Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CCDC27	148870	broad.mit.edu	37	1	3673352	3673352	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:3673352G>A	uc001akv.2	+	4	690	c.609G>A	c.(607-609)AGG>AGA	p.R203R		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	203										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TGCGGAAGAGGAGAAAATCCC	0.547													15	89					0	0	0.003163	0	0
H6PD	9563	broad.mit.edu	37	1	9324635	9324635	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:9324635G>T	uc001apt.2	+	5	2356	c.2083G>T	c.(2083-2085)GCC>TCC	p.A695S		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	695	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GGGCATGGGTGCCGACGGGCA	0.682													17	72					6.94344e-10	7.20546e-10	0.006122	1	0
CLSTN1	22883	broad.mit.edu	37	1	9809659	9809659	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:9809659G>A	uc001aqh.2	-	7	1604	c.845C>T	c.(844-846)GCC>GTC	p.A282V	CLSTN1_uc001aqi.2_Missense_Mutation_p.A272V|CLSTN1_uc010oag.1_Missense_Mutation_p.A282V	NM_001009566	NP_001009566	O94985	CSTN1_HUMAN	calsyntenin 1 isoform 1	282	Extracellular (Potential).				homophilic cell adhesion	cell junction|cell projection|endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nucleus|postsynaptic membrane	calcium ion binding			skin(1)	1	all_lung(157;0.222)	all_lung(284;4.03e-05)|Lung NSC(185;6.93e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00314)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|Colorectal(212;8.36e-08)|COAD - Colon adenocarcinoma(227;1.93e-05)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|STAD - Stomach adenocarcinoma(132;0.00644)|READ - Rectum adenocarcinoma(331;0.0419)		TGGAAAGACGGCCAACGCGCC	0.552													9	70					0	0	0.004482	0	0
UBIAD1	29914	broad.mit.edu	37	1	11345724	11345724	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:11345724C>T	uc001asg.2	+	2	887	c.553C>T	c.(553-555)CTG>TTG	p.L185L		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	185					menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		GTACGTGGCTCTGGGAGACCT	0.547													9	42					0	0	0.006214	0	0
TNFRSF8	943	broad.mit.edu	37	1	12202505	12202505	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:12202505C>T	uc001atq.2	+	15	1927	c.1705C>T	c.(1705-1707)CTG>TTG	p.L569L	TNFRSF8_uc010obc.1_Silent_p.L457L|TNFRSF8_uc001atr.2_Silent_p.L106L|TNFRSF8_uc001ats.2_Silent_p.L50L	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	569	Cytoplasmic (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		AGAACCGCCTCTGGGCAGCTG	0.667													8	21					0	0	0.006214	0	0
C1orf158	93190	broad.mit.edu	37	1	12820745	12820745	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:12820745G>A	uc001auh.2	+	4	662	c.446G>A	c.(445-447)AGA>AAA	p.R149K		NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	149										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CTCAAGCAGAGACAGCTCACA	0.542													6	49					0	0	0.001168	0	0
MST1P9	11223	broad.mit.edu	37	1	17085457	17085457	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:17085457C>T	uc010ock.1	-	10	1234	c.1234G>A	c.(1234-1236)GAT>AAT	p.D412N	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GGAGCAAAATCGTGGCAGGGT	0.617													6	99					0	0	0.003080	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808159	18808159	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:18808159G>A	uc001bax.2	+	1	736	c.684G>A	c.(682-684)GTG>GTA	p.V228V	KLHDC7A_uc009vpg.2_Silent_p.V10V	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	228						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCACCCGTGTGATAGGGGTCA	0.602													16	58					0	0	0.004007	0	0
TCEA3	6920	broad.mit.edu	37	1	23743824	23743824	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:23743824C>T	uc001bgx.1	-	4	433	c.298G>A	c.(298-300)GAA>AAA	p.E100K	TCEA3_uc009vqn.1_Missense_Mutation_p.E79K|TCEA3_uc010ody.1_Missense_Mutation_p.E63K	NM_003196	NP_003187	O75764	TCEA3_HUMAN	transcription elongation factor A (SII), 3	100					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	nucleus	DNA binding|translation elongation factor activity|zinc ion binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.16e-05)|all_lung(284;6.68e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.0054)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.6e-25)|Colorectal(126;8.32e-08)|COAD - Colon adenocarcinoma(152;4.29e-06)|GBM - Glioblastoma multiforme(114;9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00424)|STAD - Stomach adenocarcinoma(196;0.0145)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0963)|LUSC - Lung squamous cell carcinoma(448;0.198)		AGccctttttccttcttcttt	0.373													15	68					0	0	0.004990	0	0
FCN3	8547	broad.mit.edu	37	1	27697178	27697178	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:27697178G>A	uc001boa.2	-	7	573	c.567C>T	c.(565-567)AAC>AAT	p.N189N	FCN3_uc001bob.2_Silent_p.N178N	NM_003665	NP_003656	O75636	FCN3_HUMAN	ficolin 3 isoform 1 precursor	189	Fibrinogen C-terminal.				complement activation, lectin pathway|signal transduction	collagen|extracellular space	receptor binding|sugar binding				0		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.42e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00128)|KIRC - Kidney renal clear cell carcinoma(1967;0.00155)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		CGAAAGTACGGTTACCATTAA	0.542													26	135					0	0	0.006320	0	0
HCRTR1	3061	broad.mit.edu	37	1	32086541	32086541	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:32086541G>A	uc009vtx.2	+	5	861	c.476G>A	c.(475-477)CGG>CAG	p.R159Q	HCRTR1_uc001btb.2_5'UTR|HCRTR1_uc001btc.3_Missense_Mutation_p.R73Q|HCRTR1_uc001btd.2_Missense_Mutation_p.R159Q|HCRTR1_uc010ogl.1_Missense_Mutation_p.R159Q	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	159	Cytoplasmic (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		AGCACAGCCCGGCGGGCCCGT	0.617													14	54					0	0	0.003163	0	0
CSMD2	114784	broad.mit.edu	37	1	33990616	33990616	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:33990616G>A	uc001bxn.1	-	65	9859	c.9830C>T	c.(9829-9831)TCC>TTC	p.S3277F	CSMD2_uc001bxm.1_Missense_Mutation_p.S3421F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3277	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TTTCCACAGGGAATTCTTGGC	0.502													32	137					0	0	0.005524	0	0
CSMD2	114784	broad.mit.edu	37	1	33998709	33998709	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:33998709G>A	uc001bxn.1	-	63	9709	c.9680C>T	c.(9679-9681)TCC>TTC	p.S3227F	CSMD2_uc001bxm.1_Missense_Mutation_p.S3371F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3227	Sushi 26.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCGGTGCTCGGAGCCACCCTT	0.667													6	24					0	0	0.001168	0	0
CSMD2	114784	broad.mit.edu	37	1	34080129	34080129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:34080129C>T	uc001bxn.1	-	40	6017	c.5988G>A	c.(5986-5988)TGG>TGA	p.W1996*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W2036*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.W909*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1996	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTGCTATTTTCCAGGAGCAGT	0.433													5	34					0	0	0.000602	0	0
ZMYM6	9204	broad.mit.edu	37	1	35476593	35476593	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:35476593G>A	uc001byh.2	-	9	1335	c.1107C>T	c.(1105-1107)CCC>CCT	p.P369P	ZMYM6_uc001byf.1_Silent_p.P369P|ZMYM6_uc010oht.1_Silent_p.P272P|ZMYM6_uc009vup.2_Silent_p.P175P|ZMYM6_uc009vuq.1_Silent_p.P369P|ZMYM6_uc009vur.1_Silent_p.P175P	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	369	MYM-type 5.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				CCTGAGACAGGGGCACCGCCG	0.473													12	48					0	0	0.013537	0	0
GRIK3	2899	broad.mit.edu	37	1	37270690	37270690	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:37270690G>A	uc001caz.2	-	15	2598	c.2463C>T	c.(2461-2463)ATC>ATT	p.I821I	GRIK3_uc001cba.1_Silent_p.I821I	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	821	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGATGCCCCCGATCTTCTGGA	0.597													18	82					0	0	0.008871	0	0
TIE1	7075	broad.mit.edu	37	1	43778840	43778840	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:43778840C>T	uc001ciu.2	+	13	2041	c.1962C>T	c.(1960-1962)GCC>GCT	p.A654A	TIE1_uc010okd.1_Silent_p.A654A|TIE1_uc010oke.1_Silent_p.A609A|TIE1_uc009vwq.2_Silent_p.A610A|TIE1_uc010okf.1_Silent_p.A299A|TIE1_uc010okg.1_Silent_p.A299A	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	654	Fibronectin type-III 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ACGCCCAGGCCCTCTCAGACT	0.647													13	40					0	0	0.002450	0	0
CYP4A11	1579	broad.mit.edu	37	1	47399628	47399628	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:47399628G>A	uc001cqp.3	-	9	1263	c.1212C>T	c.(1210-1212)TCC>TCT	p.S404S	CYP4A11_uc001cqq.2_Silent_p.S404S|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	404					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	CTTTGGGCAAGGAGCGCCCAT	0.562													8	44					0	0	0.006214	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402994	47402994	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:47402994C>T	uc001cqp.3	-	3	413	c.362G>A	c.(361-363)AGA>AAA	p.R121K	CYP4A11_uc001cqq.2_Missense_Mutation_p.R121K|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	121					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	AGCCAGGAATCTGTAGGAACC	0.448													6	44					0	0	0.004482	0	0
CYP4A11	1579	broad.mit.edu	37	1	47403783	47403783	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:47403783C>T	uc001cqp.3	-	2	273	c.222G>A	c.(220-222)CGG>CGA	p.R74R	CYP4A11_uc001cqq.2_Silent_p.R74R|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	74					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	ATTTCTGAATCCGTTGTAGCT	0.488													15	77					0	0	0.004007	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169911	57169911	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:57169911G>A	uc001cyk.3	+	7	1127	c.1056G>A	c.(1054-1056)ATG>ATA	p.M352I		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	352					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GTTCTTTTATGGATGATAGTG	0.468													10	42					0	0	0.008291	0	0
C8B	732	broad.mit.edu	37	1	57415272	57415272	+	Nonsense_Mutation	SNP	G	A	A	rs140813121	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:57415272G>A	uc001cyp.2	-	6	887	c.820C>T	c.(820-822)CGA>TGA	p.R274*	C8B_uc010oon.1_Nonsense_Mutation_p.R212*|C8B_uc010ooo.1_Nonsense_Mutation_p.R222*	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	274	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTTTGCCTCGATCACTTTGA	0.323													6	35					0	0	0.001168	0	0
C1orf87	127795	broad.mit.edu	37	1	60505758	60505758	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:60505758T>C	uc001czs.1	-	5	670	c.578A>G	c.(577-579)AAC>AGC	p.N193S		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	193							calcium ion binding			ovary(1)|breast(1)	2						TTCTAATAAGTTGGAACTCAA	0.448													17	65					0	0	0.004990	0	0
C1orf173	127254	broad.mit.edu	37	1	75037778	75037778	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:75037778C>T	uc001dgg.2	-	14	3835	c.3616G>A	c.(3616-3618)GAA>AAA	p.E1206K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1206	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CGGTGCCCTTCCTTCAGGGCC	0.592													28	115					0	0	0.006320	0	0
C1orf173	127254	broad.mit.edu	37	1	75038009	75038009	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:75038009C>T	uc001dgg.2	-	14	3604	c.3385G>A	c.(3385-3387)GAA>AAA	p.E1129K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1129	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ACAGGTGCTTCGTTCTCAGCA	0.468													7	60					0	0	0.001984	0	0
AK5	26289	broad.mit.edu	37	1	78024300	78024300	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:78024300G>T	uc001dhn.2	+	14	1891	c.1634G>T	c.(1633-1635)GGA>GTA	p.G545V	AK5_uc001dho.2_Missense_Mutation_p.G519V	NM_174858	NP_777283	Q9Y6K8	KAD5_HUMAN	adenylate kinase 5 isoform 1	545					ADP biosynthetic process|ATP metabolic process|dADP biosynthetic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine ribonucleotide biosynthetic process|signal transduction	centrosome|cytosol	adenylate kinase activity|ATP binding|cAMP-dependent protein kinase regulator activity|nucleoside kinase activity			skin(1)	1						AATGCAGAGGGAACACCAGAG	0.313													9	55					0.00448238	0.00460127	0.004482	1	0
USP33	23032	broad.mit.edu	37	1	78180395	78180395	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:78180395G>A	uc001dht.2	-	20	2559	c.2212C>T	c.(2212-2214)CTT>TTT	p.L738F	USP33_uc001dhs.2_Missense_Mutation_p.L459F|USP33_uc001dhu.2_Missense_Mutation_p.L707F|USP33_uc001dhv.2_Missense_Mutation_p.L543F|USP33_uc001dhw.2_Missense_Mutation_p.L730F	NM_015017	NP_055832	Q8TEY7	UBP33_HUMAN	ubiquitin specific protease 33 isoform 1	738	DUSP 1.				axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(2)|ovary(1)	3						TAAAACTGAAGGAGGCTTGGT	0.353													18	50					0	0	0.006122	0	0
EPHX4	253152	broad.mit.edu	37	1	92498096	92498096	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:92498096G>A	uc001don.2	+	2	370	c.266G>A	c.(265-267)GGA>GAA	p.G89E		NM_173567	NP_775838	Q8IUS5	EPHX4_HUMAN	abhydrolase domain containing 7	89						integral to membrane	hydrolase activity			central_nervous_system(1)	1						GTTGCTGCTGGAGAAAGAGGC	0.358													15	67					0	0	0.007413	0	0
BCAR3	8412	broad.mit.edu	37	1	94048307	94048307	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:94048307G>A	uc001dpz.2	-	7	1512	c.1237C>T	c.(1237-1239)CTC>TTC	p.L413F	BCAR3_uc001dqa.2_Missense_Mutation_p.L413F|BCAR3_uc001dqb.2_Missense_Mutation_p.L413F|BCAR3_uc001dpx.3_Missense_Mutation_p.L89F|BCAR3_uc001dpy.2_Missense_Mutation_p.L322F|BCAR3_uc009wdm.1_Missense_Mutation_p.L89F	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	413					response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		GGAACCTTGAGGAACGGCACC	0.627													12	61					0	0	0.002450	0	0
GPR61	83873	broad.mit.edu	37	1	110086967	110086967	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:110086967C>T	uc001dxy.2	+	2	2006	c.1323C>T	c.(1321-1323)CTC>CTT	p.L441L		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	441	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		ACAGCTACCTCCGTCCTGCCG	0.587													6	21					0	0	0.004482	0	0
CD53	963	broad.mit.edu	37	1	111439353	111439353	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:111439353G>A	uc001dzw.2	+	7	673	c.502G>A	c.(502-504)GAG>AAG	p.E168K	CD53_uc001dzx.2_Missense_Mutation_p.E168K|CD53_uc010owa.1_Intron|CD53_uc001dzy.2_Intron	NM_001040033	NP_001035122	P19397	CD53_HUMAN	CD53 antigen	168	Extracellular (Potential).				signal transduction	integral to membrane|plasma membrane					0		all_cancers(81;1.06e-05)|all_epithelial(167;1.95e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0264)|Colorectal(144;0.0375)|all cancers(265;0.11)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.141)|LUSC - Lung squamous cell carcinoma(189;0.144)		TCGAAAAGTGGAGGTAATTTT	0.438													12	79					0	0	0.010729	0	0
OVGP1	5016	broad.mit.edu	37	1	111969247	111969247	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:111969247G>A	uc001eba.2	-	3	128	c.72C>T	c.(70-72)CTC>CTT	p.L24L	OVGP1_uc001eaz.2_5'UTR|OVGP1_uc010owb.1_5'UTR|OVGP1_uc010owc.1_Silent_p.L14L	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	24					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity	p.L24V(1)		ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		AATAACACACGAGTTTATGGG	0.547													3	19					0	0	0.004672	0	0
SYT6	148281	broad.mit.edu	37	1	114646258	114646258	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:114646258C>T	uc001eev.2	-	4	1152	c.902G>A	c.(901-903)CGG>CAG	p.R301Q		NM_205848	NP_995320	Q5T7P8	SYT6_HUMAN	synaptotagmin VI	386	Cytoplasmic (Potential).|C2 2.				acrosomal vesicle exocytosis	cell junction|cytosol|integral to membrane|perinuclear endoplasmic reticulum|peripheral to membrane of membrane fraction|synaptic vesicle membrane	clathrin binding|metal ion binding|protein homodimerization activity|syntaxin binding|transporter activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Lung SC(450;0.184)	all_cancers(81;4.41e-08)|all_epithelial(167;5.18e-08)|all_lung(203;1.58e-05)|Lung NSC(69;2.82e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTTGAGGTTCCGACACTTAAT	0.537													9	69					0	0	0.004482	0	0
VTCN1	79679	broad.mit.edu	37	1	117695729	117695729	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:117695729C>T	uc001ehb.2	-	4	780	c.708G>A	c.(706-708)GGG>GGA	p.G236G	VTCN1_uc001ehc.2_Silent_p.G141G|VTCN1_uc009whf.1_Silent_p.G120G	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	236	Extracellular (Potential).|Ig-like V-type 2.					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		CTTTGATATCCCCTGTTGCTT	0.358													22	92					0	0	0.002780	0	0
NBPF7	343505	broad.mit.edu	37	1	120379918	120379918	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:120379918C>T	uc010oxk.1	-	6	1524	c.903G>A	c.(901-903)TGG>TGA	p.W301*		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	301	NBPF 2.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		GCCCACAAATCCACAGAGTTA	0.443													54	287					0	0	0.014410	0	0
HFE2	148738	broad.mit.edu	37	1	145416872	145416872	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:145416872C>T	uc001eni.2	+	4	1542	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.S180F|HFE2_uc001enk.2_Missense_Mutation_p.S293F|HFE2_uc001enl.2_Missense_Mutation_p.S180F	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	406					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTTCCTCTTTCCTCAGCAACC	0.522													14	99					0	0	0.001855	0	0
PDIA3P	171423	broad.mit.edu	37	1	146650562	146650562	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:146650562C>T	uc001epg.1	+	1	1133	c.870C>T	c.(868-870)TTC>TTT	p.F290F		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						CAAAGAAATTCCTGGATGCTG	0.433													6	19					0	0	0.001984	0	0
OTUD7B	56957	broad.mit.edu	37	1	149939391	149939391	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:149939391G>A	uc001etn.2	-	4	686	c.330C>T	c.(328-330)GCC>GCT	p.A110A	OTUD7B_uc001eto.2_Intron	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	110					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CATGGGACCGGGCCAGGGAAA	0.552													23	60					0	0	0.004656	0	0
RORC	6097	broad.mit.edu	37	1	151787500	151787500	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:151787500C>T	uc001ezh.2	-	5	808	c.700G>A	c.(700-702)GAG>AAG	p.E234K	RORC_uc001ezg.2_Missense_Mutation_p.E213K|RORC_uc010pdo.1_Missense_Mutation_p.E288K|RORC_uc010pdp.1_Missense_Mutation_p.E234K	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	234	Hinge (Potential).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTGTGTTCCTCAAAACGAAGT	0.617													8	34					0	0	0.003080	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058476	152058476	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:152058476C>T	uc001ezo.1	-	3	1747	c.1682G>A	c.(1681-1683)AGC>AAC	p.S561N		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	561							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TGTCTCTGAGCTGCTATTGCC	0.537													36	114					0	0	0.003271	0	0
FLG	2312	broad.mit.edu	37	1	152277785	152277785	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:152277785T>C	uc001ezu.1	-	3	9613	c.9577A>G	c.(9577-9579)AGA>GGA	p.R3193G		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3193	Filaggrin 19.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTGAGTGTCTAGAGATGTCG	0.542									Ichthyosis				39	156					0	0	0.009718	0	0
FLG	2312	broad.mit.edu	37	1	152279804	152279804	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:152279804C>T	uc001ezu.1	-	3	7594	c.7558G>A	c.(7558-7560)GAT>AAT	p.D2520N		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2520	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GATTGTTCATCGTTACGAGTT	0.587									Ichthyosis				82	289					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152323829	152323829	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:152323829C>T	uc001ezw.3	-	3	6506	c.6433G>A	c.(6433-6435)GGA>AGA	p.G2145R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2145	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTATAGTTCCCTGTCTCCCG	0.507													80	300					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152329028	152329028	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:152329028C>T	uc001ezw.3	-	3	1307	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	412	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGGAAAATTCATTTGAACTA	0.428													22	100					0	0	0.003330	0	0
KCNN3	3782	broad.mit.edu	37	1	154680526	154680526	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:154680526G>A	uc001ffp.2	-	8	2436	c.2122C>T	c.(2122-2124)CCA>TCA	p.P708S	KCNN3_uc001ffo.2_Missense_Mutation_p.P403S	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	713						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			TCGGAGATTGGGGTGTGGGTG	0.607													34	132					0	0	0.004289	0	0
GON4L	54856	broad.mit.edu	37	1	155753808	155753808	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:155753808G>A	uc001flz.2	-	14	1958	c.1861C>T	c.(1861-1863)CGT>TGT	p.R621C	GON4L_uc001fly.1_Missense_Mutation_p.R621C|GON4L_uc009wrh.1_Missense_Mutation_p.R621C|GON4L_uc001fma.1_Missense_Mutation_p.R621C|GON4L_uc001fmc.2_Missense_Mutation_p.R621C|GON4L_uc001fmd.3_Missense_Mutation_p.R621C|GON4L_uc009wri.2_Missense_Mutation_p.R207C|GON4L_uc009wrj.1_Missense_Mutation_p.R136C|GON4L_uc001fme.2_Missense_Mutation_p.R449C	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	621					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					AAGTTAGGACGAGGCTCAGCT	0.453													26	68					0	0	0.010818	0	0
BCAN	63827	broad.mit.edu	37	1	156622499	156622499	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:156622499G>A	uc001fpp.2	+	8	2093	c.1757G>A	c.(1756-1758)GGA>GAA	p.G586E	BCAN_uc001fpo.2_Missense_Mutation_p.G586E	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	586					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GAGGAGACAGGAAGCTCCGAG	0.622													17	59					0	0	0.006122	0	0
BCAN	63827	broad.mit.edu	37	1	156622522	156622522	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:156622522C>T	uc001fpp.2	+	8	2116	c.1780C>T	c.(1780-1782)CTG>TTG	p.L594L	BCAN_uc001fpo.2_Silent_p.L594L	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	594					cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGCCCCTTCCCTGCTTCCAGC	0.637													16	39					0	0	0.004007	0	0
HDGF	3068	broad.mit.edu	37	1	156714136	156714136	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:156714136G>A	uc001fpy.3	-	4	630	c.308C>T	c.(307-309)TCC>TTC	p.S103F	HDGF_uc009wsd.2_Missense_Mutation_p.S71F|HDGF_uc001fpz.3_Missense_Mutation_p.S96F|HDGF_uc009wse.2_Missense_Mutation_p.S119F|HDGF_uc010phr.1_Missense_Mutation_p.S126F|HDGF_uc009wsf.2_Missense_Mutation_p.S71F|HDGF_uc009wsg.2_Missense_Mutation_p.S103F	NM_004494	NP_004485	P51858	HDGF_HUMAN	hepatoma-derived growth factor isoform a	103					cell proliferation|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	DNA binding|growth factor activity|heparin binding|nucleotide binding			lung(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)	Breast(1374;0.198)		Colorectal(1306;0.018)		CTTTTTCTGGGAGGACTGCAG	0.607													85	251					0	0	0.014410	0	0
FCRL4	83417	broad.mit.edu	37	1	157557143	157557143	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:157557143C>T	uc001fqw.2	-	5	906	c.770G>A	c.(769-771)GGA>GAA	p.G257E	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	257	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				CCAATAGGATCCTGAGTTTTC	0.537													73	291					0	0	0.014410	0	0
SPTA1	6708	broad.mit.edu	37	1	158632546	158632546	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:158632546C>T	uc001fst.1	-	17	2609	c.2410G>A	c.(2410-2412)GAT>AAT	p.D804N		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	804	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCTCCTCATCCTCTGTGTCT	0.517													9	64					0	0	0.010729	0	0
PBX1	5087	broad.mit.edu	37	1	164769111	164769111	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:164769111G>A	uc001gct.2	+	4	944	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	PBX1_uc010pku.1_Missense_Mutation_p.R229Q|PBX1_uc010pkv.1_Missense_Mutation_p.R146Q|PBX1_uc001gcs.2_Missense_Mutation_p.R229Q|PBX1_uc010pkw.1_Missense_Mutation_p.R119Q	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	229					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						CTGCGTTCCCGATTTCTGGAT	0.617			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								7	24					0	0	0.008291	0	0
ALDH9A1	223	broad.mit.edu	37	1	165649914	165649914	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:165649914G>A	uc001gdh.1	-	5	704	c.599C>T	c.(598-600)GCC>GTC	p.A200V	ALDH9A1_uc010pky.1_Missense_Mutation_p.A106V|ALDH9A1_uc010pkz.1_Missense_Mutation_p.A190V|ALDH9A1_uc010pla.1_Missense_Mutation_p.A106V	NM_000696	NP_000687	P49189	AL9A1_HUMAN	aldehyde dehydrogenase 9A1	176					carnitine biosynthetic process|cellular aldehyde metabolic process|hormone metabolic process|neurotransmitter biosynthetic process	cytosol|plasma membrane	3-chloroallyl aldehyde dehydrogenase activity|4-trimethylammoniobutyraldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aminobutyraldehyde dehydrogenase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				NADH(DB00157)	AAAGACCATGGCATTACCTGC	0.428													21	64					0	0	0.002780	0	0
F5	2153	broad.mit.edu	37	1	169509710	169509710	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:169509710C>T	uc001ggg.1	-	13	4763	c.4618G>A	c.(4618-4620)GAA>AAA	p.E1540K		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1540	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TAATCAATTTCAGCATAGTCA	0.428													9	32					0	0	0.004482	0	0
C1orf129	80133	broad.mit.edu	37	1	170914708	170914708	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:170914708G>A	uc001ghg.2	+	2	141	c.11G>A	c.(10-12)AGG>AAG	p.R4K	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Missense_Mutation_p.R4K	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	4							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATGTTGACAAGGAATCCAAAA	0.343													4	20					0	0	0.000602	0	0
VAMP4	8674	broad.mit.edu	37	1	171679897	171679897	+	Silent	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:171679897T>G	uc001ghx.1	-	5	436	c.222A>C	c.(220-222)GTA>GTC	p.V74V	VAMP4_uc001ghw.1_RNA|VAMP4_uc001ghy.1_Silent_p.V73V|VAMP4_uc001ghv.1_5'Flank	NM_003762	NP_003753	O75379	VAMP4_HUMAN	vesicle-associated membrane protein 4	74	Cytoplasmic (Potential).|v-SNARE coiled-coil homology.				vesicle-mediated transport	endosome|Golgi membrane|integral to membrane|lysosome					0	all_cancers(6;1.42e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CTCTCTCAATTACCTTTGTAA	0.318													11	85					0	0	0.008291	0	0
TNN	63923	broad.mit.edu	37	1	175092555	175092555	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:175092555C>T	uc001gkl.1	+	12	2783	c.2670C>T	c.(2668-2670)AAC>AAT	p.N890N		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	890	Fibronectin type-III 8.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GCCCCAAAAACCTAGTGACTG	0.483													13	57					0	0	0.001855	0	0
FAM5C	339479	broad.mit.edu	37	1	190234128	190234128	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:190234128C>T	uc001gse.1	-	4	717	c.485G>A	c.(484-486)GGA>GAA	p.G162E	FAM5C_uc010pot.1_Missense_Mutation_p.G60E	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	162						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGAATCACTTCCTTCAGCTCG	0.428													9	32					0	0	0.008291	0	0
RGS18	64407	broad.mit.edu	37	1	192128357	192128357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:192128357G>A	uc001gsg.2	+	2	303	c.127G>A	c.(127-129)GAA>AAA	p.E43K		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	43					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CAGAGCTAAGGAAAAAAGAAA	0.393													8	20					0	0	0.004482	0	0
CFH	3075	broad.mit.edu	37	1	196716319	196716319	+	Missense_Mutation	SNP	C	T	T	rs460897		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:196716319C>T	uc001gtj.3	+	22	3812	c.3572C>T	c.(3571-3573)TCG>TTG	p.S1191L		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1191	Sushi 20.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AAGCTTTATTCGAGAACAGGT	0.383													6	83					0	0	0.001855	0	0
CFHR1	3078	broad.mit.edu	37	1	196801023	196801023	+	Missense_Mutation	SNP	C	T	T	rs16840561	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:196801023C>T	uc001gtn.2	+	6	1001	c.887C>T	c.(886-888)GCT>GTT	p.A296V	CFHR1_uc001gtm.2_Missense_Mutation_p.A200V	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	296	Sushi 5.				complement activation	extracellular space					0						GGTGAATCAGCTGAATTTGTG	0.398													4	89					0	0	0.004482	0	0
ASPM	259266	broad.mit.edu	37	1	197060024	197060024	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:197060024G>A	uc001gtu.2	-	23	9849	c.9592C>T	c.(9592-9594)CGT>TGT	p.R3198C	ASPM_uc001gtv.2_Missense_Mutation_p.R1613C|ASPM_uc001gtw.3_Missense_Mutation_p.R1046C	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3198	IQ 38.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TGCTTTTTACGGAGGAGAAAA	0.358													12	60					0	0	0.002450	0	0
ASPM	259266	broad.mit.edu	37	1	197074187	197074187	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:197074187A>G	uc001gtu.2	-	18	4451	c.4194T>C	c.(4192-4194)GTT>GTC	p.V1398V	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1398	IQ 2.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCTGAATTGTAACTGTAGCCC	0.299													17	62					0	0	0.007413	0	0
CRB1	23418	broad.mit.edu	37	1	197297845	197297845	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:197297845G>A	uc001gtz.2	+	2	499	c.364G>A	c.(364-366)GGA>AGA	p.G122R	CRB1_uc010poz.1_Missense_Mutation_p.G53R|CRB1_uc001gty.1_Missense_Mutation_p.G122R|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G122R|CRB1_uc010ppb.1_Missense_Mutation_p.G122R	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	122	Extracellular (Potential).|EGF-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTGCCAACATGGAGGTATTTG	0.493													5	26					0	0	0.000602	0	0
DENND1B	163486	broad.mit.edu	37	1	197552297	197552297	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:197552297G>A	uc001guf.3	-	15	1472	c.1134C>T	c.(1132-1134)CTC>CTT	p.L378L	DENND1B_uc010ppe.1_Silent_p.L358L|DENND1B_uc010ppf.1_Intron|DENND1B_uc001gue.3_Silent_p.L348L	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	378	dDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						TAAAAAGCTGGAGGTTAATGG	0.383													17	70					0	0	0.008871	0	0
PTPRC	5788	broad.mit.edu	37	1	198711437	198711437	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:198711437G>A	uc001gur.1	+	25	2812	c.2632G>A	c.(2632-2634)GAT>AAT	p.D878N	PTPRC_uc001gus.1_Missense_Mutation_p.D830N|PTPRC_uc001gut.1_Missense_Mutation_p.D717N	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	878	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GAACAAAGTGGATGTTTATGG	0.438													23	92					0	0	0.012319	0	0
GPR25	2848	broad.mit.edu	37	1	200843206	200843206	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:200843206C>T	uc001gvn.1	+	1	1041	c.1041C>T	c.(1039-1041)TTC>TTT	p.F347F		NM_005298	NP_005289	O00155	GPR25_HUMAN	G protein-coupled receptor 25	347	Cytoplasmic (Potential).					integral to plasma membrane				ovary(1)	1						GTTCCGTGTTCCGTTGCCGGG	0.741													3	10					0	0	0.009096	0	0
C1orf106	55765	broad.mit.edu	37	1	200868692	200868692	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:200868692G>A	uc001gvo.2	+	3	432	c.402G>A	c.(400-402)CTG>CTA	p.L134L	C1orf106_uc010ppm.1_Silent_p.L49L	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	134	Potential.									skin(2)|ovary(1)	3						AGGCCTGCCTGGAGGAGCTGA	0.652													7	18					0	0	0.001984	0	0
IGFN1	91156	broad.mit.edu	37	1	201182705	201182705	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:201182705C>T	uc001gwc.2	+	1	936	c.164C>T	c.(163-165)TCC>TTC	p.S55F	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGTTCCACATCCAGATACAAG	0.587													8	54					0	0	0.004482	0	0
TIMM17A	10440	broad.mit.edu	37	1	201924657	201924657	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:201924657G>A	uc001gxc.2	+	1	39	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_006335	NP_006326	Q99595	TI17A_HUMAN	translocase of inner mitochondrial membrane 17	1					protein targeting to mitochondrion	integral to membrane|mitochondrial inner membrane presequence translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity				0						GAGTCAAGATGGAGGAGTACG	0.617													16	53					0	0	0.004990	0	0
ATP2B4	493	broad.mit.edu	37	1	203696545	203696545	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:203696545G>A	uc001gzw.2	+	20	4039	c.3155G>A	c.(3154-3156)CGA>CAA	p.R1052Q	ATP2B4_uc001gzv.2_Missense_Mutation_p.R1052Q|ATP2B4_uc009xaq.2_Missense_Mutation_p.R1052Q|ATP2B4_uc001gzx.2_Missense_Mutation_p.R83Q|ATP2B4_uc009xar.2_Missense_Mutation_p.R47Q|ATP2B4_uc010pqj.1_5'Flank|uc010pqk.1_5'Flank|SNORA77_uc001gzy.1_5'Flank	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1052	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ATACCTACCCGATCCCTGAAG	0.532													19	73					0	0	0.007413	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204423835	204423835	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:204423835G>A	uc001haw.2	-	13	2507	c.2028C>T	c.(2026-2028)TTC>TTT	p.F676F	PIK3C2B_uc010pqv.1_Silent_p.F676F|PIK3C2B_uc001hax.1_Silent_p.F676F|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	676					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GGTACTTGGAGAAGTGAGCTC	0.557													22	161					0	0	0.014323	0	0
NUAK2	81788	broad.mit.edu	37	1	205273440	205273440	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:205273440G>A	uc001hce.2	-	7	1152	c.1025C>T	c.(1024-1026)CCC>CTC	p.P342L		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	342					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CTCCAGGAGGGGGCGGGAGGA	0.672													8	25					0	0	0.006214	0	0
CR2	1380	broad.mit.edu	37	1	207641898	207641898	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:207641898C>T	uc001hfw.2	+	3	566	c.472C>T	c.(472-474)CCT>TCT	p.P158S	CR2_uc001hfv.2_Missense_Mutation_p.P158S|CR2_uc009xch.2_Missense_Mutation_p.P158S|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	158	Sushi 3.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						TCCAGCACTTCCTATGATCCA	0.413													5	50					0	0	0.000602	0	0
KCNH1	3756	broad.mit.edu	37	1	211276866	211276866	+	Silent	SNP	G	A	A	rs138645753	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:211276866G>A	uc001hib.2	-	3	452	c.282C>T	c.(280-282)TCC>TCT	p.S94S	KCNH1_uc001hic.2_Silent_p.S94S	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	94	PAC.|Cytoplasmic (Potential).|PAS.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GAATTTCAAAGGAATTCATCT	0.358													9	32					0	0	0.004482	0	0
FAM71A	149647	broad.mit.edu	37	1	212798721	212798721	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:212798721G>A	uc001hjk.2	+	1	906	c.502G>A	c.(502-504)GAA>AAA	p.E168K	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	168										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TGCCTATTGGGAAAAACTAAT	0.498													34	144					0	0	0.003755	0	0
GPATCH2	55105	broad.mit.edu	37	1	217793136	217793136	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:217793136G>A	uc001hlf.1	-	2	858	c.762C>T	c.(760-762)CTC>CTT	p.L254L	GPATCH2_uc001hlg.3_Silent_p.L254L	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	254						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		TTTCACTCATGAGCTCATCTG	0.289													4	34					0	0	0.009096	0	0
OBSCN	84033	broad.mit.edu	37	1	228509380	228509380	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:228509380C>G	uc009xez.1	+	55	14882	c.14838C>G	c.(14836-14838)ATC>ATG	p.I4946M	OBSCN_uc001hsn.2_Missense_Mutation_p.I4946M	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4946	Ig-like 48.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACCATCACATCGACCAGCTTG	0.622													14	42					0	0	0.002450	0	0
OBSCN	84033	broad.mit.edu	37	1	228560760	228560760	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:228560760G>A	uc009xez.1	+	94	22325	c.22281G>A	c.(22279-22281)CGG>CGA	p.R7427R	OBSCN_uc001hsr.1_Silent_p.R2056R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7427					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACATCTCCCGGATCCTGAAGG	0.637													9	29					0	0	0.006214	0	0
URB2	9816	broad.mit.edu	37	1	229770924	229770924	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:229770924C>T	uc001hts.1	+	4	700	c.564C>T	c.(562-564)GTC>GTT	p.V188V	URB2_uc009xfd.1_Silent_p.V188V	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	188						nucleolus				central_nervous_system(2)|ovary(1)	3						AGCAGCAGGTCAACCCAAGAC	0.612													11	56					0	0	0.010729	0	0
PCNXL2	80003	broad.mit.edu	37	1	233190095	233190095	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:233190095C>T	uc001hvl.2	-	25	4505	c.4270G>A	c.(4270-4272)GAT>AAT	p.D1424N	PCNXL2_uc001hvk.1_Missense_Mutation_p.D76N|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1424						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TTGAGGTCATCTGAAGCCAAA	0.453													4	28					0	0	0.009096	0	0
KIAA1804	84451	broad.mit.edu	37	1	233482265	233482265	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:233482265G>A	uc001hvt.3	+	2	1144	c.883G>A	c.(883-885)GAA>AAA	p.E295K	KIAA1804_uc001hvs.1_Missense_Mutation_p.E295K	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	295	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GTTGGCGAGGGAATGGCACAG	0.433													6	30					0	0	0.001168	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514947	233514947	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:233514947C>T	uc001hvt.3	+	9	2456	c.2195C>T	c.(2194-2196)TCG>TTG	p.S732L	KIAA1804_uc001hvu.3_Missense_Mutation_p.S178L	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	732					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				CTTCTGGCATCGGTGGCTCTG	0.517													13	46					0	0	0.001855	0	0
ZNF238	10472	broad.mit.edu	37	1	244217202	244217203	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:244217202_244217203CC>TT	uc001iae.2	+	1	621_622	c.99_100CC>TT	c.(97-102)GCCCAG>GCTTAG	p.Q34*	ZNF238_uc001iad.3_Nonsense_Mutation_p.Q43*|ZNF238_uc001iaf.1_Nonsense_Mutation_p.Q34*	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	34	BTB.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			TGGGAGATGCCCAGTTCCGAGC	0.49													15	57					0	0	0.004672	0	0
VN1R5	317705	broad.mit.edu	37	1	247419777	247419777	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:247419777C>T	uc010pyu.1	+	2	404	c.404C>T	c.(403-405)ACC>ATC	p.T135I		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	135	Helical; Name=4; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			TCCATCTGCACCCCCTGCCTC	0.478													9	70					0	0	0.004482	0	0
OR2B11	127623	broad.mit.edu	37	1	247614409	247614409	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:247614409G>A	uc010pyx.1	-	1	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GGGTGTAGGTGAAGGGATTGA	0.483													23	178					0	0	0.013726	0	0
OR2M4	26245	broad.mit.edu	37	1	248402677	248402677	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:248402677G>A	uc010pzh.1	+	1	447	c.447G>A	c.(445-447)TGG>TGA	p.W149*		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TTGCTTCCTGGACCTTGGGGT	0.463													15	80					0	0	0.003163	0	0
PRKCQ	5588	broad.mit.edu	37	10	6553016	6553016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:6553016C>T	uc001ijj.1	-	3	334	c.259G>A	c.(259-261)GTG>ATG	p.V87M	PRKCQ_uc009xim.1_Missense_Mutation_p.V87M|PRKCQ_uc001iji.1_Missense_Mutation_p.V120M|PRKCQ_uc009xin.1_Missense_Mutation_p.V51M|PRKCQ_uc010qax.1_Translation_Start_Site	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	87	C2.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						TAGAGCTCCACGGTGGTTTCA	0.483													16	95					0	0	0.004007	0	0
ITIH5	80760	broad.mit.edu	37	10	7615118	7615118	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:7615118G>A	uc001ijq.2	-	11	2098	c.2019C>T	c.(2017-2019)ATC>ATT	p.I673I	ITIH5_uc001ijp.2_Silent_p.I459I|ITIH5_uc001ijr.1_Silent_p.I673I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	673					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						ATGTTTTAGAGATTTTAATTC	0.343													7	21					0	0	0.001984	0	0
USP6NL	9712	broad.mit.edu	37	10	11504989	11504989	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:11504989G>A	uc001ikt.3	-	15	2259	c.1938C>T	c.(1936-1938)TTC>TTT	p.F646F	USP6NL_uc001iks.1_Silent_p.F663F	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	646						intracellular	Rab GTPase activator activity				0						TGGCAGTAGGGAAGTGTTTGG	0.547													3	26					0	0	0.004672	0	0
MCM10	55388	broad.mit.edu	37	10	13234455	13234455	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:13234455T>C	uc001ima.2	+	13	1736	c.1635T>C	c.(1633-1635)ATT>ATC	p.I545I	MCM10_uc001imb.2_Silent_p.I544I|MCM10_uc001imc.2_Silent_p.I544I	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	545					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TTTCAGGGATTATGGGGAGCC	0.557													18	62					0	0	0.012319	0	0
CACNB2	783	broad.mit.edu	37	10	18823025	18823025	+	Missense_Mutation	SNP	G	A	A	rs112164873		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:18823025G>A	uc001ipr.2	+	11	1135	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Missense_Mutation_p.E335K|CACNB2_uc001ipt.2_Missense_Mutation_p.E321K|CACNB2_uc001ipu.2_Missense_Mutation_p.E331K|CACNB2_uc001ipv.2_Missense_Mutation_p.E307K|CACNB2_uc009xka.1_Missense_Mutation_p.E293K|CACNB2_uc001ipw.2_Missense_Mutation_p.E266K|CACNB2_uc001ipx.2_Missense_Mutation_p.E304K|CACNB2_uc001ipz.2_Missense_Mutation_p.E281K|CACNB2_uc001ipy.2_Missense_Mutation_p.E305K|CACNB2_uc010qco.1_Missense_Mutation_p.E273K|CACNB2_uc001iqa.2_Missense_Mutation_p.E311K|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	359					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GAGTGAAATCGAAAGGATTTT	0.383													9	42					0	0	0.010729	0	0
PLXDC2	84898	broad.mit.edu	37	10	20506496	20506496	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:20506496C>T	uc001iqg.1	+	11	1901	c.1264C>T	c.(1264-1266)CCT>TCT	p.P422S	PLXDC2_uc001iqh.1_Missense_Mutation_p.P373S|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	422	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CACCAGCCTCCCTACAGAAGG	0.428													11	22					0	0	0.013537	0	0
MPP7	143098	broad.mit.edu	37	10	28413025	28413025	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:28413025C>T	uc001iua.1	-	10	954	c.550G>A	c.(550-552)GAA>AAA	p.E184K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E184K|MPP7_uc009xla.2_Missense_Mutation_p.E184K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	184	PDZ.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TCCCTAAGTTCATCACCAACA	0.358													22	87					0	0	0.003330	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316491	30316491	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:30316491A>T	uc001iux.2	-	2	2645	c.2586T>A	c.(2584-2586)AGT>AGA	p.S862R	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.S724R|KIAA1462_uc009xle.1_Missense_Mutation_p.S862R	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	862	Ser-rich.									ovary(4)	4						GCTCCGCCTCACTCTCCTCAc	0.458													19	66					0	0	0.007413	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37419225	37419225	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:37419225C>T	uc001iza.1	+	3	360	c.261C>T	c.(259-261)CTC>CTT	p.L87L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	143	ANK 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACACGGCTCTCCATTATGCTG	0.443													3	21					0	0	0.009096	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430661	37430661	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:37430661G>A	uc001iza.1	+	7	767	c.668G>A	c.(667-669)GGA>GAA	p.G223E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	279						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACATCTGCAGGAACACCTGAT	0.348													8	28					0	0	0.003080	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37486234	37486234	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:37486234C>T	uc001iza.1	+	28	2571	c.2472C>T	c.(2470-2472)TTC>TTT	p.F824F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	880						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CATCTGCCTTCGAGGTATTTA	0.328													15	101					0	0	0.004007	0	0
RBP3	5949	broad.mit.edu	37	10	48388012	48388012	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:48388012C>T	uc001jez.2	-	1	2980	c.2866G>A	c.(2866-2868)GAG>AAG	p.E956K		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	956	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCCCCCAGCTCGGCAGAGGCA	0.632													20	65					0	0	0.008871	0	0
