S	NM_014721	NP_055536	O75167	PHAR2_HUMAN	phosphatase and actin regulator 2 isoform 3	480	RPEL 2.						actin binding|protein phosphatase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(155;1.58e-05)|GBM - Glioblastoma multiforme(68;0.0386)		GGATACTCTTGCTATCAAACT	0.443000													20	3					1.15919e-05	1.99611e-05	0.008871	1	0
MRPL18	29074	broad.mit.edu	37	6	160212105	160212105	+	Silent	SNP	C	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr6:160212105C>A	uc003qsw.3	+	2	314	c.186C>A	c.(184-186)GCC>GCA	p.A62A	TCP1_uc003qsr.2_5'Flank|TCP1_uc003qss.2_5'Flank|TCP1_uc010kjz.2_5'Flank|TCP1_uc003qst.2_5'Flank|TCP1_uc010kka.1_5'Flank|MRPL18_uc010kkb.2_RNA	NM_014161	NP_054880	Q9H0U6	RM18_HUMAN	mitochondrial ribosomal protein L18 precursor	62					rRNA transport|translation	mitochondrial ribosome	5S rRNA binding|structural constituent of ribosome				0		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.79e-06)		TATCTGTAGCCAGGAAAGAGC	0.557000													32	0					1.26612e-14	2.20773e-14	0.003271	1	0
ZFAND2A	90637	broad.mit.edu	37	7	1195144	1195144	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:1195144A>G	uc003skc.2	-	4	528	c.227T>C	c.(226-228)GTT>GCT	p.V76A	ZFAND2A_uc003skd.3_Missense_Mutation_p.V76A	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	76						cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		GTGATCACCAACCACCACGTC	0.493000													51	70					0	0	0.014410	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066766	18066766	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:18066766G>A	uc003stz.2	-	1	721	c.640C>T	c.(640-642)CGT>TGT	p.R214C		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	214	Binding of phosphoribosylpyrophosphate (Potential).				nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					ATAGCCACACGATCATTCACA	0.453000													54	44					0	0	0.014410	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067105	18067105	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:18067105C>T	uc003stz.2	-	1	382	c.301G>A	c.(301-303)GAT>AAT	p.D101N		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	101	ATP (By similarity).				nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CGGCTCTTATCCTTCTTATCC	0.463000													63	88					0	0	0.014410	0	0
AOAH	313	broad.mit.edu	37	7	36616230	36616230	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:36616230C>T	uc003tfh.3	-	13	1372	c.971G>A	c.(970-972)TGG>TAG	p.W324*	AOAH_uc010kxf.2_Nonsense_Mutation_p.W324*|AOAH_uc011kba.1_Nonsense_Mutation_p.W292*	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	324					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GTTTCTTTTCCATAAGCGAAG	0.308000													25	44					0	0	0.008361	0	0
CDK13	8621	broad.mit.edu	37	7	40134079	40134079	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:40134079G>C	uc003thh.3	+	14	4321	c.4039G>C	c.(4039-4041)GCT>CCT	p.A1347P	CDK13_uc003thi.3_Missense_Mutation_p.A1287P|CDK13_uc003thj.2_Missense_Mutation_p.A398P|CDK13_uc003thk.2_Missense_Mutation_p.A280P	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1347					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TTTCTCTTCTGCTCCTTATGT	0.423000													25	38					0	0	0.004656	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44799042	44799042	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:44799042A>G	uc003tlr.2	+	7	1099	c.976A>G	c.(976-978)ACG>GCG	p.T326A	ZMIZ2_uc003tlq.2_Missense_Mutation_p.T294A|ZMIZ2_uc003tls.2_Missense_Mutation_p.T326A|ZMIZ2_uc003tlt.2_5'Flank|ZMIZ2_uc010kyj.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	326	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						GCCTGGCCCCACGGGACTGCA	0.701000													15	27					0	0	0.003163	0	0
RAMP3	10268	broad.mit.edu	37	7	45222997	45222997	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:45222997G>A	uc003tnb.2	+	3	494	c.433G>A	c.(433-435)GAC>AAC	p.D145N	RAMP3_uc003tnc.2_Missense_Mutation_p.D113N	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	145	Cytoplasmic (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	CAAACGCACCGACACGCTGCT	0.627000													70	102					0	0	0.014410	0	0
CDC14C	168448	broad.mit.edu	37	7	48964846	48964846	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:48964846G>A	uc010kyv.1	+	1	690	c.578G>A	c.(577-579)CGA>CAA	p.R193Q		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						ATACCAGACCGATTTATTGCC	0.353000													28	30					0	0	0.013726	0	0