MAPK8	5599	broad.mit.edu	37	10	49618124	49618124	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:49618124G>A	uc009xnz.2	+	5	587	c.363G>A	c.(361-363)ATG>ATA	p.M121I	MAPK8_uc001jgl.2_Missense_Mutation_p.M121I|MAPK8_uc001jgm.2_Missense_Mutation_p.M121I|MAPK8_uc001jgo.2_Missense_Mutation_p.M121I|MAPK8_uc009xoa.2_Missense_Mutation_p.M121I|MAPK8_uc001jgn.2_Missense_Mutation_p.M121I|MAPK8_uc010qgk.1_Missense_Mutation_p.M121I|MAPK8_uc001jgp.2_Missense_Mutation_p.M121I|MAPK8_uc001jgq.2_Missense_Mutation_p.M121I	NM_139047	NP_620635	P45983	MK08_HUMAN	mitogen-activated protein kinase 8 isoform JNK1	121	Protein kinase.				activation of pro-apoptotic gene products|cellular response to mechanical stimulus|induction of apoptosis by intracellular signals|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of apoptosis|negative regulation of protein binding|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of deacetylase activity|regulation of protein localization|regulation of sequence-specific DNA binding transcription factor activity|response to UV|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|histone deacetylase binding|histone deacetylase regulator activity|JUN kinase activity|protein binding			central_nervous_system(3)|lung(2)|stomach(1)|ovary(1)|kidney(1)	8		Ovarian(717;0.0221)|Lung SC(717;0.113)|all_neural(218;0.116)		Epithelial(53;3.46e-65)|Lung(62;0.125)		TGATTCAGATGGAGCTAGATC	0.398													20	79					0	0	0.010504	0	0
CHAT	1103	broad.mit.edu	37	10	50859978	50859978	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:50859978G>A	uc001jhz.2	+	11	1713	c.1560G>A	c.(1558-1560)GGG>GGA	p.G520G	CHAT_uc001jhv.1_Silent_p.G402G|CHAT_uc001jhx.1_Silent_p.G402G|CHAT_uc001jhy.1_Silent_p.G402G|CHAT_uc001jia.2_Silent_p.G402G|CHAT_uc010qgs.1_Silent_p.G402G	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	520	Coenzyme A binding.				neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	ACAACTATGGGAAAACATTCA	0.413													5	26					0	0	0.000602	0	0
OGDHL	55753	broad.mit.edu	37	10	50946248	50946248	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:50946248C>T	uc001jie.2	-	18	2522	c.2380G>A	c.(2380-2382)GAT>AAT	p.D794N	OGDHL_uc009xog.2_Missense_Mutation_p.D821N|OGDHL_uc010qgt.1_Missense_Mutation_p.D737N|OGDHL_uc010qgu.1_Missense_Mutation_p.D585N	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	794					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGGTAGGCATCCGAGTCATCA	0.622													11	70					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	10	52389901	52389901	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:52389901C>T	uc001jjf.1	+	2		c.594C>T								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		GGGTCGTTTTCCTGAAAAATT	0.408													5	11					0	0	0.001168	0	0
CSTF2T	23283	broad.mit.edu	37	10	53458193	53458193	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:53458193G>A	uc001jjp.2	-	1	1163	c.1117C>T	c.(1117-1119)CGT>TGT	p.R373C	PRKG1_uc001jjm.2_Intron|PRKG1_uc001jjn.2_Intron|PRKG1_uc001jjo.2_Intron	NM_015235	NP_056050	Q9H0L4	CSTFT_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit	373	Gly-rich.				mRNA processing	nucleus	nucleotide binding|RNA binding			ovary(1)	1				COAD - Colon adenocarcinoma(2;0.00736)|Colorectal(2;0.00898)|all cancers(4;0.0188)|GBM - Glioblastoma multiforme(4;0.0778)|Epithelial(53;0.122)		GAAGGGCCACGAGTGTCATGA	0.562													19	90					0	0	0.010504	0	0
SLC16A9	220963	broad.mit.edu	37	10	61414328	61414328	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:61414328G>A	uc010qig.1	-	5	905	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	152	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CAGCATATATGAAAAGGCCAA	0.408													12	64					0	0	0.013537	0	0
ANK3	288	broad.mit.edu	37	10	62038626	62038626	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:62038626C>T	uc001jky.2	-	4	512	c.320G>A	c.(319-321)GGA>GAA	p.G107E	ANK3_uc010qih.1_Missense_Mutation_p.G90E|ANK3_uc001jkz.3_Missense_Mutation_p.G101E|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	107	ANK 2.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCTGTGTTTCCTTTCTGTGA	0.388													17	95					0	0	0.004990	0	0
TTC18	118491	broad.mit.edu	37	10	75104921	75104921	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:75104921C>T	uc009xrc.2	-	6	632	c.511G>A	c.(511-513)GTC>ATC	p.V171I	TTC18_uc001jty.2_Missense_Mutation_p.V171I|TTC18_uc009xrd.1_5'UTR	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	171							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					TCCAACGTGACCTTCAGTAGA	0.473													21	79					0	0	0.008871	0	0
KCNMA1	3778	broad.mit.edu	37	10	78870041	78870041	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:78870041C>T	uc001jxn.2	-	8	1198	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	KCNMA1_uc001jxj.2_Missense_Mutation_p.E341K|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.E161K|KCNMA1_uc001jxl.1_5'UTR|KCNMA1_uc001jxo.2_Missense_Mutation_p.E341K|KCNMA1_uc001jxm.2_Missense_Mutation_p.E341K|KCNMA1_uc001jxq.2_Missense_Mutation_p.E341K	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	341					cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	TAGACACATTCCCAGTAGGTG	0.453													28	194					0	0	0.010818	0	0
RGR	5995	broad.mit.edu	37	10	86017671	86017672	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:86017671_86017672GG>AA	uc001kdc.1	+	6	691_692	c.653_654GG>AA	c.(652-654)AGG>AAA	p.R218K	RGR_uc001kdd.1_Missense_Mutation_p.R222K|RGR_uc001kde.1_Intron	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	218	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CTGCCAGCAAGGACGCTGCTGC	0.554													7	46					0	0	0.004672	0	0
ANKRD22	118932	broad.mit.edu	37	10	90583082	90583082	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:90583082G>A	uc001kfj.3	-	5	821	c.453C>T	c.(451-453)ATC>ATT	p.I151I		NM_144590	NP_653191	Q5VYY1	ANR22_HUMAN	ankyrin repeat domain 22	151	ANK 4.										0		Colorectal(252;0.0163)		Colorectal(12;6.29e-05)|COAD - Colon adenocarcinoma(12;7.69e-05)		AGAGCAGAGGGATAAGAGACT	0.488													22	109					0	0	0.003954	0	0
SLC16A12	387700	broad.mit.edu	37	10	91196038	91196038	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:91196038G>A	uc001kgm.2	-	7	1368	c.977C>T	c.(976-978)GCC>GTC	p.A326V	SLC16A12_uc001kgl.2_5'UTR	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	326	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						CATTCCCACGGCAAAGAGGTA	0.458													5	39					0	0	0.003080	0	0
FGFBP3	143282	broad.mit.edu	37	10	93668130	93668130	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:93668130G>A	uc001khq.3	-	2	779	c.597C>T	c.(595-597)CCC>CCT	p.P199P		NM_152429	NP_689642	Q8TAT2	FGFP3_HUMAN	fibroblast growth factor binding protein 3	199					positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of vascular permeability	extracellular region	fibroblast growth factor binding|heparin binding				0		Colorectal(252;0.162)				TCCTCTCTGAGGGGTTTTCTT	0.731													8	41					0	0	0.004482	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540261	96540261	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:96540261C>T	uc010qnz.1	+	4	487	c.487C>T	c.(487-489)CCC>TCC	p.P163S	CYP2C19_uc009xus.1_Missense_Mutation_p.P28S|CYP2C19_uc010qny.1_Missense_Mutation_p.P141S	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	163					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTTAGCTTCACCCTGTGATCC	0.313													19	99					0	0	0.012319	0	0
BLNK	29760	broad.mit.edu	37	10	97960771	97960771	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:97960771G>A	uc001kls.3	-	14	1156	c.978C>T	c.(976-978)CCC>CCT	p.P326P	BLNK_uc001kme.3_Silent_p.P221P|BLNK_uc001klt.3_Silent_p.P217P|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Silent_p.P244P|BLNK_uc001klv.3_Silent_p.P221P|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Silent_p.P303P|BLNK_uc001kly.3_Silent_p.P326P|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Silent_p.P303P|BLNK_uc001kmb.3_Silent_p.P122P|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Silent_p.P244P|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	326					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ATGAAAAGCTGGGTAGGGGCC	0.398													23	94					0	0	0.004656	0	0
BLNK	29760	broad.mit.edu	37	10	97976469	97976469	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:97976469C>T	uc001kls.3	-	7	725	c.547G>A	c.(547-549)GAA>AAA	p.E183K	BLNK_uc001kme.3_Missense_Mutation_p.E101K|BLNK_uc001klt.3_Missense_Mutation_p.E97K|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Missense_Mutation_p.E101K|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.E183K|BLNK_uc001kly.3_Missense_Mutation_p.E183K|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.E183K|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Missense_Mutation_p.E101K|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	183	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		TCATTATCTTCCACGGGGACC	0.378													3	27					0	0	0.009096	0	0
TLL2	7093	broad.mit.edu	37	10	98154973	98154973	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:98154973T>G	uc001kml.1	-	13	1923	c.1697A>C	c.(1696-1698)AAA>ACA	p.K566T	TLL2_uc009xvf.1_Missense_Mutation_p.K544T	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	566	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		AAAGCCCGCTTTATTGATAGA	0.468													27	130					0	0	0.009535	0	0
CRTAC1	55118	broad.mit.edu	37	10	99696020	99696020	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:99696020G>A	uc001kou.1	-	3	684	c.328C>T	c.(328-330)CGG>TGG	p.R110W	CRTAC1_uc001kov.2_Missense_Mutation_p.R99W|CRTAC1_uc001kot.1_5'UTR	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	110	FG-GAP 2; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		TTCCCCTGCCGGTCCCGCAGC	0.622													7	44					0	0	0.006214	0	0
LBX1	10660	broad.mit.edu	37	10	102987042	102987042	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:102987042G>A	uc001ksx.2	-	2	976	c.831C>T	c.(829-831)ATC>ATT	p.I277I	uc010qpy.1_5'Flank	NM_006562	NP_006553	P52954	LBX1_HUMAN	ladybird homeobox 1	277	Asp/Glu-rich (highly acidic).				muscle organ development		sequence-specific DNA binding				0		Colorectal(252;0.234)		Epithelial(162;3.22e-09)|all cancers(201;1.79e-07)		CGTCCACGTCGATCTCTTCGT	0.726													44	143					0	0	0.014410	0	0
C10orf76	79591	broad.mit.edu	37	10	103792895	103792895	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:103792895G>A	uc009xwy.1	-	4	296	c.194C>T	c.(193-195)TCT>TTT	p.S65F	C10orf76_uc001kui.2_Missense_Mutation_p.S65F	NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	65						integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		ACCATCAAGAGATTCCAGCTT	0.438													16	66					0	0	0.003163	0	0
C10orf79	80217	broad.mit.edu	37	10	105893391	105893391	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:105893391C>T	uc001kxw.2	-	35	4699	c.4583G>A	c.(4582-4584)AGA>AAA	p.R1528K	C10orf79_uc009xxq.2_Missense_Mutation_p.R807K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1528											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTGACGATCTCTTGAAAAAAA	0.274													5	34					0	0	0.001168	0	0
CCDC147	159686	broad.mit.edu	37	10	106207461	106207461	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:106207461G>A	uc001kyh.2	+	16	2396	c.2262G>A	c.(2260-2262)AAG>AAA	p.K754K		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	754	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACTAGGAAAAGGAGAAACTCT	0.542													15	82					0	0	0.002450	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133930700	133930700	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:133930700G>A	uc001lkx.3	+	2	255	c.255G>A	c.(253-255)AAG>AAA	p.K85K		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGAAGATGAAGGAGCTACAGG	0.592													8	43					0	0	0.003080	0	0
AP2A2	161	broad.mit.edu	37	11	985475	985475	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:985475C>T	uc001lss.2	+	8	1036	c.855C>T	c.(853-855)ACC>ACT	p.T285T	AP2A2_uc001lst.1_Silent_p.T286T|AP2A2_uc009yco.1_RNA	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	285					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		GCCTGGAGACCATCCTGAACA	0.602													10	81					0	0	0.006214	0	0
OR52B4	143496	broad.mit.edu	37	11	4388791	4388791	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:4388791G>A	uc010qye.1	-	1	735	c.735C>T	c.(733-735)TCC>TCT	p.S245S		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCAGACATGGGAGCCAAATG	0.453													15	63					0	0	0.003163	0	0
OR51D1	390038	broad.mit.edu	37	11	4661144	4661144	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:4661144T>G	uc010qyk.1	+	1	124	c.124T>G	c.(124-126)TTC>GTC	p.F42V		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	42	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGGCTGGCTTTCCCACTGTG	0.517													8	48					0	0	0.003080	0	0
OR51F1	256892	broad.mit.edu	37	11	4790947	4790947	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:4790947C>T	uc010qyl.1	-	1	201	c.201G>A	c.(199-201)AGG>AGA	p.R67R		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	67						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGGCTGATAGCCTGAAGAGGA	0.443													13	27					0	0	0.001855	0	0
OR51V1	283111	broad.mit.edu	37	11	5221006	5221006	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:5221006G>A	uc010qyz.1	-	1	925	c.925C>T	c.(925-927)CAT>TAT	p.H309Y		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATTCTGGTATGAATCTGTTGG	0.388													12	33					0	0	0.001855	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530452	5530452	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:5530452T>C	uc001may.1	-	2	423	c.337A>G	c.(337-339)AGT>GGT	p.S113G	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	113										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GATCCAGGACTTGGGCCCTGG	0.612													12	53					0	0	0.001855	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530615	5530615	+	Silent	SNP	G	A	A	rs139187349		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:5530615G>A	uc001may.1	-	2	260	c.174C>T	c.(172-174)CCC>CCT	p.P58P	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	58	Ubiquitin-like.									ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAAGCTGATCGGGGTGGGCCT	0.507													30	106					0	0	0.012213	0	0
OR52N4	390072	broad.mit.edu	37	11	5776098	5776098	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:5776098G>A	uc001mbu.2	+	1	176	c.128G>A	c.(127-129)GGG>GAG	p.G43E	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		GCTATGGTAGGGAATTGTGGA	0.453													15	73					0	0	0.002450	0	0
DNHD1	144132	broad.mit.edu	37	11	6519800	6519800	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:6519800C>T	uc001mdw.3	+	3	919	c.355C>T	c.(355-357)CAA>TAA	p.Q119*	DNHD1_uc001mdp.2_Nonsense_Mutation_p.Q119*	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	119					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ACCCTGGGTCCAAACCCACCT	0.562													18	136					0	0	0.006122	0	0
ZNF215	7762	broad.mit.edu	37	11	6977643	6977643	+	Nonsense_Mutation	SNP	C	T	T	rs142083471		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:6977643C>T	uc001mey.2	+	7	2023	c.1435C>T	c.(1435-1437)CGA>TGA	p.R479*	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Nonsense_Mutation_p.R241*|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	479	C2H2-type 3.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		CTCTCTTATTCGACACCAAAT	0.368													10	63					0	0	0.013537	0	0
LOC494141	494141	broad.mit.edu	37	11	18231989	18231989	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:18231989C>T	uc009yhh.2	+	2		c.1013C>T			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						CAAGGTTTTCCAAAAAATCTG	0.413													7	30					0	0	0.001984	0	0
IGSF22	283284	broad.mit.edu	37	11	18732255	18732255	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:18732255C>T	uc009yht.2	-	16	2709	c.2519G>A	c.(2518-2520)CGA>CAA	p.R840Q	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(4)|large_intestine(2)|kidney(1)	7						TTTCTTCCTTCGTTCTACAAT	0.567													10	46					0	0	0.006214	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955376	18955376	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:18955376C>T	uc001mpg.2	-	1	1174	c.956G>A	c.(955-957)AGA>AAA	p.R319K		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	319	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CTGCTCCAATCTGCTTCCCGA	0.547													10	88					0	0	0.010729	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955419	18955419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:18955419C>T	uc001mpg.2	-	1	1131	c.913G>A	c.(913-915)GGA>AGA	p.G305R		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	305	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGCTGCCCTCCACCTTCATCC	0.552													13	80					0	0	0.001855	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955953	18955953	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:18955953G>A	uc001mpg.2	-	1	597	c.379C>T	c.(379-381)CCC>TCC	p.P127S		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	127	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TACCAGATGGGCCACAGGACG	0.592													16	85					0	0	0.006122	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077196	19077196	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:19077196C>T	uc001mph.2	-	2	842	c.754G>A	c.(754-756)GAT>AAT	p.D252N		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	252	Extracellular (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						ACATCAGAATCCTTCCAGATC	0.473													6	55					0	0	0.003080	0	0
FIBIN	387758	broad.mit.edu	37	11	27016142	27016142	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:27016142C>T	uc001mrd.2	+	1	515	c.69C>T	c.(67-69)CCC>CCT	p.P23P		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	23						extracellular region|Golgi apparatus					0						TCGATGGCCCCCTCTACCCAG	0.542													8	58					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	11	30902782	30902782	+	RNA	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:30902782G>T	uc001mss.1	-	15		c.2250C>A			uc009yjk.1_Missense_Mutation_p.P1164Q|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GGACTGAATTGGCTCTCCACT	0.498													6	56					0.00116845	0.00120062	0.001168	1	0
Unknown	0	broad.mit.edu	37	11	30953326	30953326	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:30953326C>T	uc009yjk.1	-	10	1302	c.1233G>A	c.(1231-1233)CGG>CGA	p.R411R	uc009yjl.1_3'UTR					RecName: Full=Doublecortin domain-containing protein 5;																		ACTGCGTTTTCCGTCCAGGTG	0.383													6	32					0	0	0.003080	0	0
CCDC73	493860	broad.mit.edu	37	11	32724469	32724469	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:32724469C>T	uc001mtv.2	-	4	273	c.229G>A	c.(229-231)GAA>AAA	p.E77K	CCDC73_uc001mtw.1_Missense_Mutation_p.E77K|CCDC73_uc009yjt.2_Missense_Mutation_p.E77K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	77	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					GCCAATGTTTCCTTTTGATTC	0.318													20	79					0	0	0.012319	0	0
ACCSL	390110	broad.mit.edu	37	11	44073250	44073250	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:44073250G>A	uc001mxw.1	+	5	809	c.753G>A	c.(751-753)ATG>ATA	p.M251I	ACCSL_uc009ykr.2_Missense_Mutation_p.M70I	NM_001031854	NP_001027025	Q4AC99	1A1L2_HUMAN	1-aminocyclopropane-1-carboxylate synthase	251							1-aminocyclopropane-1-carboxylate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(5)	5						CCCTGGCCATGGTTCTGTGTG	0.502													47	180					0	0	0.014410	0	0
DGKZ	8525	broad.mit.edu	37	11	46393044	46393044	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:46393044G>A	uc001ncn.1	+	9	1339	c.1214G>A	c.(1213-1215)AGC>AAC	p.S405N	DGKZ_uc001nch.1_Missense_Mutation_p.S233N|DGKZ_uc010rgq.1_Missense_Mutation_p.S160N|DGKZ_uc001ncj.1_Missense_Mutation_p.S183N|DGKZ_uc010rgr.1_Missense_Mutation_p.S182N|DGKZ_uc001nck.1_5'UTR|DGKZ_uc001ncl.2_Missense_Mutation_p.S217N|DGKZ_uc001ncm.2_Missense_Mutation_p.S216N|DGKZ_uc009yky.1_Missense_Mutation_p.S217N|DGKZ_uc010rgs.1_Missense_Mutation_p.S194N	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	405	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		CAGTACCACAGCAAGGTGTCC	0.706													14	36					0	0	0.002450	0	0
OR4A15	81328	broad.mit.edu	37	11	55136058	55136058	+	Silent	SNP	G	A	A	rs141225150	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:55136058G>A	uc010rif.1	+	1	699	c.699G>A	c.(697-699)GCG>GCA	p.A233A		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	233	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGGAGGAGCGATTTGTGCTG	0.413													11	66					0	0	0.010729	0	0
OR4C15	81309	broad.mit.edu	37	11	55322113	55322113	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:55322113C>T	uc010rig.1	+	1	331	c.331C>T	c.(331-333)CCT>TCT	p.P111S		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGGTGTCTCCTATGTACTT	0.433										HNSCC(20;0.049)			20	129					0	0	0.008871	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947181	57947181	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:57947181G>A	uc001nmj.2	+	3	581	c.265G>A	c.(265-267)GGG>AGG	p.G89R		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				GCTGGAGCATGGGGCAGCTTT	0.527													18	79					0	0	0.007413	0	0
OR1S2	219958	broad.mit.edu	37	11	57971483	57971483	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:57971483G>A	uc010rkb.1	-	1	171	c.171C>T	c.(169-171)CTC>CTT	p.L57L		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	57	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				CCACAATGATGAGCCCGTTCC	0.458													10	70					0	0	0.008291	0	0
DTX4	23220	broad.mit.edu	37	11	58962779	58962779	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:58962779C>T	uc001nns.2	+	7	1730	c.1473C>T	c.(1471-1473)TCC>TCT	p.S491S	DTX4_uc001nnr.2_Silent_p.S385S	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	491					Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				TCCCCCACTCCTTGCCTGGCC	0.562													16	34					0	0	0.004990	0	0
OR4D10	390197	broad.mit.edu	37	11	59245499	59245499	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:59245499G>A	uc001nnz.1	+	1	597	c.597G>A	c.(595-597)ATG>ATA	p.M199I		NM_001004705	NP_001004705	Q8NGI6	OR4DA_HUMAN	olfactory receptor, family 4, subfamily D,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AACTACTAATGATTTCCAACA	0.463													8	61					0	0	0.003080	0	0
CCDC86	79080	broad.mit.edu	37	11	60609774	60609774	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:60609774C>T	uc001nqa.2	+	1	346	c.177C>T	c.(175-177)CCC>CCT	p.P59P	CCDC86_uc001nqb.2_5'UTR	NM_024098	NP_077003	Q9H6F5	CCD86_HUMAN	coiled-coil domain containing 86	59	Pro-rich.				interspecies interaction between organisms	nucleus					0						TGGGGTCCCCCGAAAGGCCGC	0.692													10	46					0	0	0.008291	0	0
TUT1	64852	broad.mit.edu	37	11	62344694	62344694	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:62344694C>T	uc001nto.2	-	6	1382	c.1344G>A	c.(1342-1344)GTG>GTA	p.V448V	EEF1G_uc010rlw.1_5'Flank|TUT1_uc001ntp.1_5'UTR	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	410					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						GGAGGGTGTACACGAGGGGCC	0.607													13	55					0	0	0.002450	0	0
NXF1	10482	broad.mit.edu	37	11	62563933	62563934	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:62563933_62563934GG>AT	uc001nvf.1	-	14	1420_1421	c.1284_1285CC>AT	c.(1282-1287)GCCCGA>GCATGA	p.R429*	NXF1_uc001nvg.1_3'UTR|NXF1_uc009yog.1_Nonsense_Mutation_p.R472*	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	429	NTF2.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						GATACTAACCGGGCAGGGTTCT	0.559													22	64					0	0	0.004672	0	0
SLC22A10	387775	broad.mit.edu	37	11	63057858	63057858	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:63057858G>A	uc009yor.2	+	1	429	c.221G>A	c.(220-222)AGA>AAA	p.R74K	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Missense_Mutation_p.R22K	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	74	Extracellular (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						GCCCTCTTGAGAATCTCTATC	0.502													9	79					0	0	0.006214	0	0
LGALS12	85329	broad.mit.edu	37	11	63276341	63276341	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:63276341C>T	uc001nxa.2	+	3	657	c.316C>T	c.(316-318)CAT>TAT	p.H106Y	LGALS12_uc001nxb.2_Missense_Mutation_p.H106Y|LGALS12_uc001nxc.2_Missense_Mutation_p.H107Y|LGALS12_uc001nxd.2_Missense_Mutation_p.H45Y|LGALS12_uc001nxe.2_Missense_Mutation_p.H45Y|LGALS12_uc009yot.2_Missense_Mutation_p.H66Y	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	106	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CACCAAGCCCCATGTCATCTG	0.607													19	60					0	0	0.006122	0	0
SPDYC	387778	broad.mit.edu	37	11	64940289	64940289	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:64940289C>T	uc010rnz.1	+	6	651	c.651C>T	c.(649-651)TCC>TCT	p.S217S		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	217					cell cycle	nucleus	protein kinase binding				0						CCCACTGTTCCCCCTGTGGTT	0.647													16	44					0	0	0.003163	0	0
MALAT1	378938	broad.mit.edu	37	11	65273128	65273128	+	RNA	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:65273128T>G	uc010roh.1	+	1		c.7896T>G			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						CATAATCGGTTTCAAGGTAAC	0.473													17	84					0	0	0.007413	0	0
SCYL1	57410	broad.mit.edu	37	11	65298163	65298163	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:65298163C>T	uc001oea.1	+	7	990	c.913C>T	c.(913-915)CCT>TCT	p.P305S	SCYL1_uc009yqk.2_Missense_Mutation_p.P305S|SCYL1_uc001oeb.1_Missense_Mutation_p.P305S|SCYL1_uc001oec.1_Missense_Mutation_p.P305S|SCYL1_uc001oed.1_Missense_Mutation_p.P162S|SCYL1_uc001oee.1_5'UTR	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	305	Protein kinase.				regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						GGACGCATTCCCTGAGGATTT	0.597													24	72					0	0	0.003954	0	0
KLC2	64837	broad.mit.edu	37	11	66030323	66030323	+	Missense_Mutation	SNP	G	A	A	rs140572929		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:66030323G>A	uc010rov.1	+	5	811	c.568G>A	c.(568-570)GGG>AGG	p.G190R	KLC2_uc010row.1_Missense_Mutation_p.G190R|KLC2_uc009yra.2_Missense_Mutation_p.G190R|KLC2_uc001ohb.2_Missense_Mutation_p.G190R|KLC2_uc010rox.1_Missense_Mutation_p.G113R|KLC2_uc001ohc.2_Missense_Mutation_p.G190R|KLC2_uc001ohd.2_Missense_Mutation_p.G113R|KLC2_uc001ohe.1_Missense_Mutation_p.G51R	NM_001134775	NP_001128247	Q9H0B6	KLC2_HUMAN	kinesin light chain 2 isoform 1	190					blood coagulation	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0						TGGTCAGCATGGGGGCTACGA	0.592													15	97					0	0	0.004990	0	0
TPCN2	219931	broad.mit.edu	37	11	68855350	68855350	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:68855350C>T	uc001oos.2	+	25	2304	c.2188C>T	c.(2188-2190)CTG>TTG	p.L730L	TPCN2_uc010rqg.1_Silent_p.L548L|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	730	Cytoplasmic (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			CAGGGATATTCTGGAGGAGCC	0.622													5	30					0	0	0.000602	0	0
PPFIA1	8500	broad.mit.edu	37	11	70228206	70228206	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:70228206G>A	uc001opo.2	+	27	3761	c.3563G>A	c.(3562-3564)GGA>GAA	p.G1188E	PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_Missense_Mutation_p.G327E|PPFIA1_uc001ops.2_Missense_Mutation_p.G227E|uc001opt.1_Intron	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	1188					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			AATGTATCAGGAACACAGAGG	0.498											OREG0021174	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	21					0	0	0.009096	0	0
KRTAP5-10	387273	broad.mit.edu	37	11	71276910	71276910	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:71276910G>A	uc001oqt.1	+	1	302	c.277G>A	c.(277-279)GGC>AGC	p.G93S		NM_001012710	NP_001012728	Q6L8G5	KR510_HUMAN	keratin associated protein 5-10	93	7 X 4 AA repeats of C-C-X-P.					keratin filament				skin(1)	1						CTCCAAGGGGGGCTGTGGCTC	0.677													45	146					0	0	0.013114	0	0
UCP3	7352	broad.mit.edu	37	11	73717239	73717239	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:73717239C>T	uc001our.2	-	3	667	c.312G>A	c.(310-312)CAG>CAA	p.Q104Q	UCP3_uc001ous.2_Silent_p.Q104Q	NM_003356	NP_003347	P55916	UCP3_HUMAN	uncoupling protein 3 isoform UCP3L	104	Solcar 1.				mitochondrial transport|respiratory electron transport chain|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	binding			pancreas(1)	1	Breast(11;2.08e-05)					GGGTGTACACCTGCTTGACGG	0.612													13	58					0	0	0.003163	0	0
NEU3	10825	broad.mit.edu	37	11	74717525	74717525	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:74717525C>T	uc001ovw.2	+	3	1530	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	NEU3_uc001ovv.2_Silent_p.F448F|NEU3_uc010rrl.1_Silent_p.F349F|uc010rrm.1_5'Flank|uc001ovx.1_5'Flank	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	458										ovary(2)	2						CAAGCCAATTCAAAAGCAATT	0.468													20	83					0	0	0.014323	0	0
GDPD5	81544	broad.mit.edu	37	11	75150947	75150947	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:75150947G>A	uc001owo.3	-	16	2070	c.1533C>T	c.(1531-1533)ATC>ATT	p.I511I	GDPD5_uc001owp.3_Silent_p.I511I|GDPD5_uc001own.3_Silent_p.I266I|GDPD5_uc009yuc.2_Silent_p.I373I|GDPD5_uc009yud.2_Silent_p.I392I	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	511	Helical; (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						AGATGCCCACGATGAGGGTGA	0.632													10	60					0	0	0.008291	0	0
GDPD4	220032	broad.mit.edu	37	11	76982231	76982231	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:76982231A>C	uc001oyf.2	-	6	595	c.344T>G	c.(343-345)GTG>GGG	p.V115G		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	115	Helical; (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						GATAACCATCACAGTTATGCT	0.488													14	40					0	0	0.004007	0	0
ODZ4	26011	broad.mit.edu	37	11	78413133	78413134	+	Missense_Mutation	DNP	CC	TT	TT	rs57290930		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:78413133_78413134CC>TT	uc001ozl.3	-	28	4987_4988	c.4524_4525GG>AA	c.(4522-4527)GGGGCC>GGAACC	p.A1509T	ODZ4_uc009yvb.1_Missense_Mutation_p.A93T	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1509	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCACTGGGGGCCCCAGCAACGA	0.465													6	14					0	0	0.004672	0	0
ODZ4	26011	broad.mit.edu	37	11	78437253	78437253	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:78437253C>T	uc001ozl.3	-	23	3884	c.3421G>A	c.(3421-3423)GAA>AAA	p.E1141K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1141	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GATTCATATTCATAACCCACG	0.483													34	158					0	0	0.004878	0	0
ODZ4	26011	broad.mit.edu	37	11	78440604	78440604	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:78440604G>A	uc001ozl.3	-	22	3686	c.3223C>T	c.(3223-3225)CTG>TTG	p.L1075L		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1075	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CTGATCCTCAGGACAGATTTG	0.577													9	53					0	0	0.006214	0	0
ME3	10873	broad.mit.edu	37	11	86157451	86157451	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:86157451C>T	uc001pbz.2	-	12	1713	c.1459G>A	c.(1459-1461)GGA>AGA	p.G487R	ME3_uc001pca.2_Missense_Mutation_p.G487R|ME3_uc009yvk.2_Missense_Mutation_p.G487R	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	487					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	GCATTGTTTCCCTGCCCAGGA	0.557													13	75					0	0	0.001855	0	0
NAALAD2	10003	broad.mit.edu	37	11	89909215	89909215	+	Silent	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:89909215T>G	uc001pdf.3	+	15	1687	c.1578T>G	c.(1576-1578)CGT>CGG	p.R526R	NAALAD2_uc009yvx.2_Silent_p.R493R|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	526	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GCAGAGCCCGTTACACTAAGA	0.373													7	41					0	0	0.004482	0	0
FAT3	120114	broad.mit.edu	37	11	92086457	92086457	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:92086457C>T	uc001pdj.3	+	1	1196	c.1179C>T	c.(1177-1179)GTC>GTT	p.V393V		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	393	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTCCTGGTGTCGTGGTTGCTA	0.423										TCGA Ovarian(4;0.039)			94	450					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92616244	92616244	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:92616244C>T	uc001pdj.3	+	23	12639	c.12622C>T	c.(12622-12624)CCG>TCG	p.P4208S	FAT3_uc001pdi.3_Missense_Mutation_p.P648S	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4208	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAATGGCATCCCGTTCCGGAA	0.652										TCGA Ovarian(4;0.039)			72	299					0	0	0.014410	0	0
KDM4D	55693	broad.mit.edu	37	11	94731988	94731988	+	Silent	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:94731988G>T	uc001pfe.2	+	3	2284	c.1452G>T	c.(1450-1452)TCG>TCT	p.S484S		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	484					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCACAGCTTCGGGCCCAGAAC	0.617													3	33					0.004672	0.00479121	0.004672	1	0
CNTN5	53942	broad.mit.edu	37	11	100061868	100061868	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:100061868C>T	uc001pga.2	+	14	1930	c.1591C>T	c.(1591-1593)CTT>TTT	p.L531F	CNTN5_uc009ywv.1_Missense_Mutation_p.L531F|CNTN5_uc001pfz.2_Missense_Mutation_p.L531F|CNTN5_uc001pgb.2_Missense_Mutation_p.L457F|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	531	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AATAGCTATTCTTCCAGACGG	0.363													9	19					0	0	0.006214	0	0
KIAA1377	57562	broad.mit.edu	37	11	101834560	101834560	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:101834560C>T	uc001pgm.2	+	6	3064	c.2794C>T	c.(2794-2796)CCC>TCC	p.P932S	KIAA1377_uc001pgn.2_Missense_Mutation_p.P888S|KIAA1377_uc010run.1_Missense_Mutation_p.P733S|KIAA1377_uc009yxa.1_Missense_Mutation_p.P733S	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	932							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AGAATCAGTTCCCTTATGGAA	0.378													17	78					0	0	0.007413	0	0
TTC12	54970	broad.mit.edu	37	11	113222857	113222857	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:113222857C>T	uc001pnu.2	+	16	1479	c.1374C>T	c.(1372-1374)CTC>CTT	p.L458L	TTC12_uc001pnv.2_Silent_p.L464L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Silent_p.L308L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	458							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		TGGGAAACCTCAGTGCTGAGC	0.512													11	38					0	0	0.010729	0	0
SIDT2	51092	broad.mit.edu	37	11	117061423	117061423	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:117061423C>T	uc001pqh.1	+	18	1743	c.1702C>T	c.(1702-1704)CAT>TAT	p.H568Y	SIDT2_uc010rxe.1_Missense_Mutation_p.H568Y|SIDT2_uc001pqg.2_Missense_Mutation_p.H589Y|SIDT2_uc001pqi.1_Missense_Mutation_p.H565Y|SIDT2_uc001pqj.1_5'Flank	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	568	Extracellular (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		TGCTTGCTATCATGTGTGCCC	0.507													9	44					0	0	0.008291	0	0
UBE4A	9354	broad.mit.edu	37	11	118239362	118239362	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:118239362C>T	uc001psw.2	+	3	267	c.138C>T	c.(136-138)AGC>AGT	p.S46S	UBE4A_uc001psv.2_Silent_p.S46S	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	46					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TCCCAGCTAGCCCAGATGACT	0.428													43	243					0	0	0.013114	0	0
CXCR5	643	broad.mit.edu	37	11	118764404	118764404	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:118764404G>A	uc001pue.3	+	2	261	c.151G>A	c.(151-153)GCC>ACC	p.A51T	CXCR5_uc001puf.2_Missense_Mutation_p.A6T	NM_001716	NP_001707	P32302	CXCR5_HUMAN	Burkitt lymphoma receptor 1 isoform 1	51	Extracellular (Potential).				B cell activation|cellular component movement	integral to plasma membrane	C-X-C chemokine receptor activity			breast(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		CTCCTTCAAGGCCGTGTTCGT	0.607													20	121					0	0	0.010504	0	0
USP2	9099	broad.mit.edu	37	11	119243981	119243981	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:119243981G>A	uc001pwm.3	-	2	505	c.210C>T	c.(208-210)TCC>TCT	p.S70S	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	70	Necessary for interaction with MDM4.				cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AGTCCAGGAGGGAGGAGGGGC	0.637													21	115					0	0	0.014323	0	0
TECTA	7007	broad.mit.edu	37	11	121028895	121028895	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:121028895G>A	uc010rzo.1	+	13	4651	c.4651G>A	c.(4651-4653)GAA>AAA	p.E1551K		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1551	VWFD 4.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTACATTAACGAAGAGCAGAT	0.537													14	58					0	0	0.003163	0	0
OR10S1	219873	broad.mit.edu	37	11	123847965	123847965	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:123847965T>G	uc001pzm.1	-	1	434	c.434A>C	c.(433-435)CAC>CCC	p.H145P		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	145	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CACTGGGTAGTGCAGGGGTTG	0.547													8	41					0	0	0.003080	0	0
VWA5A	4013	broad.mit.edu	37	11	124005635	124005635	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:124005635C>T	uc001pzu.2	+	12	1462	c.1253C>T	c.(1252-1254)TCA>TTA	p.S418L	VWA5A_uc001pzt.2_Missense_Mutation_p.S418L	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	418	VWFA.									upper_aerodigestive_tract(1)|ovary(1)	2						AGGTGTTTCTCATTTGGTATT	0.408													5	28					0	0	0.000602	0	0
VWA5A	4013	broad.mit.edu	37	11	124013234	124013234	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:124013234C>T	uc001pzu.2	+	17	2318	c.2109C>T	c.(2107-2109)ATC>ATT	p.I703I	VWA5A_uc001pzt.2_Silent_p.I703I	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	703										upper_aerodigestive_tract(1)|ovary(1)	2						TAGCCAAGATCCTAGGTATGA	0.423													19	67					0	0	0.008871	0	0
SLC37A2	219855	broad.mit.edu	37	11	124947412	124947412	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:124947412G>A	uc001qbn.2	+	4	553	c.302G>A	c.(301-303)GGC>GAC	p.G101D	SLC37A2_uc010sau.1_Missense_Mutation_p.G101D	NM_001145290	NP_001138762	Q8TED4	SPX2_HUMAN	solute carrier family 37 (glycerol-3-phosphate	101	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane				ovary(2)	2	all_hematologic(175;0.215)	Breast(109;0.012)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.152)|all_lung(97;0.159)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0384)		TATGCCATCGGCATGTTCATC	0.527													11	39					0	0	0.008291	0	0
NFRKB	4798	broad.mit.edu	37	11	129748408	129748408	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr11:129748408G>A	uc001qfi.2	-	14	1616	c.1415C>T	c.(1414-1416)GCT>GTT	p.A472V	NFRKB_uc001qfg.2_Missense_Mutation_p.A497V|NFRKB_uc001qfh.2_Missense_Mutation_p.A495V|NFRKB_uc010sbw.1_Missense_Mutation_p.A484V	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	472					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		GAAGAGGGCAGCTAATTCCTT	0.383													33	153					0	0	0.009718	0	0
AKAP3	10566	broad.mit.edu	37	12	4737612	4737612	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:4737612G>C	uc001qnb.3	-	4	685	c.456C>G	c.(454-456)AAC>AAG	p.N152K		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	152					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						AGACACATTTGTTTTCAGAGC	0.453													31	120					0	0	0.005524	0	0
GALNT8	26290	broad.mit.edu	37	12	4829912	4829912	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:4829912C>T	uc001qne.1	+	1	161	c.69C>T	c.(67-69)CTC>CTT	p.L23L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	23	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						CTGTCAATCTCCTTCTGGTAT	0.507													19	72					0	0	0.010504	0	0
GALNT8	26290	broad.mit.edu	37	12	4829980	4829980	+	Missense_Mutation	SNP	C	T	T	rs150045663	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:4829980C>T	uc001qne.1	+	1	229	c.137C>T	c.(136-138)CCT>CTT	p.P46L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	46	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						AGGGAGCTTCCTTTACATCTG	0.468													19	73					0	0	0.012319	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6425508	6425508	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:6425508G>A	uc001qnr.2	+	7	842	c.694G>A	c.(694-696)GAG>AAG	p.E232K	PLEKHG6_uc001qns.2_Missense_Mutation_p.E232K|PLEKHG6_uc010sew.1_Missense_Mutation_p.E232K|PLEKHG6_uc010sex.1_Missense_Mutation_p.E200K	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	232	DH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GCCCACCCTGGAGGAGACTCG	0.627													3	7					0	0	0.004672	0	0
C1S	716	broad.mit.edu	37	12	7177170	7177170	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:7177170C>T	uc001qsj.2	+	15	2001	c.1282C>T	c.(1282-1284)CCC>TCC	p.P428S	C1S_uc001qsk.2_Missense_Mutation_p.P428S|C1S_uc001qsl.2_Missense_Mutation_p.P428S|C1S_uc009zfr.2_Missense_Mutation_p.P261S|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	428					complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CTGTGGAGTCCCCAGAGAACC	0.458													21	67					0	0	0.003330	0	0
CLSTN3	9746	broad.mit.edu	37	12	7288115	7288115	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:7288115C>T	uc001qsr.2	+	4	854	c.576C>T	c.(574-576)TTC>TTT	p.F192F	CLSTN3_uc001qss.2_Silent_p.F204F	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	192	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						ACACCCCTTTCCTCATTGACA	0.577													16	94					0	0	0.004990	0	0
ACSM4	341392	broad.mit.edu	37	12	7475053	7475053	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:7475053G>A	uc001qsx.1	+	7	1041	c.1041G>A	c.(1039-1041)GGG>GGA	p.G347G		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	347					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						TGACCGGAGGGGAGCCACTCA	0.517													7	39					0	0	0.003080	0	0
CD163L1	283316	broad.mit.edu	37	12	7526091	7526091	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:7526091G>A	uc001qsy.2	-	14	3581	c.3555C>T	c.(3553-3555)GGC>GGT	p.G1185G	CD163L1_uc010sge.1_Silent_p.G1195G	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1185	SRCR 11.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCTCCCCACAGCCCAGCTGCC	0.542													40	122					0	0	0.006999	0	0
CD163	9332	broad.mit.edu	37	12	7640083	7640083	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:7640083C>T	uc001qsz.3	-	8	2050	c.1922G>A	c.(1921-1923)GGA>GAA	p.G641E	CD163_uc001qta.3_Missense_Mutation_p.G641E|CD163_uc009zfw.2_Missense_Mutation_p.G674E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	641	SRCR 6.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTGACCATTTCCTTTTCCAAA	0.478													27	94					0	0	0.006320	0	0
A2ML1	144568	broad.mit.edu	37	12	8998064	8998064	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:8998064G>A	uc001quz.3	+	13	1601	c.1503G>A	c.(1501-1503)ATG>ATA	p.M501I	A2ML1_uc001qva.1_Missense_Mutation_p.M81I|A2ML1_uc010sgm.1_Missense_Mutation_p.M1I	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	345						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GTTTGGTGATGGAGGGGCAGA	0.378													8	35					0	0	0.006214	0	0
STYK1	55359	broad.mit.edu	37	12	10777432	10777432	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:10777432G>A	uc001qys.2	-	8	1265	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	248	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						CATCCCCATGGAACAAATGCT	0.478										HNSCC(73;0.22)			19	103					0	0	0.012319	0	0
ETV6	2120	broad.mit.edu	37	12	12022745	12022746	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:12022745_12022746CC>TT	uc001qzz.2	+	5	1125_1126	c.851_852CC>TT	c.(850-852)TCC>TTT	p.S284F	ETV6_uc001raa.1_Missense_Mutation_p.S77F	NM_001987	NP_001978	P41212	ETV6_HUMAN	ets variant 6	284						cytoplasm|nucleolus	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		ETV6/NTRK3(234)|ETV6/JAK2(11)	soft_tissue(85)|kidney(66)|breast(55)|salivary_gland(26)|haematopoietic_and_lymphoid_tissue(13)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)|pancreas(1)	250		all_cancers(2;1.88e-12)|Acute lymphoblastic leukemia(2;6.91e-39)|all_hematologic(2;2.7e-36)				CCCCGGCACTCCGTGGATTTCA	0.609			T	NTRK3|RUNX1|PDGFRB|ABL1|MN1|ABL2|FACL6|CHIC2|ARNT|JAK2|EVI1|CDX2|STL|HLXB9|MDS2|PER1|SYK|TTL|FGFR3|PAX5	congenital fibrosarcoma|multiple leukemia and lymphoma| secretory breast|MDS|ALL								11	53					0	0	0.004672	0	0
LRP6	4040	broad.mit.edu	37	12	12279643	12279643	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:12279643A>C	uc001rah.3	-	20	4436	c.4294T>G	c.(4294-4296)TTG>GTG	p.L1432V	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.L1387V	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1432	Cytoplasmic (Potential).				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GATCCTGACAAAGAACTTGGG	0.458													36	217					0	0	0.005524	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715915	13715915	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:13715915C>T	uc001rbt.2	-	13	4436	c.4257G>A	c.(4255-4257)CCG>CCA	p.P1419P		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1419	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCGGAAGTCCGGCCTGGCTT	0.612													9	38					0	0	0.004482	0	0
RERG	85004	broad.mit.edu	37	12	15262170	15262170	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:15262170C>T	uc001rcs.2	-	4	614	c.474G>A	c.(472-474)GAG>GAA	p.E158E	RERG_uc001rct.2_Silent_p.E158E|RERG_uc010shu.1_Silent_p.E139E	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	158					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						CATAGAATATCTCTGTGATGT	0.537													24	71					0	0	0.003330	0	0
PDE3A	5139	broad.mit.edu	37	12	20833104	20833104	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:20833104C>T	uc001reh.1	+	16	3347	c.3325C>T	c.(3325-3327)CAG>TAG	p.Q1109*		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1109					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CCAGACCCCTCAGTCGCACTC	0.488													13	50					0	0	0.013537	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20905384	20905384	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:20905384A>T	uc001rej.3	+	16	2416	c.2061A>T	c.(2059-2061)AGA>AGT	p.R687S	SLCO1C1_uc010sii.1_Missense_Mutation_p.I722F|SLCO1C1_uc010sij.1_Missense_Mutation_p.R638S|SLCO1C1_uc009zip.2_Missense_Mutation_p.I556F|SLCO1C1_uc001rei.2_Missense_Mutation_p.R687S|SLCO1C1_uc010sik.1_Missense_Mutation_p.I604F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	687	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TGTCTACAAGATTCCAAAAGG	0.348													4	16					0	0	0.000602	0	0
ABCC9	10060	broad.mit.edu	37	12	21968825	21968825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:21968825G>A	uc001rfi.1	-	32	3915	c.3895C>T	c.(3895-3897)CCT>TCT	p.P1299S	ABCC9_uc001rfh.2_Missense_Mutation_p.P1299S|ABCC9_uc001rfj.1_Missense_Mutation_p.P1263S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1299	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACTTGAGAAGGATCTGGAGGA	0.328													11	34					0	0	0.013537	0	0
PKP2	5318	broad.mit.edu	37	12	33031163	33031163	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:33031163G>A	uc001rlj.3	-	3	766	c.651C>T	c.(649-651)TAC>TAT	p.Y217Y	PKP2_uc001rlk.3_Silent_p.Y217Y|PKP2_uc010skj.1_Silent_p.Y217Y	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	217					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					ACTGTCTGTGGTATGTGTCAA	0.632													11	58					0	0	0.010729	0	0
TMEM117	84216	broad.mit.edu	37	12	44781975	44781975	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:44781975C>T	uc001rod.2	+	8	1131	c.1065C>T	c.(1063-1065)ACC>ACT	p.T355T	TMEM117_uc001roe.2_Silent_p.T251T|TMEM117_uc009zkc.2_3'UTR	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	355						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		TGAACAGAACCAAGCTATCCT	0.398													13	51					0	0	0.013537	0	0
SLC38A4	55089	broad.mit.edu	37	12	47181792	47181792	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:47181792C>T	uc001rpi.2	-	5	632	c.233G>A	c.(232-234)GGA>GAA	p.G78E	SLC38A4_uc001rpj.2_Missense_Mutation_p.G78E|SLC38A4_uc009zkl.2_Missense_Mutation_p.G78E	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	78	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TGAAGACATTCCAAAGGAAGT	0.428													8	41					0	0	0.006214	0	0
AQP2	359	broad.mit.edu	37	12	50349325	50349325	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:50349325G>A	uc001rvn.2	+	4	840	c.750G>A	c.(748-750)GAG>GAA	p.E250E	AQP2_uc009zll.1_5'Flank	NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	250	Cytoplasmic (Potential).				cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						AGGAGCGCGAGGTGCGACGGC	0.697													7	26					0	0	0.001984	0	0
KRT6B	3854	broad.mit.edu	37	12	52845481	52845481	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:52845481G>A	uc001sak.2	-	1	430	c.382C>T	c.(382-384)CCT>TCT	p.P128S		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	128	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		GGGCACACAGGGAAGCCAGGG	0.647													6	110					0	0	0.001168	0	0
KRT3	3850	broad.mit.edu	37	12	53189556	53189556	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:53189556C>T	uc001say.2	-	1	337	c.271G>A	c.(271-273)GGT>AGT	p.G91S		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	91	Gly-rich.|Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						ccatagccacctgcaaagGCA	0.313													14	80					0	0	0.001855	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54913059	54913059	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:54913059G>A	uc001sgc.3	+	16	1647	c.1568G>A	c.(1567-1569)CGA>CAA	p.R523Q	NCKAP1L_uc010sox.1_Missense_Mutation_p.R65Q|NCKAP1L_uc010soy.1_Missense_Mutation_p.R473Q	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	523					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TTCCACTCCCGAATGCTGGAC	0.468													13	59					0	0	0.013537	0	0
OR6C75	390323	broad.mit.edu	37	12	55759353	55759353	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:55759353C>T	uc010spk.1	+	1	459	c.459C>T	c.(457-459)ATC>ATT	p.I153I		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	153	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						GGTTTCTGATCATCTTTCCAC	0.453													8	42					0	0	0.003080	0	0
ITGA7	3679	broad.mit.edu	37	12	56094741	56094742	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:56094741_56094742GG>AA	uc001shh.2	-	4	831_832	c.611_612CC>TT	c.(610-612)GCC>GTT	p.A204V	ITGA7_uc001shg.2_Missense_Mutation_p.A204V|ITGA7_uc010sps.1_Missense_Mutation_p.A107V|ITGA7_uc009znx.2_Missense_Mutation_p.A91V	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	204	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CAGGGGAGAAGGCGGCAGCTGT	0.584													9	36					0	0	0.004672	0	0
PAN2	9924	broad.mit.edu	37	12	56721365	56721365	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:56721365G>A	uc001skx.2	-	6	1075	c.702C>T	c.(700-702)GCC>GCT	p.A234A	PAN2_uc001skz.2_Silent_p.A234A|PAN2_uc001sky.2_Silent_p.A234A	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	234					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						TTCCTGAGAAGGCATCAAACT	0.468													18	65					0	0	0.006122	0	0
LRP1	4035	broad.mit.edu	37	12	57570871	57570871	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:57570871G>A	uc001snd.2	+	25	4505	c.4039G>A	c.(4039-4041)GAG>AAG	p.E1347K		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1347	LDL-receptor class B 8.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GGCCACACCCGAGGGCCTGGC	0.582													25	103					0	0	0.003954	0	0
SHMT2	6472	broad.mit.edu	37	12	57628077	57628078	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:57628077_57628078CC>TT	uc001snf.1	+	12	1458_1459	c.1448_1449CC>TT	c.(1447-1449)GCC>GTT	p.A483V	SHMT2_uc001sng.1_Missense_Mutation_p.A379V|SHMT2_uc001snh.1_Missense_Mutation_p.A322V|SHMT2_uc009zpk.1_Missense_Mutation_p.A473V|SHMT2_uc001sni.1_Missense_Mutation_p.A462V|SHMT2_uc010srg.1_Missense_Mutation_p.A492V|SHMT2_uc001snj.1_Missense_Mutation_p.A387V|SHMT2_uc010srh.1_Missense_Mutation_p.A462V|SHMT2_uc001snk.1_Missense_Mutation_p.A387V|SHMT2_uc010sri.1_Missense_Mutation_p.A462V|SHMT2_uc001snl.2_Missense_Mutation_p.A387V|SHMT2_uc010srj.1_Missense_Mutation_p.A138V	NM_005412	NP_005403	P34897	GLYM_HUMAN	serine hydroxymethyltransferase 2	483						microtubule cytoskeleton|mitochondrial nucleoid	glycine hydroxymethyltransferase activity|methyltransferase activity			ovary(1)|central_nervous_system(1)	2					Glycine(DB00145)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CAGCGTCTGGCCAACCTCAGGC	0.53													16	105					0	0	0.004672	0	0
SLC16A7	9194	broad.mit.edu	37	12	60168885	60168885	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:60168885C>T	uc001sqs.2	+	5	1108	c.809C>T	c.(808-810)CCA>CTA	p.P270L	SLC16A7_uc001sqt.2_Missense_Mutation_p.P270L|SLC16A7_uc001squ.2_Missense_Mutation_p.P270L|SLC16A7_uc009zqi.2_Missense_Mutation_p.P171L|SLC16A7_uc010ssi.1_Missense_Mutation_p.P171L	NM_004731	NP_004722	O60669	MOT2_HUMAN	solute carrier family 16, member 7	270	Extracellular (Potential).					integral to plasma membrane|membrane fraction	pyruvate secondary active transmembrane transporter activity|secondary active monocarboxylate transmembrane transporter activity|symporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(3;0.0303)	Pyruvic acid(DB00119)	TTCTTGGCTCCATATGCTAAA	0.373													12	45					0	0	0.010729	0	0
USP15	9958	broad.mit.edu	37	12	62790089	62790089	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:62790089C>T	uc001src.1	+	20	2594	c.2585C>T	c.(2584-2586)TCG>TTG	p.S862L	USP15_uc001srb.1_Missense_Mutation_p.S833L	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	862					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		TTGGATATGTCGGAATTCTTA	0.378													6	31					0	0	0.003080	0	0
CPM	1368	broad.mit.edu	37	12	69265610	69265610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:69265610C>T	uc001sup.2	-	4	446	c.385G>A	c.(385-387)GGA>AGA	p.G129R	CPM_uc001sur.2_Missense_Mutation_p.G129R|CPM_uc001suq.2_Missense_Mutation_p.G129R	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	129					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			GCTTCAAATCCATCTGGGTTC	0.438													19	110					0	0	0.012319	0	0
PTPRB	5787	broad.mit.edu	37	12	70946612	70946612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:70946612C>T	uc001swb.3	-	19	4708	c.4678G>A	c.(4678-4680)GAT>AAT	p.D1560N	PTPRB_uc010sto.1_Missense_Mutation_p.D1470N|PTPRB_uc010stp.1_Missense_Mutation_p.D1470N|PTPRB_uc001swc.3_Missense_Mutation_p.D1778N|PTPRB_uc001swa.3_Missense_Mutation_p.D1690N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1560	Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGAGTGGGATCGCATTTTCCA	0.423													15	37					0	0	0.004007	0	0
PTPRB	5787	broad.mit.edu	37	12	70960386	70960386	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:70960386C>T	uc001swb.3	-	13	3109	c.3079G>A	c.(3079-3081)GAT>AAT	p.D1027N	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Missense_Mutation_p.D937N|PTPRB_uc001swc.3_Missense_Mutation_p.D1245N|PTPRB_uc001swa.3_Missense_Mutation_p.D1157N|PTPRB_uc001swd.3_Missense_Mutation_p.D1244N|PTPRB_uc009zrr.1_Missense_Mutation_p.D1124N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1027	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCAGGATATCATATCTTTCT	0.423													19	70					0	0	0.007413	0	0
TMEM19	55266	broad.mit.edu	37	12	72092798	72092798	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:72092798C>T	uc001sws.2	+	5	1339	c.756C>T	c.(754-756)GCC>GCT	p.A252A	TMEM19_uc001swr.1_Silent_p.A238A|TMEM19_uc009zru.1_RNA	NM_018279	NP_060749	Q96HH6	TMM19_HUMAN	transmembrane protein 19	252						integral to membrane					0		Breast(359;0.0889)		GBM - Glioblastoma multiforme(134;0.044)		ACATTTCTGCCCCGCAGTGGC	0.453													11	98					0	0	0.010729	0	0
TRHDE	29953	broad.mit.edu	37	12	73012725	73012725	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:73012725G>A	uc001sxa.2	+	13	2271	c.2241G>A	c.(2239-2241)GAG>GAA	p.E747E		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	747	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ACCTGTCTGAGGAGAAGGATT	0.388													12	60					0	0	0.010729	0	0
NAV3	89795	broad.mit.edu	37	12	78598739	78598739	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:78598739G>A	uc001syp.2	+	39	7032	c.6859G>A	c.(6859-6861)GAA>AAA	p.E2287K	NAV3_uc001syo.2_Missense_Mutation_p.E2265K|NAV3_uc010sub.1_Missense_Mutation_p.E1744K|NAV3_uc009zsf.2_Missense_Mutation_p.E1096K	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	2287						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CACACCATGGGAAGATCCTTC	0.458										HNSCC(70;0.22)			4	19					0	0	0.009096	0	0
SYT1	6857	broad.mit.edu	37	12	79679661	79679661	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:79679661G>A	uc001sys.2	+	6	932	c.261G>A	c.(259-261)AAG>AAA	p.K87K	SYT1_uc001syt.2_Silent_p.K87K|SYT1_uc001syu.2_Silent_p.K87K|SYT1_uc001syv.2_Silent_p.K87K	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	87	Cytoplasmic (Potential).				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						TGTTCAAAAAGAAAAACAAGA	0.388													4	44					0	0	0.009096	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373762	86373763	+	Missense_Mutation	DNP	AA	GG	GG			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:86373762_86373763AA>GG	uc001tai.3	-	8	1991_1992	c.741_742TT>CC	c.(739-744)ACTTAC>ACCCAC	p.Y248H	MGAT4C_uc001tal.3_Missense_Mutation_p.Y248H|MGAT4C_uc001taj.3_Missense_Mutation_p.Y248H|MGAT4C_uc001tak.3_Missense_Mutation_p.Y248H|MGAT4C_uc010sum.1_Missense_Mutation_p.Y272H|MGAT4C_uc001tah.3_Missense_Mutation_p.Y248H	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	248	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						GTTACCCAGTAAGTTCCTTCTA	0.351													6	37					0	0	0.004672	0	0
NR1H4	9971	broad.mit.edu	37	12	100904774	100904774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:100904774G>A	uc001tht.1	+	2	356	c.328G>A	c.(328-330)GAA>AAA	p.E110K	NR1H4_uc001thp.1_Missense_Mutation_p.E100K|NR1H4_uc001thq.1_Missense_Mutation_p.E100K|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.E100K|NR1H4_uc010svk.1_Missense_Mutation_p.E100K|NR1H4_uc001ths.1_Missense_Mutation_p.E110K	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	110					bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CTACCAGGGAGAAACTGAGGT	0.527													9	71					0	0	0.008291	0	0
ANO4	121601	broad.mit.edu	37	12	101493391	101493391	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:101493391G>A	uc010svm.1	+	22	2614	c.2042G>A	c.(2041-2043)CGA>CAA	p.R681Q	ANO4_uc001thw.2_Missense_Mutation_p.R646Q|ANO4_uc001thx.2_Missense_Mutation_p.R681Q|ANO4_uc001thy.2_Missense_Mutation_p.R201Q	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	681	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGAAAAGTACGACAAGAACAT	0.353										HNSCC(74;0.22)			9	47					0	0	0.008291	0	0
ANO4	121601	broad.mit.edu	37	12	101493497	101493497	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:101493497G>A	uc010svm.1	+	22	2720	c.2148G>A	c.(2146-2148)ATG>ATA	p.M716I	ANO4_uc001thw.2_Missense_Mutation_p.M681I|ANO4_uc001thx.2_Missense_Mutation_p.M716I|ANO4_uc001thy.2_Missense_Mutation_p.M236I	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	716	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ACTTAGAAATGAGTATGGAAA	0.348										HNSCC(74;0.22)			6	27					0	0	0.001168	0	0
SLC5A8	160728	broad.mit.edu	37	12	101603573	101603573	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:101603573G>A	uc001thz.3	-	1	444	c.54C>T	c.(52-54)TTC>TTT	p.F18F		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	18	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						GCATGCCCGCGAACACCACGT	0.687													6	37					0	0	0.001984	0	0
BTBD11	121551	broad.mit.edu	37	12	108029142	108029142	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:108029142C>T	uc001tmk.1	+	12	3233	c.2712C>T	c.(2710-2712)ATC>ATT	p.I904I	BTBD11_uc009zut.1_Silent_p.I785I|BTBD11_uc001tmj.2_Silent_p.I904I|BTBD11_uc001tml.1_Silent_p.I441I|BTBD11_uc001tmm.1_5'UTR	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	904						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCACAGAAATCAAACGGAAAC	0.532													11	80					0	0	0.008291	0	0
ACACB	32	broad.mit.edu	37	12	109677704	109677704	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:109677704G>A	uc001tob.2	+	35	4851	c.4732G>A	c.(4732-4734)GTG>ATG	p.V1578M	ACACB_uc001toc.2_Missense_Mutation_p.V1578M|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Missense_Mutation_p.V244M	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1578					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CGAGCTGGAGGTGGCGTTCAA	0.592													7	34					0	0	0.001984	0	0
DNAH10	196385	broad.mit.edu	37	12	124337761	124337761	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:124337761G>A	uc001uft.3	+	35	5971	c.5946G>A	c.(5944-5946)GCG>GCA	p.A1982A		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1982	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AGACTCTGGCGAAAAAGATGA	0.403													5	4					0	0	0.000602	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138387	126138387	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:126138387G>A	uc001uhe.1	+	9	2376	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E302K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	790	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGTCAAATTCGAACCAAGTAG	0.423													16	49					0	0	0.006122	0	0
POLE	5426	broad.mit.edu	37	12	133212577	133212577	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:133212577T>C	uc001uks.1	-	42	5756	c.5712A>G	c.(5710-5712)ACA>ACG	p.T1904T	POLE_uc001ukq.1_Silent_p.T114T|POLE_uc001ukr.1_Silent_p.T708T|POLE_uc010tbq.1_RNA	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1904					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		AGAAAGAAATTGTCAGAGAAT	0.428								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					11	45					0	0	0.013537	0	0
GOLGA3	2802	broad.mit.edu	37	12	133385019	133385019	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr12:133385019G>A	uc001ukz.1	-	5	1195	c.636C>T	c.(634-636)TTC>TTT	p.F212F	GOLGA3_uc001ula.1_Silent_p.F212F|GOLGA3_uc001ulb.2_Silent_p.F212F	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	212	Golgi-targeting domain.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		TGGTGCGCAGGAAGGAATATT	0.507													60	274					0	0	0.014410	0	0
SACS	26278	broad.mit.edu	37	13	23913856	23913856	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:23913856G>A	uc001uon.2	-	10	4748	c.4159C>T	c.(4159-4161)CCT>TCT	p.P1387S	SACS_uc001uoo.2_Missense_Mutation_p.P1240S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1387					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AGTTTAGAAGGATTTTTGCTA	0.353													12	50					0	0	0.013537	0	0
NBEA	26960	broad.mit.edu	37	13	35758160	35758160	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:35758160C>T	uc001uvb.2	+	30	5085	c.4879C>T	c.(4879-4881)CTT>TTT	p.L1627F	NBEA_uc010abi.2_Intron	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1627						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CCATGGATTCCTTGCCAAGTT	0.413													7	41					0	0	0.004482	0	0
CCNA1	8900	broad.mit.edu	37	13	37011885	37011885	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:37011885G>A	uc001uvr.3	+	3	767	c.417G>A	c.(415-417)ATG>ATA	p.M139I	CCNA1_uc010teo.1_Missense_Mutation_p.M95I|CCNA1_uc010abq.2_Missense_Mutation_p.M95I|CCNA1_uc010abp.2_Missense_Mutation_p.M95I|CCNA1_uc001uvs.3_Missense_Mutation_p.M138I|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	139					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		ACATCTACATGGATGAACTAG	0.527													14	55					0	0	0.001855	0	0
AKAP11	11215	broad.mit.edu	37	13	42873637	42873637	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:42873637C>T	uc001uys.1	+	8	930	c.755C>T	c.(754-756)TCA>TTA	p.S252L		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	252	Ser-rich.				intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		TCAACTTCCTCAGTGAATGTC	0.423													17	49					0	0	0.006122	0	0
ENOX1	55068	broad.mit.edu	37	13	43935540	43935540	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:43935540C>T	uc001uza.3	-	6	557	c.257G>A	c.(256-258)GGA>GAA	p.G86E	ENOX1_uc001uzb.3_Missense_Mutation_p.G86E|ENOX1_uc001uzc.3_Missense_Mutation_p.G86E|ENOX1_uc010tfm.1_5'Flank	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	86					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		GGGGGTGATTCCAGTCATCAT	0.433													9	70					0	0	0.010729	0	0
SIAH3	283514	broad.mit.edu	37	13	46358027	46358027	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:46358027G>A	uc001vap.2	-	2	383	c.301C>T	c.(301-303)CCG>TCG	p.P101S		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	101	SIAH-type; degenerate.				multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						GGCGTCACCGGGTTGGCGTGC	0.428													31	44					0	0	0.009535	0	0
ZC3H13	23091	broad.mit.edu	37	13	46554046	46554046	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:46554046C>T	uc010tfw.1	-	10	1820	c.1814G>A	c.(1813-1815)AGA>AAA	p.R605K	ZC3H13_uc001vas.1_Missense_Mutation_p.R605K|ZC3H13_uc001vat.1_Missense_Mutation_p.R605K	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	605	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		ATATCTATCTCTTTCAGGATA	0.438													15	89					0	0	0.007413	0	0
SLAIN1	122060	broad.mit.edu	37	13	78320899	78320899	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:78320899C>T	uc010thy.1	+	4	718	c.675C>T	c.(673-675)TCC>TCT	p.S225S	SLAIN1_uc001vkk.1_Silent_p.S148S|SLAIN1_uc001vkl.1_Silent_p.S104S|SLAIN1_uc010thz.1_Silent_p.S103S|SLAIN1_uc010aex.1_Intron|SLAIN1_uc010aey.1_Intron|SLAIN1_uc001vkm.2_Silent_p.S104S	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	367										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		GCCCCAGTTCCCAGTATTTTC	0.473													36	78					0	0	0.005524	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368261	86368261	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:86368261C>T	uc001vll.1	-	2	2842	c.2383G>A	c.(2383-2385)GAA>AAA	p.E795K	SLITRK6_uc010afe.1_Missense_Mutation_p.E248K	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	795	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TTCAGCTCTTCGTGGGCTCCA	0.393													33	68					0	0	0.013726	0	0
GPC5	2262	broad.mit.edu	37	13	92408644	92408644	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:92408644C>T	uc010tif.1	+	5	1616	c.1250C>T	c.(1249-1251)CCC>CTC	p.P417L		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	417						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GATGGACTTCCCTGCTGGAAT	0.393													13	70					0	0	0.003163	0	0
COL4A1	1282	broad.mit.edu	37	13	110825088	110825088	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:110825088G>A	uc001vqw.3	-	41	3657	c.3535C>T	c.(3535-3537)CCA>TCA	p.P1179S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1179	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TTGGCCCCTGGAAACCCTGGG	0.468													33	104					0	0	0.006230	0	0
COL4A1	1282	broad.mit.edu	37	13	110830467	110830467	+	Missense_Mutation	SNP	G	A	A	rs145861489		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:110830467G>A	uc001vqw.3	-	32	2692	c.2570C>T	c.(2569-2571)TCG>TTG	p.S857L	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	857	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AGGGAGCCCCGACTGTCCCGT	0.552													52	111					0	0	0.014410	0	0
ATP11A	23250	broad.mit.edu	37	13	113439572	113439572	+	Splice_Site	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:113439572G>A	uc001vsi.3	+	2	250	c.162_splice	c.e2+1	p.K54_splice	ATP11A_uc001vsj.3_Splice_Site_p.K54_splice|ATP11A_uc001vsm.1_Splice_Site	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a						ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				CTCGTCCAAGGTAACTTGGCT	0.577													33	65					0	0	0.004289	0	0
ATP11A	23250	broad.mit.edu	37	13	113516853	113516853	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr13:113516853C>T	uc001vsi.3	+	25	3043	c.2955C>T	c.(2953-2955)TTC>TTT	p.F985F	ATP11A_uc001vsj.3_Silent_p.F985F|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	985	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GTGCTTATTTCGTGTTTGAAA	0.522													16	32					0	0	0.003163	0	0
OR4K2	390431	broad.mit.edu	37	14	20344762	20344762	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:20344762C>T	uc001vwh.1	+	1	336	c.336C>T	c.(334-336)ATC>ATT	p.I112I		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GAACTGAGATCATCTTACTCA	0.438													28	69					0	0	0.006320	0	0
OR4K17	390436	broad.mit.edu	37	14	20586023	20586023	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:20586023G>A	uc001vwo.1	+	1	458	c.458G>A	c.(457-459)AGA>AAA	p.R153K		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GCTTTTGACAGATATGTGGCC	0.448													11	71					0	0	0.010729	0	0
MYH7	4625	broad.mit.edu	37	14	23890220	23890220	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:23890220C>T	uc001wjx.2	-	26	3389	c.3283G>A	c.(3283-3285)GAG>AAG	p.E1095K	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1095	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGTTCATCCTCAATCCTTGCG	0.587													15	77					0	0	0.007413	0	0
AP1G2	8906	broad.mit.edu	37	14	24030569	24030569	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:24030569C>T	uc001wkl.2	-	19	2266	c.1929G>A	c.(1927-1929)CTG>CTA	p.L643L	AP1G2_uc001wkj.2_Silent_p.L262L|AP1G2_uc001wkk.3_Silent_p.L571L|AP1G2_uc001wkn.2_Silent_p.L262L|uc001wko.1_RNA|AP1G2_uc001wkp.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	643					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		GGGAGGGGTCCAGATGGGGAG	0.597													15	62					0	0	0.004990	0	0
LRRC16B	90668	broad.mit.edu	37	14	24534423	24534423	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:24534423G>A	uc001wlj.2	+	33	3494	c.3337G>A	c.(3337-3339)GAG>AAG	p.E1113K	LRRC16B_uc001wlk.2_Missense_Mutation_p.E209K	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1113										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CCCAGAGGAGGAGAGCAGCCT	0.667													4	20					0	0	0.000602	0	0
COCH	1690	broad.mit.edu	37	14	31354664	31354664	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:31354664C>T	uc001wqr.2	+	10	878	c.798C>T	c.(796-798)ATC>ATT	p.I266I	COCH_uc001wqp.2_Silent_p.I266I|COCH_uc001wqq.3_Silent_p.I266I|uc001wqs.2_RNA|COCH_uc001wqt.1_Silent_p.I117I	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	266	VWFA 1.				sensory perception of sound	proteinaceous extracellular matrix				pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		GAAAAGGGATCCCCAAAGTGG	0.408													13	55					0	0	0.001855	0	0
AKAP6	9472	broad.mit.edu	37	14	33293746	33293746	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:33293746G>A	uc001wrq.2	+	13	6897	c.6727G>A	c.(6727-6729)GAG>AAG	p.E2243K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2243					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGAAAACTTAGAGTTTACTCC	0.443													12	30					0	0	0.002450	0	0
SOS2	6655	broad.mit.edu	37	14	50649216	50649216	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:50649216G>A	uc001wxs.3	-	6	921	c.823C>T	c.(823-825)CCC>TCC	p.P275S	SOS2_uc010tql.1_Missense_Mutation_p.P275S|SOS2_uc001wxt.2_5'Flank	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	275	DH.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					CCAGCTAAGGGATGAGGACTG	0.323													8	28					0	0	0.008291	0	0
C14orf50	145376	broad.mit.edu	37	14	65019549	65019549	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:65019549C>T	uc001xhl.1	+	3	248	c.152C>T	c.(151-153)TCT>TTT	p.S51F		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	51										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		GCAGAAGATTCTGTCCAGTGG	0.388													19	33					0	0	0.010504	0	0
SFRS5	6430	broad.mit.edu	37	14	70238028	70238028	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:70238028C>T	uc001xll.2	+	9	2120	c.669C>T	c.(667-669)AGC>AGT	p.S223S	SFRS5_uc001xlm.2_RNA|SFRS5_uc001xlo.2_Silent_p.S223S|SFRS5_uc001xlp.2_Silent_p.S223S|SFRS5_uc001xlq.2_Silent_p.S220S	NM_006925	NP_008856	Q13243	SRSF5_HUMAN	splicing factor, arginine/serine-rich 5	223	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding				0				all cancers(60;0.00144)|BRCA - Breast invasive adenocarcinoma(234;0.0132)|OV - Ovarian serous cystadenocarcinoma(108;0.0154)		GGAGCCGGAGCCGGAGCAAGT	0.562													47	87					0	0	0.013114	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72139246	72139246	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:72139246C>T	uc001xms.2	+	9	3359	c.3011C>T	c.(3010-3012)ACT>ATT	p.T1004I	SIPA1L1_uc001xmt.2_Missense_Mutation_p.T1004I|SIPA1L1_uc001xmu.2_Missense_Mutation_p.T1004I|SIPA1L1_uc001xmv.2_Missense_Mutation_p.T1004I|SIPA1L1_uc010ttm.1_Missense_Mutation_p.T479I	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1004	PDZ.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GCGGTAGCCACTCTGAGCCAT	0.607													16	36					0	0	0.003163	0	0
YLPM1	56252	broad.mit.edu	37	14	75266069	75266069	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:75266069C>T	uc001xqj.3	+	5	4193	c.4069C>T	c.(4069-4071)CGA>TGA	p.R1357*	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1162	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		AGAAAGAAATCGAGAGCATGG	0.473													33	126					0	0	0.012213	0	0
FLRT2	23768	broad.mit.edu	37	14	86089039	86089039	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:86089039G>A	uc001xvr.2	+	2	1948	c.1181G>A	c.(1180-1182)AGC>AAC	p.S394N	FLRT2_uc010atd.2_Missense_Mutation_p.S394N	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	394	Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CCTAGCAGAAGCTACACGCCT	0.577													18	54					0	0	0.004990	0	0
TC2N	123036	broad.mit.edu	37	14	92264212	92264212	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:92264212C>T	uc001xzu.3	-	8	963	c.772G>A	c.(772-774)GAC>AAC	p.D258N	TC2N_uc001xzt.3_Missense_Mutation_p.D258N|TC2N_uc010auc.2_Missense_Mutation_p.D258N|TC2N_uc001xzv.3_Missense_Mutation_p.D258N	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	258						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		GTAGGAGTGTCTCCATAACTA	0.343													13	57					0	0	0.001855	0	0
CHGA	1113	broad.mit.edu	37	14	93398956	93398956	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:93398956G>T	uc001ybc.3	+	7	1310	c.1050G>T	c.(1048-1050)AAG>AAT	p.K350N	CHGA_uc010aum.2_RNA|CHGA_uc001ybd.3_Missense_Mutation_p.K199N	NM_001275	NP_001266	P10645	CMGA_HUMAN	chromogranin A precursor	350					regulation of blood pressure	extracellular region|stored secretory granule				skin(2)	2		all_cancers(154;0.0843)		Epithelial(152;0.102)|COAD - Colon adenocarcinoma(157;0.208)|all cancers(159;0.224)		AGCTGGCCAAGGAGCTGACGG	0.652													3	10					1.23904e-05	1.27692e-05	0.000602	1	0
KIAA1409	57578	broad.mit.edu	37	14	94046605	94046605	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:94046605C>T	uc001ybv.1	+	16	2096	c.2013C>T	c.(2011-2013)ACC>ACT	p.T671T	KIAA1409_uc001ybs.1_Silent_p.T671T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	848						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GATCCCACACCTGCCAGAAGG	0.453													29	50					0	0	0.012213	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408105	105408105	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:105408105G>A	uc010axc.1	-	7	13803	c.13683C>T	c.(13681-13683)CTC>CTT	p.L4561L	AHNAK2_uc001ypx.2_Silent_p.L4461L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4561						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGGGGCCCTTGAGGTCCACTT	0.617													44	215					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106586347	106586347	+	RNA	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:106586347G>A	uc010tyt.1	-	1286		c.27883C>T			uc001ysv.2_RNA					Parts of antibodies, mostly variable regions.												0						TACTGAAGGTGAATCCAGAGG	0.567													19	91					0	0	0.007413	0	0
ADAM6	8755	broad.mit.edu	37	14	106780818	106780818	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:106780818C>T	uc010tyt.1	-	413		c.15046_splice	c.e413-1							Parts of antibodies, mostly variable regions.												0						GACAGGACCACTGTGAACAGA	0.607													18	34					0	0	0.008871	0	0
ADAM6	8755	broad.mit.edu	37	14	107179260	107179260	+	RNA	SNP	C	T	T	rs140988424	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:107179260C>T	uc010tyt.1	-	31		c.2064G>A								Parts of antibodies, mostly variable regions.												0						AAAGTATGTCCATGGTGGAGA	0.532													4	31					0	0	0.000602	0	0
GABRB3	2562	broad.mit.edu	37	15	26793211	26793211	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:26793211C>T	uc001zaz.2	-	9	1293	c.1151G>A	c.(1150-1152)GGC>GAC	p.G384D	GABRB3_uc010uae.1_Missense_Mutation_p.G299D|GABRB3_uc001zba.2_Missense_Mutation_p.G384D|GABRB3_uc001zbb.2_Missense_Mutation_p.G440D	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	384	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ATCGCCAATGCCGCCTGAGAC	0.473													17	90					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	15	28899526	28899526	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:28899526C>T	uc010uan.1	+	2		c.274C>T			uc010azc.2_RNA|uc010uao.1_5'Flank					Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.																		CCCTCAGCTCCCTGCAGTGGA	0.622													4	18					0	0	0.009096	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43873490	43873490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:43873490G>A	uc001zrw.2	-	9	1057	c.874C>T	c.(874-876)CGA>TGA	p.R292*	PPIP5K1_uc001zrx.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zru.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zry.3_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrv.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrz.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc010udr.1_Nonsense_Mutation_p.R292*	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	292					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						ACTGGATATCGAATCTCTTTC	0.512													32	306					0	0	0.003755	0	0
DUOXA1	90527	broad.mit.edu	37	15	45409845	45409845	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:45409845C>T	uc001zup.2	-	11	1720	c.1320G>A	c.(1318-1320)TCG>TCA	p.S440S	DUOXA2_uc001zuo.2_Intron|DUOXA2_uc010beb.2_Intron|DUOXA1_uc010uem.1_Silent_p.S395S|DUOXA1_uc010bec.2_Silent_p.S440S	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	Error:Variant_position_missing_in_Q1HG43_after_alignment					protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		ggccagagttcgagaccagcc	0.358													5	26					0	0	0.000602	0	0
GALK2	2585	broad.mit.edu	37	15	49509510	49509510	+	Missense_Mutation	SNP	C	T	T	rs149095986		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:49509510C>T	uc001zxj.1	+	3	364	c.266C>T	c.(265-267)CCG>CTG	p.P89L	GALK2_uc001zxi.1_Missense_Mutation_p.P78L|GALK2_uc010ufb.1_Missense_Mutation_p.P65L|GALK2_uc001zxk.2_RNA|GALK2_uc010ufc.1_Missense_Mutation_p.P65L	NM_002044	NP_002035	Q01415	GALK2_HUMAN	galactokinase 2 isoform 1	89					galactose metabolic process	cytoplasm	ATP binding|galactokinase activity|N-acetylgalactosamine kinase activity			breast(1)	1		all_lung(180;0.000325)		all cancers(107;3.71e-08)|GBM - Glioblastoma multiforme(94;7e-05)		CCCTTGTATCCGTGAGTATTT	0.373													8	79					0	0	0.003080	0	0
HDC	3067	broad.mit.edu	37	15	50535170	50535170	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:50535170C>T	uc001zxz.2	-	12	1382	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	HDC_uc001zxy.2_Missense_Mutation_p.E169K|HDC_uc010uff.1_Missense_Mutation_p.E393K	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	426					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	TTAGCTATTTCCTTTAACACA	0.473													13	50					0	0	0.002450	0	0
TRPM7	54822	broad.mit.edu	37	15	50901824	50901824	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:50901824A>T	uc001zyt.3	-	19	2798	c.2534T>A	c.(2533-2535)TTT>TAT	p.F845Y	TRPM7_uc010bew.1_Missense_Mutation_p.F845Y|TRPM7_uc001zyu.2_Missense_Mutation_p.F403Y	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	845	Extracellular (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		AAAGGCATAAAACTTTCGCGT	0.323													7	38					0	0	0.004482	0	0
TNFAIP8L3	388121	broad.mit.edu	37	15	51397368	51397368	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:51397368C>T	uc001zyy.2	-	1	106	c.6G>A	c.(4-6)GGG>GGA	p.G2G		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	2											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GCCGTGGTTTCCCCATTTGGA	0.517													15	57					0	0	0.006122	0	0
DMXL2	23312	broad.mit.edu	37	15	51830595	51830595	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:51830595C>T	uc002abf.2	-	10	1385	c.1160G>A	c.(1159-1161)GGC>GAC	p.G387D	DMXL2_uc010ufy.1_Missense_Mutation_p.G387D|DMXL2_uc010bfa.2_Missense_Mutation_p.G387D	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	387						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AACTACAAAGCCCCCATTTCC	0.294													3	22					0	0	0.009096	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58258011	58258011	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:58258011G>A	uc002aex.2	-	8	871	c.813C>T	c.(811-813)ATC>ATT	p.I271I	ALDH1A2_uc002aey.2_Silent_p.I233I|ALDH1A2_uc010ugv.1_Silent_p.I250I|ALDH1A2_uc010ugw.1_Silent_p.I242I|ALDH1A2_uc002aew.2_Silent_p.I175I	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	271					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CTGCTTCTTGGATAAGCTTTC	0.443													7	41					0	0	0.001984	0	0
RBPMS2	348093	broad.mit.edu	37	15	65040755	65040755	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:65040755C>A	uc002anq.2	-	6	682	c.430G>T	c.(430-432)GGG>TGG	p.G144W		NM_194272	NP_919248	Q6ZRY4	RBPS2_HUMAN	RNA binding protein with multiple splicing 2	144							nucleic acid binding|nucleotide binding				0						AGAGCAGCCCCCATCAGGTCA	0.587													21	63					0.000295444	0.000303877	0.014323	1	0
PLEKHO2	80301	broad.mit.edu	37	15	65140806	65140806	+	Silent	SNP	C	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:65140806C>A	uc002anv.2	+	2	161	c.27C>A	c.(25-27)GCC>GCA	p.A9A	PLEKHO2_uc010bgz.2_5'UTR|PLEKHO2_uc002anw.2_Intron	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	9										ovary(1)|lung(1)	2						TGAAGGAAGCCGGTGAGAAGC	0.557													27	93					3.73988e-18	3.90038e-18	0.006320	1	0
IGDCC4	57722	broad.mit.edu	37	15	65676746	65676747	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:65676746_65676747CC>TT	uc002aou.1	-	20	3563_3564	c.3353_3354GG>AA	c.(3352-3354)AGG>AAA	p.R1118K	IGDCC4_uc002aot.1_Missense_Mutation_p.R706K	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1118	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GTGACTTCTTCCTCCCATTGCC	0.515													24	133					0	0	0.004672	0	0
SLC24A1	9187	broad.mit.edu	37	15	65917969	65917969	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:65917969C>T	uc010ujf.1	+	2	1838	c.1551C>T	c.(1549-1551)TTC>TTT	p.F517F	SLC24A1_uc010ujd.1_Silent_p.F517F|SLC24A1_uc010uje.1_Silent_p.F517F|SLC24A1_uc010ujg.1_Silent_p.F517F|SLC24A1_uc010ujh.1_Silent_p.F517F	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	517	Alpha-1.|Helical; (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						TCGGTGTCTTCATTTCCCACA	0.542													17	77					0	0	0.006122	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72954598	72954598	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:72954598C>T	uc010uks.1	+	11	894	c.853C>T	c.(853-855)CCC>TCC	p.P285S		NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	285	Potential.										0						CTCAGCTAAGCCCCCATCCCT	0.522													21	49					0	0	0.003330	0	0
CCDC33	80125	broad.mit.edu	37	15	74560741	74560741	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:74560741T>A	uc002axo.2	+	5	882	c.488T>A	c.(487-489)GTC>GAC	p.V163D	CCDC33_uc002axp.2_5'UTR	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	366							protein binding			ovary(3)|skin(2)	5						TACGCAACAGTCGTTCGGAAG	0.607													4	69					0	0	0.009096	0	0
SIN3A	25942	broad.mit.edu	37	15	75684670	75684670	+	Missense_Mutation	SNP	G	C	C	rs150346677		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:75684670G>C	uc002bai.2	-	15	3023	c.2764C>G	c.(2764-2766)CGA>GGA	p.R922G	SIN3A_uc002baj.2_Missense_Mutation_p.R922G|SIN3A_uc010uml.1_Missense_Mutation_p.R922G	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	922					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TCTCTCTCTCGGTTTTCTTCT	0.493													21	123					0	0	0.003330	0	0
BNC1	646	broad.mit.edu	37	15	83935648	83935648	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:83935648G>A	uc002bjt.1	-	3	463	c.375C>T	c.(373-375)CTC>CTT	p.L125L	BNC1_uc010uos.1_Silent_p.L113L	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	125					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GGAGGATCTGGAGAACCTCAT	0.493													19	97					0	0	0.008871	0	0
FANCI	55215	broad.mit.edu	37	15	89807213	89807213	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:89807213G>A	uc010bnp.1	+	8	715	c.625G>A	c.(625-627)GAA>AAA	p.E209K	FANCI_uc002bnm.1_Missense_Mutation_p.E209K|FANCI_uc002bnn.1_RNA|FANCI_uc002bno.2_Missense_Mutation_p.E209K|FANCI_uc002bnp.1_Missense_Mutation_p.E30K	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	209					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GAATCTTCAAGAAATACCACC	0.418								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				16	56					0	0	0.004990	0	0
MCTP2	55784	broad.mit.edu	37	15	94928753	94928753	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:94928753C>T	uc002btj.2	+	13	1852	c.1787C>T	c.(1786-1788)TCC>TTC	p.S596F	MCTP2_uc002bti.2_Missense_Mutation_p.S596F|MCTP2_uc010boj.2_Missense_Mutation_p.S325F|MCTP2_uc010bok.2_Missense_Mutation_p.S596F|MCTP2_uc002btk.3_Missense_Mutation_p.S184F|MCTP2_uc002btl.2_Missense_Mutation_p.S184F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	596					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CCCTTGCTGTCCGTAAGTTTC	0.363													20	88					0	0	0.008871	0	0
MCTP2	55784	broad.mit.edu	37	15	95013586	95013586	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:95013586C>T	uc002btj.2	+	20	2450	c.2385C>T	c.(2383-2385)TTC>TTT	p.F795F	MCTP2_uc010boj.2_Silent_p.F524F|MCTP2_uc010bok.2_Silent_p.F740F|MCTP2_uc002btl.2_Silent_p.F383F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	795					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CGGTCCCCTTCCTTTCATCTC	0.408													16	89					0	0	0.004990	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652													6	11					0	0	0.001984	0	0
RGS11	8786	broad.mit.edu	37	16	321083	321083	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:321083C>T	uc002cgj.1	-	13	882	c.879G>A	c.(877-879)ACG>ACA	p.T293T	RGS11_uc002cgi.1_Silent_p.T272T|RGS11_uc010bqs.1_Silent_p.T282T|RGS11_uc002cgk.1_Silent_p.T109T	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	293					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				CACGGAGCTTCGTGGGGGCAG	0.682													4	33					0	0	0.009096	0	0
CLCN7	1186	broad.mit.edu	37	16	1500570	1500570	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:1500570G>A	uc002clv.2	-	17	1655	c.1545C>T	c.(1543-1545)ATC>ATT	p.I515I	CLCN7_uc010brq.1_5'Flank|CLCN7_uc002clu.2_5'Flank|CLCN7_uc002clw.2_Silent_p.I491I	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	515	Selectivity filter part_3 (By similarity).|Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				GCAGGGACGGGATGAAGACCC	0.677													5	23					0	0	0.000602	0	0
TELO2	9894	broad.mit.edu	37	16	1551694	1551694	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:1551694C>T	uc002cly.2	+	11	1683	c.1392C>T	c.(1390-1392)CCC>CCT	p.P464P		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	464						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				CGGCAGAGCCCCCTGCAGAGA	0.627													11	70					0	0	0.002450	0	0
OR1F1	4992	broad.mit.edu	37	16	3254744	3254744	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:3254744C>T	uc010uwu.1	+	1	498	c.498C>T	c.(496-498)CTC>CTT	p.L166L		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCTCCACTCTCATTCTGTG	0.517													19	80					0	0	0.006122	0	0
OR1F1	4992	broad.mit.edu	37	16	3255137	3255137	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:3255137G>A	uc010uwu.1	+	1	891	c.891G>A	c.(889-891)TTG>TTA	p.L297L		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAGGTACTTGAAAGGGGCTC	0.423													18	58					0	0	0.007413	0	0
BTBD12	84464	broad.mit.edu	37	16	3639602	3639602	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:3639602G>A	uc002cvp.2	-	12	4664	c.4037C>T	c.(4036-4038)CCC>CTC	p.P1346L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1346	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CCCGGGGTGGGGACGGGAAGG	0.672								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				23	131					0	0	0.003330	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857498	9857498	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:9857498C>T	uc002czo.3	-	13	4451	c.3903G>A	c.(3901-3903)GAG>GAA	p.E1301E	GRIN2A_uc010uym.1_Silent_p.E1301E|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1301	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TAAGGTCTAGCTCCCTAGGTT	0.502													12	99					0	0	0.001855	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10527420	10527420	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:10527420G>A	uc002czu.2	+	4	1101	c.874G>A	c.(874-876)GAA>AAA	p.E292K	ATF7IP2_uc002czv.2_Missense_Mutation_p.E292K|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.E292K|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	292					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						AGAAAACGAGGAAAATGTTAA	0.313													7	38					0	0	0.001984	0	0
KIAA0430	9665	broad.mit.edu	37	16	15729671	15729671	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:15729671G>A	uc002ddr.2	-	3	866	c.673C>T	c.(673-675)CCC>TCC	p.P225S	KIAA0430_uc002ddq.2_Missense_Mutation_p.P224S|KIAA0430_uc010uzv.1_Missense_Mutation_p.P224S|KIAA0430_uc010uzw.1_Missense_Mutation_p.P224S|KIAA0430_uc010uzx.1_Missense_Mutation_p.P224S	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	224						peroxisome	nucleotide binding|RNA binding				0						TCAGAACAGGGGAAATAGCCA	0.522													9	67					0	0	0.006214	0	0
MYH11	4629	broad.mit.edu	37	16	15841531	15841531	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:15841531G>A	uc002ddy.2	-	19	2414	c.2307C>T	c.(2305-2307)TTC>TTT	p.F769F	MYH11_uc002ddv.2_Silent_p.F776F|MYH11_uc002ddw.2_Silent_p.F769F|MYH11_uc002ddx.2_Silent_p.F776F|MYH11_uc010bvg.2_Silent_p.F601F	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	769	Actin-binding (By similarity).|Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						CAGTTCGGAAGAAGATTTTGC	0.522			T	CBFB	AML								8	52					0	0	0.003080	0	0