AUTS2	26053	broad.mit.edu	37	7	70255400	70255400	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:70255400C>T	uc003tvw.3	+	19	3941	c.3198C>T	c.(3196-3198)TTC>TTT	p.F1066F	AUTS2_uc003tvx.3_Silent_p.F1042F|AUTS2_uc011keg.1_Silent_p.F518F	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	1066										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		ACCCTTCTTTCCACTGGGACC	0.617000													16	14					0	0	0.003163	0	0
PCLO	27445	broad.mit.edu	37	7	82453631	82453631	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:82453631G>A	uc003uhx.2	-	19	14806	c.14517C>T	c.(14515-14517)TCC>TCT	p.S4839S	PCLO_uc003uhv.2_Silent_p.S4839S|PCLO_uc003uht.1_Silent_p.S281S|PCLO_uc003uhu.1_Silent_p.S260S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4701	Ser-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCTCTGACTGGAATGAGACT	0.423000													14	17					0	0	0.003163	0	0
PCLO	27445	broad.mit.edu	37	7	82545616	82545616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:82545616G>A	uc003uhx.2	-	7	11975	c.11686C>T	c.(11686-11688)CCT>TCT	p.P3896S	PCLO_uc003uhv.2_Missense_Mutation_p.P3896S|PCLO_uc010lec.2_Missense_Mutation_p.P861S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3827	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTTGGGTAGGAAGAGCAGGG	0.443000													70	54					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82583350	82583350	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:82583350C>T	uc003uhx.2	-	5	7208	c.6919G>A	c.(6919-6921)GAA>AAA	p.E2307K	PCLO_uc003uhv.2_Missense_Mutation_p.E2307K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2238					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCCCAGTTTCCTTCTTGGCT	0.418000													55	72					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82584948	82584948	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:82584948G>A	uc003uhx.2	-	5	5610	c.5321C>T	c.(5320-5322)TCA>TTA	p.S1774L	PCLO_uc003uhv.2_Missense_Mutation_p.S1774L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1705					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCTTCCTCTGAAGAATCTTC	0.413000													30	40					0	0	0.008361	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86536995	86536995	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:86536995G>A	uc011kha.1	-	18	2734	c.2549C>T	c.(2548-2550)TCA>TTA	p.S850L	KIAA1324L_uc003uif.1_Missense_Mutation_p.S610L|KIAA1324L_uc011kgz.1_Missense_Mutation_p.S736L|KIAA1324L_uc003uie.2_Missense_Mutation_p.S683L	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	850	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					CCTGGGGACTGAAATCACTCC	0.358000													8	18					0	0	0.006214	0	0
CYP3A4	1576	broad.mit.edu	37	7	99381680	99381680	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:99381680T>C	uc003urv.1	-	1	129	c.25A>G	c.(25-27)ATG>GTG	p.M9V	CYP3A4_uc003urw.1_Missense_Mutation_p.M9V|CYP3A4_uc011kiz.1_Missense_Mutation_p.M9V|CYP3A4_uc011kja.1_Missense_Mutation_p.M9V|CYP3A4_uc011kjb.1_Missense_Mutation_p.M9V	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	9	Helical; (Potential).				alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity	p.M9V(1)		central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	CAGGTTTCCATGGCCAAGTCT	0.507000													41	39					0	0	0.014410	0	0
PILRB	29990	broad.mit.edu	37	7	99956539	99956539	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:99956539C>T	uc003uuk.2	+	16	2787	c.291C>T	c.(289-291)CTC>CTT	p.L97L	PILRB_uc003uul.2_Missense_Mutation_p.L28F|PILRB_uc003uum.1_RNA|PILRB_uc003uun.2_Silent_p.L97L	NM_013440	NP_038468	Q9UKJ0	PILRB_HUMAN	paired immunoglobulin-like type 2 receptor beta	97	Extracellular (Potential).|Ig-like V-type.				activation of transmembrane receptor protein tyrosine kinase activity	integral to plasma membrane	protein binding|receptor activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGAACCGGCTCTTTCTGAACT	0.552000													4	155					0	0	0.008291	0	0
PILRA	29992	broad.mit.edu	37	7	99971893	99971893	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:99971893C>T	uc003uuo.1	+	2	503	c.291C>T	c.(289-291)CTC>CTT	p.L97L	PILRA_uc011kjn.1_Silent_p.L97L|PILRA_uc011kjo.1_Silent_p.L97L|PILRA_uc003uup.1_Silent_p.L97L|PILRA_uc003uuq.1_Silent_p.L97L	NM_013439	NP_038467	Q9UKJ1	PILRA_HUMAN	paired immunoglobulin-like type 2 receptor alpha	97	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	extracellular region|integral to membrane|plasma membrane	protein binding|receptor activity			skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGAACCGGCTCTTTCTGAACT	0.547000													88	82					0	0	0.014410	0	0