SYT17	51760	broad.mit.edu	37	16	19236127	19236127	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:19236127G>A	uc002dfw.2	+	7	1526	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	SYT17_uc002dfx.2_Missense_Mutation_p.E338K|SYT17_uc002dfy.2_Missense_Mutation_p.E395K|SYT17_uc002dfv.1_Missense_Mutation_p.E338K	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	399	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						AGTTCCCCAAGAAGAACTGGA	0.458													17	84					0	0	0.007413	0	0
GP2	2813	broad.mit.edu	37	16	20335417	20335417	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:20335417C>T	uc002dgv.2	-	3	339	c.256G>A	c.(256-258)GAT>AAT	p.D86N	GP2_uc002dgw.2_Missense_Mutation_p.D86N|GP2_uc002dgx.2_Intron|GP2_uc002dgy.2_Intron	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	86						anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						ATGTTTTTATCGCACCCCTGG	0.562													16	63					0	0	0.007413	0	0
CACNG3	10368	broad.mit.edu	37	16	24366154	24366154	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:24366154G>A	uc002dmf.2	+	3	1496	c.296G>A	c.(295-297)CGA>CAA	p.R99Q		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	99					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTCTCCGCAGGAGCTGTGAGG	0.637													6	59					0	0	0.001984	0	0
CACNG3	10368	broad.mit.edu	37	16	24373037	24373037	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:24373037C>T	uc002dmf.2	+	4	2001	c.801C>T	c.(799-801)CTC>CTT	p.L267L		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	267					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TGTTCACCCTCTCCCGGGACC	0.567													19	95					0	0	0.012319	0	0
SETD1A	9739	broad.mit.edu	37	16	30991855	30991855	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:30991855C>T	uc002ead.1	+	15	5144	c.4458C>T	c.(4456-4458)CCC>CCT	p.P1486P		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1486	Interaction with ASH2L, RBBP5 and WDR5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						AGGATGGGCCCCGGGAGCACC	0.642													19	108					0	0	0.012319	0	0
HSD3B7	80270	broad.mit.edu	37	16	30999285	30999285	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:30999285C>T	uc002eaf.2	+	7	997	c.891C>T	c.(889-891)TTC>TTT	p.F297F	HSD3B7_uc010cac.2_3'UTR|HSD3B7_uc002eag.2_3'UTR|HSD3B7_uc002eah.2_Silent_p.F297F	NM_025193	NP_079469	Q9H2F3	3BHS7_HUMAN	hydroxy-delta-5-steroid dehydrogenase, 3 beta-	297	Helical; (Potential).				bile acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity				0						TGCTGGTGTTCCTGGCTGCCC	0.657													28	121					0	0	0.005443	0	0
ABCC11	85320	broad.mit.edu	37	16	48248827	48248827	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:48248827G>A	uc002eff.1	-	8	1563	c.1213C>T	c.(1213-1215)CAC>TAC	p.H405Y	ABCC11_uc002efg.1_Missense_Mutation_p.H405Y|ABCC11_uc002efh.1_Missense_Mutation_p.H405Y|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	405	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AAGGATGTGTGGATGAGAACC	0.483									Cerumen_Type				8	36					0	0	0.004482	0	0
CPNE2	221184	broad.mit.edu	37	16	57159813	57159813	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:57159813C>T	uc002eks.1	+	11	1198	c.969C>T	c.(967-969)GAC>GAT	p.D323D	CPNE2_uc010cct.1_Silent_p.D349D|CPNE2_uc010ccu.1_Silent_p.D323D|CPNE2_uc002ekt.1_Silent_p.D81D	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	323	VWFA.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				ATCCCCTCGACCCTTCCTCTT	0.542													20	43					0	0	0.007413	0	0
CDH5	1003	broad.mit.edu	37	16	66436825	66436825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:66436825G>A	uc002eom.3	+	12	2264	c.2108G>A	c.(2107-2109)GGG>GAG	p.G703E		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	703	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		GGAGGGCCCGGGGAGATGGCA	0.607													17	29					0	0	0.010504	0	0
HYDIN	54768	broad.mit.edu	37	16	70908731	70908731	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:70908731G>A	uc002ezr.2	-	63	10774	c.10646C>T	c.(10645-10647)CCA>CTA	p.P3549L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3550										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTTACATGTGGTTTATTTTC	0.522													7	16					0	0	0.003080	0	0
HYDIN	54768	broad.mit.edu	37	16	71212830	71212830	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:71212830C>T	uc002ezr.2	-	4	509	c.381_splice	c.e4+1	p.K127_splice	HYDIN_uc010cfz.1_Splice_Site|HYDIN_uc002ezv.2_Splice_Site_p.K127_splice|HYDIN_uc010vmc.1_Splice_Site_p.K144_splice|HYDIN_uc010vmd.1_Splice_Site_p.K154_splice|HYDIN_uc002ezw.3_Splice_Site_p.K144_splice	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a											ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AACATACTCACTTTGTCATTG	0.378													26	92					0	0	0.010818	0	0
PMFBP1	83449	broad.mit.edu	37	16	72158669	72158669	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:72158669C>T	uc002fcc.3	-	17	2773	c.2601G>A	c.(2599-2601)AAG>AAA	p.K867K	PMFBP1_uc002fcd.2_Silent_p.K862K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Silent_p.K717K|PMFBP1_uc010cgo.1_Silent_p.K158K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	867	Potential.									ovary(2)	2		Ovarian(137;0.179)				TGCCCACCTCCTTATCGTCCT	0.577											OREG0023927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	52					0	0	0.002780	0	0
CDYL2	124359	broad.mit.edu	37	16	80654830	80654830	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:80654830G>A	uc002ffs.2	-	4	942	c.837C>T	c.(835-837)ATC>ATT	p.I279I		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	279						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CTTCTTTCATGATCTGCCGGC	0.582													3	11					0	0	0.009096	0	0
COX4NB	10328	broad.mit.edu	37	16	85832894	85832894	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr16:85832894C>T	uc002fjd.2	-	1	255	c.8G>A	c.(7-9)GGG>GAG	p.G3E	COX4NB_uc010vol.1_Missense_Mutation_p.G3E|COX4I1_uc002fje.2_5'Flank|COX4I1_uc002fjf.2_5'Flank|COX4I1_uc002fjg.1_5'Flank|COX4I1_uc010vom.1_5'Flank	NM_006067	NP_006058	O43402	CX4NB_HUMAN	COX4 neighbor isoform 1	3						mitochondrion|nucleus					0						CAGTTTCACCCCGGGCATGCT	0.726													3	9					0	0	0.004672	0	0
SMTNL2	342527	broad.mit.edu	37	17	4498512	4498512	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:4498512G>A	uc002fyf.1	+	5	946	c.879G>A	c.(877-879)CAG>CAA	p.Q293Q	SMTNL2_uc002fye.2_Silent_p.Q149Q	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	293											0				READ - Rectum adenocarcinoma(115;0.0325)		TCCATCGGCAGGGGGAGCGTC	0.667													21	39					0	0	0.003330	0	0
POLR2A	5430	broad.mit.edu	37	17	7400791	7400791	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:7400791C>T	uc002ghf.3	+	6	1170	c.936C>T	c.(934-936)TTC>TTT	p.F312F	POLR2A_uc002ghe.2_Silent_p.F312F	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	312					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				TCCTCCAGTTCCATGTGGCCA	0.592													11	55					0	0	0.002450	0	0
DHRS7C	201140	broad.mit.edu	37	17	9684798	9684798	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:9684798C>T	uc010vvb.1	-	2	267	c.267_splice	c.e2+1	p.K89_splice	DHRS7C_uc010cof.2_Splice_Site_p.K89_splice	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C							extracellular region	binding|oxidoreductase activity				0						GAAGACCTTACCTTGCTGGGG	0.542													8	31					0	0	0.006214	0	0
MYH8	4626	broad.mit.edu	37	17	10300222	10300222	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:10300222C>T	uc002gmm.2	-	31	4355	c.4260G>A	c.(4258-4260)ACG>ACA	p.T1420T	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1420	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GCCGCTGCTTCGTCTTCTCAA	0.488									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				13	56					0	0	0.003163	0	0
MYH1	4619	broad.mit.edu	37	17	10416982	10416982	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:10416982C>T	uc002gmo.2	-	9	860	c.766G>A	c.(766-768)GGT>AGT	p.G256S	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	256	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCTGTGGTACCGAAGTGGATC	0.393													4	28					0	0	0.000602	0	0
MYH2	4620	broad.mit.edu	37	17	10447086	10447086	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:10447086G>A	uc010coi.2	-	8	811	c.683C>T	c.(682-684)CCC>CTC	p.P228L	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.P228L|MYH2_uc010coj.2_Missense_Mutation_p.P228L	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	228	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCCAGTAGGGGGTTGGCACT	0.522													9	47					0	0	0.008291	0	0
DNAH9	1770	broad.mit.edu	37	17	11511499	11511499	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:11511499G>A	uc002gne.2	+	2	539	c.471G>A	c.(469-471)ATG>ATA	p.M157I	DNAH9_uc002gnd.1_Missense_Mutation_p.M157I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	157	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGCCCCACATGATATGTGAGG	0.512													29	137					0	0	0.008361	0	0
DNAH9	1770	broad.mit.edu	37	17	11642268	11642268	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:11642268G>A	uc002gne.2	+	29	5954	c.5886G>A	c.(5884-5886)CTG>CTA	p.L1962L	DNAH9_uc010coo.2_Silent_p.L1256L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1962	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGATCAGCCTGAATCCTTCTG	0.478													7	62					0	0	0.003080	0	0
DNAH9	1770	broad.mit.edu	37	17	11687739	11687739	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:11687739C>T	uc002gne.2	+	41	8012	c.7944C>T	c.(7942-7944)ATC>ATT	p.I2648I	DNAH9_uc010coo.2_Silent_p.I1942I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2648	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGAAATCCATCCCCCCACTGA	0.532													30	143					0	0	0.013726	0	0
MYOCD	93649	broad.mit.edu	37	17	12656366	12656366	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:12656366G>A	uc002gnn.2	+	10	2060	c.1761G>A	c.(1759-1761)GTG>GTA	p.V587V	MYOCD_uc002gno.2_Silent_p.V587V|MYOCD_uc002gnp.1_Silent_p.V491V|MYOCD_uc002gnq.2_Silent_p.V306V	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	587					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AAGTACCTGTGAAAAGACAAA	0.517													11	66					0	0	0.010729	0	0
TRIM16	10626	broad.mit.edu	37	17	15516116	15516116	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:15516116C>T	uc002gor.1	-	11	2288	c.1951G>A	c.(1951-1953)GAT>AAT	p.D651N	CDRT1_uc002gov.3_Missense_Mutation_p.D341N			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	378	B30.2/SPRY.				histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		TAATTAGGATCAATTCCTCTT	0.378													12	83					0	0	0.010729	0	0
RAI1	10743	broad.mit.edu	37	17	17698164	17698165	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:17698164_17698165GG>AA	uc002grm.2	+	3	2371_2372	c.1902_1903GG>AA	c.(1900-1905)AAGGAC>AAAAAC	p.D635N	RAI1_uc002grn.1_Missense_Mutation_p.D635N	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	635						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GCCTGGTCAAGGACAGCAGCAA	0.673													9	36					0	0	0.004672	0	0
SREBF1	6720	broad.mit.edu	37	17	17720736	17720736	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:17720736C>T	uc002gru.1	-	8	1634	c.1440G>A	c.(1438-1440)CGG>CGA	p.R480R	SREBF1_uc002grp.1_Silent_p.R99R|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_Silent_p.R226R|SREBF1_uc002grs.1_Silent_p.R456R|SREBF1_uc002grt.1_Silent_p.R510R	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	480	Cytoplasmic (Potential).|Interaction with LMNA (By similarity).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						CCAGCATGCCCCGGCTGTGCA	0.637													5	16					0	0	0.001168	0	0
FAM83G	644815	broad.mit.edu	37	17	18882883	18882883	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:18882883C>T	uc002guw.2	-	4	961	c.794G>A	c.(793-795)CGG>CAG	p.R265Q	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	265										ovary(1)|central_nervous_system(1)	2						GCACACAGCCCGGTCTCCATC	0.582													11	42					0	0	0.010729	0	0
LGALS9	3965	broad.mit.edu	37	17	25969334	25969334	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:25969334C>T	uc002gzp.2	+	4	522	c.404C>T	c.(403-405)TCC>TTC	p.S135F	LGALS9_uc002gzq.2_Missense_Mutation_p.S135F|LGALS9_uc002gzr.2_Missense_Mutation_p.S78F|LGALS9_uc010waa.1_Missense_Mutation_p.S78F|LGALS9_uc002gzs.2_Missense_Mutation_p.S135F	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	135	Galectin 1.			S -> F (in Ref. 1; CAA88922).	positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		GACACCATCTCCGTCAATGGC	0.612													7	38					0	0	0.002450	0	0
KIAA0100	9703	broad.mit.edu	37	17	26955507	26955507	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:26955507G>A	uc002hbu.2	-	24	4469	c.4370C>T	c.(4369-4371)TCC>TTC	p.S1457F		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1457						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					AGTTGTCCAGGAAATCCGTAA	0.458													19	68					0	0	0.008871	0	0
TAOK1	57551	broad.mit.edu	37	17	27835062	27835062	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:27835062T>C	uc002hdz.1	+	14	1681	c.1487T>C	c.(1486-1488)TTA>TCA	p.L496S	TAOK1_uc010wbe.1_Missense_Mutation_p.L496S|TAOK1_uc010wbf.1_Missense_Mutation_p.L496S|TAOK1_uc002heb.1_Missense_Mutation_p.L322S	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	496	Potential.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CGCCTCAGATTAGACAAAGAT	0.423													6	17					0	0	0.001984	0	0
NF1	4763	broad.mit.edu	37	17	29653263	29653263	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:29653263C>T	uc002hgg.2	+	37	5594	c.5261C>T	c.(5260-5262)TCT>TTT	p.S1754F	NF1_uc002hgh.2_Missense_Mutation_p.S1733F|NF1_uc002hgi.1_Missense_Mutation_p.S766F|NF1_uc010cso.2_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1754					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ACCAAAGTTTCTATTAAAGTA	0.423			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			7	31					0	0	0.004482	0	0
NLE1	54475	broad.mit.edu	37	17	33464057	33464057	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:33464057G>A	uc002hiy.1	-	7	819	c.791C>T	c.(790-792)TCC>TTC	p.S264F	NLE1_uc010ctn.1_5'UTR|NLE1_uc002hiz.1_5'UTR	NM_018096	NP_060566	Q9NVX2	NLE1_HUMAN	Notchless gene homolog isoform a	264	WD 4.					nucleolus				breast(3)|ovary(1)	4		Ovarian(249;0.17)				GCGGTCCTGGGAGGCAGAGTA	0.597													15	101					0	0	0.012319	0	0
GAS2L2	246176	broad.mit.edu	37	17	34079577	34079577	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:34079577G>A	uc002hjv.1	-	1	321	c.293C>T	c.(292-294)TCC>TTC	p.S98F		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	98	CH.				cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCCATTGCAGGAGACCCCGAC	0.612													24	97					0	0	0.003330	0	0
CCL14	6358	broad.mit.edu	37	17	34311406	34311406	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:34311406C>T	uc010wcr.1	-	2	241	c.162G>A	c.(160-162)GAG>GAA	p.E54E	CCL16_uc002hkl.2_5'Flank|CCL16_uc002hkm.2_5'Flank|CCL14_uc010wcq.1_Silent_p.E70E|CCL14_uc002hkn.2_RNA|CCL14-CCL15_uc010wcs.1_RNA|CCL14-CCL15_uc010wct.1_RNA|uc002hkq.2_5'Flank	NM_032963	NP_116739	Q16627	CCL14_HUMAN	chemokine (C-C motif) ligand 14 isoform 1	54					cellular calcium ion homeostasis|immune response|positive regulation of cell proliferation	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGCTGTTGGTCTCATAGTAAT	0.577													20	102					0	0	0.014323	0	0
SYNRG	11276	broad.mit.edu	37	17	35902537	35902537	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:35902537G>A	uc002hoa.2	-	15	2822	c.2739C>T	c.(2737-2739)CTC>CTT	p.L913L	SYNRG_uc010wde.1_Silent_p.L835L|SYNRG_uc010wdf.1_Silent_p.L835L|SYNRG_uc002hoc.2_Silent_p.L834L|SYNRG_uc002hoe.2_Silent_p.L835L|SYNRG_uc002hod.2_Intron|SYNRG_uc010wdg.1_Intron|SYNRG_uc002hob.2_Silent_p.L913L|SYNRG_uc002hof.2_Intron	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	913					endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TTCCTGCTGAGAGGACAAATG	0.458													10	95					0	0	0.006214	0	0
PSMD3	5709	broad.mit.edu	37	17	38151308	38151308	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:38151308C>T	uc002htn.1	+	7	1247	c.1083C>T	c.(1081-1083)TTC>TTT	p.F361F	PSMD3_uc010wen.1_RNA|PSMD3_uc010weo.1_Silent_p.F262F	NM_002809	NP_002800	O43242	PSMD3_HUMAN	proteasome 26S non-ATPase subunit 3	361	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	enzyme regulator activity|protein binding			ovary(1)|pancreas(1)	2	Colorectal(19;0.000442)					TGCCCTATTTCCTTCTGACTC	0.587													32	134					0	0	0.009535	0	0
CASC3	22794	broad.mit.edu	37	17	38296902	38296902	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:38296902G>A	uc010cwt.1	+	1	396	c.101G>A	c.(100-102)GGG>GAG	p.G34E	CASC3_uc010cws.1_Missense_Mutation_p.G34E|CASC3_uc002hue.2_Missense_Mutation_p.G34E	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	34					mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						cggggaggcgggagctgcagc	0.458													3	47					0	0	0.004672	0	0
KRT34	3885	broad.mit.edu	37	17	39535632	39535632	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:39535632C>T	uc002hwm.2	-	5	987	c.975G>A	c.(973-975)GAG>GAA	p.E325E		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	325	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				GCAGCTCGATCTCCAGGGCGT	0.607													9	67					0	0	0.006214	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42275002	42275002	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:42275002A>G	uc002iga.2	-	2	239	c.148T>C	c.(148-150)TTG>CTG	p.L50L	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Silent_p.L50L	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	50					histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GTGTCGTCCAAGAAGAAGTAG	0.547													20	118					0	0	0.012319	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335031	42335031	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:42335031A>C	uc002igf.3	-	12	1576	c.1427T>G	c.(1426-1428)TTC>TGC	p.F476C	SLC4A1_uc002igg.3_Missense_Mutation_p.F476C	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	476	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		AACTACCGAGAAGAAGGCTTC	0.612													4	20					0	0	0.009096	0	0
EFTUD2	9343	broad.mit.edu	37	17	42941122	42941122	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:42941122G>A	uc002ihn.2	-	15	1575	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I	EFTUD2_uc010wje.1_Silent_p.I403I|EFTUD2_uc010wjf.1_Silent_p.I428I	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	438						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TTGGAGAAGGGATATGCTGCA	0.547													20	91					0	0	0.003330	0	0
ITGB3	3690	broad.mit.edu	37	17	45377887	45377887	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:45377887G>A	uc002ilj.2	+	12	1977	c.1957G>A	c.(1957-1959)GAC>AAC	p.D653N	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	653	Extracellular (Potential).			GALHD -> EPYMT (in Ref. 1; AAA52589, 2; AAA60122 and 4; AAB71380).	activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	AGCCCTACATGACGAAAATAC	0.473													6	31					0	0	0.008291	0	0
C17orf57	124989	broad.mit.edu	37	17	45456594	45456594	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:45456594G>A	uc002iln.2	+	14	1968	c.1557G>A	c.(1555-1557)AAG>AAA	p.K519K	C17orf57_uc002ilm.2_Silent_p.K423K|C17orf57_uc010daz.1_Silent_p.K471K	NM_152347	NP_689560	Q8IY85	CQ057_HUMAN	hypothetical protein LOC124989	519	EF-hand 1.						calcium ion binding			breast(1)|central_nervous_system(1)|skin(1)	3						CTCTCGCCAAGGAGCGAAGTT	0.259													6	44					0	0	0.003080	0	0
CA10	56934	broad.mit.edu	37	17	50149681	50149681	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:50149681G>A	uc002itw.3	-	2	1120	c.134C>T	c.(133-135)CCA>CTA	p.P45L	CA10_uc002itv.3_Missense_Mutation_p.P51L|CA10_uc002itx.3_Missense_Mutation_p.P45L|CA10_uc002ity.3_Missense_Mutation_p.P45L|CA10_uc002itz.2_Missense_Mutation_p.P45L	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	45					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			GTACTTACCTGGAACAAAGCT	0.363													11	61					0	0	0.013537	0	0
SCPEP1	59342	broad.mit.edu	37	17	55078337	55078337	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:55078337C>T	uc002iuv.3	+	11	1169	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Silent_p.L322L	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	372					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					AGCTGGATCTCATCGTAGATA	0.498													17	95					0	0	0.010504	0	0
AKAP1	8165	broad.mit.edu	37	17	55193564	55193564	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:55193564C>T	uc002iux.2	+	7	2605	c.2374C>T	c.(2374-2376)CGA>TGA	p.R792*	AKAP1_uc010wnl.1_Nonsense_Mutation_p.R792*|AKAP1_uc010dcm.2_Nonsense_Mutation_p.R792*	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	792	Tudor.				blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					AGTGGAGATTCGATACGTGGA	0.607													4	69					0	0	0.001168	0	0
HSF5	124535	broad.mit.edu	37	17	56540236	56540236	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:56540236T>G	uc002iwi.1	-	4	1573	c.1449A>C	c.(1447-1449)CAA>CAC	p.Q483H		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	483						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGACATGAGCTTGCTGGATGG	0.473													35	125					0	0	0.004878	0	0
TUBD1	51174	broad.mit.edu	37	17	57955542	57955542	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:57955542G>A	uc002ixw.1	-	5	969	c.691C>T	c.(691-693)CTC>TTC	p.L231F	TUBD1_uc010ddf.1_Missense_Mutation_p.L231F|TUBD1_uc010ddg.1_Missense_Mutation_p.L196F|TUBD1_uc010ddh.1_Missense_Mutation_p.L112F|TUBD1_uc010wok.1_Missense_Mutation_p.L231F|TUBD1_uc002ixx.1_Missense_Mutation_p.L231F|TUBD1_uc010wol.1_Missense_Mutation_p.L15F|TUBD1_uc010ddi.1_Intron	NM_016261	NP_057345	Q9UJT1	TBD_HUMAN	delta-tubulin	231					cell differentiation|microtubule-based movement|multicellular organismal development|protein polymerization|spermatogenesis	centriole|microtubule|nucleus	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1	all_cancers(5;3.18e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;9.34e-13)|all cancers(12;1.91e-11)			TGATGTGCGAGGACTTGATTG	0.423													9	39					0	0	0.006214	0	0
MARCH10	162333	broad.mit.edu	37	17	60814083	60814083	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:60814083C>T	uc010ddr.2	-	6	1384	c.1146G>A	c.(1144-1146)AGG>AGA	p.R382R	MARCH10_uc002jag.3_Silent_p.R382R|MARCH10_uc010dds.2_Silent_p.R420R|MARCH10_uc002jah.2_Silent_p.R381R|uc002jaj.1_RNA|uc002jak.2_RNA	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	382							ligase activity|zinc ion binding				0						TAGCAGATTCCCTATCAGGCA	0.537													24	78					0	0	0.003330	0	0
TANC2	26115	broad.mit.edu	37	17	61498822	61498822	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:61498822T>A	uc002jal.3	+	25	5502	c.5479T>A	c.(5479-5481)TCT>ACT	p.S1827T	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.S938T	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1827							binding			ovary(2)	2						GTCGCCAGTGTCTCCAACTCA	0.537													3	26					0	0	0.004672	0	0
BPTF	2186	broad.mit.edu	37	17	65850295	65850295	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:65850295G>A	uc002jgf.2	+	2	914	c.853G>A	c.(853-855)GAG>AAG	p.E285K	BPTF_uc002jge.2_Missense_Mutation_p.E285K|BPTF_uc010wqm.1_Missense_Mutation_p.E285K	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	285	DDT.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			ACTCATGGCAGAGATGCATGT	0.458													24	89					0	0	0.014323	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281578	71281578	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:71281578G>A	uc002jjn.2	-	2	1209	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	CDC42EP4_uc002jjo.2_Silent_p.I354I|CDC42EP4_uc002jjp.1_Silent_p.I284I	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	354					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			CTCACACACGGATTTCATCCT	0.642													25	80					0	0	0.006320	0	0
JMJD6	23210	broad.mit.edu	37	17	74714855	74714856	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:74714855_74714856AG>CA	uc002jso.2	-	6	1491_1492	c.1167_1168CT>TG	c.(1165-1170)ACCTCC>ACTGCC	p.S390A	JMJD6_uc002jsn.1_Missense_Mutation_p.S390A|JMJD6_uc010dgz.2_Missense_Mutation_p.P343L	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	390					mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						TCGTCCTGGGAGGTGGTGTCCC	0.629													4	63					0	0	0.004672	0	0
SLC38A10	124565	broad.mit.edu	37	17	79249826	79249826	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:79249826G>A	uc002jzz.1	-	8	1230	c.855C>T	c.(853-855)TTC>TTT	p.F285F	SLC38A10_uc002jzy.1_Silent_p.F203F|SLC38A10_uc002kab.2_Silent_p.F285F	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	285	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			TCATCATGGGGAAGCCCACAG	0.612													16	62					0	0	0.004007	0	0
TMEM105	284186	broad.mit.edu	37	17	79287683	79287683	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr17:79287683C>T	uc002kad.1	-	3	708	c.158G>A	c.(157-159)AGG>AAG	p.R53K		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	53						integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			GGGAGACGTCCTCGGGCCCTG	0.607													24	106					0	0	0.003330	0	0
L3MBTL4	91133	broad.mit.edu	37	18	5969550	5969551	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:5969550_5969551CC>TT	uc002kmz.3	-	18	1642_1643	c.1482_1483GG>AA	c.(1480-1485)GTGGAG>GTAAAG	p.E495K	L3MBTL4_uc010dkt.2_Missense_Mutation_p.E495K|L3MBTL4_uc002kmy.3_Missense_Mutation_p.E324K	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	495					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TGCGCCTGCTCCACCGAGTATT	0.624													15	29					0	0	0.004672	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6311567	6311567	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:6311567G>A	uc002kmz.3	-	3	218	c.58C>T	c.(58-60)CAG>TAG	p.Q20*	L3MBTL4_uc010dkt.2_Nonsense_Mutation_p.Q20*	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	20					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				CGTCCGTCCTGATCCAAACGC	0.483													51	236					0	0	0.014410	0	0
CEP76	79959	broad.mit.edu	37	18	12674678	12674678	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:12674678A>C	uc002kri.2	-	11	1854	c.1698T>G	c.(1696-1698)TTT>TTG	p.F566L	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_Missense_Mutation_p.F388L|CEP76_uc010wzz.1_Missense_Mutation_p.F491L	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	566					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						TTGTACGCTCAAATTCATAAG	0.408													14	39					0	0	0.001855	0	0
C18orf1	753	broad.mit.edu	37	18	13438253	13438253	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:13438253C>T	uc002ksa.2	+	4	719	c.51C>T	c.(49-51)TTC>TTT	p.F17F	C18orf1_uc002ksb.2_Silent_p.F17F	NM_181481	NP_852146	O15165	CR001_HUMAN	hypothetical protein LOC753 isoform alpha 1	17	Extracellular (Potential).|LDL-receptor class A.					integral to membrane|plasma membrane				ovary(2)|skin(1)	3				READ - Rectum adenocarcinoma(73;0.0642)		AGTGCAAATTCACCTGCACCA	0.458													12	53					0	0	0.010729	0	0
ROCK1	6093	broad.mit.edu	37	18	18588072	18588072	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:18588072G>A	uc002kte.2	-	14	2435	c.1494C>T	c.(1492-1494)TAC>TAT	p.Y498Y		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	498	Interaction with FHOD1.|Potential.|REM.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CTTTTCTTTGGTACTCATTAA	0.313													6	18					0	0	0.001168	0	0
LAMA3	3909	broad.mit.edu	37	18	21487612	21487612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:21487612C>T	uc002kuq.2	+	53	6903	c.6817C>T	c.(6817-6819)CTT>TTT	p.L2273F	LAMA3_uc002kur.2_Missense_Mutation_p.L2217F|LAMA3_uc002kus.3_Missense_Mutation_p.L664F|LAMA3_uc002kut.3_Missense_Mutation_p.L608F	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2273	Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCGAGATGGTCTTCATGGGAT	0.428													20	102					0	0	0.008871	0	0
KCTD1	284252	broad.mit.edu	37	18	24081143	24081143	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:24081143G>A	uc002kvw.2	-	2	617	c.57C>T	c.(55-57)ATC>ATT	p.I19I	KCTD1_uc010xbj.1_Silent_p.I627I|KCTD1_uc010xbk.1_Silent_p.I19I	NM_001136205	NP_001129677	Q719H9	KCTD1_HUMAN	potassium channel tetramerisation domain	19					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|voltage-gated potassium channel complex	transcription corepressor activity|transcription factor binding|voltage-gated potassium channel activity			ovary(1)	1	all_cancers(21;0.00191)|Lung NSC(5;0.000698)|all_lung(6;0.0019)|Ovarian(20;0.0848)		Epithelial(2;7.8e-06)|OV - Ovarian serous cystadenocarcinoma(3;9.02e-06)|all cancers(3;3.37e-05)			CTGGAGTAGGGATGCCTTGGT	0.512													22	106					0	0	0.014323	0	0
DSC1	1823	broad.mit.edu	37	18	28710560	28710560	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:28710560G>A	uc002kwn.2	-	16	2864	c.2602C>T	c.(2602-2604)CGG>TGG	p.R868W	DSC1_uc002kwm.2_3'UTR|uc002kwo.1_5'Flank	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	868	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TCTTCCTGCCGATCGCTGCAG	0.433													16	93					0	0	0.008871	0	0
DSG4	147409	broad.mit.edu	37	18	28966764	28966764	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:28966764G>A	uc002kwq.2	+	3	333	c.198G>A	c.(196-198)AAG>AAA	p.K66K	DSG4_uc002kwr.2_Silent_p.K66K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	66	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACAACTCGAAGAGGAACCCCA	0.453													5	49					0	0	0.000602	0	0
KIAA1328	57536	broad.mit.edu	37	18	34647216	34647216	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:34647216C>T	uc002kzz.2	+	7	962	c.940C>T	c.(940-942)CGT>TGT	p.R314C	KIAA1328_uc002lab.2_Missense_Mutation_p.R30C|KIAA1328_uc002lac.1_Missense_Mutation_p.R137C|KIAA1328_uc010dnc.1_RNA|KIAA1328_uc002lad.2_Missense_Mutation_p.R30C	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	314										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		TGCTGCAGATCGTGTTCATGA	0.458													7	53					0	0	0.001984	0	0
MRO	83876	broad.mit.edu	37	18	48333212	48333212	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:48333212C>T	uc002lew.3	-	4	402	c.108G>A	c.(106-108)TGG>TGA	p.W36*	MRO_uc010xdn.1_Nonsense_Mutation_p.W36*|MRO_uc010dpa.2_Nonsense_Mutation_p.W50*|MRO_uc010dpb.2_Nonsense_Mutation_p.W50*|MRO_uc010dpc.2_Nonsense_Mutation_p.W36*|MRO_uc002lex.3_Nonsense_Mutation_p.W36*	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	36						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		ACCTCAGTTTCCAAGAGACCT	0.468													18	108					0	0	0.008871	0	0
DCC	1630	broad.mit.edu	37	18	50278616	50278616	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:50278616G>C	uc002lfe.1	+	2	871	c.284G>C	c.(283-285)GGG>GCG	p.G95A	DCC_uc010xdr.1_5'UTR	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	95	Extracellular (Potential).|Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTTTCAAATGGGTCTCTGCTG	0.463													11	93					0	0	0.013537	0	0
ALPK2	115701	broad.mit.edu	37	18	56246599	56246599	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:56246599C>T	uc002lhj.3	-	4	1623	c.1409G>A	c.(1408-1410)AGA>AAA	p.R470K		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	470							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GTGGCTGTCTCTGGTTTCTCC	0.473											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	121					0	0	0.004656	0	0
RNF152	220441	broad.mit.edu	37	18	59483693	59483693	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:59483693C>T	uc002lih.1	-	2	416	c.4G>A	c.(4-6)GAG>AAG	p.E2K		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	2					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GACAGCGTCTCCATGGTGGAC	0.587													15	85					0	0	0.004990	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570459	61570459	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:61570459G>A	uc010xeu.1	+	9	1501	c.1168G>A	c.(1168-1170)GCA>ACA	p.A390T	SERPINB2_uc002ljo.2_Missense_Mutation_p.A390T|SERPINB2_uc010dqh.2_Missense_Mutation_p.A320T|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	390					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	ACAGTTTGTGGCAGATCATCC	0.468													21	80					0	0	0.010504	0	0
RTTN	25914	broad.mit.edu	37	18	67742728	67742728	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr18:67742728G>A	uc002lkp.2	-	33	4492	c.4424C>T	c.(4423-4425)CCT>CTT	p.P1475L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Missense_Mutation_p.P563L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1475							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				CTGAAGGGCAGGTTTTCCAAT	0.408													18	67					0	0	0.008871	0	0
REXO1	57455	broad.mit.edu	37	19	1823627	1823627	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:1823627G>A	uc002lua.3	-	4	2269	c.2174C>T	c.(2173-2175)TCC>TTC	p.S725F	REXO1_uc010dsq.2_5'Flank|REXO1_uc010xgs.1_5'Flank|uc002lub.1_RNA	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	725						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCAGGGGCGGAAATGTGGAC	0.716													6	15					0	0	0.001984	0	0
ITGB1BP3	27231	broad.mit.edu	37	19	3941164	3941164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:3941164G>A	uc002lyz.3	+	7	781	c.491G>A	c.(490-492)GGT>GAT	p.G164D	ITGB1BP3_uc010xia.1_Missense_Mutation_p.G169D	NM_170678	NP_733778	Q9NPI5	NRK2_HUMAN	integrin beta 1 binding protein 3	164					pyridine nucleotide biosynthetic process		ATP binding|metal ion binding|protein binding|ribosylnicotinamide kinase activity			skin(2)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00463)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGGCCAACGGTGTGGAAGTG	0.597													28	114					0	0	0.006320	0	0
CCDC94	55702	broad.mit.edu	37	19	4267768	4267768	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:4267768C>T	uc002lzv.3	+	7	889	c.856C>T	c.(856-858)CCA>TCA	p.P286S		NM_018074	NP_060544	Q9BW85	CCD94_HUMAN	coiled-coil domain containing 94	286											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0348)|STAD - Stomach adenocarcinoma(1328;0.183)		GGCCCCCACCCCAGGTAAGGT	0.657											OREG0025164	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	10					0	0	0.004672	0	0
TMEM146	257062	broad.mit.edu	37	19	5739414	5739414	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:5739414G>A	uc002mda.2	+	7	598	c.537G>A	c.(535-537)GGG>GGA	p.G179G	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	179	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						CAAATACTGGGGGATTCAGTT	0.289													17	71					0	0	0.010504	0	0
C3	718	broad.mit.edu	37	19	6685057	6685057	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:6685057C>T	uc002mfm.2	-	30	3973	c.3911G>A	c.(3910-3912)AGC>AAC	p.S1304N	C3_uc002mfl.2_Missense_Mutation_p.S40N	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1304		Cleavage; by factor I.			complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GATCTTGGAGCTGCGGCTGGG	0.582													6	31					0	0	0.001984	0	0
FBN3	84467	broad.mit.edu	37	19	8174261	8174261	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:8174261C>T	uc002mjf.2	-	35	4489	c.4468G>A	c.(4468-4470)GGG>AGG	p.G1490R		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1490	TB 6.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AAACAGTTCCCGGCCCGAGTG	0.557													14	50					0	0	0.003163	0	0
FBN3	84467	broad.mit.edu	37	19	8203108	8203108	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:8203108G>A	uc002mjf.2	-	9	1139	c.1118C>T	c.(1117-1119)CCC>CTC	p.P373L		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	373						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CCCAAGAGGGGGACCCATGCC	0.657													12	39					0	0	0.013537	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841889	8841889	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:8841889C>T	uc010xkg.1	+	1	499	c.499C>T	c.(499-501)CCC>TCC	p.P167S		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.P167L(1)		central_nervous_system(1)|skin(1)	2						CCTGCATTTTCCCTACTGTGC	0.552													31	128					0	0	0.004878	0	0
MUC16	94025	broad.mit.edu	37	19	9046738	9046738	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9046738C>T	uc002mkp.2	-	5	35097	c.34893G>A	c.(34891-34893)GTG>GTA	p.V11631V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11633	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGTGAGGTCACTACCCCTG	0.527													11	75					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9056720	9056720	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9056720C>T	uc002mkp.2	-	3	30930	c.30726G>A	c.(30724-30726)GGG>GGA	p.G10242G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10244	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGAGGTTATCCCAGTGGACT	0.458													12	51					0	0	0.010729	0	0
MUC16	94025	broad.mit.edu	37	19	9057290	9057290	+	Silent	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9057290T>G	uc002mkp.2	-	3	30360	c.30156A>C	c.(30154-30156)TCA>TCC	p.S10052S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10054	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGTGAGGAGTGAAGTCACAG	0.483													9	37					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9060457	9060457	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9060457T>C	uc002mkp.2	-	3	27193	c.26989A>G	c.(26989-26991)ACA>GCA	p.T8997A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8999	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGTGGATGTTGACTCCATC	0.498													28	94					0	0	0.010818	0	0
MUC16	94025	broad.mit.edu	37	19	9065721	9065721	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9065721G>A	uc002mkp.2	-	3	21929	c.21725C>T	c.(21724-21726)TCC>TTC	p.S7242F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7244	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCAGGGAGGAAATTGACTC	0.468													29	143					0	0	0.009535	0	0
MUC16	94025	broad.mit.edu	37	19	9070856	9070856	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9070856G>A	uc002mkp.2	-	3	16794	c.16590C>T	c.(16588-16590)TCC>TCT	p.S5530S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5532	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGTCTGAGATGGATGTTCTGC	0.483													18	79					0	0	0.007413	0	0
MUC16	94025	broad.mit.edu	37	19	9073747	9073747	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9073747G>A	uc002mkp.2	-	3	13903	c.13699C>T	c.(13699-13701)CCA>TCA	p.P4567S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4569	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAACCATTGGAGATGTGGCT	0.507													9	52					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9080519	9080519	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9080519G>A	uc002mkp.2	-	2	9716	c.9512C>T	c.(9511-9513)TCA>TTA	p.S3171L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3172	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCCTGGCTTGACATCTTTAT	0.473													16	118					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	9084051	9084051	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9084051T>C	uc002mkp.2	-	1	7968	c.7764A>G	c.(7762-7764)GAA>GAG	p.E2588E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2588	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCTGAAGTTTCCCAGTTTG	0.458													19	87					0	0	0.010504	0	0
MUC16	94025	broad.mit.edu	37	19	9085376	9085376	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9085376G>A	uc002mkp.2	-	1	6643	c.6439C>T	c.(6439-6441)CCA>TCA	p.P2147S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2147	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGGCCATTGGAAGAGGGACT	0.493													17	56					0	0	0.006122	0	0
OR7G2	390882	broad.mit.edu	37	19	9213689	9213689	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9213689C>T	uc010xkk.1	-	1	294	c.294G>A	c.(292-294)ACG>ACA	p.T98T		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTTTGGGATCGTGGTTGTGC	0.488													12	78					0	0	0.013537	0	0
OR7G3	390883	broad.mit.edu	37	19	9237276	9237276	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9237276C>T	uc010xkl.1	-	1	351	c.351G>A	c.(349-351)ATG>ATA	p.M117I		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATAGGCCATCATGACCAGAA	0.483													25	79					0	0	0.004656	0	0
OR7D4	125958	broad.mit.edu	37	19	9324751	9324751	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9324751C>T	uc002mla.1	-	1	763	c.763G>A	c.(763-765)GGA>AGA	p.G255R		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ACCCCAAGTCCTGTTCCATAG	0.532													6	43					0	0	0.001168	0	0
ZNF560	147741	broad.mit.edu	37	19	9577729	9577729	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9577729C>T	uc002mlp.1	-	10	2104	c.1894G>A	c.(1894-1896)GAC>AAC	p.D632N	ZNF560_uc010dwr.1_Missense_Mutation_p.D526N	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	632	C2H2-type 11; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TTCCCACAGTCCTTATATTCA	0.378													17	75					0	0	0.006122	0	0
ZNF846	162993	broad.mit.edu	37	19	9870588	9870588	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:9870588G>A	uc002mmb.1	-	5	791	c.260C>T	c.(259-261)TCC>TTC	p.S87F	ZNF846_uc010xky.1_Intron|ZNF846_uc010xkz.1_Intron|ZNF846_uc010dww.2_Intron|ZNF846_uc002mmc.1_Intron	NM_001077624	NP_001071092	Q147U1	ZN846_HUMAN	zinc finger protein 846	87					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAGCAGTGGGGAGCCTTTGGT	0.383													12	42					0	0	0.001855	0	0
C3P1	388503	broad.mit.edu	37	19	10157494	10157494	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:10157494C>T	uc010dwx.1	+	9		c.1328C>T				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GGAGGAAGTTCACTCTGCCAA	0.527													17	64					0	0	0.012319	0	0
ICAM5	7087	broad.mit.edu	37	19	10403726	10403726	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:10403726G>A	uc002mnu.3	+	6	1334	c.1269G>A	c.(1267-1269)GAG>GAA	p.E423E	ICAM5_uc002mnv.3_Silent_p.E298E	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	423	Extracellular (Potential).|Ig-like C2-type 5.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			CGTGGCCCGAGGGCCCAGAGC	0.692													16	66					0	0	0.004007	0	0
TYK2	7297	broad.mit.edu	37	19	10464889	10464889	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:10464889A>G	uc002moc.3	-	20	3115	c.2737T>C	c.(2737-2739)TTG>CTG	p.L913L	TYK2_uc010dxe.2_Silent_p.L728L	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	913	Protein kinase 2.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			TAGCAGTACAAGCTGACCTTG	0.657													24	68					0	0	0.003330	0	0
CACNA1A	773	broad.mit.edu	37	19	13386753	13386753	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:13386753G>A	uc010dze.2	-	24	4139	c.3903C>T	c.(3901-3903)CTC>CTT	p.L1301L	CACNA1A_uc010xnd.1_Silent_p.L6L|CACNA1A_uc002mwx.3_Silent_p.L6L|CACNA1A_uc010dzc.2_Silent_p.L826L|CACNA1A_uc002mwy.3_Silent_p.L1300L|CACNA1A_uc010xne.1_Silent_p.L829L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1301	III.|Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GATGCAGGACGAGCCCCAGGT	0.592													6	24					0	0	0.001984	0	0
OR10H1	26539	broad.mit.edu	37	19	15918755	15918755	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:15918755G>A	uc002nbq.2	-	1	182	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATCAGCAGGAACAGCAGGA	0.592													19	81					0	0	0.002780	0	0
NWD1	284434	broad.mit.edu	37	19	16918857	16918858	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:16918857_16918858GG>AA	uc002neu.3	+	18	4619_4620	c.4197_4198GG>AA	c.(4195-4200)AAGGAG>AAAAAG	p.E1400K	NWD1_uc002net.3_Missense_Mutation_p.E1265K|NWD1_uc002nev.3_Missense_Mutation_p.E1194K			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1400	WD 12.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TCAGCCACAAGGAGCAGCTGGT	0.584													12	100					0	0	0.004672	0	0
NWD1	284434	broad.mit.edu	37	19	16918894	16918894	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:16918894C>T	uc002neu.3	+	18	4656	c.4234C>T	c.(4234-4236)CTG>TTG	p.L1412L	NWD1_uc002net.3_Silent_p.L1277L|NWD1_uc002nev.3_Silent_p.L1206L			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1412	WD 12.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GGATGCCCTGCTGTGTCTCTG	0.597													16	97					0	0	0.004007	0	0
CRTC1	23373	broad.mit.edu	37	19	18853784	18853784	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:18853784C>T	uc002nkb.3	+	2	279	c.191C>T	c.(190-192)TCC>TTC	p.S64F	CRTC1_uc010ebv.2_Missense_Mutation_p.S64F	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	64					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						TATGGCGGGTCCCTGCCCAAC	0.667													12	34					0	0	0.002450	0	0
NDUFA13	51079	broad.mit.edu	37	19	19626945	19626945	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:19626945C>T	uc010xqy.1	+	1	406	c.147C>T	c.(145-147)TTC>TTT	p.F49F	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Silent_p.F49F|NDUFA13_uc010xqx.1_Silent_p.F49F	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TCCGGGACTTCCTAGCCGTGC	0.627													6	36					0	0	0.001984	0	0
ZNF99	7652	broad.mit.edu	37	19	22940113	22940113	+	Missense_Mutation	SNP	G	A	A	rs74174099		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:22940113G>A	uc010xrh.1	-	6	2218	c.2218C>T	c.(2218-2220)CAT>TAT	p.H740Y		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TTTCCAGTATGAATTATCTCA	0.348													9	31					0	0	0.010729	0	0
ZNF536	9745	broad.mit.edu	37	19	31039149	31039149	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:31039149G>A	uc002nsu.1	+	4	2761	c.2623G>A	c.(2623-2625)GGC>AGC	p.G875S	ZNF536_uc010edd.1_Missense_Mutation_p.G875S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	875					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GCAGGCCACGGGCATGTCTTC	0.552													19	80					0	0	0.008871	0	0
ATP4A	495	broad.mit.edu	37	19	36054383	36054383	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:36054383C>T	uc002oal.1	-	2	88	c.59G>A	c.(58-60)GGG>GAG	p.G20E		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	20	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	AGCCATGTCCCCGCCAGGGCC	0.577													45	156					0	0	0.011902	0	0
RYR1	6261	broad.mit.edu	37	19	39001196	39001196	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:39001196C>T	uc002oit.2	+	59	9121	c.8991C>T	c.(8989-8991)TTC>TTT	p.F2997F	RYR1_uc002oiu.2_Silent_p.F2997F|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2997	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGATTAAATTCTTTGCCAAGG	0.562													23	78					0	0	0.003954	0	0
ADCK4	79934	broad.mit.edu	37	19	41211268	41211268	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:41211268C>T	uc002oor.2	-	6	754	c.452G>A	c.(451-453)GGG>GAG	p.G151E	ADCK4_uc002ooq.1_Intron|ADCK4_uc002oos.2_Missense_Mutation_p.G151E	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	151						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			GAGGGCGGCCCCTCGAACTGT	0.612													11	49					0	0	0.008291	0	0
BCKDHA	593	broad.mit.edu	37	19	41916585	41916585	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:41916585A>T	uc002oqq.2	+	2	181	c.152A>T	c.(151-153)AAG>ATG	p.K51M	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Missense_Mutation_p.K85M|BCKDHA_uc002oqp.1_Translation_Start_Site|BCKDHA_uc002oqr.2_Missense_Mutation_p.K51M|BCKDHA_uc010xvz.1_Missense_Mutation_p.K29M	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	51					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CTGGATGACAAGCCCCAGTTC	0.577													13	64					0	0	0.002450	0	0
PSG7	5676	broad.mit.edu	37	19	43439767	43439767	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:43439767C>T	uc002ovl.3	-	2	321	c.219G>A	c.(217-219)AGG>AGA	p.R73R	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	73	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTAGAGGTCCCTGATTTGTC	0.428													41	165					0	0	0.006999	0	0
PSG5	5673	broad.mit.edu	37	19	43689011	43689011	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:43689011C>T	uc002ovu.2	-	2	484	c.353G>A	c.(352-354)GGA>GAA	p.G118E	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.G46E|PSG5_uc002ovx.2_Missense_Mutation_p.G118E|PSG5_uc002ovv.2_Missense_Mutation_p.G118E|PSG5_uc002ovw.2_Missense_Mutation_p.G118E	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	118	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GGTGTAGGATCCTGCGTCTTC	0.448													62	257					0	0	0.014410	0	0
HIF3A	64344	broad.mit.edu	37	19	46834519	46834519	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:46834519C>T	uc002peh.2	+	13	1848	c.1819C>T	c.(1819-1821)CCT>TCT	p.P607S	HIF3A_uc002peg.3_Missense_Mutation_p.P607S|HIF3A_uc002pei.3_Missense_Mutation_p.P551S|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Missense_Mutation_p.P551S|HIF3A_uc010xxy.1_Missense_Mutation_p.P538S|HIF3A_uc002pel.2_Missense_Mutation_p.P605S|HIF3A_uc010xxz.1_Missense_Mutation_p.P556S	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	607					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		TCTGCTCTTTCCTCTCAGCCT	0.443													14	49					0	0	0.004990	0	0
GRWD1	83743	broad.mit.edu	37	19	48954323	48954323	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:48954323C>T	uc002pjd.2	+	6	1091	c.858C>T	c.(856-858)ATC>ATT	p.I286I		NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	286	WD 2.					nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		ACGCCTCCATCCGCATCTGGG	0.672													15	61					0	0	0.006122	0	0
SLC6A16	28968	broad.mit.edu	37	19	49813343	49813343	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:49813343G>A	uc002pmz.2	-	4	888	c.654C>T	c.(652-654)CCC>CCT	p.P218P	SLC6A16_uc002pna.2_Silent_p.P218P|hsa-mir-4324|MI0015854_5'Flank	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	218	Helical; Name=3; (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		CCCATGGAACGGGAAACTGGA	0.368													14	77					0	0	0.004990	0	0
C19orf41	126123	broad.mit.edu	37	19	50657857	50657857	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:50657857G>A	uc002prp.1	-	6	710	c.623C>T	c.(622-624)TCG>TTG	p.S208L		NM_152358	NP_689571	Q6UXV1	IZUM2_HUMAN	hypothetical protein LOC126123 precursor	208	Cytoplasmic (Potential).					integral to membrane					0		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00364)|OV - Ovarian serous cystadenocarcinoma(262;0.0052)		GATGACTCACGAGACCACGAT	0.567													7	37					0	0	0.001984	0	0
KLK8	11202	broad.mit.edu	37	19	51503822	51503822	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:51503822C>T	uc002pur.1	-	3	267	c.88G>A	c.(88-90)GAG>AAG	p.E30K	KLK9_uc002puw.1_RNA|KLK8_uc002puq.1_Missense_Mutation_p.E75K|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Missense_Mutation_p.E30K|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	30					cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		ACCTTGTCCTCCTGTGCCCTG	0.632													6	58					0	0	0.001168	0	0
C19orf75	284369	broad.mit.edu	37	19	51771825	51771825	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:51771825G>A	uc002pwb.1	+	6	949	c.568G>A	c.(568-570)GAA>AAA	p.E190K	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Missense_Mutation_p.E96K	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	190						integral to membrane				ovary(1)|pancreas(1)	2						TCGCTTTCAGGAAAAGCAAGA	0.428													7	44					0	0	0.006214	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918821	51918821	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:51918821C>T	uc002pwo.2	-	6	1688	c.1072_splice	c.e6+1	p.V358_splice	SIGLEC10_uc002pwp.2_Splice_Site_p.V300_splice|SIGLEC10_uc002pwq.2_Splice_Site_p.V300_splice|SIGLEC10_uc002pwr.2_Splice_Site_p.V358_splice|SIGLEC10_uc010ycy.1_Splice_Site_p.V268_splice|SIGLEC10_uc010ycz.1_Splice_Site_p.V310_splice|SIGLEC10_uc010eow.2_Splice_Site_p.V170_splice|SIGLEC10_uc002pws.1_Splice_Site_p.V194_splice	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor						cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CCCTTTCCTACCTGTCCTGTT	0.617													30	127					0	0	0.013726	0	0
ZNF615	284370	broad.mit.edu	37	19	52497966	52497966	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:52497966G>A	uc002pye.1	-	6	655	c.363C>T	c.(361-363)TTC>TTT	p.F121F	ZNF615_uc002pyf.1_Silent_p.F132F|ZNF615_uc002pyg.1_Silent_p.F13F|ZNF615_uc002pyh.1_Silent_p.F132F|ZNF615_uc010epi.1_Silent_p.F128F|ZNF615_uc010ydg.1_Silent_p.F126F	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		GCTTCAGCAGGAAATGACCTT	0.343													12	27					0	0	0.001855	0	0
ZNF347	84671	broad.mit.edu	37	19	53644315	53644315	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:53644315C>T	uc002qbb.1	-	5	1835	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	ZNF347_uc010eql.1_Missense_Mutation_p.G590E|ZNF347_uc002qbc.1_Missense_Mutation_p.G590E	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	589	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		AGTATGAATTCCCCGATGTCT	0.408													12	74					0	0	0.001855	0	0
ZNF761	388561	broad.mit.edu	37	19	53958449	53958449	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:53958449T>A	uc010eqp.2	+	7	1146	c.688T>A	c.(688-690)TTA>ATA	p.L230I	ZNF761_uc010ydy.1_Missense_Mutation_p.L176I|ZNF761_uc002qbt.1_Missense_Mutation_p.L176I	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	230	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CAGCTCACTCTTAAGGAAACA	0.368													24	80					0	0	0.003330	0	0
ZNF761	388561	broad.mit.edu	37	19	53959500	53959500	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:53959500G>A	uc010eqp.2	+	7	2197	c.1739G>A	c.(1738-1740)TGT>TAT	p.C580Y	ZNF761_uc010ydy.1_Missense_Mutation_p.C526Y|ZNF761_uc002qbt.1_Missense_Mutation_p.C526Y	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	580	C2H2-type 14; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		CCTTACAAATGTGAAGATAGT	0.388													16	36					0	0	0.003163	0	0
ZNF813	126017	broad.mit.edu	37	19	53994847	53994847	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:53994847T>C	uc002qbu.2	+	4	1489	c.1361T>C	c.(1360-1362)CTT>CCT	p.L454P	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	454	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		AATTCAGCCCTTGTAATTCAT	0.413													3	41					0	0	0.004672	0	0
DPRX	503834	broad.mit.edu	37	19	54140182	54140182	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:54140182C>T	uc002qcf.1	+	3	567	c.516C>T	c.(514-516)TGC>TGT	p.C172C		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	172						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CCCAAGTTTGCGCTCCAAGCT	0.428													27	99					0	0	0.007291	0	0
CACNG7	59284	broad.mit.edu	37	19	54444813	54444813	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:54444813C>T	uc002qcr.1	+	4	529	c.514C>T	c.(514-516)CAT>TAT	p.H172Y	CACNG7_uc010era.1_Missense_Mutation_p.H172Y	NM_031896	NP_114102	P62955	CCG7_HUMAN	voltage-dependent calcium channel gamma-7	172					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(1)	1	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0711)		GCAGTATTTTCATTATCGCTA	0.532													34	124					0	0	0.003755	0	0
CACNG6	59285	broad.mit.edu	37	19	54501531	54501531	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:54501531G>A	uc002qct.2	+	2	960	c.370G>A	c.(370-372)GAG>AAG	p.E124K	CACNG6_uc002qcu.2_Missense_Mutation_p.E124K|CACNG6_uc002qcv.2_Intron	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	124						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		CACCACGGGGGAGAATGCACG	0.512													14	59					0	0	0.003163	0	0
TSEN34	79042	broad.mit.edu	37	19	54696217	54696217	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:54696217C>T	uc002qdu.2	+	4	847	c.738C>T	c.(736-738)GTC>GTT	p.V246V	MBOAT7_uc002qdq.2_5'Flank|MBOAT7_uc002qdr.2_5'Flank|MBOAT7_uc002qds.2_5'Flank|MBOAT7_uc010yen.1_5'Flank|MBOAT7_uc002qdt.3_5'Flank|TSEN34_uc010yeo.1_Silent_p.V246V|TSEN34_uc002qdv.2_Silent_p.V246V|TSEN34_uc002qdw.2_Silent_p.V246V	NM_024075	NP_076980	Q9BSV6	SEN34_HUMAN	tRNA-intron endonuclease 34	246					mRNA processing|tRNA-type intron splice site recognition and cleavage	nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity				0	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					ACTTCCTGGTCTATCCTGGTG	0.493													22	101					0	0	0.003954	0	0
LILRA1	11024	broad.mit.edu	37	19	55106623	55106623	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:55106623G>A	uc002qgh.1	+	5	599	c.417G>A	c.(415-417)GGG>GGA	p.G139G	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Silent_p.G139G	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	139	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CCTCAGGAGGGAACGTGACCC	0.542													22	106					0	0	0.012319	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55246796	55246796	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:55246796C>T	uc002qgu.1	+	6	1044	c.1026C>T	c.(1024-1026)CTC>CTT	p.L342L	KIR2DL3_uc002qgv.2_Intron	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	342	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		TCTTCTTTCTCCTTCATCGCT	0.522													14	45					0	0	0.001855	0	0
NLRP2	55655	broad.mit.edu	37	19	55496462	55496462	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:55496462C>T	uc002qij.2	+	7	2164	c.2078C>T	c.(2077-2079)TCC>TTC	p.S693F	NLRP2_uc010yfp.1_Missense_Mutation_p.S670F|NLRP2_uc010esn.2_Missense_Mutation_p.S669F|NLRP2_uc010eso.2_Missense_Mutation_p.S690F|NLRP2_uc010esp.2_Missense_Mutation_p.S671F	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	693					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GACCTTTGTTCCATATTTGGA	0.448													20	90					0	0	0.008871	0	0
NLRP4	147945	broad.mit.edu	37	19	56369627	56369627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:56369627C>T	uc002qmd.3	+	3	1290	c.868C>T	c.(868-870)CAG>TAG	p.Q290*	NLRP4_uc002qmf.2_Nonsense_Mutation_p.Q215*|NLRP4_uc010etf.2_Nonsense_Mutation_p.Q121*	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	290	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GCTCCGGGATCAGGTGACGAT	0.537													20	75					0	0	0.010504	0	0
NLRP8	126205	broad.mit.edu	37	19	56465910	56465910	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:56465910C>T	uc002qmh.2	+	3	557	c.486C>T	c.(484-486)TTC>TTT	p.F162F	NLRP8_uc010etg.2_Silent_p.F162F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	162						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAAAGTTTTTCCCCATATGGG	0.443													9	53					0	0	0.008291	0	0
NLRP8	126205	broad.mit.edu	37	19	56466522	56466522	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:56466522C>T	uc002qmh.2	+	3	1169	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	NLRP8_uc010etg.2_Silent_p.F366F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	366	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCAAGTATTTCCAGATGTATT	0.463													10	76					0	0	0.008291	0	0
NLRP8	126205	broad.mit.edu	37	19	56466752	56466752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:56466752C>T	uc002qmh.2	+	3	1399	c.1328C>T	c.(1327-1329)TCC>TTC	p.S443F	NLRP8_uc010etg.2_Missense_Mutation_p.S443F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	443	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		GAGAACTTTTCCAGAAAGATC	0.473													19	83					0	0	0.012319	0	0
PEG3	5178	broad.mit.edu	37	19	57333026	57333026	+	Missense_Mutation	SNP	C	T	T	rs138565582	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:57333026C>T	uc002qnu.2	-	4	1013	c.662G>A	c.(661-663)CGA>CAA	p.R221Q	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.R96Q|ZIM2_uc002qnq.2_Missense_Mutation_p.R96Q|ZIM2_uc010etp.2_Missense_Mutation_p.R96Q|ZIM2_uc010ygs.1_Missense_Mutation_p.R96Q|PEG3_uc002qnt.2_Missense_Mutation_p.R222Q|PEG3_uc002qnv.2_Missense_Mutation_p.R221Q|PEG3_uc002qnw.2_Missense_Mutation_p.R96Q|PEG3_uc002qnx.2_Missense_Mutation_p.R95Q|PEG3_uc010etr.2_Missense_Mutation_p.R221Q	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	221					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TACCTGAGATCGGGACTCATA	0.527													26	114					0	0	0.005443	0	0
ZNF530	348327	broad.mit.edu	37	19	58118641	58118641	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr19:58118641C>T	uc002qpk.2	+	3	1968	c.1748C>T	c.(1747-1749)TCC>TTC	p.S583F	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	583	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TGTGGAAAATCCTTTAGCCAA	0.358													10	22					0	0	0.008291	0	0
NT5C1B	93034	broad.mit.edu	37	2	18766041	18766041	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:18766041C>T	uc002rcz.2	-	5	746	c.642G>A	c.(640-642)GAG>GAA	p.E214E	NT5C1B_uc002rcy.2_Silent_p.E214E|NT5C1B_uc010exr.2_Silent_p.E156E|NT5C1B_uc010yju.1_Silent_p.E154E|NT5C1B_uc002rda.2_Silent_p.E154E|NT5C1B_uc010yjv.1_Silent_p.E231E|NT5C1B_uc010yjw.1_Silent_p.E197E|NT5C1B_uc010exs.2_Silent_p.E216E|NT5C1B_uc002rdb.1_Silent_p.E6E	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	214					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGGCCCAGGCCTCCGGATTCT	0.697													6	43					0	0	0.001984	0	0
OTOF	9381	broad.mit.edu	37	2	26703111	26703111	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:26703111C>T	uc002rhk.2	-	16	1999	c.1872G>A	c.(1870-1872)CGG>CGA	p.R624R	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	624	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCCGTTTCTCCGGTCGATCA	0.582													13	82					0	0	0.003163	0	0
DPYSL5	56896	broad.mit.edu	37	2	27164914	27164914	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27164914C>T	uc002rhu.3	+	10	1344	c.1186C>T	c.(1186-1188)CCC>TCC	p.P396S	DPYSL5_uc002rhv.3_Missense_Mutation_p.P396S	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	396					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGCATTATTCCCGGAGCCGA	0.532											OREG0014510	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	138					0	0	0.012213	0	0
SLC30A3	7781	broad.mit.edu	37	2	27481129	27481130	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27481129_27481130GT>AA	uc002rjk.2	-	3	509_510	c.323_324AC>TT	c.(322-324)CAC>CTT	p.H108L	SLC30A3_uc002rjj.2_5'UTR|SLC30A3_uc010ylh.1_Missense_Mutation_p.H103L	NM_003459	NP_003450	Q99726	ZNT3_HUMAN	solute carrier family 30 (zinc transporter),	108	Helical; (Potential).				regulation of sequestering of zinc ion	cell junction|integral to plasma membrane|late endosome|membrane fraction|synaptic vesicle membrane	zinc transporting ATPase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGCCAGCAAGTGGGCTGCATC	0.55													10	37					0	0	0.004672	0	0
IFT172	26160	broad.mit.edu	37	2	27676582	27676582	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27676582G>T	uc002rku.2	-	34	3787	c.3736C>A	c.(3736-3738)CTG>ATG	p.L1246M	IFT172_uc010ezb.2_RNA	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	1246					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CAGATGCGCAGAGCGTCACTC	0.582													14	47					3.99206e-14	4.15508e-14	0.007413	1	0
IFT172	26160	broad.mit.edu	37	2	27693920	27693920	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27693920G>A	uc002rku.2	-	16	1618	c.1567C>T	c.(1567-1569)CTC>TTC	p.L523F	IFT172_uc002rkw.2_Missense_Mutation_p.L523F	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	523	WD 9.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CAGAAGTTGAGGATCATTGTC	0.463													6	41					0	0	0.001168	0	0
GCKR	2646	broad.mit.edu	37	2	27726447	27726447	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27726447G>A	uc002rky.2	+	9	777	c.711G>A	c.(709-711)CAG>CAA	p.Q237Q	GCKR_uc010ezd.2_Silent_p.Q237Q|GCKR_uc010ylu.1_Silent_p.Q47Q	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	237	SIS 1.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					AGAAAATGCAGGAGAAACAGA	0.507													5	27					0	0	0.000602	0	0
C2orf16	84226	broad.mit.edu	37	2	27801985	27801985	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:27801985G>A	uc002rkz.3	+	1	2597	c.2546G>A	c.(2545-2547)CGA>CAA	p.R849Q		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	849										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGGAGATCACGATCTAGGACA	0.478													11	50					0	0	0.008291	0	0
SFRS7	6432	broad.mit.edu	37	2	38977196	38977196	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:38977196G>A	uc002rqz.2	-	2	407	c.169C>T	c.(169-171)CCT>TCT	p.P57S	SFRS7_uc002rra.2_RNA|SFRS7_uc010ynp.1_Missense_Mutation_p.P57S|GEMIN6_uc002rrb.2_5'Flank	NM_001031684	NP_001026854	Q16629	SRSF7_HUMAN	splicing factor, arginine/serine-rich 7	57	RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding|zinc ion binding				0		all_hematologic(82;0.248)				GCATCTCTAGGATCTTCGAAT	0.383													23	72					0	0	0.004656	0	0
PKDCC	91461	broad.mit.edu	37	2	42280438	42280439	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:42280438_42280439GG>AA	uc002rsg.2	+	2	878_879	c.699_700GG>AA	c.(697-702)ACGGAG>ACAAAG	p.E234K		NM_138370	NP_612379	Q504Y2	PKDCC_HUMAN	protein kinase-like protein SgK493	234	Protein kinase.				cell differentiation|embryonic digestive tract development|lung alveolus development|negative regulation of Golgi to plasma membrane protein transport|ossification|palate development|positive regulation of bone mineralization|positive regulation of chondrocyte differentiation|protein transport	Golgi apparatus	ATP binding|protein kinase activity			breast(1)	1						CCACCATCACGGAGCTGGGCGC	0.614													16	114					0	0	0.004672	0	0
ABCG8	64241	broad.mit.edu	37	2	44079912	44079912	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:44079912C>T	uc002rtq.2	+	6	959	c.869C>T	c.(868-870)ACC>ATC	p.T290I	ABCG8_uc010yoa.1_Missense_Mutation_p.T290I	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	290	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				ACGTCTGGCACCCCCATCTAC	0.582													70	393					0	0	0.014410	0	0
STON1	11037	broad.mit.edu	37	2	48822421	48822421	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:48822421G>A	uc002rwo.3	+	5	2400	c.2188G>A	c.(2188-2190)GGT>AGT	p.G730S	STON1_uc010fbm.2_Missense_Mutation_p.G730S|STON1-GTF2A1L_uc002rwp.1_Intron|STON1-GTF2A1L_uc010yol.1_Intron|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.G730S	NM_006873	NP_006864	Q9Y6Q2	STON1_HUMAN	stonin 1	730					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex				skin(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGATAAAATTGGTGACTGCAT	0.393													5	13					0	0	0.001168	0	0
FSHR	2492	broad.mit.edu	37	2	49217768	49217768	+	Missense_Mutation	SNP	G	A	A	rs121909665		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:49217768G>A	uc002rww.2	-	5	457	c.383C>T	c.(382-384)TCC>TTC	p.S128F	FSHR_uc002rwx.2_Missense_Mutation_p.S128F|FSHR_uc010fbn.2_Missense_Mutation_p.S128F|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	128	Extracellular (Potential).|LRR 4.		S -> Y (in OHSS; displays increase in affinity and sensitivity toward hCG and does not show any constitutive activity nor promiscuous activation by TSH).		female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding	p.S128P(1)		ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	ACCTGTGTTGGATATTAACCT	0.333									Gonadal_Dysgenesis_46_XX				9	49					0	0	0.010729	0	0
NRXN1	9378	broad.mit.edu	37	2	51254734	51254734	+	Silent	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:51254734C>G	uc010fbq.2	-	2	2155	c.678G>C	c.(676-678)GGG>GGC	p.G226G	NRXN1_uc002rxe.3_Silent_p.G226G|NRXN1_uc002rxd.1_Silent_p.G226G	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TGAGGCACACCCCGCCCTCGC	0.706													9	17					0	0	0.004482	0	0
ARHGAP25	9938	broad.mit.edu	37	2	68962338	68962338	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:68962338C>T	uc002seu.2	+	1	371	c.7C>T	c.(7-9)CTA>TTA	p.L3L	ARHGAP25_uc010yqk.1_Intron|ARHGAP25_uc010fdg.2_Silent_p.L3L|ARHGAP25_uc010yql.1_Silent_p.L3L	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	3					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						CAAAATGTCCCTAAAATTGCC	0.433													12	75					0	0	0.010729	0	0
DYSF	8291	broad.mit.edu	37	2	71780958	71780958	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:71780958C>G	uc002sie.2	+	21	2328	c.1952C>G	c.(1951-1953)CCC>CGC	p.P651R	DYSF_uc010feg.2_Missense_Mutation_p.P682R|DYSF_uc010feh.2_Missense_Mutation_p.P637R|DYSF_uc002sig.3_Missense_Mutation_p.P637R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P651R|DYSF_uc010fef.2_Missense_Mutation_p.P668R|DYSF_uc010fei.2_Missense_Mutation_p.P668R|DYSF_uc010fek.2_Missense_Mutation_p.P669R|DYSF_uc010fej.2_Missense_Mutation_p.P638R|DYSF_uc010fel.2_Missense_Mutation_p.P638R|DYSF_uc010feo.2_Missense_Mutation_p.P683R|DYSF_uc010fem.2_Missense_Mutation_p.P652R|DYSF_uc010fen.2_Missense_Mutation_p.P669R|DYSF_uc002sif.2_Missense_Mutation_p.P652R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	651	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TACTACCTACCCTGGGGTAAC	0.597													3	17					0	0	0.004672	0	0
DCTN1	1639	broad.mit.edu	37	2	74593086	74593086	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:74593086G>A	uc002skx.2	-	24	3131	c.2820C>T	c.(2818-2820)GGC>GGT	p.G940G	SLC4A5_uc002skl.2_5'Flank|DCTN1_uc002skt.1_5'Flank|DCTN1_uc002skv.2_Silent_p.G806G|DCTN1_uc002sku.2_Silent_p.G806G|DCTN1_uc002skw.1_Silent_p.G916G|DCTN1_uc010ffd.2_Silent_p.G920G|DCTN1_uc002sky.2_Silent_p.G903G	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	940					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						TCAAACCCAGGCCTTCAGCAT	0.537													25	89					0	0	0.004656	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101409	80101409	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:80101409G>A	uc010ysh.1	+	5	798	c.793G>A	c.(793-795)GAC>AAC	p.D265N	CTNNA2_uc010yse.1_Missense_Mutation_p.D265N|CTNNA2_uc010ysf.1_Missense_Mutation_p.D265N|CTNNA2_uc010ysg.1_Missense_Mutation_p.D265N	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	265					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTCGCCCACTGACGAAGCCAA	0.582													17	56					0	0	0.004007	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874951	80874951	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:80874951C>T	uc010ysh.1	+	18	2821	c.2816C>T	c.(2815-2817)TCG>TTG	p.S939L	CTNNA2_uc010yse.1_Missense_Mutation_p.S891L|CTNNA2_uc010ysf.1_Missense_Mutation_p.S891L|CTNNA2_uc010ysg.1_Missense_Mutation_p.S846L|CTNNA2_uc010ysi.1_Missense_Mutation_p.S523L|CTNNA2_uc010ysj.1_Missense_Mutation_p.S220L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	939					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AAACACATTTCGCCTGTACAG	0.368													14	122					0	0	0.001855	0	0
RETSAT	54884	broad.mit.edu	37	2	85581623	85581623	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:85581623A>T	uc002spd.2	-	1	199	c.8T>A	c.(7-9)CTT>CAT	p.L3H	ELMOD3_uc010fgg.2_5'Flank|ELMOD3_uc002spf.3_5'Flank|ELMOD3_uc002spg.3_5'Flank|ELMOD3_uc002sph.3_5'Flank|ELMOD3_uc010ysn.1_5'Flank|ELMOD3_uc010yso.1_5'Flank|ELMOD3_uc010ysp.1_5'Flank|RETSAT_uc010ysm.1_Missense_Mutation_p.L3H|RETSAT_uc010fgf.2_Missense_Mutation_p.L3H	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	3					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	CACCAGCGGAAGCCACATCAC	0.612													26	95					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	2	89417058	89417058	+	RNA	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:89417058G>A	uc010ytr.1	-	42		c.4544C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGCAAGTGATGGTGACTCTGT	0.498													29	149					0	0	0.012213	0	0
Unknown	0	broad.mit.edu	37	2	90199105	90199105	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:90199105C>T	uc010fhm.2	+	24		c.3236C>T								Parts of antibodies, mostly variable regions.																		GGCAGTGGATCTGGGACAGAT	0.502													22	117					0	0	0.005443	0	0
KIAA1310	55683	broad.mit.edu	37	2	97271080	97271080	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:97271080G>A	uc002swn.3	-	15	2056	c.1910C>T	c.(1909-1911)CCT>CTT	p.P637L	KIAA1310_uc002swh.3_Missense_Mutation_p.P525L|KIAA1310_uc002swi.3_Missense_Mutation_p.P564L|KIAA1310_uc002swj.3_RNA|KIAA1310_uc002swk.3_Missense_Mutation_p.P550L|KIAA1310_uc010fhz.2_Missense_Mutation_p.P457L|KIAA1310_uc002swl.3_Missense_Mutation_p.P538L|KIAA1310_uc002swm.3_RNA|KIAA1310_uc010yur.1_Missense_Mutation_p.P431L|KIAA1310_uc002swo.2_5'UTR|KIAA1310_uc002swp.1_Missense_Mutation_p.P538L	NM_001115016	NP_001108488	Q9P2N6	K1310_HUMAN	hypothetical protein LOC55683 isoform a	663											0						TCCTTGGGAAGGAGCACAAGG	0.537													8	41					0	0	0.006214	0	0
C2orf55	343990	broad.mit.edu	37	2	99448932	99448932	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:99448932G>A	uc002szf.1	-	5	713	c.419C>T	c.(418-420)CCA>CTA	p.P140L		NM_207362	NP_997245	Q6NV74	CB055_HUMAN	hypothetical protein LOC343990	140											0						AAGCCCCCCTGGAGGAGGTGG	0.507													10	48					0	0	0.006214	0	0
AFF3	3899	broad.mit.edu	37	2	100209733	100209733	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:100209733G>A	uc002tag.2	-	14	2626	c.2390C>T	c.(2389-2391)TCT>TTT	p.S797F	AFF3_uc002taf.2_Missense_Mutation_p.S822F|AFF3_uc010fiq.1_Missense_Mutation_p.S797F|AFF3_uc010yvr.1_Missense_Mutation_p.S950F|AFF3_uc002tah.1_Missense_Mutation_p.S822F	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	797					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGCGCTCTCAGAGTCCTTGGT	0.607													17	62					0	0	0.006122	0	0
CHST10	9486	broad.mit.edu	37	2	101014497	101014497	+	Silent	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:101014497G>T	uc002tam.2	-	5	659	c.300C>A	c.(298-300)CTC>CTA	p.L100L		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	100	Lumenal (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						GAGTGTGCGAGAGATTCTTCA	0.527													20	102					9.95505e-16	1.03719e-15	0.014323	1	0
IL18RAP	8807	broad.mit.edu	37	2	103068610	103068610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:103068610C>T	uc002tbx.2	+	12	2253	c.1769C>T	c.(1768-1770)ACT>ATT	p.T590I	IL18RAP_uc010fiz.2_Missense_Mutation_p.T448I	NM_003853	NP_003844	O95256	I18RA_HUMAN	interleukin 18 receptor accessory protein	590	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|inflammatory response|innate immune response	integral to membrane	transmembrane receptor activity			skin(3)|ovary(2)	5						ACAGAAACCACTGGGAGGAGC	0.512													15	83					0	0	0.002450	0	0
SLC9A4	389015	broad.mit.edu	37	2	103128671	103128671	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:103128671C>T	uc002tbz.3	+	7	1955	c.1498C>T	c.(1498-1500)CAC>TAC	p.H500Y		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	500	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GCTGATGGATCACTTAAAGGC	0.443													20	118					0	0	0.014323	0	0
RGPD3	653489	broad.mit.edu	37	2	107041038	107041038	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:107041038C>T	uc010ywi.1	-	20	3442	c.3385G>A	c.(3385-3387)GCA>ACA	p.A1129T		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1129	RanBD1 1.				intracellular transport		binding			ovary(1)	1						CACATCCATGCTCTATCTGAT	0.428													39	164					0	0	0.008740	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626927	108626927	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:108626927G>A	uc002tdv.2	+	9	1629	c.1353G>A	c.(1351-1353)GAG>GAA	p.E451E	SLC5A7_uc010ywm.1_Silent_p.E204E|SLC5A7_uc010fjj.2_Silent_p.E451E|SLC5A7_uc010ywn.1_Silent_p.E338E	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	451	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CTGGAGGGGAGCCATATCTGT	0.448													11	58					0	0	0.010729	0	0
IL1B	3553	broad.mit.edu	37	2	113588878	113588878	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:113588878T>C	uc002tii.1	-	6	675	c.588A>G	c.(586-588)CTA>CTG	p.L196L	IL1B_uc002tih.1_Silent_p.L165L	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	196					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	CCTCCAGCTGTAGAGTGGGCT	0.493													40	175					0	0	0.011902	0	0
IL1F7	27178	broad.mit.edu	37	2	113671397	113671397	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:113671397C>T	uc002tij.2	+	2	153	c.111C>T	c.(109-111)GGC>GGT	p.G37G	IL1F7_uc002tik.2_Intron|IL1F7_uc002til.2_Silent_p.G37G|IL1F7_uc002tim.2_Intron|IL1F7_uc002tin.2_5'Flank	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	37					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						TGGAACCAGGCCCAAGCCTCC	0.567													5	132					0	0	0.004482	0	0
IL1F7	27178	broad.mit.edu	37	2	113675263	113675263	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:113675263G>A	uc002tij.2	+	4	359	c.317G>A	c.(316-318)GGA>GAA	p.G106E	IL1F7_uc002tik.2_Missense_Mutation_p.G85E|IL1F7_uc002til.2_Missense_Mutation_p.G66E|IL1F7_uc002tim.2_Missense_Mutation_p.G45E|IL1F7_uc002tin.2_Missense_Mutation_p.G80E	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	106					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						GCGGAGAAAGGAAGTCCGATT	0.483													34	139					0	0	0.012213	0	0
INHBB	3625	broad.mit.edu	37	2	121106868	121106868	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:121106868G>A	uc002tmn.2	+	2	688	c.642G>A	c.(640-642)ATG>ATA	p.M214I		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	214					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				GGTGGAACATGGTGGAGAAGA	0.632													23	109					0	0	0.003954	0	0
TFCP2L1	29842	broad.mit.edu	37	2	122005761	122005761	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:122005761C>T	uc002tmx.2	-	5	576	c.483G>A	c.(481-483)AAG>AAA	p.K161K	TFCP2L1_uc010flr.2_Silent_p.K161K	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	161					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					CAGAAGCTCTCTTCGCAGGGT	0.552													4	30					0	0	0.009096	0	0
LOC440905	440905	broad.mit.edu	37	2	130792830	130792830	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:130792830C>T	uc002tpz.2	-	8		c.2499G>A				NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						GAAACCCTTTCCCAGCCTGCA	0.418													5	13					0	0	0.000602	0	0
POTEE	445582	broad.mit.edu	37	2	132021752	132021752	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:132021752C>T	uc002tsn.2	+	15	2776	c.2724C>T	c.(2722-2724)ATC>ATT	p.I908I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.I508I|POTEE_uc002tsl.2_Silent_p.I490I|POTEE_uc010fmy.1_Silent_p.I372I	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	908	Actin-like.						ATP binding				0						AGCGGGAAATCGTGCGTGACA	0.602													15	128					0	0	0.014323	0	0
THSD7B	80731	broad.mit.edu	37	2	137917931	137917931	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:137917931G>A	uc002tva.1	+	5	1425	c.1425G>A	c.(1423-1425)GGG>GGA	p.G475G	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.G365G	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ATCCTCAGGGGAAAAAAGGTG	0.468													9	42					0	0	0.013537	0	0
THSD7B	80731	broad.mit.edu	37	2	138373870	138373870	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:138373870C>T	uc002tva.1	+	17	3462	c.3462C>T	c.(3460-3462)TTC>TTT	p.F1154F	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GCTTCCAGTTCCAGTACAATC	0.433													22	121					0	0	0.002780	0	0
LRP1B	53353	broad.mit.edu	37	2	141777573	141777573	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:141777573C>T	uc002tvj.1	-	12	2860	c.1888G>A	c.(1888-1890)GAA>AAA	p.E630K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	630	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAAGCTTTTTCCAGCCTGGCC	0.428										TSP Lung(27;0.18)			11	74					0	0	0.008291	0	0
NEB	4703	broad.mit.edu	37	2	152499762	152499762	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:152499762G>A	uc010fnx.2	-	58	8253	c.8062C>T	c.(8062-8064)CAT>TAT	p.H2688Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2688	Nebulin 72.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CGGTAAACATGGTCACTCAAA	0.418													21	109					0	0	0.012319	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711814	155711814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:155711814C>T	uc002tyv.1	+	3	1690	c.1495C>T	c.(1495-1497)CGC>TGC	p.R499C	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	499	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GAACTCTGATCGCTTCACATA	0.408													5	17					0	0	0.000602	0	0
PLA2R1	22925	broad.mit.edu	37	2	160898553	160898553	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:160898553C>T	uc002ube.1	-	3	857	c.650G>A	c.(649-651)GGA>GAA	p.G217E	PLA2R1_uc010zcp.1_Missense_Mutation_p.G217E|PLA2R1_uc002ubf.2_Missense_Mutation_p.G217E	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	217	Extracellular (Potential).|Fibronectin type-II.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						AGGGCAAAATCCCCACTTTTC	0.388													17	72					0	0	0.010504	0	0
KCNH7	90134	broad.mit.edu	37	2	163291874	163291874	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:163291874C>T	uc002uch.1	-	8	2000	c.1788G>A	c.(1786-1788)GGG>GGA	p.G596G	KCNH7_uc002uci.2_Silent_p.G589G	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	596	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TGTAACGTTTCCCAATTTGCT	0.428													13	48					0	0	0.002450	0	0
GRB14	2888	broad.mit.edu	37	2	165353901	165353901	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:165353901C>T	uc002ucl.2	-	10	1745	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	GRB14_uc010zcv.1_Missense_Mutation_p.E315K|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	402					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GCGAGTCCTTCTTCAACCGCA	0.403													16	82					0	0	0.007413	0	0
GRB14	2888	broad.mit.edu	37	2	165476271	165476271	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:165476271C>T	uc002ucl.2	-	2	791	c.250G>A	c.(250-252)GAG>AAG	p.E84K	GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	84					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CAGCATAGCTCAGGAAAAGGG	0.338													15	56					0	0	0.004007	0	0
COBLL1	22837	broad.mit.edu	37	2	165578729	165578729	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:165578729G>A	uc010zcw.1	-	9	1174	c.1050C>T	c.(1048-1050)ACC>ACT	p.T350T	COBLL1_uc002ucp.2_Silent_p.T284T|COBLL1_uc002ucq.2_Silent_p.T284T|COBLL1_uc010zcx.1_Silent_p.T330T|COBLL1_uc002ucs.1_RNA|COBLL1_uc002uco.2_Silent_p.T53T	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	322										ovary(2)|pancreas(1)	3						CCGACGGCAGGGTGTTGGAAA	0.537													8	49					0	0	0.003080	0	0
SCN2A	6326	broad.mit.edu	37	2	166243504	166243504	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:166243504G>A	uc002udc.2	+	26	5090	c.4800G>A	c.(4798-4800)GTG>GTA	p.V1600V	SCN2A_uc002udd.2_Silent_p.V1600V|SCN2A_uc002ude.2_Silent_p.V1600V	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1600	Helical; Name=S3 of repeat IV; (Potential).|IV.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTGATTTTGTGGTGGTCATTC	0.333													19	69					0	0	0.012319	0	0
SCN1A	6323	broad.mit.edu	37	2	166896038	166896038	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:166896038G>A	uc010zcz.1	-	14	2469	c.2451C>T	c.(2449-2451)TTC>TTT	p.F817F	SCN1A_uc002udo.3_Silent_p.F697F|SCN1A_uc010fpk.2_Silent_p.F669F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	828	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGCCTTCTTGGAAATAATAGT	0.373													10	33					0	0	0.008291	0	0
SCN9A	6335	broad.mit.edu	37	2	167060535	167060535	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:167060535G>A	uc010fpl.2	-	26	5012	c.4671C>T	c.(4669-4671)TCC>TCT	p.S1557S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1568	IV.|Helical; Name=S2 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AGTGTCTGAGGGAGATCAGTT	0.313													10	18					0	0	0.008291	0	0
SCN9A	6335	broad.mit.edu	37	2	167141319	167141319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:167141319G>A	uc010fpl.2	-	12	1959	c.1618C>T	c.(1618-1620)CGT>TGT	p.R540C	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.R411C|SCN9A_uc002uds.1_Missense_Mutation_p.R411C|SCN9A_uc002udt.1_Missense_Mutation_p.R411C	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	540						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAGGAGCCACGAATGCTGAGT	0.423													7	16					0	0	0.004482	0	0
SCN7A	6332	broad.mit.edu	37	2	167262763	167262763	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:167262763C>T	uc002udu.1	-	25	4503	c.4376G>A	c.(4375-4377)GGG>GAG	p.G1459E		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1459					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						AACTTGAGTCCCAGGGTTAAT	0.373													14	69					0	0	0.003163	0	0
ABCB11	8647	broad.mit.edu	37	2	169791708	169791708	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:169791708G>A	uc002ueo.1	-	23	3168	c.3042C>T	c.(3040-3042)TTC>TTT	p.F1014F	ABCB11_uc010zda.1_Silent_p.F456F|ABCB11_uc010zdb.1_Silent_p.F490F	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1014	Helical; (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ACACATAGCTGAAATGGAGCC	0.393													23	97					0	0	0.002780	0	0
MYO3B	140469	broad.mit.edu	37	2	171056776	171056776	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:171056776G>A	uc002ufy.2	+	3	446	c.303G>A	c.(301-303)CAG>CAA	p.Q101Q	MYO3B_uc002ufv.2_Silent_p.Q88Q|MYO3B_uc010fqb.1_Silent_p.Q88Q|MYO3B_uc002ufz.2_Silent_p.Q101Q|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_Silent_p.Q88Q	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	101	Protein kinase.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						TAGGGGGACAGCTGTGGCTGG	0.453													11	49					0	0	0.010729	0	0
RAPGEF4	11069	broad.mit.edu	37	2	173832016	173832016	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:173832016A>G	uc002uhv.3	+	10	1035	c.848A>G	c.(847-849)AAA>AGA	p.K283R	RAPGEF4_uc002uhu.2_Missense_Mutation_p.K283R|RAPGEF4_uc002uhw.3_Missense_Mutation_p.K139R|RAPGEF4_uc010zec.1_Missense_Mutation_p.K130R|RAPGEF4_uc010zed.1_Missense_Mutation_p.K112R|RAPGEF4_uc010zee.1_Missense_Mutation_p.K130R|RAPGEF4_uc010fqo.2_Missense_Mutation_p.K112R|RAPGEF4_uc010zef.1_Missense_Mutation_p.K63R|RAPGEF4_uc010zeg.1_Missense_Mutation_p.K110R|RAPGEF4_uc010fqp.1_Missense_Mutation_p.K63R|RAPGEF4_uc010zeh.1_Missense_Mutation_p.K63R	NM_007023	NP_008954	Q8WZA2	RPGF4_HUMAN	Rap guanine nucleotide exchange factor (GEF) 4	283	DEP.				blood coagulation|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of insulin secretion|regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex|membrane fraction|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity|Ras GTPase binding|Ras guanyl-nucleotide exchange factor activity			large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.194)			TTCCAAGACAAATATTTATTC	0.498													6	17					0	0	0.004482	0	0
HOXD3	3232	broad.mit.edu	37	2	177036879	177036879	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:177036879C>T	uc002ukt.1	+	3	1352	c.1176C>T	c.(1174-1176)GCC>GCT	p.A392A		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	392					anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		ACAGTTGCGCCGCGCAGATTC	0.662													4	30					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179439727	179439727	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179439727A>G	uc010zfg.1	-	275	63652	c.63428T>C	c.(63427-63429)ATT>ACT	p.I21143T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.I14838T|TTN_uc010zfi.1_Missense_Mutation_p.I14771T|TTN_uc010zfj.1_Missense_Mutation_p.I14646T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22070							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTCCTACAATGTTCCTTGC	0.403													3	36					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179464536	179464536	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179464536C>T	uc010zfg.1	-	238	48612	c.48388G>A	c.(48388-48390)GAA>AAA	p.E16130K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E9825K|TTN_uc010zfi.1_Missense_Mutation_p.E9758K|TTN_uc010zfj.1_Missense_Mutation_p.E9633K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17057							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGTTCCTTCTTCAACCTCC	0.383													10	39					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179486223	179486223	+	Missense_Mutation	SNP	C	T	T	rs17354992	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179486223C>T	uc010zfg.1	-	194	37848	c.37624G>A	c.(37624-37626)GAT>AAT	p.D12542N	TTN_uc010zfh.1_Missense_Mutation_p.D6237N|TTN_uc010zfi.1_Missense_Mutation_p.D6170N|TTN_uc010zfj.1_Missense_Mutation_p.D6045N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13469							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTTTGCCATCGGTTCGAGAG	0.398													13	54					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179569654	179569654	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179569654C>T	uc010zfg.1	-	101	26136	c.25912G>A	c.(25912-25914)GAA>AAA	p.E8638K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5299K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9565							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTCAAATTCCTTTTCGTCC	0.323													18	113					0	0	0.014323	0	0
TTN	7273	broad.mit.edu	37	2	179591999	179591999	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179591999C>T	uc010zfg.1	-	66	16585	c.16361G>A	c.(16360-16362)AGA>AAA	p.R5454K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R2115K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6381							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACACAACTCTGATTTCTGG	0.418													5	26					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179615579	179615579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179615579C>T	uc002unb.2	-	46	11772	c.11548G>A	c.(11548-11550)GAG>AAG	p.E3850K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9685							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGATGACTCTCCAATTGTA	0.373													8	84					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179616325	179616325	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179616325C>T	uc002unb.2	-	46	11026	c.10802G>A	c.(10801-10803)GGG>GAG	p.G3601E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	3596							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCATCTTGCCCTTTTTGGAT	0.383													15	104					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179648473	179648473	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179648473G>A	uc010zfg.1	-	17	3039	c.2815C>T	c.(2815-2817)CCT>TCT	p.P939S	TTN_uc010zfh.1_Missense_Mutation_p.P893S|TTN_uc010zfi.1_Missense_Mutation_p.P893S|TTN_uc010zfj.1_Missense_Mutation_p.P893S|TTN_uc002unb.2_Missense_Mutation_p.P939S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	939							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGAGTAACAGGAATTTCAACA	0.348													7	50					0	0	0.004482	0	0