KCND2	3751	broad.mit.edu	37	7	120385909	120385909	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:120385909C>T	uc003vjj.1	+	5	2508	c.1543C>T	c.(1543-1545)CAC>TAC	p.H515Y		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	515	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TCCTTCAAGTCACAGTCCTTC	0.433000													9	12					0	0	0.006214	0	0
C7orf58	79974	broad.mit.edu	37	7	120768517	120768517	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:120768517G>A	uc003vjq.3	+	11	1831	c.1384G>A	c.(1384-1386)GGA>AGA	p.G462R	C7orf58_uc003vjr.1_Missense_Mutation_p.G462R|C7orf58_uc003vjs.3_Missense_Mutation_p.G462R|C7orf58_uc003vjt.3_Missense_Mutation_p.G242R|C7orf58_uc010lkk.1_Missense_Mutation_p.G242R	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	462						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AAAGGAACTTGGAAGTCTGGG	0.373000													17	21					0	0	0.007413	0	0
C7orf58	79974	broad.mit.edu	37	7	120884389	120884389	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:120884389G>A	uc003vjq.3	+	18	2754	c.2307G>A	c.(2305-2307)AGG>AGA	p.R769R	C7orf58_uc003vjs.3_Silent_p.R769R|C7orf58_uc003vjt.3_Silent_p.R549R	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	769						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TGGGAGGAAGGAAGGTAGGTT	0.478000													37	33					0	0	0.006230	0	0
LRRC4	64101	broad.mit.edu	37	7	127670227	127670227	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:127670227T>C	uc003vmk.2	-	2	604	c.467A>G	c.(466-468)AAC>AGC	p.N156S	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	156	LRR 4.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		GATGGGGTTGTTGCGAAGCCA	0.587000													35	72					0	0	0.004289	0	0
HIPK2	28996	broad.mit.edu	37	7	139257875	139257876	+	Missense_Mutation	DNP	TG	CA	CA			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:139257875_139257876TG>CA	uc003vvf.3	-	15	3568_3569	c.3394_3395CA>TG	c.(3394-3396)CAG>TGG	p.Q1132W	HIPK2_uc003vvd.3_Missense_Mutation_p.Q1105W	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	1132	Autoinhibitory domain (AID).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GGCAGTGTGCTGCACGGTGTGG	0.713000													20	6					0	0	0.004672	0	0
ADCK2	90956	broad.mit.edu	37	7	140380881	140380881	+	Missense_Mutation	SNP	C	T	T	rs138501789		TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:140380881C>T	uc003vvy.1	+	4	1427	c.1249C>T	c.(1249-1251)CCC>TCC	p.P417S	ADCK2_uc003vvz.2_Missense_Mutation_p.P417S	NM_052853	NP_443085	Q7Z695	ADCK2_HUMAN	aarF domain containing kinase 2	417	Protein kinase.					integral to membrane	ATP binding|protein serine/threonine kinase activity				0	Melanoma(164;0.00956)					GGCAGGAATTCCCGTGGACTT	0.567000													31	38					0	0	0.003271	0	0
CLCN1	1180	broad.mit.edu	37	7	143048705	143048706	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:143048705_143048706GG>AA	uc003wcr.1	+	23	2701_2702	c.2614_2615GG>AA	c.(2614-2616)GGG>AAG	p.G872K	CLCN1_uc011ktc.1_Missense_Mutation_p.G484K	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	872	CBS 2.|Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GGCCATTGAGGGGCACACCAAG	0.401000													17	33					0	0	0.004672	0	0
HTR5A	3361	broad.mit.edu	37	7	154863337	154863337	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr7:154863337C>T	uc003wlu.1	+	1	792	c.728C>T	c.(727-729)TCC>TTC	p.S243F	uc011kvt.1_5'Flank|uc003wlt.2_5'Flank	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	243	Cytoplasmic (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		TCACCCATATCCGAAGCTGTG	0.542000													29	23					0	0	0.009535	0	0
MYOM2	9172	broad.mit.edu	37	8	2020445	2020446	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:2020445_2020446CC>TT	uc003wpx.3	+	9	952_953	c.814_815CC>TT	c.(814-816)CCG>TTG	p.P272L	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	272	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		ATCGATGATTCCGTACACGCAC	0.559000													26	29					0	0	0.004672	0	0
DLC1	10395	broad.mit.edu	37	8	12957006	12957006	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:12957006G>A	uc003wwm.2	-	9	3284	c.2840C>T	c.(2839-2841)CCA>CTA	p.P947L	DLC1_uc003wwk.1_Missense_Mutation_p.P510L|DLC1_uc003wwl.1_Missense_Mutation_p.P544L|DLC1_uc011kxx.1_Missense_Mutation_p.P436L	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	947					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TATCTGTTTTGGAGAGGACGG	0.567000													27	43					0	0	0.008361	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37735068	37735068	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:37735068A>C	uc003xkm.1	-	2	417	c.373T>G	c.(373-375)TGG>GGG	p.W125G	RAB11FIP1_uc010lvz.1_5'UTR|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.W125G|RAB11FIP1_uc003xkp.1_5'UTR	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	125					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			AACTTATACCACCTGAAAGGA	0.458000													18	37					0	0	0.006122	0	0