CCDC141	285025	broad.mit.edu	37	2	179720245	179720245	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:179720245T>C	uc002unf.1	-	9	1221	c.1164A>G	c.(1162-1164)AAA>AAG	p.K388K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	388	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TATTACTAACTTTTTCCATTT	0.284													6	33					0	0	0.001984	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802120	185802120	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:185802120C>T	uc002uph.2	+	4	2591	c.1997C>T	c.(1996-1998)TCC>TTC	p.S666F		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	666						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GAATCCATATCCTTAAGTGAC	0.318													9	59					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	2	186697897	186697897	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:186697897C>T	uc002upm.2	+	7		c.3750C>T			uc010zfu.1_Nonsense_Mutation_p.Q1388*					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		GGTGTTTTCTCAATGTAACAC	0.378													4	31					0	0	0.000602	0	0
DIRC1	116093	broad.mit.edu	37	2	189599568	189599568	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:189599568G>A	uc002uqi.1	-	2	351	c.80C>T	c.(79-81)TCC>TTC	p.S27F		NM_052952	NP_443184	Q969H9	DIRC1_HUMAN	disrupted in renal carcinoma 1	27											0			OV - Ovarian serous cystadenocarcinoma(117;0.00842)|Epithelial(96;0.102)			CAAGTAACAGGAAACAGGCTT	0.532													17	52					0	0	0.004990	0	0
COL3A1	1281	broad.mit.edu	37	2	189870087	189870087	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:189870087G>A	uc002uqj.1	+	41	3060	c.2943G>A	c.(2941-2943)GGG>GGA	p.G981G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	981	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding	p.G981G(1)		central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GTGAAAGTGGGAAACCAGGAG	0.428													20	84					0	0	0.002780	0	0
DNAH7	56171	broad.mit.edu	37	2	196729392	196729392	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:196729392G>A	uc002utj.3	-	41	7088	c.6987C>T	c.(6985-6987)ATC>ATT	p.I2329I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2329	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCTGCTTCAGGATCCTGGAAA	0.453													12	31					0	0	0.010729	0	0
CASP10	843	broad.mit.edu	37	2	202074214	202074214	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:202074214C>T	uc002uxl.1	+	9	1762	c.1344C>T	c.(1342-1344)TCC>TCT	p.S448S	CASP10_uc002uxj.1_Silent_p.S448S|CASP10_uc002uxk.1_Silent_p.S405S|CASP10_uc010fta.1_Silent_p.S381S|CASP10_uc002uxm.1_Silent_p.S405S|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	448					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GCTATGTATCCTTTCGGCATG	0.498													23	92					0	0	0.002780	0	0
ADAM23	8745	broad.mit.edu	37	2	207310197	207310197	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:207310197C>T	uc002vbq.2	+	2	604	c.381C>T	c.(379-381)AGC>AGT	p.S127S	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	127					cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		ACTCGGAAAGCCCTTATCACG	0.403													22	134					0	0	0.002780	0	0
C2orf80	389073	broad.mit.edu	37	2	209047720	209047720	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:209047720C>T	uc002vcr.2	-	4	347	c.175G>A	c.(175-177)GAA>AAA	p.E59K		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	59										skin(1)	1						GTTAAGTCTTCTGAGGGATCC	0.458													34	106					0	0	0.005524	0	0
C2orf80	389073	broad.mit.edu	37	2	209051686	209051686	+	Missense_Mutation	SNP	C	T	T	rs138681111		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:209051686C>T	uc002vcr.2	-	2	197	c.25G>A	c.(25-27)GAA>AAA	p.E9K		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	9								p.E9K(1)		skin(1)	1						TTTTTCATTTCCTTCTTTATG	0.423													8	29					0	0	0.003080	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190278	209190278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:209190278C>T	uc002vcz.2	+	20	2901	c.2743C>T	c.(2743-2745)CCT>TCT	p.P915S	PIKFYVE_uc010fun.1_Missense_Mutation_p.P596S|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P859S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	915					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CCCCTGGGATCCTGACATCCC	0.502													5	44					0	0	0.000602	0	0
ABCA12	26154	broad.mit.edu	37	2	215854056	215854056	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:215854056G>A	uc002vew.2	-	26	4046	c.3826C>T	c.(3826-3828)CCA>TCA	p.P1276S	ABCA12_uc002vev.2_Missense_Mutation_p.P958S|ABCA12_uc010zjn.1_Missense_Mutation_p.P203S	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1276					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTCATACCTGGGAAGACATTC	0.338													10	24					0	0	0.010729	0	0
RUFY4	285180	broad.mit.edu	37	2	218940409	218940409	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:218940409C>T	uc002vgw.2	+	10	2519	c.675C>T	c.(673-675)ACC>ACT	p.T225T	RUFY4_uc002vgy.1_RNA|RUFY4_uc010fvl.1_Silent_p.T225T	NM_198483	NP_940885	Q6ZNE9	RUFY4_HUMAN	RUN and FYVE domain containing 4	398							metal ion binding			pancreas(1)	1		Renal(207;0.0915)		Epithelial(149;4.11e-06)|all cancers(144;0.000519)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CAGAAGTGACCCTTGTGGCCA	0.572													16	79					0	0	0.008871	0	0
TTLL4	9654	broad.mit.edu	37	2	219617597	219617597	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:219617597C>A	uc002viy.2	+	17	3458	c.3088C>A	c.(3088-3090)CAT>AAT	p.H1030N	TTLL4_uc010zkl.1_Missense_Mutation_p.H865N|TTLL4_uc010fvx.2_Missense_Mutation_p.H966N|TTLL4_uc010zkm.1_Missense_Mutation_p.H233N	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1030					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TTTTCCTTCTCATATCTCCTC	0.448													26	107					4.7796e-09	4.94523e-09	0.004656	1	0
GLB1L	79411	broad.mit.edu	37	2	220102567	220102567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:220102567G>A	uc002vkm.2	-	15	1693	c.1454C>T	c.(1453-1455)TCT>TTT	p.S485F	GLB1L_uc002vkk.2_Missense_Mutation_p.S242F|GLB1L_uc010zkx.1_Missense_Mutation_p.S395F|GLB1L_uc002vkn.2_Missense_Mutation_p.S485F	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	485					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTGCTGTTAGACCCAAAGCT	0.443													10	66					0	0	0.008291	0	0
KIAA1486	57624	broad.mit.edu	37	2	226273743	226273743	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:226273743G>A	uc002voe.2	+	2	322	c.147G>A	c.(145-147)TTG>TTA	p.L49L	KIAA1486_uc010fxa.1_Silent_p.L44L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	49										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		ATGATCGCTTGAGAAATGAAA	0.373													7	37					0	0	0.001984	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881126	228881126	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:228881126G>A	uc002vpq.2	-	7	4491	c.4444C>T	c.(4444-4446)CAT>TAT	p.H1482Y	SPHKAP_uc002vpp.2_Missense_Mutation_p.H1482Y|SPHKAP_uc010zlx.1_Missense_Mutation_p.H1482Y	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1482						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACTCACCTATGGATTTGACAA	0.443													29	142					0	0	0.012213	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886633	228886633	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:228886633C>T	uc002vpq.2	-	6	538	c.491G>A	c.(490-492)AGA>AAA	p.R164K	SPHKAP_uc002vpp.2_Missense_Mutation_p.R164K|SPHKAP_uc010zlx.1_Missense_Mutation_p.R164K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	164						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACTGTTTGGTCTGTTCCCTCT	0.433													7	24					0	0	0.001984	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910950	230910950	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:230910950C>T	uc002vqd.1	-	4	1255	c.892G>A	c.(892-894)GAG>AAG	p.E298K	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.E298K|SLC16A14_uc002vqf.2_Missense_Mutation_p.E298K	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	298	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		TACCAGTCCTCGAAGCCCTTC	0.512													4	36					0	0	0.009096	0	0
SP110	3431	broad.mit.edu	37	2	231067390	231067390	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:231067390A>G	uc002vqh.3	-	9	1193	c.953T>C	c.(952-954)GTT>GCT	p.V318A	SP110_uc002vqg.3_Missense_Mutation_p.V318A|SP110_uc002vqi.3_Missense_Mutation_p.V318A|SP110_uc010fxk.2_Missense_Mutation_p.V316A|SP110_uc010fxj.2_Intron	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	318					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CTTTTGAGGAACCTGATCCAC	0.453													18	112					0	0	0.012319	0	0
SP140	11262	broad.mit.edu	37	2	231155266	231155266	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:231155266G>A	uc002vql.2	+	19	1927	c.1812G>A	c.(1810-1812)AAG>AAA	p.K604K	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Silent_p.K490K|SP140_uc002vqm.2_Silent_p.K544K|SP140_uc010fxl.2_Silent_p.K577K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	604	SAND.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TACATAAGAAGAAATTGCAGC	0.398													8	44					0	0	0.004482	0	0
SP140	11262	broad.mit.edu	37	2	231174672	231174672	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:231174672G>A	uc002vql.2	+	23	2207	c.2092G>A	c.(2092-2094)GAC>AAC	p.D698N	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Missense_Mutation_p.D584N|SP140_uc002vqm.2_Missense_Mutation_p.D638N|SP140_uc010fxl.2_Missense_Mutation_p.D671N	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	698	PHD-type.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GGTGTGCCGGGACGGAGGGGA	0.542													20	116					0	0	0.003330	0	0
ALPP	250	broad.mit.edu	37	2	233246055	233246055	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:233246055G>A	uc002vsq.2	+	10	1452	c.1287G>A	c.(1285-1287)CCG>CCA	p.P429P	ALPP_uc002vsr.2_RNA	NM_001632	NP_001623	P05187	PPB1_HUMAN	placental alkaline phosphatase preproprotein	429						anchored to membrane|cell surface|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;4.45e-22)|Kidney(3;4.42e-11)|KIRC - Kidney renal clear cell carcinoma(3;1.9e-09)|BRCA - Breast invasive adenocarcinoma(100;0.000767)|Lung(119;0.00566)|LUSC - Lung squamous cell carcinoma(224;0.00746)|STAD - Stomach adenocarcinoma(3;0.0181)|GBM - Glioblastoma multiforme(43;0.196)		GCGCCCGGCCGGATGTTACCG	0.697													9	63					0	0	0.008291	0	0
ALPI	248	broad.mit.edu	37	2	233322995	233322995	+	Missense_Mutation	SNP	G	A	A	rs151137290		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:233322995G>A	uc002vst.3	+	9	1137	c.1060G>A	c.(1060-1062)GAC>AAC	p.D354N	ALPI_uc002vsu.3_Missense_Mutation_p.D265N	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	354					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGTCATGTTCGACGACGCCAT	0.622													14	66					0	0	0.002450	0	0
NGEF	25791	broad.mit.edu	37	2	233756070	233756070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:233756070G>A	uc002vts.2	-	8	1518	c.1270C>T	c.(1270-1272)CAG>TAG	p.Q424*	NGEF_uc010zmm.1_Nonsense_Mutation_p.Q147*|NGEF_uc010fyg.1_Nonsense_Mutation_p.Q332*	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	424	DH.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GGCTGTACCTGGACCAACAGC	0.597													20	79					0	0	0.014323	0	0
COL6A3	1293	broad.mit.edu	37	2	238275864	238275864	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:238275864G>A	uc002vwl.2	-	11	5251	c.4966C>T	c.(4966-4968)CAG>TAG	p.Q1656*	COL6A3_uc002vwo.2_Nonsense_Mutation_p.Q1450*|COL6A3_uc010znj.1_Nonsense_Mutation_p.Q1049*	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1656	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGCACTTCCTGGAAACTGTCC	0.438													5	33					0	0	0.001168	0	0
C2orf85	285093	broad.mit.edu	37	2	242814358	242814358	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:242814358C>T	uc010fzu.1	+	2	674	c.651C>T	c.(649-651)CCC>CCT	p.P217P		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	217						integral to membrane				ovary(1)	1						ACCAGGTGCCCATCGCTGAGG	0.672													15	51					0	0	0.004007	0	0
PDYN	5173	broad.mit.edu	37	20	1961131	1961131	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:1961131C>T	uc010gaj.2	-	3	845	c.603G>A	c.(601-603)GAG>GAA	p.E201E	uc002wfu.1_Intron|PDYN_uc002wfv.2_Silent_p.E201E|PDYN_uc010zpt.1_Silent_p.E46E	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	201					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGTACAGGTCCTCATGGCCCA	0.592													30	89					0	0	0.013726	0	0
DDRGK1	65992	broad.mit.edu	37	20	3171860	3171860	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:3171860G>A	uc002wic.2	-	8	776	c.754C>T	c.(754-756)CTG>TTG	p.L252L	DDRGK1_uc010gaw.2_RNA	NM_023935	NP_076424	Q96HY6	DDRGK_HUMAN	DDRGK domain containing 1 precursor	252	PCI.					endoplasmic reticulum	protein binding				0						TCAGCCAGCAGGTCCTGGATG	0.527													14	60					0	0	0.004990	0	0
MCM8	84515	broad.mit.edu	37	20	5963670	5963670	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:5963670T>G	uc002wmi.2	+	14	1969	c.1592T>G	c.(1591-1593)TTG>TGG	p.L531W	MCM8_uc002wmj.2_Missense_Mutation_p.L515W|MCM8_uc002wmk.2_Missense_Mutation_p.L571W|MCM8_uc002wml.2_Missense_Mutation_p.L531W|MCM8_uc010gbp.2_Missense_Mutation_p.L484W|MCM8_uc002wmm.2_Missense_Mutation_p.L69W	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	531	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						CAAGCCTTGTTGGAAGCCATG	0.398													7	46					0	0	0.004482	0	0
PAK7	57144	broad.mit.edu	37	20	9538273	9538273	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:9538273G>A	uc002wnl.2	-	8	2270	c.1725C>T	c.(1723-1725)CTC>CTT	p.L575L	PAK7_uc002wnk.2_Silent_p.L575L|PAK7_uc002wnj.2_Silent_p.L575L|PAK7_uc010gby.1_Silent_p.L575L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	575	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CGCTTGTCAGGAGGATGGAGT	0.448													12	45					0	0	0.002450	0	0
ANKRD5	63926	broad.mit.edu	37	20	10036182	10036182	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:10036182G>A	uc002wno.2	+	11	2598	c.2205G>A	c.(2203-2205)CTG>CTA	p.L735L	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.L735L|ANKRD5_uc010gbz.2_Silent_p.L546L	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	735							calcium ion binding			ovary(1)|breast(1)	2						CAGCAGAGCTGATCAGGAAGA	0.438													7	31					0	0	0.003080	0	0
JAG1	182	broad.mit.edu	37	20	10625626	10625626	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:10625626G>A	uc002wnw.2	-	18	2745	c.2229C>T	c.(2227-2229)GCC>GCT	p.A743A	JAG1_uc010gcd.1_Silent_p.A301A	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	743	Extracellular (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						TACTGTTTCGGGCTATAAAAG	0.567									Alagille_Syndrome				39	195					0	0	0.010771	0	0
FLRT3	23767	broad.mit.edu	37	20	14306665	14306665	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:14306665A>C	uc002wov.1	-	3	1955	c.1488T>G	c.(1486-1488)TGT>TGG	p.C496W	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.C496W	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	496	Extracellular (Potential).|Fibronectin type-III.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		CAGTCTCAATACAAACAGGAG	0.448													5	131					0	0	0.000602	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665951	19665951	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:19665951G>A	uc002wrl.2	+	12	1467	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	424	Cytoplasmic (Potential).|Poly-Glu.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						tgatgaggaggaagaggagga	0.393													10	56					0	0	0.010729	0	0
HM13	81502	broad.mit.edu	37	20	30102407	30102407	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:30102407C>T	uc002wwe.2	+	1	167	c.53C>T	c.(52-54)CCC>CTC	p.P18L	HM13_uc002wwc.2_Missense_Mutation_p.P18L|HM13_uc002wwd.2_Missense_Mutation_p.P18L|HM13_uc002wwb.1_Missense_Mutation_p.P18L	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	18	Lumenal (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			GCAGGCGGCCCCACCAACAGC	0.697													7	19					0	0	0.003080	0	0
BPIL1	80341	broad.mit.edu	37	20	31607447	31607447	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:31607447C>T	uc002wyj.2	+	11	1165	c.971C>T	c.(970-972)CCT>CTT	p.P324L		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	324						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GGTGCCACACCTGTGGCCATG	0.672													16	38					0	0	0.004990	0	0
ZNF341	84905	broad.mit.edu	37	20	32357965	32357965	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:32357965C>T	uc002wzy.2	+	10	1509	c.1489C>T	c.(1489-1491)CAC>TAC	p.H497Y	ZNF341_uc002wzx.2_Missense_Mutation_p.H490Y|ZNF341_uc010geq.2_Missense_Mutation_p.H407Y|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	497	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CATCAAGAGCCACCAGGAGGA	0.597													13	31					0	0	0.002450	0	0
ITCH	83737	broad.mit.edu	37	20	33077189	33077189	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:33077189G>A	uc010geu.1	+	22	2527	c.2335G>A	c.(2335-2337)GAG>AAG	p.E779K	ITCH_uc002xak.2_Missense_Mutation_p.E738K|ITCH_uc010zuj.1_Missense_Mutation_p.E628K	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	779	HECT.				apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						AAAGGAATTAGAGGTAATGAA	0.368													7	73					0	0	0.003080	0	0
FAM83C	128876	broad.mit.edu	37	20	33874510	33874510	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:33874510C>T	uc010zux.1	-	4	2190	c.2072G>A	c.(2071-2073)GGG>GAG	p.G691E	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.G346E	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	691										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CTGCCTGGCCCCGTGCAACTG	0.612													17	105					0	0	0.004990	0	0
SLA2	84174	broad.mit.edu	37	20	35269686	35269686	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:35269686G>A	uc002xfv.2	-	2	415	c.53C>T	c.(52-54)TCC>TTC	p.S18F	SLA2_uc002xfu.2_Missense_Mutation_p.S18F	NM_032214	NP_115590	Q9H6Q3	SLAP2_HUMAN	Src-like-adaptor 2 isoform a	18					antigen receptor-mediated signaling pathway|B cell mediated immunity|intracellular receptor mediated signaling pathway|negative regulation of B cell activation|negative regulation of calcium-mediated signaling|negative regulation of transcription from RNA polymerase II promoter|T cell activation	cytoplasmic membrane-bounded vesicle|endosome membrane|plasma membrane	protein N-terminus binding|SH3/SH2 adaptor activity				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				TTGGACAGAGGAACTCAAGCT	0.542													10	99					0	0	0.008291	0	0
C20orf132	140699	broad.mit.edu	37	20	35738679	35738679	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:35738679C>T	uc010zvu.1	-	24	3015	c.2924G>A	c.(2923-2925)AGA>AAA	p.R975K	C20orf132_uc002xgk.2_Missense_Mutation_p.R597K	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				GACTGCTGATCTTCTGATGGG	0.373													54	121					0	0	0.014410	0	0
CDH22	64405	broad.mit.edu	37	20	44828153	44828153	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:44828153G>A	uc002xrm.2	-	7	1733	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I	CDH22_uc010ghk.1_Silent_p.I444I	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	444	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				TGTCCGCATCGATATCGAAGA	0.632													21	41					0	0	0.002780	0	0
CDH22	64405	broad.mit.edu	37	20	44869675	44869675	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:44869675C>T	uc002xrm.2	-	2	878	c.477G>A	c.(475-477)CAG>CAA	p.Q159Q	CDH22_uc010ghk.1_Silent_p.Q159Q	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	159	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CATTGATGTCCTGCACCTTGA	0.647													16	100					0	0	0.007413	0	0
PTGIS	5740	broad.mit.edu	37	20	48130930	48130930	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:48130930C>T	uc002xut.2	-	7	912	c.858G>A	c.(856-858)GGG>GGA	p.G286G	PTGIS_uc010zyi.1_Silent_p.G147G	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	286					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GACCCATATTCCCCTGCAAGG	0.597													12	31					0	0	0.010729	0	0
CTCFL	140690	broad.mit.edu	37	20	56098238	56098238	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:56098238C>T	uc010gix.1	-	2	1302	c.640G>A	c.(640-642)GAA>AAA	p.E214K	CTCFL_uc010giw.1_Missense_Mutation_p.E214K|CTCFL_uc002xym.2_Missense_Mutation_p.E214K|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Missense_Mutation_p.E214K|CTCFL_uc010gjb.1_Missense_Mutation_p.E214K|CTCFL_uc010gjc.1_Missense_Mutation_p.E214K|CTCFL_uc010gjd.1_Missense_Mutation_p.E214K|CTCFL_uc010gje.2_Missense_Mutation_p.E214K|CTCFL_uc010gjf.2_Missense_Mutation_p.E9K|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Missense_Mutation_p.E214K|CTCFL_uc010gji.1_Missense_Mutation_p.E9K|CTCFL_uc010gjj.1_Missense_Mutation_p.E214K|CTCFL_uc010gjk.1_Missense_Mutation_p.E214K|CTCFL_uc010gjl.1_Missense_Mutation_p.E214K	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	214					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			AGAACAATTTCGTCACTTCTT	0.403													22	111					0	0	0.014323	0	0
ZNF831	128611	broad.mit.edu	37	20	57828183	57828183	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:57828183G>A	uc002yan.2	+	4	4178	c.4178G>A	c.(4177-4179)CGA>CAA	p.R1393Q		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1393						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					ATGGACAAACGAACTGTGAAG	0.468													20	121					0	0	0.002780	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834905	61834905	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:61834905G>A	uc002yeh.2	-	4	681	c.387C>T	c.(385-387)TTC>TTT	p.F129F	YTHDF1_uc011aaq.1_Silent_p.F79F	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	129										ovary(2)	2						CCCATGCTGAGAACGCAGGGT	0.567													24	49					0	0	0.002780	0	0
YTHDF1	54915	broad.mit.edu	37	20	61835041	61835041	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:61835041G>A	uc002yeh.2	-	4	545	c.251C>T	c.(250-252)CCA>CTA	p.P84L	YTHDF1_uc011aaq.1_Missense_Mutation_p.P34L	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	84										ovary(2)	2						GGTGAGGTATGGAATCGGAGG	0.547													37	86					0	0	0.005524	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981989	61981989	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:61981989G>A	uc002yes.2	-	5	952	c.774C>T	c.(772-774)TCC>TCT	p.S258S	CHRNA4_uc002yet.1_Silent_p.S82S|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.S187S|CHRNA4_uc002yev.1_Silent_p.S82S|CHRNA4_uc010gkf.1_Silent_p.S82S	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	258	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CGGTGAGGCAGGAGATGAGCA	0.602													27	44					0	0	0.008361	0	0
B3GALT5	10317	broad.mit.edu	37	21	41032912	41032912	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr21:41032912C>T	uc002yyb.1	+	5	1018	c.426C>T	c.(424-426)GTC>GTT	p.V142V	B3GALT5_uc002yye.2_Silent_p.V142V|B3GALT5_uc002yyi.1_Silent_p.V142V|B3GALT5_uc002yyj.1_Silent_p.V142V|B3GALT5_uc002yyk.1_Silent_p.V142V|B3GALT5_uc002yyl.1_Silent_p.V142V|B3GALT5_uc002yym.1_Silent_p.V142V	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	142	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				TAGAATGGGTCCATCGCTTTT	0.463													10	93					0	0	0.010729	0	0
COL6A2	1292	broad.mit.edu	37	21	47552145	47552145	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr21:47552145C>T	uc002zia.1	+	28	2821	c.2739C>T	c.(2737-2739)TCC>TCT	p.S913S	COL6A2_uc002zib.1_Silent_p.S319S|COL6A2_uc002zic.1_5'UTR|COL6A2_uc010gqe.1_RNA	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	913	Nonhelical region.|VWFA 3.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		ACCTGAACTCCTTCTCGCACG	0.672													3	14					0	0	0.009096	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073323	17073323	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:17073323C>T	uc002zlp.1	-	1	378	c.118G>A	c.(118-120)GTC>ATC	p.V40I		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	40					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AGGGTCTGGACTGCAGCCAAG	0.642													14	58					0	0	0.003163	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073418	17073418	+	Missense_Mutation	SNP	G	A	A	rs148171132		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:17073418G>A	uc002zlp.1	-	1	283	c.23C>T	c.(22-24)GCC>GTC	p.A8V		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	8					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CAGCTCCAGGGCTGAAGGGAC	0.642													9	48					0	0	0.006214	0	0
DGCR2	9993	broad.mit.edu	37	22	19055628	19055628	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:19055628G>A	uc002zoq.1	-	3	561	c.313C>T	c.(313-315)CCC>TCC	p.P105S	DGCR2_uc002zor.1_5'UTR|DGCR2_uc011agr.1_Missense_Mutation_p.P64S	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	105	Extracellular (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					AAGCGAACGGGCTGCGCCACG	0.642													8	35					0	0	0.006214	0	0
MYO18B	84700	broad.mit.edu	37	22	26224751	26224751	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:26224751C>T	uc003abz.1	+	15	3045	c.2795C>T	c.(2794-2796)TCC>TTC	p.S932F	MYO18B_uc003aca.1_Missense_Mutation_p.S813F|MYO18B_uc010guy.1_Missense_Mutation_p.S813F|MYO18B_uc010guz.1_Missense_Mutation_p.S813F|MYO18B_uc011aka.1_Missense_Mutation_p.S86F|MYO18B_uc011akb.1_Missense_Mutation_p.S445F	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	932	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGATCCTTTTCCTCCCACCAT	0.463													11	58					0	0	0.001855	0	0
CCDC157	550631	broad.mit.edu	37	22	30772336	30772336	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:30772336G>A	uc011aku.1	+	11	2606	c.1946G>A	c.(1945-1947)GGG>GAG	p.G649E	CCDC157_uc011akv.1_Missense_Mutation_p.G649E|uc003aho.1_5'Flank	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	649										central_nervous_system(1)	1						ACATCCCCAGGGTGAGTGAGG	0.577													13	43					0	0	0.002450	0	0
FOXRED2	80020	broad.mit.edu	37	22	36892167	36892167	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:36892167C>T	uc003apn.3	-	6	1579	c.1471G>A	c.(1471-1473)GGG>AGG	p.G491R	FOXRED2_uc003apm.3_Missense_Mutation_p.G43R|FOXRED2_uc003apo.3_Missense_Mutation_p.G491R|FOXRED2_uc003app.3_Missense_Mutation_p.G491R	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	491					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						ACGAAGAGCCCGTGCTTTGCC	0.547													13	109					0	0	0.002450	0	0
ELFN2	114794	broad.mit.edu	37	22	37770430	37770430	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:37770430G>A	uc003asq.3	-	3	1931	c.1145C>T	c.(1144-1146)CCC>CTC	p.P382L		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	382	Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					TCCGGGGACGGGGTCCCGCGT	0.637													9	60					0	0	0.004482	0	0
ANKRD54	129138	broad.mit.edu	37	22	38240228	38240228	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:38240228C>T	uc003auc.2	-	1	76	c.18G>A	c.(16-18)GGG>GGA	p.G6G	ANKRD54_uc003aud.2_5'UTR	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	6											0	Melanoma(58;0.045)					CGTCCGCGTCCCCGGCGGCGG	0.736													3	14					0	0	0.004672	0	0
GTPBP1	9567	broad.mit.edu	37	22	39112978	39112978	+	Silent	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:39112978C>G	uc003awg.2	+	4	961	c.807C>G	c.(805-807)GGC>GGG	p.G269G		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	269					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					GCATGACAGGCCATCTGCCTG	0.537													11	54					0	0	0.010729	0	0
NPTXR	23467	broad.mit.edu	37	22	39219206	39219206	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:39219206G>A	uc003awk.2	-	4	1314	c.1160C>T	c.(1159-1161)ACC>ATC	p.T387I		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	387	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					ATCCCTTGTGGTCCAGGCGAT	0.647													10	47					0	0	0.010729	0	0
TNRC6B	23112	broad.mit.edu	37	22	40662517	40662517	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:40662517G>A	uc011aor.1	+	5	2494	c.2283G>A	c.(2281-2283)TGG>TGA	p.W761*	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Nonsense_Mutation_p.W761*|TNRC6B_uc003ayo.2_Nonsense_Mutation_p.W565*	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	761					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						ACAGCAATTGGGAAAGTTCTG	0.517													3	28					0	0	0.004672	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735146	41735146	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:41735146C>T	uc003azw.2	+	9	983	c.767C>T	c.(766-768)TCA>TTA	p.S256L	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	272	LD motif; interaction with NSP3.				interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GATGACTTCTCAGACGGGGAT	0.657													11	58					0	0	0.008291	0	0
CYP2D6	1565	broad.mit.edu	37	22	42523897	42523897	+	Missense_Mutation	SNP	G	A	A	rs1135830		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr22:42523897G>A	uc003bce.2	-	6	1022	c.932C>T	c.(931-933)TCG>TTG	p.S311L	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_Missense_Mutation_p.S5L|CYP2D6_uc003bcf.2_Missense_Mutation_p.S260L	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	311							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						CAGCGTGGTCGAGGTGGTCAC	0.617													19	75					0	0	0.008871	0	0
FANCD2	2177	broad.mit.edu	37	3	10130618	10130618	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:10130618T>C	uc003buw.2	+	36	3745	c.3667T>C	c.(3667-3669)TTC>CTC	p.F1223L	FANCD2_uc003bux.1_Missense_Mutation_p.F1223L|FANCD2_uc003buy.1_Missense_Mutation_p.F1223L|FANCD2_uc010hcw.1_RNA|C3orf24_uc003buz.2_Intron	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	1223					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		TTCCTCCACATTCCCTACACT	0.388			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				18	92					0	0	0.006122	0	0
PLCL2	23228	broad.mit.edu	37	3	17051844	17051844	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:17051844C>T	uc011awc.1	+	5	1087	c.982C>T	c.(982-984)CAT>TAT	p.H328Y	PLCL2_uc010het.1_Intron|PLCL2_uc011awd.1_Missense_Mutation_p.H210Y	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	336					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TGAGGTTTTTCATGAGCTTTG	0.338													12	37					0	0	0.013537	0	0
ZNF385D	79750	broad.mit.edu	37	3	21462796	21462796	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:21462796G>A	uc003cce.2	-	8	1506	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	366						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						CGGAAGTCTGGAACAGTGTTG	0.458													6	14					0	0	0.001984	0	0
OSBPL10	114884	broad.mit.edu	37	3	31725376	31725376	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:31725376T>C	uc003cev.2	-	9	1857	c.1476A>G	c.(1474-1476)GAA>GAG	p.E492E	OSBPL10_uc003ceu.1_Silent_p.E249E|OSBPL10_uc011axf.1_Silent_p.E428E	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	492					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		CCTTGGGAACTTCCCAGGAGC	0.542													3	108					0	0	0.009096	0	0
EPM2AIP1	9852	broad.mit.edu	37	3	37033538	37033538	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:37033538C>T	uc003cgk.2	-	1	1258	c.1031G>A	c.(1030-1032)AGA>AAA	p.R344K	MLH1_uc011aye.1_5'Flank|MLH1_uc003cgl.2_5'Flank|MLH1_uc011ayb.1_5'Flank|MLH1_uc010hge.2_5'Flank|MLH1_uc003cgn.3_5'Flank|MLH1_uc011ayc.1_5'Flank|MLH1_uc011ayd.1_5'Flank|MLH1_uc003cgo.2_5'Flank	NM_014805	NP_055620	Q7L775	EPMIP_HUMAN	EPM2A interacting protein 1	344						endoplasmic reticulum					0						AGTTTTCCCTCTCCTAAGCCA	0.413													44	141					0	0	0.010771	0	0
SLC22A13	9390	broad.mit.edu	37	3	38307648	38307648	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:38307648C>T	uc003chz.3	+	1	351	c.297C>T	c.(295-297)CTC>CTT	p.L99L	SLC22A13_uc011aym.1_RNA|SLC22A13_uc011ayn.1_Silent_p.L99L	NM_004256	NP_004247	Q9Y226	S22AD_HUMAN	solute carrier family 22 (organic anion	99	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0533)|Kidney(284;0.067)		AGGACATCCTCAGCCACCGCT	0.587													8	34					0	0	0.003080	0	0
SCN5A	6331	broad.mit.edu	37	3	38601884	38601884	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:38601884G>A	uc003cio.2	-	23	4193	c.3999C>T	c.(3997-3999)TCC>TCT	p.S1333S	SCN5A_uc003cin.2_Silent_p.S1332S|SCN5A_uc003cil.3_Silent_p.S1333S|SCN5A_uc010hhi.2_Silent_p.S1333S|SCN5A_uc010hhk.2_Silent_p.S1332S|SCN5A_uc011ayr.1_Silent_p.S1279S|SCN5A_uc010hhj.1_Silent_p.S943S	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1333			S -> Y (in LQT3 and SIDS).		blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGTTCATGATGGACGGGATGG	0.572													3	32					0	0	0.004672	0	0
SCN10A	6336	broad.mit.edu	37	3	38766673	38766673	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:38766673G>A	uc003ciq.2	-	17	3220	c.3220C>T	c.(3220-3222)CCT>TCT	p.P1074S		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1074					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ACCTCAGCAGGGACCTGAGGA	0.607													9	37					0	0	0.010729	0	0
CTNNB1	1499	broad.mit.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	A	A	rs28931589		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:41266104G>A	uc010hia.1	+	4	257	c.101G>A	c.(100-102)GGA>GAA	p.G34E	CTNNB1_uc003ckp.2_Missense_Mutation_p.G34E|CTNNB1_uc003ckq.2_Missense_Mutation_p.G34E|CTNNB1_uc003ckr.2_Missense_Mutation_p.G34E|CTNNB1_uc011azf.1_Missense_Mutation_p.G27E|CTNNB1_uc011azg.1_Intron|uc010hib.1_RNA	NM_001904	NP_001895	P35222	CTNB1_HUMAN	beta-catenin	34			G -> E (in PTR).|G -> R (in hepatocellular carcinoma).		adherens junction assembly|androgen receptor signaling pathway|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway involved in negative regulation of apoptosis|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell-cell adhesion|cell-matrix adhesion|cellular component disassembly involved in apoptosis|cellular response to growth factor stimulus|cellular response to indole-3-methanol|central nervous system vasculogenesis|cytoskeletal anchoring at plasma membrane|determination of dorsal/ventral asymmetry|dorsal/ventral axis specification|ectoderm development|embryonic axis specification|embryonic foregut morphogenesis|embryonic leg joint morphogenesis|endodermal cell fate commitment|endothelial tube morphogenesis|epithelial to mesenchymal transition|gastrulation with mouth forming second|glial cell fate determination|hair follicle morphogenesis|hair follicle placode formation|hindbrain development|liver development|lung cell differentiation|lung induction|lung-associated mesenchyme development|male genitalia development|mesenchymal cell proliferation involved in lung development|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of osteoclast differentiation|negative regulation of transcription from RNA polymerase II promoter|nephron tubule formation|odontogenesis of dentine-containing tooth|oocyte development|pancreas development|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of branching involved in lung morphogenesis|positive regulation of epithelial cell proliferation involved in prostate gland development|positive regulation of fibroblast growth factor receptor signaling pathway|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of muscle cell differentiation|positive regulation of osteoblast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein localization at cell surface|proximal/distal pattern formation|regulation of angiogenesis|regulation of calcium ion import|regulation of centriole-centriole cohesion|regulation of centromeric sister chromatid cohesion|regulation of fibroblast proliferation|regulation of nephron tubule epithelial cell differentiation|regulation of protein localization at cell surface|regulation of smooth muscle cell proliferation|regulation of T cell proliferation|renal inner medulla development|renal outer medulla development|renal vesicle formation|response to drug|response to estradiol stimulus|Schwann cell proliferation|smooth muscle cell differentiation|synapse organization|synaptic vesicle transport|T cell differentiation in thymus|thymus development|trachea formation	APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin-TCF7L2 complex|catenin complex|cell cortex|cell-substrate adherens junction|centrosome|dendritic shaft|desmosome|fascia adherens|internal side of plasma membrane|lamellipodium|lateral plasma membrane|microvillus membrane|perinuclear region of cytoplasm|protein-DNA complex|synapse|transcription factor complex|Z disc|zonula adherens	alpha-catenin binding|androgen receptor binding|cadherin binding|estrogen receptor binding|I-SMAD binding|ion channel binding|protein binding|protein C-terminus binding|protein kinase binding|protein phosphatase binding|R-SMAD binding|RPTP-like protein binding|signal transducer activity|specific RNA polymerase II transcription factor activity|structural molecule activity|transcription coactivator activity|transcription regulatory region DNA binding	p.G34V(64)|p.G34E(64)|p.A5_A80del(63)|p.G34R(60)|p.H24_S47del(9)|p.A5_A80>D(7)|p.A5_Q143del(7)|p.Q28_H134del(5)|p.W25_I140del(4)|p.V22_G38del(3)|p.T3_A126del(2)|p.M5_N141>D(2)|p.D32_S47del(2)|p.W25_H36del(2)|p.V22_L139>V(2)|p.A5_Y142>D(2)|p.A5fs*7(2)|p.?(2)|p.L10_N141del(2)|p.D6_A43del(1)|p.E9_S47del(1)|p.Q28_Q61del(1)|p.A20_R151del(1)|p.A20_N141del(1)|p.D11_Y142>H(1)|p.H24_G38del(1)|p.S29_H36del(1)|p.Y30_A97del(1)|p.A20_A80del(1)|p.Q28_A43del(1)|p.E15_I140>V(1)|p.D17_P128del(1)|p.H24_M131del(1)|p.L7_I140del(1)|p.K19_Y142>V(1)|p.A20_L148del(1)|p.V22_A80del(1)|p.W25_I35del(1)|p.V22_G80>NNNNN(1)|p.GIHS34?(1)|p.A5_I35del(1)|p.A20_Q143del(1)|p.A13_R151del(1)|p.S23_I140del(1)|p.M1_A87del(1)|p.V22_T102del(1)|p.S33_G34del(1)|p.S23_A39del(1)|p.A21_A80del(1)|p.D6_I140del(1)|p.Q28_I140del(1)|p.E9_A80del(1)|p.G34_S37del(1)|p.M14_S45del(1)|p.M8_G50del(1)|p.A5_G80>(1)|p.D32_H36>D(1)|p.S33_G34insGTS(1)|p.P16_K133del(1)|p.A5_T59del(1)|p.A20_I35del(1)|p.M1_V173del(1)|p.A5_R90del(1)|p.V22_Y64del(1)|p.M8_A80del(1)|p.S33_S37del(1)|p.E9_I140del(1)|p.S33_G34insS(1)|p.Y30_T40del(1)|p.S33_G34insGI(1)|p.M1_T42del(1)|p.A5_Q143>E(1)|p.A5_Q72del(1)|p.Y30_A80del(1)|p.D32fs*9(1)|p.D6_K133del(1)|p.A5_T42del(1)|p.A5_D144>D(1)|p.A5_T40del(1)|p.D17_A126del(1)|p.A5_E54del(1)|p.S23_I35del(1)|p.V22_S71>A(1)|p.W25_A80del(1)|p.A20_Q72del(1)|p.A20_S111del(1)|p.D32_H36del(1)	CTNNB1/PLAG1(60)	liver(806)|soft_tissue(609)|large_intestine(243)|endometrium(222)|kidney(172)|stomach(157)|central_nervous_system(139)|ovary(104)|skin(97)|pancreas(91)|adrenal_gland(85)|pituitary(81)|salivary_gland(62)|haematopoietic_and_lymphoid_tissue(57)|thyroid(55)|biliary_tract(41)|lung(38)|prostate(24)|bone(20)|small_intestine(17)|cervix(9)|parathyroid(9)|urinary_tract(8)|breast(7)|oesophagus(5)|NS(3)|pleura(2)|upper_aerodigestive_tract(2)|eye(1)	3166				KIRC - Kidney renal clear cell carcinoma(284;0.0028)|Kidney(284;0.00294)	Lithium(DB01356)	CTGGACTCTGGAATCCATTCT	0.488	G34E(AGS_STOMACH)	15	H|Mis|T	PLAG1	colorectal|cvarian| hepatoblastoma|others|pleomorphic salivary adenoma				Pilomatrixoma_Familial_Clustering_of				7	32					0	0	0.003080	0	0
LYZL4	131375	broad.mit.edu	37	3	42448470	42448470	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:42448470C>T	uc003cle.2	-	3	409	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NM_144634	NP_653235	Q96KX0	LYZL4_HUMAN	lysozyme-like 4 precursor	54		By similarity.			cell wall macromolecule catabolic process	extracellular region	lysozyme activity			central_nervous_system(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.222)		AACTTGCTCTCGAAGTAGGCC	0.572													6	29					0	0	0.001984	0	0
MAP4	4134	broad.mit.edu	37	3	47896788	47896788	+	Missense_Mutation	SNP	C	T	T	rs148356137		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:47896788C>T	uc003csb.2	-	17	3737	c.3211G>A	c.(3211-3213)GTG>ATG	p.V1071M	MAP4_uc003csc.3_Missense_Mutation_p.V1071M|MAP4_uc003crw.2_Missense_Mutation_p.V150M|MAP4_uc003crx.2_Missense_Mutation_p.V247M|MAP4_uc011bbe.1_Missense_Mutation_p.V784M|MAP4_uc003cry.2_Missense_Mutation_p.V806M|MAP4_uc003csa.3_Missense_Mutation_p.V737M|MAP4_uc003crz.3_RNA	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	1071	Tau/MAP 4.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		AGGGATCCCACCTTGGCCTGG	0.557													21	111					0	0	0.004656	0	0
PLXNB1	5364	broad.mit.edu	37	3	48454244	48454245	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:48454244_48454245CC>TT	uc003csw.2	-	25	5030_5031	c.4760_4761GG>AA	c.(4759-4761)CGG>CAA	p.R1587Q	PLXNB1_uc003cst.2_Missense_Mutation_p.R37Q|PLXNB1_uc003csu.2_Missense_Mutation_p.R1404Q|PLXNB1_uc003csx.2_Missense_Mutation_p.R1587Q	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1587	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CACCCAGGTCCCGGTGCAAGGG	0.629													7	39					0	0	0.004672	0	0
CELSR3	1951	broad.mit.edu	37	3	48664104	48664104	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:48664104G>A	uc003cuf.1	-	54	12246	c.12246C>T	c.(12244-12246)TTC>TTT	p.F4082F	SLC26A6_uc003cug.2_Silent_p.F675F|SLC26A6_uc003cuh.2_Silent_p.F696F|SLC26A6_uc010hke.2_Silent_p.F528F|SLC26A6_uc003cuk.2_Silent_p.F588F|SLC26A6_uc003cui.2_Silent_p.F695F|SLC26A6_uc003cuj.2_Silent_p.F677F|SLC26A6_uc011bbp.1_Silent_p.F660F	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAATCTCCCGGAAGTCATGGA	0.597													34	147					0	0	0.006230	0	0
CELSR3	1951	broad.mit.edu	37	3	48677785	48677785	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:48677785C>T	uc003cul.2	-	34	9514	c.9233G>A	c.(9232-9234)CGG>CAG	p.R3078Q	CELSR3_uc003cuf.1_Missense_Mutation_p.R3176Q|CELSR3_uc010hkf.2_Missense_Mutation_p.R368Q|CELSR3_uc010hkg.2_Missense_Mutation_p.R1061Q	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3078	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCTCAGTTGCCGCCGGAGGAG	0.647													20	127					0	0	0.007413	0	0
RASSF1	11186	broad.mit.edu	37	3	50368147	50368147	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:50368147G>A	uc003dad.1	-	6	1031	c.900C>T	c.(898-900)TTC>TTT	p.F300F	TUSC2_uc003czy.1_5'Flank|TUSC2_uc003czz.1_5'Flank|RASSF1_uc003daa.1_Silent_p.F145F|RASSF1_uc003dab.1_Silent_p.F226F|RASSF1_uc003dac.2_Silent_p.F145F|RASSF1_uc003dae.1_Silent_p.F296F|RASSF1_uc010hlk.1_RNA|RASSF1_uc003daf.1_Silent_p.F145F	NM_170714	NP_733832	Q9NS23	RASF1_HUMAN	Ras association domain family 1 isoform D	300	SARAH.				cell cycle arrest|negative regulation of cell cycle arrest|positive regulation of protein ubiquitination|protein stabilization|Ras protein signal transduction|response to DNA damage stimulus	microtubule|microtubule cytoskeleton|microtubule organizing center|nucleus|spindle pole	identical protein binding|protein binding|protein N-terminus binding|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000278)|OV - Ovarian serous cystadenocarcinoma(275;0.0015)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CAGGCATGCTGAAGGCGTCCC	0.572													11	57					0	0	0.008291	0	0
VPRBP	9730	broad.mit.edu	37	3	51517738	51517738	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:51517738G>A	uc003dbe.1	-	3	275	c.107C>T	c.(106-108)ACC>ATC	p.T36I	VPRBP_uc003dbg.1_Missense_Mutation_p.T36I	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	36					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		TTCATACCTGGTAAGGATAGG	0.373													21	80					0	0	0.014323	0	0
STAB1	23166	broad.mit.edu	37	3	52541961	52541961	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:52541961G>A	uc003dej.2	+	20	2141	c.2067G>A	c.(2065-2067)AAG>AAA	p.K689K	STAB1_uc003dei.1_Silent_p.K689K	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	689	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCTTCCCCAAGGAGTGTGTCT	0.577													14	68					0	0	0.004990	0	0
CACNA1D	776	broad.mit.edu	37	3	53844086	53844087	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:53844086_53844087CC>TT	uc003dgv.3	+	47	6116_6117	c.5953_5954CC>TT	c.(5953-5955)CCA>TTA	p.P1985L	CACNA1D_uc003dgu.3_Missense_Mutation_p.P2005L|CACNA1D_uc003dgy.3_Missense_Mutation_p.P1961L|CACNA1D_uc003dgw.3_Missense_Mutation_p.P1652L|CACNA1D_uc011bes.1_RNA	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1985	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GGCCACCCCTCCAGCAACCCCT	0.624													12	60					0	0	0.004672	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54930880	54930880	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:54930880C>T	uc003dhf.2	+	26	2399	c.2351C>T	c.(2350-2352)TCG>TTG	p.S784L	CACNA2D3_uc003dhg.1_Missense_Mutation_p.S690L|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	784	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTCGTCTACTCGATCCCATTC	0.567													11	97					0	0	0.001855	0	0
THOC7	80145	broad.mit.edu	37	3	63825450	63825450	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:63825450C>T	uc003dlt.3	-	2	151	c.20_splice	c.e2-1	p.D7_splice	C3orf49_uc003dls.3_Intron|THOC7_uc003dlu.3_Intron	NM_025075	NP_079351	Q6I9Y2	THOC7_HUMAN	Ngg1 interacting factor 3 like 1 binding protein						intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	cytoplasm|THO complex part of transcription export complex	protein binding|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.000439)|Kidney(15;0.00194)|KIRC - Kidney renal clear cell carcinoma(15;0.00218)		ATAACTTCGTCTGCAGGAAAG	0.388													3	31					0	0	0.009096	0	0
MAGI1	9223	broad.mit.edu	37	3	65415693	65415693	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:65415693G>A	uc003dmn.2	-	12	2195	c.1669C>T	c.(1669-1671)CCA>TCA	p.P557S	MAGI1_uc003dmm.2_Missense_Mutation_p.P557S|MAGI1_uc003dmo.2_Missense_Mutation_p.P557S|MAGI1_uc003dmp.2_Missense_Mutation_p.P557S|MAGI1_uc010hny.2_Missense_Mutation_p.P442S	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	557					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		AAAGGCAATGGATAACCTCGG	0.463													10	49					0	0	0.008291	0	0
DHFRL1	200895	broad.mit.edu	37	3	93780104	93780104	+	Silent	SNP	T	A	A	rs148600595		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:93780104T>A	uc003dri.2	-	2	418	c.252A>T	c.(250-252)CCA>CCT	p.P84P	DHFRL1_uc003drj.2_Silent_p.P84P|NSUN3_uc003drk.2_5'Flank|NSUN3_uc003drl.1_5'Flank	NM_176815	NP_789785	Q86XF0	DYRL1_HUMAN	dihydrofolate reductase-like 1	84	DHFR.				glycine biosynthetic process|nucleotide biosynthetic process|one-carbon metabolic process		dihydrofolate reductase activity|NADP binding				0						GAGCTCCTTGTGGAGGTTCCT	0.393													23	74					0	0	0.012319	0	0
OR5H15	403274	broad.mit.edu	37	3	97888366	97888366	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:97888366C>G	uc011bgu.1	+	1	823	c.823C>G	c.(823-825)CCT>GCT	p.P275A		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TATGGTGGAGCCTCTATTCTA	0.393													8	49					0	0	0.003080	0	0
OR5K1	26339	broad.mit.edu	37	3	98189104	98189104	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:98189104G>A	uc003dsm.2	+	1	684	c.684G>A	c.(682-684)ATG>ATA	p.M228I		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTTTCAAAATGAAATCCAAAG	0.348													5	48					0	0	0.000602	0	0
FAM55C	91775	broad.mit.edu	37	3	101520777	101520777	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:101520777C>T	uc003dvn.2	+	5	1429	c.792C>T	c.(790-792)TTC>TTT	p.F264F	FAM55C_uc010hpn.2_Silent_p.F264F	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	264						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						TTACCCATTTCAAAGGTGGAT	0.473													13	93					0	0	0.003163	0	0
MYH15	22989	broad.mit.edu	37	3	108178266	108178266	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:108178266T>A	uc003dxa.1	-	19	2080	c.2023A>T	c.(2023-2025)AAA>TAA	p.K675*		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	675	Myosin head-like.|Actin-binding (By similarity).					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTGTTGATTTCAGATTAGTC	0.323													10	42					0	0	0.010729	0	0
CCDC52	152185	broad.mit.edu	37	3	113175994	113175994	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:113175994G>A	uc003eag.3	-	13	1937	c.1646C>T	c.(1645-1647)CCT>CTT	p.P549L	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.P445L	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	549					cell division|mitosis	centriole|spindle	protein binding				0						GTCCTGAAGAGGAGAGAATTT	0.363													7	24					0	0	0.003080	0	0
SIDT1	54847	broad.mit.edu	37	3	113330992	113330992	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:113330992C>T	uc003eak.2	+	19	2568	c.1917C>T	c.(1915-1917)GCC>GCT	p.A639A	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Silent_p.A639A|SIDT1_uc011big.1_Silent_p.A392A|SIDT1_uc011bih.1_RNA|SIDT1_uc011bii.1_Silent_p.A92A	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	639	Helical; (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						ACGTTCTGGCCTCGCTAGCCC	0.413													18	72					0	0	0.012319	0	0
STXBP5L	9515	broad.mit.edu	37	3	120957827	120957827	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:120957827C>T	uc003eec.3	+	13	1334	c.1194C>T	c.(1192-1194)ATC>ATT	p.I398I	STXBP5L_uc011bji.1_Silent_p.I398I	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	398					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GTTTTCCAATCTTTGAAAATC	0.308													4	24					0	0	0.009096	0	0
STXBP5L	9515	broad.mit.edu	37	3	120973939	120973939	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:120973939G>A	uc003eec.3	+	16	1779	c.1639G>A	c.(1639-1641)GAA>AAA	p.E547K	STXBP5L_uc011bji.1_Missense_Mutation_p.E547K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	547	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CAGCAGACATGAAATTACAAC	0.308													6	24					0	0	0.001168	0	0
HCLS1	3059	broad.mit.edu	37	3	121350951	121350951	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:121350951C>T	uc003eeh.3	-	13	1446	c.1321G>A	c.(1321-1323)GGA>AGA	p.G441R	HCLS1_uc011bjj.1_Missense_Mutation_p.G404R	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	441	SH3.				erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		AACCTACCTCCTTGGTAATCA	0.428													18	131					0	0	0.006122	0	0
MUC13	56667	broad.mit.edu	37	3	124642407	124642407	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:124642407C>T	uc003ehq.1	-	3	625	c.601G>A	c.(601-603)GGG>AGG	p.G201R		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	201	EGF-like 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						TAGTAATACCCTTCTAAACAC	0.418													8	57					0	0	0.003080	0	0
TPRA1	131601	broad.mit.edu	37	3	127292431	127292431	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:127292431G>A	uc003ejl.2	-	10	1346	c.1055C>T	c.(1054-1056)TCC>TTC	p.S352F	TPRA1_uc003ejm.2_RNA|TPRA1_uc003ejo.2_Missense_Mutation_p.S352F|TPRA1_uc010hsk.2_3'UTR|TPRA1_uc003ejn.2_Missense_Mutation_p.S352F	NM_016372	NP_057456	Q86W33	TPRA1_HUMAN	G protein-coupled receptor 175 isoform 1	352					aging|lipid metabolic process	integral to membrane	G-protein coupled receptor activity				0						GCAGGGCATGGAAGCGATGTC	0.662													13	67					0	0	0.003163	0	0
NEK11	79858	broad.mit.edu	37	3	130947510	130947510	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:130947510C>T	uc003eny.2	+	15	1864	c.1538C>T	c.(1537-1539)CCT>CTT	p.P513L	NEK11_uc003eoa.2_Missense_Mutation_p.P513L|NEK11_uc003enz.2_Missense_Mutation_p.P331L|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Missense_Mutation_p.P329L|NEK11_uc011bll.1_Missense_Mutation_p.P408L	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	513					cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						GGATCCCAGCCTGCTTACAGA	0.448													9	43					0	0	0.006214	0	0
ZIC4	84107	broad.mit.edu	37	3	147113803	147113803	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:147113803C>A	uc003ewd.1	-	3	797	c.524G>T	c.(523-525)TGG>TTG	p.W175L	ZIC4_uc003ewc.1_Missense_Mutation_p.W105L|ZIC4_uc011bno.1_Missense_Mutation_p.W225L	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	175	C2H2-type 2; atypical.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						ACACTCCTCCCAGAAGCAAAT	0.577													10	210					1.76689e-08	1.82631e-08	0.006214	1	0
NMD3	51068	broad.mit.edu	37	3	160945082	160945082	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:160945082G>A	uc003feb.1	+	4	346	c.227G>A	c.(226-228)AGG>AAG	p.R76K	NMD3_uc003fec.2_Missense_Mutation_p.R76K|NMD3_uc003fed.1_Missense_Mutation_p.R76K	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	76					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			TTAGAATCCAGGGAACTTCTT	0.358													7	41					0	0	0.003080	0	0
ZBBX	79740	broad.mit.edu	37	3	167083673	167083673	+	Splice_Site	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:167083673C>T	uc003fep.2	-	6	596	c.273_splice	c.e6+1	p.K91_splice	ZBBX_uc011bpc.1_Splice_Site_p.K91_splice|ZBBX_uc003feq.2_Splice_Site_p.K62_splice	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing							intracellular	zinc ion binding			ovary(2)	2						TATCTTCTTACCTTAACAACA	0.303													9	26					0	0	0.006214	0	0
MYNN	55892	broad.mit.edu	37	3	169496554	169496554	+	Splice_Site	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:169496554A>T	uc003fft.2	+	3	696	c.267_splice	c.e3-2	p.S89_splice	MYNN_uc011bpm.1_Splice_Site|MYNN_uc003ffu.2_Splice_Site_p.S89_splice|MYNN_uc003ffv.2_Intron|MYNN_uc010hwo.2_Splice_Site_p.S89_splice|MYNN_uc003ffw.1_5'Flank	NM_018657	NP_061127	Q9NPC7	MYNN_HUMAN	myoneurin							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1	all_cancers(22;9.55e-22)|all_epithelial(15;2.04e-26)|all_lung(20;5.05e-16)|Lung NSC(18;2.19e-15)|Ovarian(172;0.000223)|Breast(254;0.197)		Epithelial(2;4.03e-64)|all cancers(2;2.19e-58)|Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.00676)			GTTTCCTTGCAGTTGGAATGT	0.343													27	117					0	0	0.004656	0	0
GHSR	2693	broad.mit.edu	37	3	172165494	172165494	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:172165494C>T	uc003fib.1	-	1	710	c.710G>A	c.(709-711)AGG>AAG	p.R237K	GHSR_uc011bpv.1_Missense_Mutation_p.R237K	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	237	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CCACAGCTTCCTGCCGATGAG	0.607													11	45					0	0	0.008291	0	0
SPATA16	83893	broad.mit.edu	37	3	172634193	172634193	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:172634193C>T	uc003fin.3	-	9	1575	c.1417G>A	c.(1417-1419)GAG>AAG	p.E473K		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	473					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			TGGGACTGCTCCTTTACTCTC	0.463													30	126					0	0	0.012213	0	0
TP63	8626	broad.mit.edu	37	3	189608638	189608638	+	Silent	SNP	C	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:189608638C>A	uc003fry.2	+	13	1802	c.1713C>A	c.(1711-1713)ACC>ACA	p.T571T	TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Silent_p.T477T|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Silent_p.T392T	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	571	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		AGGGGCTGACCACCATCTATC	0.438									Hay-Wells_syndrome	HNSCC(45;0.13)			4	65					0.00909568	0.00931861	0.009096	1	0
LEPREL1	55214	broad.mit.edu	37	3	189705396	189705396	+	Missense_Mutation	SNP	C	T	T	rs115909080	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:189705396C>T	uc011bsk.1	-	5	1406	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	LEPREL1_uc003fsg.2_Missense_Mutation_p.E159K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	340					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	AGGACATCCTCATCATCTGGA	0.463													14	53					0	0	0.004990	0	0
ATP13A4	84239	broad.mit.edu	37	3	193180552	193180552	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:193180552C>T	uc003ftd.2	-	13	1630	c.1522G>A	c.(1522-1524)GGC>AGC	p.G508S	ATP13A4_uc003fte.1_Missense_Mutation_p.G508S|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Missense_Mutation_p.G214S	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	508	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GGTACTCACCCATTCCTATCA	0.423													8	59					0	0	0.008291	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	Silent	SNP	A	G	G	rs12107841	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:195400728A>G	uc003fuw.2	+	9	1218	c.24A>G	c.(22-24)CCA>CCG	p.P8P	SDHAP2_uc011btb.1_Missense_Mutation_p.S156G|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						GATTGTGCCCAGCCTGTACGC	0.587													4	45					0	0	0.009096	0	0
ZDHHC19	131540	broad.mit.edu	37	3	195937578	195937578	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:195937578C>T	uc003fwc.2	-	2	291	c.177G>A	c.(175-177)TGG>TGA	p.W59*	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_Intron|ZDHHC19_uc010iab.2_RNA	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	59	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		CAGGAAAGGCCCACTCCCCGT	0.577													5	34					0	0	0.000602	0	0
UBXN7	26043	broad.mit.edu	37	3	196083650	196083650	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:196083650G>A	uc003fwm.3	-	11	1451	c.1376C>T	c.(1375-1377)CCT>CTT	p.P459L	UBXN7_uc003fwn.3_Missense_Mutation_p.P311L|UBXN7_uc010iae.2_Missense_Mutation_p.P297L	NM_015562	NP_056377	O94888	UBXN7_HUMAN	UBX domain containing 7	459	UBX.						protein binding			ovary(2)|pancreas(1)	3						TTTCCTTCGAGGAAAGTTGGT	0.393													9	32					0	0	0.004482	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6064089	6064089	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:6064089G>T	uc003giu.3	-	10	1786	c.1510C>A	c.(1510-1512)CTG>ATG	p.L504M	JAKMIP1_uc010idb.1_Missense_Mutation_p.L504M|JAKMIP1_uc010idc.1_Missense_Mutation_p.L319M|JAKMIP1_uc010idd.1_Intron|JAKMIP1_uc011bwc.1_Missense_Mutation_p.L339M|JAKMIP1_uc003giv.3_Missense_Mutation_p.L504M|JAKMIP1_uc010ide.2_Missense_Mutation_p.L504M	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	504	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TCCTGGAGCAGGGCGTAGGCG	0.667													11	79					9.70103e-10	1.00571e-09	0.008291	1	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338222	13338222	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:13338222C>T	uc003gms.2	+	1		c.3186C>T				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						AGGAGATTTTCCTTTGGGAGT	0.433													7	32					0	0	0.003080	0	0
BOD1L	259282	broad.mit.edu	37	4	13604424	13604424	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:13604424G>A	uc003gmz.1	-	10	4217	c.4100C>T	c.(4099-4101)CCA>CTA	p.P1367L	BOD1L_uc010idr.1_Missense_Mutation_p.P704L	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1367							DNA binding			ovary(5)|breast(1)	6						GTGAGCTTCTGGAATGTGTCT	0.413													19	82					0	0	0.008871	0	0
RFC1	5981	broad.mit.edu	37	4	39304170	39304170	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:39304170G>A	uc003gty.1	-	18	2523	c.2389C>T	c.(2389-2391)CCT>TCT	p.P797S	RFC1_uc003gtx.1_Missense_Mutation_p.P796S	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	797					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						ATAGCTGGAGGGGGAATCTTT	0.318													7	33					0	0	0.004482	0	0
ATP8A1	10396	broad.mit.edu	37	4	42457331	42457331	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:42457331G>A	uc003gwr.2	-	29	3032	c.2800C>T	c.(2800-2802)CTG>TTG	p.L934L	ATP8A1_uc003gwq.2_Silent_p.L160L|ATP8A1_uc003gws.2_Silent_p.L919L	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	934	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTGAAGTCCAGGGCATTCTGA	0.433													15	40					0	0	0.004990	0	0
GABRB1	2560	broad.mit.edu	37	4	47427981	47427981	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:47427981C>T	uc003gxh.2	+	9	1745	c.1371C>T	c.(1369-1371)TTC>TTT	p.F457F	GABRB1_uc011bze.1_Silent_p.F387F	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	457	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAATGTTTTTCCCCATCACCT	0.458													19	81					0	0	0.008871	0	0
KDR	3791	broad.mit.edu	37	4	55984850	55984850	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:55984850C>T	uc003has.2	-	3	581	c.279G>A	c.(277-279)GTG>GTA	p.V93V	KDR_uc003hat.1_Silent_p.V93V|KDR_uc011bzx.1_Silent_p.V93V	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	93	Ig-like C2-type 1.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CATTTCCGATCACTTTTGGAA	0.468			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			14	41					0	0	0.003163	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68964644	68964644	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:68964644C>T	uc003hdt.1	-	2	173	c.124G>A	c.(124-126)GGA>AGA	p.G42R		NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	42	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						ATTGCAATTCCTATGATTGCT	0.383													11	37					0	0	0.010729	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146345	70146345	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:70146345C>T	uc003hej.2	+	1	129	c.127C>T	c.(127-129)CTG>TTG	p.L43L	UGT2B28_uc010ihr.2_Silent_p.L43L	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	43					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GAAGACAATCCTGAAAGAGCT	0.448													24	57					0	0	0.003954	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146450	70146450	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:70146450C>T	uc003hej.2	+	1	234	c.232C>T	c.(232-234)CCT>TCT	p.P78S	UGT2B28_uc010ihr.2_Missense_Mutation_p.P78S	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	78					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	CGAAGTTTATCCTACATCTTT	0.363													16	46					0	0	0.003163	0	0
NPFFR2	10886	broad.mit.edu	37	4	73013347	73013347	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:73013347G>A	uc003hgg.2	+	4	1485	c.1387G>A	c.(1387-1389)GAA>AAA	p.E463K	NPFFR2_uc010iig.1_Missense_Mutation_p.E245K|NPFFR2_uc003hgi.2_Missense_Mutation_p.E364K|NPFFR2_uc003hgh.2_Missense_Mutation_p.E361K|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	463	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			AAAGCCTATGGAAGCTTATGC	0.433													19	74					0	0	0.007413	0	0
CXCL6	6372	broad.mit.edu	37	4	74702545	74702545	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:74702545C>T	uc003hhf.2	+	1	273	c.78C>T	c.(76-78)CTC>CTT	p.L26L	IL8_uc011cbh.1_Intron	NM_002993	NP_002984	P80162	CXCL6_HUMAN	chemokine (C-X-C motif) ligand 6 (granulocyte	26					cell-cell signaling|chemotaxis|immune response|inflammatory response|signal transduction	extracellular space	chemokine activity|heparin binding				0	Breast(15;0.00102)		all cancers(17;0.00176)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			CGCTGCTGCTCCTGCTGACGC	0.721													7	23					0	0	0.001984	0	0
SDAD1	55153	broad.mit.edu	37	4	76879014	76879014	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:76879014C>T	uc003hje.3	-	18	1683	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	SDAD1_uc003hjf.3_Missense_Mutation_p.E425K|SDAD1_uc011cbr.1_Missense_Mutation_p.E485K	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	522					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCTTGCTGTTCTTCATCGGAA	0.408													50	203					0	0	0.014410	0	0
CCDC158	339965	broad.mit.edu	37	4	77324294	77324294	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:77324294C>T	uc003hkb.3	-	2	220	c.67G>A	c.(67-69)GGA>AGA	p.G23R	CCDC158_uc003hkd.2_Missense_Mutation_p.G23R	NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	23										skin(3)|ovary(2)|pancreas(1)	6						CACATACCTCCATTAGATGTG	0.294													10	23					0	0	0.008291	0	0
SHROOM3	57619	broad.mit.edu	37	4	77699981	77699981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:77699981G>A	uc011cbx.1	+	11	6595	c.5642G>A	c.(5641-5643)AGG>AAG	p.R1881K	SHROOM3_uc003hkg.2_Missense_Mutation_p.R1659K	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1881	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TACGAGAAAAGGAAGATCCTG	0.537													9	41					0	0	0.006214	0	0
FRAS1	80144	broad.mit.edu	37	4	79236774	79236774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:79236774G>A	uc003hlb.2	+	16	2145	c.1705G>A	c.(1705-1707)GGC>AGC	p.G569S	FRAS1_uc003hkw.2_Missense_Mutation_p.G569S|FRAS1_uc003hky.1_Missense_Mutation_p.G273S|FRAS1_uc003hkz.2_Missense_Mutation_p.G273S|FRAS1_uc003hla.1_Missense_Mutation_p.G80S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	569	FU 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGACAGTTGTGGCCCCAGTAG	0.488													21	114					0	0	0.014323	0	0
NAA11	84779	broad.mit.edu	37	4	80246900	80246900	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:80246900G>A	uc003hlt.3	-	1	272	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	44	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						CATCCTCAGCGATGTAAGAAA	0.488													16	91					0	0	0.004990	0	0
WDFY3	23001	broad.mit.edu	37	4	85752612	85752612	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:85752612G>A	uc003hpd.2	-	8	1131	c.723C>T	c.(721-723)ACC>ACT	p.T241T	WDFY3_uc003hpf.2_Silent_p.T241T	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	241						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GACGAGATATGGTCATGAGGA	0.388													19	83					0	0	0.012319	0	0
GRID2	2895	broad.mit.edu	37	4	94436427	94436427	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:94436427G>A	uc011cdt.1	+	13	2316	c.2058G>A	c.(2056-2058)GCG>GCA	p.A686A	GRID2_uc011cdu.1_Silent_p.A591A	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	686	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TAGACTCTGCGGTATATGAGC	0.468													7	35					0	0	0.003080	0	0
CENPE	1062	broad.mit.edu	37	4	104067143	104067143	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:104067143A>G	uc003hxb.1	-	30	4346	c.4256T>C	c.(4255-4257)ATA>ACA	p.I1419T	CENPE_uc003hxc.1_Missense_Mutation_p.I1394T	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1419	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		TTCTATTTCTATCCTTAGTAG	0.368													11	93					0	0	0.002450	0	0
TACR3	6870	broad.mit.edu	37	4	104640404	104640404	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:104640404G>A	uc003hxe.1	-	1	572	c.429C>T	c.(427-429)TTC>TTT	p.F143F		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	143	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GCGCGTAGATGAAATTGACCA	0.532													11	33					0	0	0.001855	0	0
DKK2	27123	broad.mit.edu	37	4	107845316	107845316	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:107845316C>T	uc003hyi.2	-	4	1280	c.575G>A	c.(574-576)GGG>GAG	p.G192E	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	192	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		ACAGCAAAACCCTTCAATGCA	0.473													11	56					0	0	0.008291	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948278	119948278	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:119948278C>T	uc003icm.3	+	3	950	c.754C>T	c.(754-756)CCT>TCT	p.P252S	SYNPO2_uc010ina.2_Missense_Mutation_p.P252S|SYNPO2_uc010inb.2_Missense_Mutation_p.P252S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.P180S	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	252						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						GAAAGCAGACCCTTTCCTGAG	0.507													4	44					0	0	0.009096	0	0
SYNPO2	171024	broad.mit.edu	37	4	119951534	119951534	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:119951534C>T	uc003icm.3	+	4	1800	c.1604C>T	c.(1603-1605)TCT>TTT	p.S535F	SYNPO2_uc010ina.2_Missense_Mutation_p.S535F|SYNPO2_uc010inb.2_Missense_Mutation_p.S535F|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.S463F	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	535						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						ACCACGACTTCTTACCAAAGA	0.502													10	33					0	0	0.008291	0	0
C4orf31	79625	broad.mit.edu	37	4	121957872	121957872	+	Silent	SNP	G	A	A	rs148977529	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:121957872G>A	uc003idq.1	-	4	1781	c.1254C>T	c.(1252-1254)CTC>CTT	p.L418L		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	418											0						TCAGTCGAACGAGGTATTTAG	0.418													30	90					0	0	0.008361	0	0
ADAD1	132612	broad.mit.edu	37	4	123317448	123317448	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:123317448A>T	uc003ieo.2	+	7	872	c.640A>T	c.(640-642)AAA>TAA	p.K214*	ADAD1_uc003iep.2_Nonsense_Mutation_p.K214*|ADAD1_uc003ieq.2_Nonsense_Mutation_p.K196*	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	214					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						ACAGATCGTTAAAGAAAGATT	0.308													7	23					0	0	0.003080	0	0
FAT4	79633	broad.mit.edu	37	4	126242301	126242301	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:126242301C>T	uc003ifj.3	+	1	4735	c.4735C>T	c.(4735-4737)CGT>TGT	p.R1579C		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1579	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CATTGTTGATCGTTATAGTGG	0.458													22	118					0	0	0.014323	0	0
FAT4	79633	broad.mit.edu	37	4	126371171	126371171	+	Silent	SNP	G	A	A	rs142357260		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:126371171G>A	uc003ifj.3	+	9	9000	c.9000G>A	c.(8998-9000)ACG>ACA	p.T3000T	FAT4_uc011cgp.1_Silent_p.T1298T|FAT4_uc003ifi.1_Silent_p.T478T	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3000	Extracellular (Potential).|Cadherin 29.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGTTGGTACGAAGTTAATCA	0.318													7	46					0	0	0.001984	0	0
FAT4	79633	broad.mit.edu	37	4	126371291	126371291	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:126371291G>A	uc003ifj.3	+	9	9120	c.9120G>A	c.(9118-9120)TGG>TGA	p.W3040*	FAT4_uc011cgp.1_Nonsense_Mutation_p.W1338*|FAT4_uc003ifi.1_Nonsense_Mutation_p.W518*	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3040	Extracellular (Potential).|Cadherin 29.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATACGGGGTGGATTTCAGTAG	0.373													7	37					0	0	0.003080	0	0
LARP1B	55132	broad.mit.edu	37	4	129035873	129035873	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:129035873T>C	uc003iga.2	+	10	1268	c.1137T>C	c.(1135-1137)CAT>CAC	p.H379H	LARP1B_uc003ifz.1_Silent_p.H379H|LARP1B_uc003igb.1_Silent_p.H94H	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	379							RNA binding				0						AAAAAAGACATCAGCCAGCCC	0.413													7	47					0	0	0.001984	0	0
SCLT1	132320	broad.mit.edu	37	4	129867241	129867241	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:129867241G>A	uc003igp.2	-	16	1866	c.1360C>T	c.(1360-1362)CTG>TTG	p.L454L	SCLT1_uc003ign.2_Silent_p.L118L|SCLT1_uc003igo.2_Silent_p.L64L|SCLT1_uc003igq.2_Intron|SCLT1_uc010iob.1_Intron	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	454	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						TCTGAAACCAGGAATCTTTGG	0.348													6	18					0	0	0.001168	0	0
PCDH18	54510	broad.mit.edu	37	4	138451643	138451643	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:138451643C>T	uc003ihe.3	-	1	1987	c.1600G>A	c.(1600-1602)GAT>AAT	p.D534N	PCDH18_uc003ihf.3_Missense_Mutation_p.D527N|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.D314N|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	534	Extracellular (Potential).|Cadherin 5.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCTTCATGATCAAAGATTCTG	0.423													12	87					0	0	0.002450	0	0
CLGN	1047	broad.mit.edu	37	4	141317270	141317270	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:141317270G>A	uc011chi.1	-	10	1192	c.974C>T	c.(973-975)CCT>CTT	p.P325L	CLGN_uc003iii.2_Missense_Mutation_p.P325L	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	325	Lumenal (Potential).|1-4.				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					TTCAGCATTAGGATCAGGGAT	0.363													15	113					0	0	0.003163	0	0
INPP4B	8821	broad.mit.edu	37	4	143235912	143235912	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:143235912G>A	uc003iix.3	-	9	971	c.376C>T	c.(376-378)CGA>TGA	p.R126*	INPP4B_uc003iiw.3_Nonsense_Mutation_p.R126*|INPP4B_uc011chm.1_RNA|INPP4B_uc011cho.1_RNA	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	126	C2.				signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					ACACTGGTTCGAACCTGTGGA	0.448													35	115					0	0	0.006999	0	0
INPP4B	8821	broad.mit.edu	37	4	143350350	143350350	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:143350350C>T	uc003iix.3	-	6	707	c.112G>A	c.(112-114)GAA>AAA	p.E38K	INPP4B_uc003iiw.3_Missense_Mutation_p.E38K|INPP4B_uc011chm.1_RNA|INPP4B_uc011cho.1_RNA|INPP4B_uc003iiz.2_RNA	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	38	C2.				signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					AACTGCGGTTCATTTGGAGTC	0.274													3	9					0	0	0.009096	0	0
HHIP	64399	broad.mit.edu	37	4	145628247	145628247	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:145628247C>T	uc003ijs.1	+	6	1647	c.992C>T	c.(991-993)CCA>CTA	p.P331L		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	331						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		AGAAAAAATCCACACCAAGTT	0.383													7	23					0	0	0.004482	0	0
FGA	2243	broad.mit.edu	37	4	155505387	155505387	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:155505387C>T	uc003iod.1	-	6	2548	c.2490G>A	c.(2488-2490)AGG>AGA	p.R830R		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	830	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	GACTGTTATTCCTTGGGTCAT	0.488													27	102					0	0	0.005443	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634625	156634625	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:156634625G>A	uc003iov.2	+	8	1998	c.1462G>A	c.(1462-1464)GTT>ATT	p.V488I	GUCY1A3_uc010iqc.2_Missense_Mutation_p.V488I|GUCY1A3_uc003iow.2_Missense_Mutation_p.V488I|GUCY1A3_uc010iqd.2_Missense_Mutation_p.V487I|GUCY1A3_uc003iox.2_Missense_Mutation_p.V488I|GUCY1A3_uc003ioz.2_Missense_Mutation_p.V253I|GUCY1A3_uc003ioy.2_Missense_Mutation_p.V488I|GUCY1A3_uc010iqe.2_Missense_Mutation_p.V253I|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.V488I	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	488	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTCAGACATCGTTGGGTTCAC	0.537													11	52					0	0	0.013537	0	0
TRIM60	166655	broad.mit.edu	37	4	165962409	165962409	+	Silent	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:165962409T>G	uc003iqy.1	+	3	1355	c.1185T>G	c.(1183-1185)GGT>GGG	p.G395G	TRIM60_uc010iqx.1_Silent_p.G395G	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	395	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		TGAAGAGTGGTTATGTTGCGT	0.453													13	84					0	0	0.002450	0	0
PALLD	23022	broad.mit.edu	37	4	169433032	169433032	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:169433032C>T	uc011cjx.1	+	2	588	c.377C>T	c.(376-378)CCC>CTC	p.P126L	PALLD_uc003iru.2_Missense_Mutation_p.P126L	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	126					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		GCCATGTCACCCCTGCTCACC	0.512									Pancreatic_Cancer_Familial_Clustering_of				8	49					0	0	0.004482	0	0
GALNTL6	442117	broad.mit.edu	37	4	173942764	173942764	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:173942764G>A	uc003isv.2	+	12	2362	c.1626G>A	c.(1624-1626)TGG>TGA	p.W542*		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	542	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						ACCAGCTCTGGGGATACCGGA	0.448													25	116					0	0	0.008361	0	0
ODZ3	55714	broad.mit.edu	37	4	183675559	183675559	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:183675559G>A	uc003ivd.1	+	21	4076	c.4039G>A	c.(4039-4041)GAC>AAC	p.D1347N	ODZ3_uc003ive.1_Missense_Mutation_p.D760N	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1347	Extracellular (Potential).|NHL 3.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ATGGCCCACTGACCTAGCCAT	0.398													6	14					0	0	0.001168	0	0
ODZ3	55714	broad.mit.edu	37	4	183675993	183675993	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr4:183675993G>A	uc003ivd.1	+	21	4510	c.4473G>A	c.(4471-4473)GGG>GGA	p.G1491G	ODZ3_uc003ive.1_Silent_p.G904G	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1491	Extracellular (Potential).|NHL 5.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGATCTAGGGAATATCCGGA	0.468													13	62					0	0	0.004007	0	0
CEP72	55722	broad.mit.edu	37	5	640714	640714	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:640714G>A	uc003jbf.2	+	9	1606	c.1534G>A	c.(1534-1536)GAG>AAG	p.E512K		NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	512	Potential.				G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			CACACACAAGGAGCTGGTGAG	0.622													4	33					0	0	0.009096	0	0
ZDHHC11	79844	broad.mit.edu	37	5	843743	843743	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:843743C>T	uc011cma.1	-	4	984	c.600G>A	c.(598-600)GGG>GGA	p.G200G	ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_5'Flank|ZDHHC11_uc003jbk.2_5'UTR	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	200						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			TGCGGAGCACCCCGGGGTTCA	0.632													13	131					0	0	0.002450	0	0
LPCAT1	79888	broad.mit.edu	37	5	1494858	1494858	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:1494858G>A	uc003jcm.2	-	3	567	c.450C>T	c.(448-450)TCC>TCT	p.S150S		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	150	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TCATCACGATGGAGGACATCG	0.632													13	63					0	0	0.002450	0	0
DNAH5	1767	broad.mit.edu	37	5	13721267	13721267	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:13721267G>A	uc003jfd.2	-	71	12163	c.12121C>T	c.(12121-12123)CCA>TCA	p.P4041S	DNAH5_uc003jfc.2_Missense_Mutation_p.P209S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4041	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGCGTCCGTGGATCAGATTCC	0.483									Kartagener_syndrome				19	82					0	0	0.012319	0	0
DNAH5	1767	broad.mit.edu	37	5	13868074	13868074	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:13868074C>T	uc003jfd.2	-	25	3904	c.3862G>A	c.(3862-3864)GGA>AGA	p.G1288R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1288	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATCAGAAGTCCATATCTGTTA	0.388									Kartagener_syndrome				12	28					0	0	0.010729	0	0
DNAH5	1767	broad.mit.edu	37	5	13885104	13885104	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:13885104A>C	uc003jfd.2	-	19	3019	c.2977T>G	c.(2977-2979)TTC>GTC	p.F993V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	993	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTACCCCGGAAGTTAATTGTG	0.363									Kartagener_syndrome				16	66					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13931219	13931219	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:13931219C>T	uc003jfd.2	-	2	234	c.192G>A	c.(190-192)CAG>CAA	p.Q64Q	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	64	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CGCATCCCACCTGATTCCCTT	0.502									Kartagener_syndrome				5	54					0	0	0.001984	0	0
CDH12	1010	broad.mit.edu	37	5	21765107	21765107	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:21765107C>T	uc010iuc.2	-	9	1953	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	CDH12_uc011cno.1_Missense_Mutation_p.E459K|CDH12_uc003jgk.2_Missense_Mutation_p.E499K|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	499	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTGGCATTTTCACACACGGCT	0.353										HNSCC(59;0.17)			10	71					0	0	0.008291	0	0
CDH9	1007	broad.mit.edu	37	5	26881640	26881640	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:26881640A>G	uc003jgs.1	-	12	2144	c.1975T>C	c.(1975-1977)TAC>CAC	p.Y659H	CDH9_uc011cnv.1_Missense_Mutation_p.Y252H	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	659	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TCATCGTTGTAGGTCACAATG	0.423													19	130					0	0	0.010504	0	0
PDZD2	23037	broad.mit.edu	37	5	31983668	31983668	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:31983668C>T	uc003jhl.2	+	3	1272	c.884C>T	c.(883-885)CCA>CTA	p.P295L	PDZD2_uc003jhm.2_Missense_Mutation_p.P295L|PDZD2_uc011cnx.1_Missense_Mutation_p.P121L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	295					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CATAGAATTCCAAAGACAGAT	0.517													35	108					0	0	0.005524	0	0
PDZD2	23037	broad.mit.edu	37	5	32053928	32053928	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:32053928G>A	uc003jhl.2	+	10	2227	c.1839G>A	c.(1837-1839)GGG>GGA	p.G613G	PDZD2_uc003jhm.2_Silent_p.G613G|PDZD2_uc011cnx.1_Silent_p.G439G	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	613	PDZ 3.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GACAGATGGGGATTTTTGTCA	0.478													24	135					0	0	0.008361	0	0
PDZD2	23037	broad.mit.edu	37	5	32074338	32074338	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:32074338G>A	uc003jhl.2	+	18	3514	c.3126G>A	c.(3124-3126)GAG>GAA	p.E1042E	PDZD2_uc003jhm.2_Silent_p.E1042E|PDZD2_uc011cnx.1_Silent_p.E868E	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1042					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TGGACTTAGAGGAGAGTATCC	0.592													26	83					0	0	0.003954	0	0
PDZD2	23037	broad.mit.edu	37	5	32091151	32091151	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:32091151G>A	uc003jhl.2	+	20	7985	c.7597G>A	c.(7597-7599)GAG>AAG	p.E2533K	PDZD2_uc003jhm.2_Missense_Mutation_p.E2533K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2533					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						TTCGTGTCCCGAGAAGGGCGG	0.617													10	51					0	0	0.010729	0	0
NUP155	9631	broad.mit.edu	37	5	37342727	37342727	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:37342727A>G	uc003jku.1	-	10	1135	c.1017T>C	c.(1015-1017)TTT>TTC	p.F339F	NUP155_uc003jkt.1_Silent_p.F280F|NUP155_uc010iuz.1_Silent_p.F339F	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	339					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAATTGGTTTAAAAACAGAAC	0.313													7	25					0	0	0.001984	0	0
EGFLAM	133584	broad.mit.edu	37	5	38418357	38418357	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:38418357G>A	uc003jlc.1	+	12	2008	c.1684G>A	c.(1684-1686)GGG>AGG	p.G562R	EGFLAM_uc003jlb.1_Missense_Mutation_p.G562R|EGFLAM_uc003jle.1_Missense_Mutation_p.G328R|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	562	Laminin G-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGCTGATGTGGGTAAGTGGCT	0.567													6	28					0	0	0.001168	0	0
OSMR	9180	broad.mit.edu	37	5	38881746	38881746	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:38881746G>A	uc003jln.1	+	4	665	c.298G>A	c.(298-300)GAA>AAA	p.E100K	OSMR_uc003jlm.1_Missense_Mutation_p.E100K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	100	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TTGGAGCTGGGAATCTGAGCT	0.458													15	81					0	0	0.003163	0	0
DAB2	1601	broad.mit.edu	37	5	39377003	39377003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:39377003G>A	uc003jlx.2	-	12	2417	c.1886C>T	c.(1885-1887)CCC>CTC	p.P629L	DAB2_uc003jlw.2_Missense_Mutation_p.P608L	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	629					cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			GATGTCCTTGGGAGGGCCAGC	0.527											OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	123					0	0	0.005443	0	0
GHR	2690	broad.mit.edu	37	5	42719299	42719299	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:42719299G>A	uc003jmt.2	+	10	1733	c.1690G>A	c.(1690-1692)GAC>AAC	p.D564N	GHR_uc011cpq.1_Missense_Mutation_p.D377N	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	564	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAACCAAGAGGACATTTACAT	0.502													3	19					0	0	0.004672	0	0
HCN1	348980	broad.mit.edu	37	5	45262128	45262128	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:45262128G>A	uc003jok.2	-	8	2593	c.2568C>T	c.(2566-2568)GTC>GTT	p.V856V		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	856	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GTGCTGGAGGGACTCCTCGGT	0.602													21	97					0	0	0.004656	0	0
ITGA2	3673	broad.mit.edu	37	5	52371124	52371124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:52371124C>T	uc003joy.2	+	23	2958	c.2815C>T	c.(2815-2817)CAC>TAC	p.H939Y	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Missense_Mutation_p.H863Y|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	939	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TGCTGAAATTCACTTAACAAG	0.393													5	28					0	0	0.001168	0	0
ESM1	11082	broad.mit.edu	37	5	54275181	54275181	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:54275181C>T	uc003jpk.2	-	3	603	c.534G>A	c.(532-534)AGG>AGA	p.R178R	ESM1_uc010ivt.2_Silent_p.R128R	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	178					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			TTAACCATTTCCTCATTACGG	0.438													14	120					0	0	0.006122	0	0
SLC38A9	153129	broad.mit.edu	37	5	54948435	54948435	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:54948435G>A	uc003jqf.2	-	10	1075	c.874C>T	c.(874-876)CCC>TCC	p.P292S	SLC38A9_uc003jqd.2_Missense_Mutation_p.P229S|SLC38A9_uc010ivx.2_Missense_Mutation_p.P265S|SLC38A9_uc003jqe.2_RNA|SLC38A9_uc010ivy.2_Missense_Mutation_p.P163S	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	292	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				AGATAAAAGGGGACTGTCCTG	0.433													8	36					0	0	0.004482	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64756156	64756156	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:64756156T>C	uc003jtp.2	-	4	1286	c.472A>G	c.(472-474)ATT>GTT	p.I158V	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	158					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TCTGTAGCAATAACACCATGC	0.299													13	68					0	0	0.013537	0	0
BTF3	689	broad.mit.edu	37	5	72798383	72798383	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:72798383C>T	uc003kcr.1	+	3	515	c.272C>T	c.(271-273)TCC>TTC	p.S91F	BTF3_uc003kcq.1_Missense_Mutation_p.S47F|BTF3_uc003kcs.1_RNA|BTF3_uc003kct.1_RNA	NM_001037637	NP_001032726	P20290	BTF3_HUMAN	basic transcription factor 3 isoform A	91	NAC-A/B.			Missing (in Ref. 2; AAA58398).	regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding				0		Lung NSC(167;0.00405)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;2.73e-54)		CTTCAGTTCTCCTTAAAGAAG	0.378													4	22					0	0	0.000602	0	0
IQGAP2	10788	broad.mit.edu	37	5	75757427	75757427	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:75757427G>A	uc003kek.2	+	2	301	c.79G>A	c.(79-81)GAG>AAG	p.E27K		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	27					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		CTCTGCAGAGGAGATGGATGA	0.418													10	49					0	0	0.008291	0	0
HOMER1	9456	broad.mit.edu	37	5	78672020	78672020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:78672020C>T	uc003kfy.2	-	9	1980	c.877G>A	c.(877-879)GAA>AAA	p.E293K	HOMER1_uc010jab.2_Silent_p.R176R|HOMER1_uc010jac.2_Missense_Mutation_p.E163K|HOMER1_uc010jad.2_Missense_Mutation_p.E119K	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	293	Potential.				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		ATTTCTACTTCCTTCAGAAAC	0.363													10	43					0	0	0.006214	0	0
CMYA5	202333	broad.mit.edu	37	5	79033333	79033333	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:79033333G>A	uc003kgc.2	+	2	8817	c.8745G>A	c.(8743-8745)AAG>AAA	p.K2915K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2915						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAATGCCCAAGGAACCTGAAG	0.383													8	42					0	0	0.004482	0	0
RASGRF2	5924	broad.mit.edu	37	5	80382693	80382693	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:80382693G>A	uc003kha.1	+	9	1311	c.1311G>A	c.(1309-1311)AGG>AGA	p.R437R	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Silent_p.R265R	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	437					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AAAACATAAGGAAAAACCTTG	0.473													7	39					0	0	0.001984	0	0
TTC37	9652	broad.mit.edu	37	5	94852915	94852915	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:94852915G>A	uc003klb.2	-	21	2496	c.2226C>T	c.(2224-2226)GTC>GTT	p.V742V		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	742							binding			ovary(3)|pancreas(1)	4						GACCTAGAAGGACTCCTAAAA	0.423													5	30					0	0	0.001168	0	0
ARSK	153642	broad.mit.edu	37	5	94918630	94918630	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:94918630G>A	uc003kld.2	+	4	585	c.427G>A	c.(427-429)GAA>AAA	p.E143K	ARSK_uc010jbg.2_5'UTR|ARSK_uc011cum.1_RNA	NM_198150	NP_937793	Q6UWY0	ARSK_HUMAN	arylsulfatase K precursor	143						extracellular region	arylsulfatase activity|metal ion binding			pancreas(1)	1		all_cancers(142;3.38e-06)|all_epithelial(76;6.57e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.00473)		all cancers(79;6.5e-16)		TAATCGTGTGGAAGCGTGGAC	0.383													22	95					0	0	0.004656	0	0
LNPEP	4012	broad.mit.edu	37	5	96349452	96349452	+	Silent	SNP	A	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:96349452A>C	uc003kmv.1	+	12	2650	c.2136A>C	c.(2134-2136)CTA>CTC	p.L712L	LNPEP_uc003kmw.1_Silent_p.L698L	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	712	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		GGGAAGCACTAATCCATCAGT	0.363													24	68					0	0	0.014323	0	0
FBXL17	64839	broad.mit.edu	37	5	107216831	107216831	+	Silent	SNP	G	A	A	rs143348449	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:107216831G>A	uc011cvc.1	-	8	2279	c.1872C>T	c.(1870-1872)GTC>GTT	p.V624V	FBXL17_uc003kon.3_Silent_p.V226V	NM_001163315	NP_001156787	Q9UF56	FXL17_HUMAN	F-box and leucine-rich repeat protein 17	624											0		all_cancers(142;0.00273)|all_epithelial(76;0.000362)|Prostate(80;0.0115)|Myeloproliferative disorder(839;0.0393)|Ovarian(225;0.232)		OV - Ovarian serous cystadenocarcinoma(64;9.63e-11)|Epithelial(69;4.02e-10)		TACACCATCCGACATCCACAG	0.468													15	86					0	0	0.003163	0	0
STARD4	134429	broad.mit.edu	37	5	110836762	110836762	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:110836762G>A	uc003kph.1	-	5	419	c.335C>T	c.(334-336)TCC>TTC	p.S112F	STARD4_uc010jbw.1_Missense_Mutation_p.S14F|STARD4_uc010jbx.1_Missense_Mutation_p.S14F|STARD4_uc003kpi.1_Intron|STARD4_uc003kpj.2_Missense_Mutation_p.S112F	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	112	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		TTCTCTTGGGGAAATTATATT	0.353													20	107					0	0	0.012319	0	0
APC	324	broad.mit.edu	37	5	112177788	112177788	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:112177788G>A	uc010jby.2	+	16	6877	c.6497G>A	c.(6496-6498)CGA>CAA	p.R2166Q	APC_uc011cvt.1_Missense_Mutation_p.R2148Q|APC_uc003kpz.3_Missense_Mutation_p.R2166Q|APC_uc003kpy.3_Missense_Mutation_p.R2166Q|APC_uc010jbz.2_Missense_Mutation_p.R1883Q|APC_uc010jca.2_Missense_Mutation_p.R1466Q	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	2166	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)|p.R2166*(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AAAGGCCCACGAATTCTAAAA	0.348		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			10	44					0	0	0.008291	0	0