SDR16C5	195814	broad.mit.edu	37	8	57221525	57221525	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:57221525G>A	uc003xsy.1	-	4	1165	c.527C>T	c.(526-528)TCA>TTA	p.S176L	SDR16C5_uc010lyk.1_Missense_Mutation_p.S176L|SDR16C5_uc010lyl.1_Missense_Mutation_p.S132L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	176					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGCTGAACTTGAAATGCAAAC	0.343000													30	56					0	0	0.003271	0	0
CLVS1	157807	broad.mit.edu	37	8	62289311	62289311	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:62289311C>T	uc003xuh.2	+	3	927	c.603C>T	c.(601-603)ATC>ATT	p.I201I	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Silent_p.I201I	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	201	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CACCTTCAATCCTTAAACTGG	0.378000													14	15					0	0	0.003163	0	0
KCNB2	9312	broad.mit.edu	37	8	73849501	73849501	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:73849501C>T	uc003xzb.2	+	3	2499	c.1911C>T	c.(1909-1911)CTC>CTT	p.L637L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	637	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CAACCGACCTCCCAGGGACAG	0.602000													37	59					0	0	0.007835	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110447480	110447480	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:110447480C>T	uc003yne.2	+	29	3506	c.3402C>T	c.(3400-3402)TCC>TCT	p.S1134S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1134	Extracellular (Potential).|IPT/TIG 4.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGCTGTGTCCATGGCTGATG	0.428000										HNSCC(38;0.096)			57	57					0	0	0.014410	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456923	110456923	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:110456923G>A	uc003yne.2	+	38	4929	c.4825G>A	c.(4825-4827)GAA>AAA	p.E1609K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1609	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGTCGTAGAAGAAAGTAGTGA	0.363000										HNSCC(38;0.096)			71	65					0	0	0.014410	0	0
CSMD3	114788	broad.mit.edu	37	8	113299419	113299419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:113299419C>T	uc003ynu.2	-	58	9364	c.9205G>A	c.(9205-9207)GAA>AAA	p.E3069K	CSMD3_uc003yns.2_Missense_Mutation_p.E2271K|CSMD3_uc003ynt.2_Missense_Mutation_p.E3029K|CSMD3_uc011lhx.1_Missense_Mutation_p.E2900K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3069	Extracellular (Potential).|Sushi 22.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAATTGCTTTCCTGTCTAGAG	0.433000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			8	8					0	0	0.004482	0	0
FAM84B	157638	broad.mit.edu	37	8	127569289	127569289	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:127569289A>T	uc003yrz.1	-	2	630	c.346T>A	c.(346-348)TGC>AGC	p.C116S		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	116						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			CCCGGCTTGCACTTGTTGAGC	0.617000													14	25					0	0	0.001855	0	0
KCNQ3	3786	broad.mit.edu	37	8	133192441	133192441	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr8:133192441C>T	uc003ytj.2	-	4	965	c.740G>A	c.(739-741)TGG>TAG	p.W247*	KCNQ3_uc010mdt.2_Nonsense_Mutation_p.W247*	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	247	Helical; Voltage-sensor; Name=Segment S4; (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CAGAAGCTTCCAGGTGCCACC	0.597000													38	49					0	0	0.005524	0	0
DOCK8	81704	broad.mit.edu	37	9	328055	328055	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:328055G>A	uc003zgf.2	+	9	1040	c.928G>A	c.(928-930)GAC>AAC	p.D310N	DOCK8_uc011lls.1_Missense_Mutation_p.D310N|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.D242N|DOCK8_uc003zgg.2_Missense_Mutation_p.D242N|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	310					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CCTGAACTCTGACCAGTTCAA	0.438000													31	2					0	0	0.003271	0	0
C9orf79	286234	broad.mit.edu	37	9	90503237	90503237	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:90503237G>A	uc004app.3	+	4	3870	c.3835G>A	c.(3835-3837)GGA>AGA	p.G1279R		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1279						integral to membrane				ovary(3)	3						CCCCAGGAAAGGAGGCACACG	0.552000													21	2					0	0	0.002780	0	0
KLF4	9314	broad.mit.edu	37	9	110248119	110248119	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:110248119C>T	uc004bdh.2	-	4	2049	c.1428G>A	c.(1426-1428)ACG>ACA	p.T476T	KLF4_uc004bdf.1_Silent_p.T401T|KLF4_uc004bdg.2_Silent_p.T451T	NM_004235	NP_004226	O43474	KLF4_HUMAN	Kruppel-like factor 4 (gut)	485	Interaction with target DNA (By similarity).				fat cell differentiation|mesodermal cell fate determination|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|stem cell maintenance|transcription from RNA polymerase II promoter	nucleus	RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor recruiting transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(2)|lung(1)	3						GGCGGTGCCCCGTGTGTTTAC	0.527000													45	1					0	0	0.009718	0	0
PAPPA	5069	broad.mit.edu	37	9	119124877	119124877	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:119124877G>C	uc004bjn.2	+	18	4735	c.4354G>C	c.(4354-4356)GGG>CGG	p.G1452R	PAPPA_uc011lxq.1_Missense_Mutation_p.G827R	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1452	Sushi 4.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TCAGGGACTTGGGAGCAATGT	0.473000													3	80					0	0	0.009096	0	0
OR1J4	26219	broad.mit.edu	37	9	125282217	125282217	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:125282217C>T	uc011lyw.1	+	1	798	c.798C>T	c.(796-798)GCC>GCT	p.A266A		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATCCAGTGCCTCCAGTGACA	0.473000													18	4					0	0	0.006122	0	0
LCN2	3934	broad.mit.edu	37	9	130914544	130914544	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:130914544C>T	uc004bto.1	+	5	631	c.558C>T	c.(556-558)ATC>ATT	p.I186I	LCN2_uc011map.1_Silent_p.I186I	NM_005564	NP_005555	P80188	NGAL_HUMAN	lipocalin 2 precursor	186					apoptosis|innate immune response|regulation of apoptosis|siderophore transport		iron ion binding|transporter activity				0						AAAACCACATCGTCTTCCCTG	0.557000													23	6					0	0	0.003330	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070915	141070915	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr9:141070915C>T	uc004com.2	+	4	579	c.318C>T	c.(316-318)ACC>ACT	p.T106T	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGTCAGACACCGTGGTGGAGC	0.522000													5	33					0	0	0.003080	0	0
MXRA5	25878	broad.mit.edu	37	X	3240932	3240932	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:3240932C>T	uc004crg.3	-	5	2951	c.2794G>A	c.(2794-2796)GAA>AAA	p.E932K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	932						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTGGGCTTTTCATAGACTGTG	0.507000													34	2					0	0	0.006230	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212034	26212034	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:26212034G>A	uc004dbr.2	+	2	220	c.71G>A	c.(70-72)GGT>GAT	p.G24D	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	24										ovary(3)	3						CAGCCACAGGGTCTCACGGGT	0.567000													25	1					0	0	0.006320	0	0
MAGEB6	158809	broad.mit.edu	37	X	26212939	26212939	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:26212939G>A	uc004dbr.2	+	2	1125	c.976G>A	c.(976-978)GGG>AGG	p.G326R	MAGEB6_uc010ngc.1_Missense_Mutation_p.G106R	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	326	MAGE.									ovary(3)	3						TTCAATCTATGGGGATGCTCG	0.488000													79	12					0	0	0.014410	0	0
GPR82	27197	broad.mit.edu	37	X	41586351	41586351	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:41586351C>T	uc004dfs.1	+	3	312	c.72C>T	c.(70-72)CTC>CTT	p.L24L	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR82_uc004dft.2_Silent_p.L24L|GPR82_uc004dfu.1_RNA	NM_080817	NP_543007	Q96P67	GPR82_HUMAN	G protein-coupled receptor 82	24	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTTACATCCTCCTTTGTATTG	0.338000													17	1					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	X	51150762	51150762	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:51150762C>T	uc004dpj.2	+	1	996	c.894C>T	c.(892-894)GTC>GTT	p.V298V		NM_203407	NP_981952			hypothetical protein LOC340602																		CTGCGCCAGTCTCTGCCCCCC	0.746000													12	0					0	0	0.013537	0	0
IQSEC2	23096	broad.mit.edu	37	X	53280174	53280174	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:53280174G>A	uc004dsd.2	-	5	1785	c.1584C>T	c.(1582-1584)TCC>TCT	p.S528S	IQSEC2_uc004dsc.2_Silent_p.S323S	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	518	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						GTCGCTCAGGGGATTGTTGGG	0.617000													80	6					0	0	0.014410	0	0
PHF8	23133	broad.mit.edu	37	X	54011532	54011532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:54011532C>T	uc004dsu.2	-	18	2439	c.2366G>A	c.(2365-2367)CGA>CAA	p.R789Q	PHF8_uc004dst.2_Missense_Mutation_p.R753Q|PHF8_uc004dsv.2_Missense_Mutation_p.R619Q|PHF8_uc004dsw.2_Missense_Mutation_p.R652Q|PHF8_uc004dsx.2_Missense_Mutation_p.R517Q|PHF8_uc004dsy.2_Missense_Mutation_p.R736Q	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	789	Ser-rich.				brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CCCACTGCTTCGATCCTGTCC	0.642000													18	20					0	0	0.004990	0	0
GNL3L	54552	broad.mit.edu	37	X	54585023	54585023	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:54585023C>T	uc004dth.1	+	15	1740	c.1601C>T	c.(1600-1602)CCC>CTC	p.P534L	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	534					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						GAGACGGACCCCCTGCAACAG	0.572000													18	24					0	0	0.006122	0	0
NLGN3	54413	broad.mit.edu	37	X	70386992	70386992	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:70386992G>A	uc004dzd.1	+	6	1245	c.1045G>A	c.(1045-1047)GTG>ATG	p.V349M	NLGN3_uc010nlb.1_Missense_Mutation_p.V309M|NLGN3_uc004dzb.2_Missense_Mutation_p.V329M|NLGN3_uc004dzc.2_Missense_Mutation_p.V212M|NLGN3_uc011mps.1_Missense_Mutation_p.V309M|NLGN3_uc004dze.2_Missense_Mutation_p.V147M	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	349	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					CGTGGATATGGTGGACTGTCT	0.562000													45	31					0	0	0.014410	0	0
ITGB1BP2	26548	broad.mit.edu	37	X	70523548	70523548	+	Splice_Site	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:70523548G>A	uc004dzr.1	+	7	568	c.539_splice	c.e7+1	p.G180_splice	BCYRN1_uc011mpt.1_Intron|ITGB1BP2_uc004dzs.1_Splice_Site_p.G162_splice	NM_012278	NP_036410	Q9UKP3	ITBP2_HUMAN	integrin beta 1 binding protein 2						muscle organ development|signal transduction		SH3 domain binding			ovary(1)	1	Renal(35;0.156)					TCCATGAGGGGTGAGGGAGGG	0.473000													27	38					0	0	0.005443	0	0
XIST	7503	broad.mit.edu	37	X	73068109	73068109	+	RNA	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:73068109G>A	uc004ebm.1	-	1		c.4480C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CAGCAGATAGGGAAATTGCAT	0.433000													7	8					0	0	0.003080	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961064	73961064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:73961064C>T	uc004eby.2	-	3	3945	c.3328G>A	c.(3328-3330)GAA>AAA	p.E1110K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1110					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTGATTTTTTCCACACTGTCC	0.443000													14	9					0	0	0.002450	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962141	73962141	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:73962141C>T	uc004eby.2	-	3	2868	c.2251G>A	c.(2251-2253)GAA>AAA	p.E751K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	751					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GATTGGTTTTCCAAGAGAGGG	0.378000													15	17					0	0	0.002450	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004186	75004186	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:75004186C>T	uc004ecj.1	-	1	886	c.701G>A	c.(700-702)CGA>CAA	p.R234Q		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	234	MAGE 1.									ovary(1)|skin(1)	2						CTCCAAGAATCGCATGCACAC	0.488000													30	30					0	0	0.007291	0	0
ATP7A	538	broad.mit.edu	37	X	77244961	77244961	+	Silent	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:77244961C>T	uc004ecx.3	+	4	1003	c.843C>T	c.(841-843)TTC>TTT	p.F281F	ATP7A_uc004ecw.2_Silent_p.F281F	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	281	HMA 3.|Cytoplasmic (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						CAGCCACTTTCATCATTGATG	0.368000													70	102					0	0	0.014410	0	0
BRWD3	254065	broad.mit.edu	37	X	79984278	79984278	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:79984278G>A	uc004edt.2	-	14	1622	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I	BRWD3_uc004edo.2_Silent_p.I49I|BRWD3_uc004edp.2_Silent_p.I282I|BRWD3_uc004edq.2_Silent_p.I49I|BRWD3_uc010nmj.1_Silent_p.I49I|BRWD3_uc004edr.2_Silent_p.I123I|BRWD3_uc004eds.2_Silent_p.I49I|BRWD3_uc004edu.2_Silent_p.I123I|BRWD3_uc004edv.2_Silent_p.I49I|BRWD3_uc004edw.2_Silent_p.I49I|BRWD3_uc004edx.2_Silent_p.I49I|BRWD3_uc004edy.2_Silent_p.I49I|BRWD3_uc004edz.2_Silent_p.I123I|BRWD3_uc004eea.2_Silent_p.I123I|BRWD3_uc004eeb.2_Silent_p.I49I	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	453	WD 7.									ovary(4)	4						GCTGTCCTGTGATAGAATTCC	0.264000													15	15					0	0	0.002450	0	0
HMGN5	79366	broad.mit.edu	37	X	80371822	80371822	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:80371822C>T	uc004eee.1	-	6	477	c.148G>A	c.(148-150)GAT>AAT	p.D50N		NM_030763	NP_110390	P82970	HMGN5_HUMAN	high-mobility group nucleosome binding domain 5	50					chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin|nucleolus	chromatin binding|DNA binding			lung(1)	1						TCCATCATATCACTTTTTGTC	0.328000													4	12					0	0	0.000602	0	0
SYTL4	94121	broad.mit.edu	37	X	99936257	99936257	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:99936257A>G	uc004egd.3	-	16	1881	c.1525T>C	c.(1525-1527)TCC>CCC	p.S509P	SYTL4_uc004egc.2_5'Flank|SYTL4_uc010nnb.2_Missense_Mutation_p.S181P|SYTL4_uc010nnc.2_Missense_Mutation_p.S509P|SYTL4_uc004ege.3_Missense_Mutation_p.S509P|SYTL4_uc004egf.3_Missense_Mutation_p.S509P	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4	509					exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGGGTTTTGGAGGCTGGGATG	0.512000													27	48					0	0	0.009535	0	0
RAB9B	51209	broad.mit.edu	37	X	103080312	103080312	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:103080312T>G	uc004ell.1	-	3	688	c.403A>C	c.(403-405)ACT>CCT	p.T135P	RAB9B_uc004eli.1_Intron	NM_016370	NP_057454	Q9NP90	RAB9B_HUMAN	RAB9B, member RAS oncogene family	135					Golgi to endosome transport|protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|protein binding			lung(3)	3						GCCTCCTCAGTAGTCACTTGC	0.438000													77	152					0	0	0.014410	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449843	105449843	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:105449843G>A	uc004emf.1	+	4	1067	c.418G>A	c.(418-420)GAC>AAC	p.D140N	MUM1L1_uc004emg.1_Missense_Mutation_p.D140N	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	140										ovary(2)|pancreas(1)|skin(1)	4						GGATGAAGGTGACTTACCAGG	0.433000													15	9					0	0	0.007413	0	0
ATG4A	115201	broad.mit.edu	37	X	107395032	107395032	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:107395032G>A	uc004enr.2	+	11	1084	c.961G>A	c.(961-963)GGA>AGA	p.G321R	ATG4A_uc004ent.2_Missense_Mutation_p.G259R|ATG4A_uc004ens.2_Missense_Mutation_p.G237R|ATG4A_uc011msl.1_Missense_Mutation_p.G175R|ATG4A_uc010npi.2_RNA|ATG4A_uc004enu.2_Missense_Mutation_p.G237R|COL4A6_uc011msm.1_Intron	NM_052936	NP_443168	Q8WYN0	ATG4A_HUMAN	autophagy-related cysteine endopeptidase 2	321					autophagy|protein transport|proteolysis	cytoplasm	cysteine-type peptidase activity			pancreas(1)	1						TTCCCCCAAGGGATTTTTCTG	0.398000													100	180					0	0	0.014410	0	0
DOCK11	139818	broad.mit.edu	37	X	117707775	117707775	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:117707775C>T	uc004eqp.2	+	12	1246	c.1183C>T	c.(1183-1185)CCC>TCC	p.P395S	DOCK11_uc004eqq.2_Missense_Mutation_p.P161S	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	395					blood coagulation	cytosol	GTP binding			ovary(3)	3						CCAGGTTGAGCCCTTTTTTAT	0.408000													45	67					0	0	0.013114	0	0
BCORL1	63035	broad.mit.edu	37	X	129173251	129173251	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:129173251C>T	uc004evb.1	+	10	4726	c.4612C>T	c.(4612-4614)CTC>TTC	p.L1538F	BCORL1_uc004evc.1_Missense_Mutation_p.L374F	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	1538	ANK 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						GAAGCGCTTTCTCAGTGGTAA	0.557000													34	46					0	0	0.006230	0	0
OR13H1	347468	broad.mit.edu	37	X	130678968	130678968	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:130678968G>A	uc011muw.1	+	1	921	c.921G>A	c.(919-921)AGG>AGA	p.R307R	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TGTTGAAAAGGACATGAGCCT	0.378000													16	18					0	0	0.003163	0	0
GPR112	139378	broad.mit.edu	37	X	135428453	135428453	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:135428453C>T	uc004ezu.1	+	6	2879	c.2588C>T	c.(2587-2589)CCA>CTA	p.P863L	GPR112_uc010nsb.1_Missense_Mutation_p.P658L|GPR112_uc010nsc.1_Missense_Mutation_p.P630L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	863	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GAGGTTTCTCCATTTTCAACA	0.408000													19	20					0	0	0.012319	0	0
CXorf1	9142	broad.mit.edu	37	X	144909531	144909531	+	Nonstop_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:144909531A>G	uc004fch.2	+	1	604	c.336A>G	c.(334-336)TGA>TGG	p.*112W		NM_004709	NP_004700	O96002	CX001_HUMAN	hypothetical protein LOC9142	112											0	Acute lymphoblastic leukemia(192;6.56e-05)					CCTACAAATGACAAATGGTAA	0.403000													16	8					0	0	0.006122	0	0
PASD1	139135	broad.mit.edu	37	X	150789427	150789427	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:150789427T>C	uc004fev.3	+	5	565	c.233T>C	c.(232-234)TTA>TCA	p.L78S		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	78	PAS.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AAAAAATTATTAAGCCTTCTG	0.234000													29	26					0	0	0.006230	0	0
PRRG3	79057	broad.mit.edu	37	X	150869307	150869307	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:150869307G>A	uc004few.1	+	4	888	c.498G>A	c.(496-498)AGG>AGA	p.R166R		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	166	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding	p.R166fs*14(1)		ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGGGGCAGGACCACAGTCC	0.667000													20	16					0	0	0.008871	0	0
F8	2157	broad.mit.edu	37	X	154159039	154159039	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:154159039A>G	uc004fmt.2	-	14	3197	c.3026T>C	c.(3025-3027)TTA>TCA	p.L1009S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1009	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AACTTTGAATAAGGCATTATC	0.348000													23	45					0	0	0.003954	0	0
F8	2157	broad.mit.edu	37	X	154185319	154185319	+	Silent	SNP	G	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:154185319G>A	uc004fmt.2	-	11	1836	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	555	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CCATATTAACGAAACTAGAGT	0.438000													54	54					0	0	0.014410	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	-	-			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr1:85039999_85040007delGCAGCGCCA	uc001dka.2	-	1	157_165	c.92_100delTGGCGCTGC	c.(91-102)CTGGCGCTGCGG>CGG	p.LAL31del	CTBS_uc001dkc.2_5'UTR|CTBS_uc001dkd.2_5'UTR|CTBS_uc001dkb.2_5'UTR	NM_004388	NP_004379	Q01459	DIAC_HUMAN	chitobiase, di-N-acetyl- precursor	31_33						lysosome	cation binding				0				all cancers(265;0.00727)|Epithelial(280;0.0192)|OV - Ovarian serous cystadenocarcinoma(397;0.166)		GCCGCGAGCCgcagcgccagcagcgccag	0.589													3	6	---	---	---	---					
RASSF4	83937	broad.mit.edu	37	10	45480284	45480285	+	Frame_Shift_Ins	INS	-	C	C			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr10:45480284_45480285insC	uc001jbo.2	+	6	531_532	c.397_398insC	c.(397-399)GCCfs	p.A133fs	RASSF4_uc001jbp.2_Frame_Shift_Ins_p.A164fs|RASSF4_uc009xmn.2_Frame_Shift_Ins_p.A63fs|RASSF4_uc001jbq.2_Frame_Shift_Ins_p.A30fs|RASSF4_uc001jbt.2_Frame_Shift_Ins_p.A90fs	NM_032023	NP_114412	Q9H2L5	RASF4_HUMAN	Ras association domain family 4	133					cell cycle|signal transduction		protein binding			large_intestine(1)	1						GGCAGAGGAGGCCCCCCAGCTG	0.668													59	101	---	---	---	---					
APC	324	broad.mit.edu	37	5	112175951	112175952	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:112175951_112175952insA	uc010jby.2	+	16	5040_5041	c.4660_4661insA	c.(4660-4662)GAAfs	p.E1554fs	APC_uc011cvt.1_Frame_Shift_Ins_p.E1536fs|APC_uc003kpz.3_Frame_Shift_Ins_p.E1554fs|APC_uc003kpy.3_Frame_Shift_Ins_p.E1554fs|APC_uc010jbz.2_Frame_Shift_Ins_p.E1271fs|APC_uc010jca.2_Frame_Shift_Ins_p.E854fs	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1554	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.T1556fs*3(35)|p.E1554fs*5(2)|p.E1554*(2)|p.?(1)|p.T1556fs*9(1)|p.K1192fs*3(1)|p.?fs(1)|p.E1554fs*11(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GAAAGAGGCAGAAAAAACTATT	0.342		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			25	5	---	---	---	---					
KCNN2	3781	broad.mit.edu	37	5	113698631	113698632	+	In_Frame_Ins	INS	-	GCC	GCC	rs151038013	by1000genomes	TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chr5:113698631_113698632insGCC	uc003kqo.2	+	1	616_617	c.159_160insGCC	c.(157-162)insGCC	p.58_59insA		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	58_59						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CTGCAGCCGCTGCCGCCGCCGC	0.658													5	2	---	---	---	---					
CXorf22	170063	broad.mit.edu	37	X	35990026	35990026	+	Frame_Shift_Del	DEL	A	-	-			TCGA-GN-A268-06A-11D-A196-08	TCGA-GN-A268-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9a810fbc-0118-48d4-b06a-7c3d49d8e6ed	1171cada-eb0d-46f3-bd91-c0d0b81f2184	g.chrX:35990026delA	uc004ddj.2	+	13	2257	c.2198delA	c.(2197-2199)GAAfs	p.E733fs	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	733										large_intestine(1)|lung(1)|ovary(1)	3						ACTCCACAAGAAAAACATGAT	0.294													2	4	---	---	---	---					