KCNN2	3781	broad.mit.edu	37	5	113699644	113699644	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:113699644C>T	uc003kqo.2	+	2	985	c.528C>T	c.(526-528)CTC>CTT	p.L176L		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	176	Helical; Name=Segment S2; (Potential).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		TTATCAGTCTCTCCACGATCA	0.478													16	86					0	0	0.010504	0	0
GFRA3	2676	broad.mit.edu	37	5	137600092	137600092	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:137600092C>T	uc003lcn.2	-	2	377	c.237G>A	c.(235-237)GAG>GAA	p.E79E	GFRA3_uc003lco.2_Silent_p.E79E	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	79					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GGACCGAAGGCTCCTCTGAGG	0.607													18	24					0	0	0.008871	0	0
LRRTM2	26045	broad.mit.edu	37	5	138208982	138208982	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:138208982A>T	uc011cyz.1	-	2	1725	c.1268T>A	c.(1267-1269)GTA>GAA	p.V423E	CTNNA1_uc003ldh.2_Intron|CTNNA1_uc011cyx.1_Intron|CTNNA1_uc011cyy.1_Intron|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Intron|LRRTM2_uc010jez.2_Intron|LRRTM2_uc011cza.1_Missense_Mutation_p.V289E|CTNNA1_uc003ldl.2_5'Flank	NM_015564	NP_056379	O43300	LRRT2_HUMAN	leucine rich repeat transmembrane neuronal 2	423	Helical; (Potential).					cell junction|integral to membrane|postsynaptic membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCCCGTAATTACCCGCTGAGT	0.413													24	100					0	0	0.005443	0	0
MATR3	9782	broad.mit.edu	37	5	138643519	138643519	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:138643519C>T	uc003ldu.2	+	5	842	c.415C>T	c.(415-417)CCC>TCC	p.P139S	MATR3_uc003lds.2_Missense_Mutation_p.P139S|MATR3_uc010jfb.2_Missense_Mutation_p.P139S|MATR3_uc003ldt.2_Intron|MATR3_uc003ldw.2_Missense_Mutation_p.P139S|MATR3_uc003ldx.2_Missense_Mutation_p.P139S|MATR3_uc010jfc.2_Missense_Mutation_p.P139S|MATR3_uc003ldy.2_Intron|MATR3_uc011czb.1_Intron|MATR3_uc003ldz.2_Missense_Mutation_p.P139S|MATR3_uc003lea.2_Missense_Mutation_p.P139S	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	139						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TGAGAATTTGCCCCAAATCCT	0.473													7	32					0	0	0.001984	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214382	140214382	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:140214382G>A	uc003lhq.2	+	1	414	c.414G>A	c.(412-414)AGG>AGA	p.R138R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.R138R	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	138	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACACAAAGGAATCTGTTCA	0.567													24	58					0	0	0.003330	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307642	140307642	+	Missense_Mutation	SNP	G	A	A	rs150006101		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:140307642G>A	uc003lih.2	+	1	1341	c.1165G>A	c.(1165-1167)GCT>ACT	p.A389T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.A389T	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	389	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGCTGACGGCTTCCTTTGA	0.507													9	44					0	0	0.010729	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768504	140768504	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:140768504C>T	uc003lkc.1	+	1	1053	c.1053C>T	c.(1051-1053)CCC>CCT	p.P351P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.P351P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	351	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTCTCTACCCAACCTAATTA	0.468													10	49					0	0	0.008291	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439612	145439612	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:145439612C>T	uc003lnt.2	+	9	1977	c.1739C>T	c.(1738-1740)CCC>CTC	p.P580L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P580L|SH3RF2_uc011dbm.1_Missense_Mutation_p.P65L|SH3RF2_uc003lnu.2_Missense_Mutation_p.P71L|SH3RF2_uc011dbn.1_Missense_Mutation_p.P71L|SH3RF2_uc011dbo.1_Missense_Mutation_p.P37L	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	580							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACGGGGGAGCCCGCCCTCACG	0.632													8	39					0	0	0.004482	0	0
SLC36A3	285641	broad.mit.edu	37	5	150666947	150666947	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:150666947G>A	uc003ltw.2	-	6	987	c.568C>T	c.(568-570)CGT>TGT	p.R190C	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.R175C|SLC36A3_uc003ltx.2_Missense_Mutation_p.R231C	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	190	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATGTAGAAACGAATGTCCAGG	0.512													13	61					0	0	0.013537	0	0
KIF4B	285643	broad.mit.edu	37	5	154394888	154394888	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:154394888C>T	uc010jih.1	+	1	1629	c.1469C>T	c.(1468-1470)ACT>ATT	p.T490I		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	490	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GCCATTGATACTGCGGTAGAA	0.448													17	75					0	0	0.008871	0	0
SLIT3	6586	broad.mit.edu	37	5	168199885	168199885	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:168199885C>T	uc003mab.2	-	14	1780	c.1360G>A	c.(1360-1362)GAC>AAC	p.D454N	SLIT3_uc010jjg.2_Missense_Mutation_p.D454N|SLIT3_uc010jji.2_Missense_Mutation_p.D454N|SLIT3_uc003mac.1_Missense_Mutation_p.D251N	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	454	LRRCT 2.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATGGGGTTGTCCTGGAGGTAG	0.612													13	45					0	0	0.002450	0	0
DOCK2	1794	broad.mit.edu	37	5	169410162	169410162	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:169410162G>A	uc003maf.2	+	28	2970	c.2890G>A	c.(2890-2892)GAA>AAA	p.E964K	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.E456K|FAM196B_uc003mag.2_5'Flank	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	964	Interaction with CRKL.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GACCAGCTCTGAACTTGTGGT	0.502													27	89					0	0	0.006320	0	0
UNC5A	90249	broad.mit.edu	37	5	176295819	176295819	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:176295819C>T	uc003mey.2	+	5	767	c.575C>T	c.(574-576)CCG>CTG	p.P192L	UNC5A_uc003mex.1_Missense_Mutation_p.P192L|UNC5A_uc010jkg.1_Missense_Mutation_p.P152L	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	192	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGTGGACCCGTCCCTGGAC	0.662													21	53					0	0	0.002780	0	0
HK3	3101	broad.mit.edu	37	5	176314054	176314054	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:176314054G>A	uc003mfa.2	-	13	1898	c.1806C>T	c.(1804-1806)CTC>CTT	p.L602L	HK3_uc003mez.2_Silent_p.L158L	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	602	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AACCCAGTGGGAGGCTCTGCC	0.607													8	24					0	0	0.003080	0	0
GRM6	2916	broad.mit.edu	37	5	178417676	178417676	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:178417676C>T	uc003mjr.2	-	4	1108	c.929G>A	c.(928-930)GGA>GAA	p.G310E	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	310	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGTCTTGGCTCCCCAGCTGTC	0.667													6	10					0	0	0.001168	0	0
BTNL3	10917	broad.mit.edu	37	5	180424345	180424345	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr5:180424345C>T	uc003mmr.2	+	3	658	c.530C>T	c.(529-531)TCA>TTA	p.S177L		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	177	Ig-like V-type.|Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GATTTGTCTTCAGACTCCAGA	0.502													8	28					0	0	0.003080	0	0
DSP	1832	broad.mit.edu	37	6	7585382	7585382	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:7585382G>A	uc003mxp.1	+	24	8166	c.7887G>A	c.(7885-7887)GAG>GAA	p.E2629E	DSP_uc003mxq.1_Silent_p.E2030E	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2629	Plectin 14.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAAACCTGGAGAAAATCTCCA	0.512													16	135					0	0	0.004990	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596509	24596509	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:24596509C>T	uc011djo.1	-	3	630	c.393G>A	c.(391-393)GGG>GGA	p.G131G	KIAA0319_uc011djp.1_Silent_p.G86G|KIAA0319_uc003neh.1_Silent_p.G131G|KIAA0319_uc011djq.1_Silent_p.G122G|KIAA0319_uc011djr.1_Silent_p.G131G	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	131	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CAGGTGAGTCCCCCCAGATCC	0.552													6	65					0	0	0.001984	0	0
HIST1H3C	8352	broad.mit.edu	37	6	26045748	26045748	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:26045748A>T	uc003nfv.2	+	1	110	c.110A>T	c.(109-111)AAG>ATG	p.K37M	HIST1H2BB_uc003nfu.2_5'Flank	NM_003531	NP_003522	P68431	H31_HUMAN	histone cluster 1, H3c	37					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						GGTGGCGTGAAGAAACCTCAT	0.632													14	68					0	0	0.001855	0	0
ZNF323	64288	broad.mit.edu	37	6	28297280	28297280	+	Silent	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:28297280G>T	uc003nla.2	-	2	581	c.181C>A	c.(181-183)CGA>AGA	p.R61R	ZNF323_uc003nld.2_Silent_p.R61R|ZNF323_uc010jra.2_Silent_p.R61R|ZNF323_uc003nlb.2_Intron|ZNF323_uc010jrb.2_Intron|ZNF323_uc003nlc.2_Silent_p.R61R	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	61	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CAGAGTTCTCGGAGCCGGCTC	0.522													6	263					8.12818e-05	8.36843e-05	0.001984	1	0
GPX5	2880	broad.mit.edu	37	6	28497304	28497304	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:28497304C>T	uc003nll.2	+	2	166	c.164C>T	c.(163-165)TCC>TTC	p.S55F	GPX5_uc003nlm.2_Missense_Mutation_p.S55F|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	55					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	GAATATGTTTCCTTCAAGCAG	0.423													18	91					0	0	0.007413	0	0
SCAND3	114821	broad.mit.edu	37	6	28541016	28541016	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:28541016C>T	uc003nlo.2	-	4	3268	c.2650G>A	c.(2650-2652)GAT>AAT	p.D884N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	884					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tcttccatatcattagccagt	0													10	117					0	0	0.010729	0	0
SCAND3	114821	broad.mit.edu	37	6	28543880	28543880	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:28543880C>T	uc003nlo.2	-	3	1220	c.602G>A	c.(601-603)AGC>AAC	p.S201N		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	201					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACCACCCATGCTTTGAGACAT	0.328													4	37					0	0	0.000602	0	0
TRIM15	89870	broad.mit.edu	37	6	30131610	30131610	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:30131610C>T	uc010jrx.2	+	1	628	c.149C>T	c.(148-150)TCC>TTC	p.S50F	TRIM10_uc003npn.2_5'Flank|TRIM10_uc003npo.3_5'Flank	NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	50	RING-type.				mesodermal cell fate determination	intracellular	zinc ion binding				0						GGGGCCCAATCCTCGGGCAAG	0.672													6	63					0	0	0.003080	0	0
C6orf15	29113	broad.mit.edu	37	6	31079422	31079422	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:31079422G>A	uc003nsk.1	-	2	714	c.714C>T	c.(712-714)ATC>ATT	p.I238I		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	238	Gly-rich.										0						TGATACCCCAGATTCCCTCAG	0.567													14	52					0	0	0.002450	0	0
C2	717	broad.mit.edu	37	6	31895861	31895861	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:31895861C>T	uc003nyf.2	+	2	440	c.176C>T	c.(175-177)CCA>CTA	p.P59L	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Missense_Mutation_p.P59L|C2_uc010jtk.2_Intron|C2_uc011doq.1_Nonsense_Mutation_p.Q21*|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Missense_Mutation_p.P59L	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	59	Sushi 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		TACCCATCCCCAGCATCACGG	0.632													33	330					0	0	0.003271	0	0
TNXB	7148	broad.mit.edu	37	6	32012848	32012848	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:32012848C>T	uc003nzl.2	-	32	11058	c.10856G>A	c.(10855-10857)AGG>AAG	p.R3619K	TNXB_uc003nzg.1_Missense_Mutation_p.R50K|TNXB_uc003nzh.1_Missense_Mutation_p.R88K	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3666	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAGGAGGAACCTGTAGGGGGT	0.647													78	163					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32021267	32021267	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:32021267C>T	uc003nzl.2	-	25	8885	c.8683G>A	c.(8683-8685)GTC>ATC	p.V2895I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2944	Fibronectin type-III 21.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAGATGGTGACCCCGTCCTCG	0.637													103	669					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32024618	32024618	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:32024618G>A	uc003nzl.2	-	23	8090	c.7888C>T	c.(7888-7890)CGC>TGC	p.R2630C		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2690	Fibronectin type-III 19.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCCCCCAGGCGAGGCTTGATG	0.622													161	722					0	0	0.014410	0	0
TNXB	7148	broad.mit.edu	37	6	32038124	32038124	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:32038124G>A	uc003nzl.2	-	14	5260	c.5058C>T	c.(5056-5058)ACC>ACT	p.T1686T		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1768	Fibronectin type-III 10.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTGAGTCTGGGGTGGGGTCTG	0.617													64	232					0	0	0.014410	0	0
HLA-DRB1	3123	broad.mit.edu	37	6	32549529	32549529	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:32549529G>A	uc003obp.3	-	3	500	c.457C>T	c.(457-459)CCA>TCA	p.P153S	HLA-DRB1_uc011dqa.1_5'UTR|HLA-DRB5_uc003obk.3_Intron|HLA-DRB6_uc003obo.1_Intron|HLA-DRB1_uc011dqb.1_5'UTR|HLA-DRB1_uc011dqc.1_5'UTR	NM_002124	NP_002115	P01911	2B1F_HUMAN	major histocompatibility complex, class II, DR	153	Ig-like C1-type.|Beta-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex				skin(1)	1						ATGCTGCCTGGATAGAAACCA	0.532									Rheumatoid_Arthritis|Sj_gren_syndrome	Multiple Myeloma(14;0.17)			5	115					0	0	0.010729	0	0
ITPR3	3710	broad.mit.edu	37	6	33636831	33636832	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:33636831_33636832GG>AC	uc011drk.1	+	18	2306_2307	c.2087_2088GG>AC	c.(2086-2088)TGG>TAC	p.W696Y		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	696	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						TGGCTCACGTGGACTGACAAGA	0.584													21	112					0	0	0.004672	0	0
GRM4	2914	broad.mit.edu	37	6	34101063	34101063	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:34101063T>C	uc003oir.3	-	1	381	c.211A>G	c.(211-213)AAG>GAG	p.K71E	GRM4_uc011dsn.1_Missense_Mutation_p.K71E|GRM4_uc010jvh.2_Missense_Mutation_p.K71E|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_5'UTR	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	71	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TTTTCCTTCTTAAGTTCTCCA	0.612													6	52					0	0	0.001168	0	0
ANKS1A	23294	broad.mit.edu	37	6	34949592	34949593	+	Silent	DNP	CC	TT	TT			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:34949592_34949593CC>TT	uc003ojx.3	+	4	703_704	c.561_562CC>TT	c.(559-564)GACCTG>GATTTG	p.187_188DL>DL	ANKS1A_uc011dss.1_Silent_p.187_188DL>DL|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR|ANKS1A_uc010jvr.1_RNA	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	187_188	ANK 4.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CCCCTTTGGACCTGGCAGCACT	0.554													17	97					0	0	0.004672	0	0
FGD2	221472	broad.mit.edu	37	6	36976721	36976721	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:36976721C>T	uc010jwp.1	+	2	351	c.180C>T	c.(178-180)GCC>GCT	p.A60A	FGD2_uc003onf.2_Silent_p.A60A|FGD2_uc011dtu.1_Silent_p.A60A|FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	60					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						TCGGGGAGGCCGTGGGGTCTG	0.632													9	86					0	0	0.004482	0	0
NFYA	4800	broad.mit.edu	37	6	41059431	41059431	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:41059431A>G	uc003opo.2	+	7	890	c.712A>G	c.(712-714)ATG>GTG	p.M238V	NFYA_uc003opp.2_Missense_Mutation_p.M209V|NFYA_uc003opq.2_Missense_Mutation_p.M209V	NM_002505	NP_002496	P23511	NFYA_HUMAN	nuclear transcription factor Y, alpha isoform 1	238					transcription from RNA polymerase II promoter	CCAAT-binding factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGGATGGTCATGGTAAGAAA	0.423													19	101					0	0	0.014323	0	0
RSPH9	221421	broad.mit.edu	37	6	43612929	43612929	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:43612929C>T	uc003ovw.1	+	1	120	c.94C>T	c.(94-96)CTT>TTT	p.L32F	RSPH9_uc003ovx.1_Missense_Mutation_p.L32F	NM_152732	NP_689945	Q9H1X1	RSPH9_HUMAN	radial spoke head 9 homolog	32					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton				upper_aerodigestive_tract(1)|skin(1)	2						GCTCACGTCTCTTATGCTGGT	0.642									Kartagener_syndrome				21	73					0	0	0.002780	0	0
GPR115	221393	broad.mit.edu	37	6	47682046	47682046	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:47682046G>A	uc003oza.1	+	6	1323	c.1065G>A	c.(1063-1065)AAG>AAA	p.K355K	GPR115_uc003oyz.1_Silent_p.K412K|GPR115_uc003ozb.1_Silent_p.K353K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	355	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GGCACTCCAAGAAAAGGAGAT	0.453													11	73					0	0	0.008291	0	0
GPR115	221393	broad.mit.edu	37	6	47682440	47682440	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:47682440C>T	uc003oza.1	+	6	1717	c.1459C>T	c.(1459-1461)CTG>TTG	p.L487L	GPR115_uc003oyz.1_Silent_p.L544L|GPR115_uc003ozb.1_Silent_p.L485L	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	487	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CTACCTCTCTCTGTTTTTCTG	0.408													28	198					0	0	0.007291	0	0
ICK	22858	broad.mit.edu	37	6	52878638	52878638	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:52878638G>A	uc003pbh.2	-	10	1464	c.974C>T	c.(973-975)CCA>CTA	p.P325L	ICK_uc003pbi.2_Missense_Mutation_p.P325L	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	325					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					CTTGGCTGGTGGCTGGGCAGG	0.537													11	59					0	0	0.013537	0	0
TINAG	27283	broad.mit.edu	37	6	54173382	54173382	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:54173382T>C	uc003pcj.2	+	1	180	c.34T>C	c.(34-36)TAT>CAT	p.Y12H	TINAG_uc003pci.2_Missense_Mutation_p.Y12H|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	12					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			AATCTTCTCTTATCTTACTAC	0.413													10	48					0	0	0.006214	0	0
FAM83B	222584	broad.mit.edu	37	6	54806232	54806232	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:54806232C>T	uc003pck.2	+	5	2579	c.2463C>T	c.(2461-2463)GAC>GAT	p.D821D		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	821										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGAAATCAGACACAAAAGTTG	0.378													6	31					0	0	0.001984	0	0
FAM83B	222584	broad.mit.edu	37	6	54806613	54806613	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:54806613G>A	uc003pck.2	+	5	2960	c.2844G>A	c.(2842-2844)CAG>CAA	p.Q948Q		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	948										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GCTCTATTCAGCCAACAAGCA	0.438													13	74					0	0	0.001855	0	0
PRIM2	5558	broad.mit.edu	37	6	57398263	57398263	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:57398263G>A	uc003pdx.2	+	10	1053	c.966G>A	c.(964-966)CAG>CAA	p.Q322Q		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	322					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		CTTTGGAACAGACATTGCAGT	0.368													6	158					0	0	0.004482	0	0
PHF3	23469	broad.mit.edu	37	6	64394342	64394342	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:64394342G>T	uc003pep.1	+	3	745	c.719G>T	c.(718-720)TGT>TTT	p.C240F	PHF3_uc010kaf.1_Missense_Mutation_p.C240F|PHF3_uc003pem.2_Missense_Mutation_p.C193F|PHF3_uc010kag.1_Missense_Mutation_p.C152F|PHF3_uc010kah.1_Missense_Mutation_p.C54F|PHF3_uc003pen.2_Missense_Mutation_p.C152F|PHF3_uc011dxs.1_Intron|PHF3_uc003peo.2_Missense_Mutation_p.C240F	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	240					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			AAGCATAAGTGTAATAATCCG	0.348													18	85					2.35188e-11	2.44306e-11	0.006122	1	0
COL9A1	1297	broad.mit.edu	37	6	70990730	70990730	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:70990730G>A	uc003pfg.3	-	9	1048	c.889C>T	c.(889-891)CCT>TCT	p.P297S	COL9A1_uc003pfe.3_5'Flank|COL9A1_uc003pff.3_Missense_Mutation_p.P54S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	297	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GGGCCCTTAGGACCTCGGTCA	0.577													10	54					0	0	0.010729	0	0
RIMS1	22999	broad.mit.edu	37	6	73000453	73000453	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:73000453G>A	uc003pga.2	+	25	3703	c.3626G>A	c.(3625-3627)GGA>GAA	p.G1209E	RIMS1_uc011dyb.1_Intron|RIMS1_uc003pgc.2_Intron|RIMS1_uc010kaq.2_Intron|RIMS1_uc011dyc.1_Intron|RIMS1_uc010kar.2_Intron|RIMS1_uc011dyd.1_Intron|RIMS1_uc003pgf.2_Intron|RIMS1_uc003pgg.2_Intron|RIMS1_uc003pgi.2_Intron|RIMS1_uc003pgh.2_Intron|RIMS1_uc003pgd.2_Intron|RIMS1_uc003pge.2_Intron|RIMS1_uc011dye.1_Intron|RIMS1_uc011dyf.1_Intron	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1209					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GTCATTAGGGGAAAACATCCT	0.517													12	31					0	0	0.001855	0	0
CD109	135228	broad.mit.edu	37	6	74407162	74407162	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:74407162C>T	uc003php.2	+	2	539	c.114C>T	c.(112-114)CCC>CCT	p.P38P	CD109_uc010kaz.2_Silent_p.P38P|CD109_uc003phq.2_Silent_p.P38P|CD109_uc010kba.2_Silent_p.P38P|uc003pho.1_5'Flank	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	38						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						TCATCAGGCCCGGAGGAAATG	0.502													41	106					0	0	0.010771	0	0
COL12A1	1303	broad.mit.edu	37	6	75858121	75858121	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:75858121G>A	uc003phs.2	-	22	4406	c.4240C>T	c.(4240-4242)CGA>TGA	p.R1414*	COL12A1_uc003pht.2_Nonsense_Mutation_p.R250*	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1414	Fibronectin type-III 9.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						ACCTTATATCGATCCACACTG	0.433													9	45					0	0	0.006214	0	0
IMPG1	3617	broad.mit.edu	37	6	76751792	76751792	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:76751792G>T	uc003pik.1	-	2	249	c.119C>A	c.(118-120)CCA>CAA	p.P40Q		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	40					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TTCATTTCTTGGGGGATTGTC	0.313													13	100					1.05317e-09	1.09075e-09	0.002450	1	0
SNAP91	9892	broad.mit.edu	37	6	84269917	84269917	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:84269917C>T	uc011dze.1	-	27	2854	c.2537G>A	c.(2536-2538)GGG>GAG	p.G846E	SNAP91_uc011dzd.1_Missense_Mutation_p.G344E|SNAP91_uc003pkb.2_Missense_Mutation_p.G755E|SNAP91_uc003pkc.2_Missense_Mutation_p.G816E|SNAP91_uc003pkd.2_Missense_Mutation_p.G539E|SNAP91_uc003pka.2_Missense_Mutation_p.G844E	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	846	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		CATGCCTGTCCCAGCAGGAGG	0.547													13	68					0	0	0.004007	0	0
MDN1	23195	broad.mit.edu	37	6	90397082	90397082	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:90397082A>G	uc003pnn.1	-	68	11547	c.11431T>C	c.(11431-11433)TGG>CGG	p.W3811R		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3811					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		AGTTTACGCCACCGAATGATC	0.378													6	47					0	0	0.001984	0	0
COQ3	51805	broad.mit.edu	37	6	99823983	99823983	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:99823983T>C	uc003ppk.2	-	5	589	c.562A>G	c.(562-564)AAA>GAA	p.K188E		NM_017421	NP_059117	Q9NZJ6	COQ3_HUMAN	hexaprenyldihydroxybenzoate methyltransferase	188					glycerol metabolic process|ubiquinone biosynthetic process	mitochondrial matrix	2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity|3-demethylubiquinone-9 3-O-methyltransferase activity|hexaprenyldihydroxybenzoate methyltransferase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0625)		TCAAATGATTTATGGCATTGT	0.428													12	80					0	0	0.001855	0	0
SIM1	6492	broad.mit.edu	37	6	100841510	100841510	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:100841510C>T	uc003pqj.3	-	10	1630	c.1423G>A	c.(1423-1425)GGC>AGC	p.G475S	SIM1_uc010kcu.2_Missense_Mutation_p.G475S	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	475	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AAGTACCTGCCTGCCTCACAT	0.637													13	74					0	0	0.003163	0	0
BVES	11149	broad.mit.edu	37	6	105564691	105564691	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:105564691C>T	uc003pqw.2	-	6	858	c.701G>A	c.(700-702)AGA>AAA	p.R234K	BVES_uc003pqx.2_Missense_Mutation_p.R234K|BVES_uc003pqy.2_Missense_Mutation_p.R234K	NM_147147	NP_671488	Q8NE79	POPD1_HUMAN	blood vessel epicardial substance isoform 5	234	Cytoplasmic (Potential).				epithelial cell-cell adhesion|muscle organ development|positive regulation of locomotion|positive regulation of receptor recycling|regulation of Cdc42 GTPase activity|regulation of cell shape|regulation of Rac GTPase activity|substrate adhesion-dependent cell spreading|vesicle-mediated transport	integral to membrane|lateral plasma membrane|tight junction	structural molecule activity				0		all_cancers(87;2.83e-05)|Acute lymphoblastic leukemia(125;1.95e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0101)|Colorectal(196;0.204)|Lung NSC(302;0.238)				GTATGTTAATCTTTCTCTTGA	0.338													5	29					0	0	0.001168	0	0
PRDM1	639	broad.mit.edu	37	6	106554840	106554840	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:106554840C>T	uc003prd.2	+	7	2191	c.1957C>T	c.(1957-1959)CAT>TAT	p.H653Y	PRDM1_uc003pre.2_Missense_Mutation_p.H519Y	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	653	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCTGCGACTCCATTCTGGAGA	0.562			D|N|Mis|F|S		DLBCL								18	83					0	0	0.007413	0	0
ATG5	9474	broad.mit.edu	37	6	106696042	106696042	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:106696042G>A	uc003prf.2	-	6	909	c.556C>T	c.(556-558)CCC>TCC	p.P186S	ATG5_uc010kdb.2_Silent_p.S184S|ATG5_uc003prg.2_Missense_Mutation_p.P108S|ATG5_uc010kdc.2_Silent_p.S62S	NM_004849	NP_004840	Q9H1Y0	ATG5_HUMAN	APG5 autophagy 5-like	186					apoptosis|autophagic vacuole assembly|negative regulation of type I interferon production|post-translational protein modification	autophagic vacuole|pre-autophagosomal structure membrane	protein binding			large_intestine(1)	1	Breast(9;0.0296)	all_cancers(87;0.000301)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.0612)|Lung NSC(302;0.216)	BRCA - Breast invasive adenocarcinoma(8;0.00802)	OV - Ovarian serous cystadenocarcinoma(136;0.128)|Epithelial(106;0.159)|all cancers(137;0.18)		ATTCTAAAGGGGATATAACGA	0.328													4	49					0	0	0.009096	0	0
MICAL1	64780	broad.mit.edu	37	6	109768899	109768899	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:109768899C>T	uc003ptj.2	-	14	2225	c.1971G>A	c.(1969-1971)AAG>AAA	p.K657K	MICAL1_uc003ptk.2_Silent_p.K657K|MICAL1_uc010kdr.2_Silent_p.K571K|MICAL1_uc011eaq.1_Silent_p.K676K	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	657	Potential.				cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		AGCGCAGCTTCTTGCCACCAG	0.517													23	129					0	0	0.005443	0	0
CDK19	23097	broad.mit.edu	37	6	110953310	110953310	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:110953310A>T	uc003puh.1	-	6	642	c.569T>A	c.(568-570)TTG>TAG	p.L190*	CDK19_uc003pui.1_Nonsense_Mutation_p.L130*|CDK19_uc011eax.1_Nonsense_Mutation_p.L66*	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	190	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						TACTGGATCCAAATCTGCTAG	0.333													9	44					0	0	0.006214	0	0
REV3L	5980	broad.mit.edu	37	6	111696451	111696451	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:111696451G>T	uc003puy.3	-	13	3430	c.3107C>A	c.(3106-3108)CCC>CAC	p.P1036H	REV3L_uc003pux.3_Missense_Mutation_p.P958H|REV3L_uc003puz.3_Missense_Mutation_p.P958H	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1036					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TGGATAAATGGGATATTTGGT	0.333								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					22	136					7.92952e-12	8.24513e-12	0.003954	1	0
FYN	2534	broad.mit.edu	37	6	112035566	112035566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:112035566G>A	uc003pvj.2	-	4	668	c.328C>T	c.(328-330)CAA>TAA	p.Q110*	FYN_uc003pvi.2_Nonsense_Mutation_p.Q110*|FYN_uc003pvk.2_Nonsense_Mutation_p.Q110*|FYN_uc003pvh.2_Nonsense_Mutation_p.Q110*	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	110	SH3.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TTCAATATTTGAAATTTTTCT	0.438													8	41					0	0	0.006214	0	0
STL	7955	broad.mit.edu	37	6	125232112	125232112	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:125232112C>T	uc003pzq.2	-	7		c.2622G>A				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						CGGCAAATTTCGACTGCTCCA	0.308			T	ETV6	B-ALL								7	49					0	0	0.006214	0	0
C6orf174	387104	broad.mit.edu	37	6	127797362	127797362	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:127797362C>T	uc003qbd.2	-	6	2674	c.1809G>A	c.(1807-1809)AGG>AGA	p.R603R	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	603	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CGACGATTTTCCTGCCCAGGA	0.607													37	191					0	0	0.010771	0	0
PTPRK	5796	broad.mit.edu	37	6	128302403	128302403	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:128302403G>A	uc003qbk.2	-	25	3933	c.3566C>T	c.(3565-3567)GCT>GTT	p.A1189V	PTPRK_uc003qbj.2_Missense_Mutation_p.A1190V|PTPRK_uc010kfc.2_Missense_Mutation_p.A1196V|PTPRK_uc011ebu.1_Missense_Mutation_p.A1212V	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1189	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GCAGTCTTCAGCTTGTAGTCG	0.428													11	19					0	0	0.008291	0	0
SAMD3	154075	broad.mit.edu	37	6	130467282	130467282	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:130467282C>T	uc003qbv.2	-	11	1394	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	SAMD3_uc003qbx.2_Silent_p.K356K|SAMD3_uc003qbw.2_Silent_p.K356K	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	356										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		GCCTTGTTTTCTTATAAATAT	0.308													7	45					0	0	0.001984	0	0
SAMD3	154075	broad.mit.edu	37	6	130497110	130497110	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:130497110C>T	uc003qbv.2	-	9	1024	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	SAMD3_uc003qbx.2_Missense_Mutation_p.R233Q|SAMD3_uc003qbw.2_Missense_Mutation_p.R233Q|SAMD3_uc010kfg.1_3'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	233										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TATGGGTCTTCGAACATATTT	0.343													9	61					0	0	0.006214	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762216	130762216	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:130762216C>T	uc003qca.2	+	3	1520	c.649C>T	c.(649-651)CGG>TGG	p.R217W	TMEM200A_uc010kfh.2_Missense_Mutation_p.R217W|TMEM200A_uc010kfi.2_Missense_Mutation_p.R217W|TMEM200A_uc003qcb.2_Missense_Mutation_p.R217W	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	217	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CTCGGGTTTTCGGAGCAGTTT	0.478													8	24					0	0	0.003080	0	0
TAAR6	319100	broad.mit.edu	37	6	132892276	132892276	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:132892276A>G	uc011eck.1	+	1	816	c.816A>G	c.(814-816)TTA>TTG	p.L272L		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	272	Helical; Name=6; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TTTCATGGTTACCATATAGCA	0.413													17	57					0	0	0.004007	0	0
TAAR5	9038	broad.mit.edu	37	6	132910326	132910326	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:132910326G>A	uc003qdk.2	-	1	552	c.500C>T	c.(499-501)TCG>TTG	p.S167L		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	167	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		GAGGAATAACGAAGTGTATGC	0.547													25	69					0	0	0.004656	0	0
FAM54A	113115	broad.mit.edu	37	6	136552438	136552438	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:136552438G>A	uc010kgp.1	-	8	1523	c.1133C>T	c.(1132-1134)ACA>ATA	p.T378I	FAM54A_uc003qgt.1_Missense_Mutation_p.T378I|FAM54A_uc003qgu.1_Missense_Mutation_p.T335I	NM_001099286	NP_001092756	Q6P444	FA54A_HUMAN	DUF729 domain containing 1	378										skin(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00228)|OV - Ovarian serous cystadenocarcinoma(155;0.00504)		TAGAAGGCTTGTGTTGCTGAT	0.363													4	21					0	0	0.000602	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094928	139094928	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:139094928G>A	uc003qie.2	+	1	272	c.117G>A	c.(115-117)AGG>AGA	p.R39R	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	39											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		AGCTGCGGAGGAGCGGGTCCC	0.647													50	261					0	0	0.014410	0	0
NMBR	4829	broad.mit.edu	37	6	142396941	142396941	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:142396941G>A	uc003qiu.2	-	3	1158	c.1017C>T	c.(1015-1017)CTC>CTT	p.L339L		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	339	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		TCCCACAGCAGAGTTGGCTGT	0.478													31	74					0	0	0.005524	0	0
NMBR	4829	broad.mit.edu	37	6	142397089	142397089	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:142397089G>A	uc003qiu.2	-	3	1010	c.869C>T	c.(868-870)TCT>TTT	p.S290F		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	290	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		ATAGTTGAAAGACCGATACAT	0.433													6	44					0	0	0.001168	0	0
HIVEP2	3097	broad.mit.edu	37	6	143089611	143089611	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:143089611G>A	uc003qjd.2	-	6	5993	c.5250C>T	c.(5248-5250)ATC>ATT	p.I1750I		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1750					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TTTCCTTTAAGATATTTCCCA	0.363													12	86					0	0	0.013537	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149777843	149777843	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:149777843G>A	uc003qmn.1	-	3	709	c.639C>T	c.(637-639)TTC>TTT	p.F213F	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Silent_p.F213F|ZC3H12D_uc010kid.2_Silent_p.F213F	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	213						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TCTGCTCGATGAACCACTTCC	0.522													18	73					0	0	0.008871	0	0
SYNE1	23345	broad.mit.edu	37	6	152826376	152826376	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:152826376G>A	uc010kiw.2	-	9	1340	c.738C>T	c.(736-738)GCC>GCT	p.A246A	SYNE1_uc003qot.3_Silent_p.A253A|SYNE1_uc003qou.3_Silent_p.A246A|SYNE1_uc010kjb.1_Silent_p.A246A|SYNE1_uc003qpa.1_Silent_p.A246A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	246	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GTTCTGTTTCGGCGATAGTGA	0.428										HNSCC(10;0.0054)			8	80					0	0	0.006214	0	0
TIAM2	26230	broad.mit.edu	37	6	155561752	155561752	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:155561752C>T	uc003qqb.2	+	18	4530	c.3257C>T	c.(3256-3258)CCT>CTT	p.P1086L	TIAM2_uc003qqe.2_Missense_Mutation_p.P1086L|TIAM2_uc010kjj.2_Missense_Mutation_p.P619L|TIAM2_uc003qqf.2_Missense_Mutation_p.P462L|TIAM2_uc011efl.1_Missense_Mutation_p.P422L|TIAM2_uc003qqg.2_Missense_Mutation_p.P398L|TIAM2_uc003qqh.2_Missense_Mutation_p.P11L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	1086					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CAGGATCCTCCTCCGAGGTCT	0.572													16	52					0	0	0.004007	0	0
NOX3	50508	broad.mit.edu	37	6	155774610	155774610	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:155774610G>A	uc003qqm.2	-	4	371	c.268C>T	c.(268-270)CCG>TCG	p.P90S		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	90	Ferric oxidoreductase.|Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CTCCTCCACGGTCCTCTGCAG	0.383													32	185					0	0	0.005524	0	0
TAGAP	117289	broad.mit.edu	37	6	159457419	159457419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:159457419C>T	uc003qrz.2	-	10	1968	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	TAGAP_uc011eft.1_Missense_Mutation_p.E483K|TAGAP_uc003qsa.2_Missense_Mutation_p.E368K	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	546					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		AGCTGGCTTTCCTTTCTGACA	0.582													9	129					0	0	0.004482	0	0
IGF2R	3482	broad.mit.edu	37	6	160496916	160496916	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:160496916C>T	uc003qta.2	+	36	5352	c.5204C>T	c.(5203-5205)CCA>CTA	p.P1735L		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	1735	Lumenal (Potential).|12.				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		ATACTCAATCCAATAGCAAAT	0.428													17	76					0	0	0.004990	0	0
LPA	4018	broad.mit.edu	37	6	161027540	161027540	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:161027540C>T	uc003qtl.2	-	18	2874	c.2754G>A	c.(2752-2754)CCG>CCA	p.P918P		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3426	Kringle 30.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GGCTTGGAATCGGGGTAATAG	0.527													20	121					0	0	0.003954	0	0
CCR6	1235	broad.mit.edu	37	6	167550381	167550381	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:167550381T>C	uc003qvl.2	+	13	3139	c.663T>C	c.(661-663)TTT>TTC	p.F221F	CCR6_uc010kkm.2_Silent_p.F221F|CCR6_uc003qvn.3_Silent_p.F221F|CCR6_uc003qvm.3_Silent_p.F221F	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	221	Helical; Name=5; (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		AGCTACTCTTTGGTTTCTTTA	0.458													13	94					0	0	0.002450	0	0
TTLL2	83887	broad.mit.edu	37	6	167754861	167754861	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr6:167754861G>A	uc003qvs.1	+	3	1561	c.1473G>A	c.(1471-1473)GAG>GAA	p.E491E	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	491					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TGGAAGGAGAGATGAGTGGGC	0.532													6	56					0	0	0.001168	0	0
C7orf27	221927	broad.mit.edu	37	7	2584620	2584620	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:2584620G>A	uc003smi.2	-	4	395	c.353C>T	c.(352-354)ACC>ATC	p.T118I	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_Missense_Mutation_p.T118I	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	118					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		GCTGCGCACGGTGGGGACGGC	0.672													5	10					0	0	0.000602	0	0
C7orf70	84792	broad.mit.edu	37	7	6370657	6370657	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:6370657T>C	uc003spu.2	-	2	597	c.129A>G	c.(127-129)GCA>GCG	p.A43A		NM_001037163	NP_001032240	Q7Z4H9	SIPAR_HUMAN	hypothetical protein LOC84792	43						nucleus					0						TCCAGGAGGGTGCATCTGCAG	0.547													13	67					0	0	0.002450	0	0
COL28A1	340267	broad.mit.edu	37	7	7477065	7477065	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:7477065C>T	uc003src.1	-	22	1868	c.1751G>A	c.(1750-1752)GGA>GAA	p.G584E	COL28A1_uc011jxe.1_Missense_Mutation_p.G267E|COL28A1_uc003srd.2_Missense_Mutation_p.G139E|COL28A1_uc003sre.1_Missense_Mutation_p.G5E	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	584					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TCCAGGCATTCCAAAAGGGCC	0.343													13	37					0	0	0.004990	0	0
COL28A1	340267	broad.mit.edu	37	7	7571399	7571399	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:7571399C>T	uc003src.1	-	3	378	c.261G>A	c.(259-261)TTG>TTA	p.L87L	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	87	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TGTCATATTCCAAGGAGCGAC	0.423													31	56					0	0	0.012213	0	0
HDAC9	9734	broad.mit.edu	37	7	18631235	18631235	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:18631235C>T	uc003suh.2	+	4	544	c.503C>T	c.(502-504)TCC>TTC	p.S168F	HDAC9_uc003sue.2_Missense_Mutation_p.S168F|HDAC9_uc011jyd.1_Missense_Mutation_p.S168F|HDAC9_uc003sui.2_Missense_Mutation_p.S171F|HDAC9_uc003suj.2_Missense_Mutation_p.S171F|HDAC9_uc011jya.1_Missense_Mutation_p.S209F|HDAC9_uc003sua.1_Missense_Mutation_p.S190F|HDAC9_uc011jyb.1_Missense_Mutation_p.S168F|HDAC9_uc003sud.1_Missense_Mutation_p.S168F|HDAC9_uc011jyc.1_Missense_Mutation_p.S171F|HDAC9_uc003suf.1_Missense_Mutation_p.S199F|HDAC9_uc010kud.1_Missense_Mutation_p.S171F|HDAC9_uc011jye.1_Missense_Mutation_p.S140F|HDAC9_uc011jyf.1_Missense_Mutation_p.S137F|HDAC9_uc010kue.1_5'UTR	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	168					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AAAAATCATTCCGTGAGCCGC	0.383													21	46					0	0	0.014323	0	0
MACC1	346389	broad.mit.edu	37	7	20193960	20193960	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:20193960G>A	uc003sus.3	-	6	2511	c.2202C>T	c.(2200-2202)ATC>ATT	p.I734I	MACC1_uc010kug.2_Silent_p.I734I	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	734					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						CAGCTTCTTGGATGAGACGTG	0.438													4	43					0	0	0.009096	0	0
ABCB5	340273	broad.mit.edu	37	7	20762706	20762706	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:20762706C>T	uc003suw.3	+	12	1700	c.1154C>T	c.(1153-1155)TCC>TTC	p.S385F	ABCB5_uc010kuh.2_Missense_Mutation_p.S830F|ABCB5_uc003sux.1_Missense_Mutation_p.S8F	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	385	Helical; (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GTTATCATTTCCTTTATATAT	0.413													21	58					0	0	0.012319	0	0
OSBPL3	26031	broad.mit.edu	37	7	24849512	24849512	+	Missense_Mutation	SNP	C	T	T	rs61756017	byFrequency	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:24849512C>T	uc003sxf.2	-	20	2636	c.2231G>A	c.(2230-2232)GGA>GAA	p.G744E	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.G708E|OSBPL3_uc003sxh.2_Missense_Mutation_p.G713E|OSBPL3_uc003sxi.2_Missense_Mutation_p.G677E	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	744					lipid transport		lipid binding|protein binding			skin(1)	1						AACCGCTTTTCCACTCCTGTC	0.488													42	124					0	0	0.010771	0	0
OSBPL3	26031	broad.mit.edu	37	7	24902884	24902884	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:24902884C>T	uc003sxf.2	-	9	1210	c.805G>A	c.(805-807)GAA>AAA	p.E269K	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_Intron|OSBPL3_uc003sxg.2_Missense_Mutation_p.E269K|OSBPL3_uc003sxh.2_Intron|OSBPL3_uc003sxi.2_Intron|OSBPL3_uc003sxj.1_Missense_Mutation_p.E34K|OSBPL3_uc003sxk.1_Intron	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	269					lipid transport		lipid binding|protein binding			skin(1)	1						GATCTTTTTTCCTTTTTGGGA	0.448													14	73					0	0	0.004007	0	0
NPVF	64111	broad.mit.edu	37	7	25266626	25266626	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:25266626C>T	uc003sxo.2	-	2	205	c.158G>A	c.(157-159)GGG>GAG	p.G53E		NM_022150	NP_071433	Q9HCQ7	RFRP_HUMAN	neuropeptide VF precursor	53					neuropeptide signaling pathway	extracellular region|membrane	G-protein coupled receptor activity			ovary(1)	1						GCTTCTTTCCCCTTTTGGGTA	0.353													16	84					0	0	0.004990	0	0
INMT	11185	broad.mit.edu	37	7	30791901	30791901	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:30791901C>T	uc003tbs.1	+	1	151	c.135C>T	c.(133-135)CTC>CTT	p.L45L	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_Intron|INMT_uc010kwd.1_Silent_p.L45L	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	45						cytoplasm	amine N-methyltransferase activity				0						TGGAATGTCTCCACAAGACCT	0.592													12	71					0	0	0.010729	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31120239	31120239	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:31120239G>A	uc003tca.1	+	5	500	c.277G>A	c.(277-279)GAA>AAA	p.E93K	ADCYAP1R1_uc003tcb.1_Intron|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.E93K|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.E93K|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.E93K	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	93	Extracellular (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CTGGGAGACCGAAACCATTGG	0.562													12	56					0	0	0.002450	0	0
PKD1L1	168507	broad.mit.edu	37	7	47832359	47832359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:47832359C>T	uc003tny.1	-	56	8392	c.8392G>A	c.(8392-8394)GAA>AAA	p.E2798K	C7orf69_uc003tnz.3_5'Flank|C7orf69_uc003toa.1_5'Flank	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2798	Cytoplasmic (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ATCAGAAGTTCGTCTAACAGA	0.403													10	36					0	0	0.010729	0	0
IKZF1	10320	broad.mit.edu	37	7	50468256	50468256	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:50468256C>T	uc003tow.3	+	9	1659	c.1491C>T	c.(1489-1491)TAC>TAT	p.Y497Y	IKZF1_uc003tox.3_Silent_p.Y455Y|IKZF1_uc003toy.3_Silent_p.Y455Y|IKZF1_uc011kck.1_Silent_p.Y410Y|IKZF1_uc003toz.3_Silent_p.Y467Y|IKZF1_uc010kyx.2_Silent_p.Y237Y|IKZF1_uc003tpa.3_Silent_p.Y239Y	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	497	C2H2-type 6.				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding			haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				TGTGCGGCTACCACAGCCAGG	0.617			D		ALL								5	28					0	0	0.001168	0	0
EGFR	1956	broad.mit.edu	37	7	55220311	55220311	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:55220311A>G	uc003tqk.2	+	6	947	c.701A>G	c.(700-702)AAC>AGC	p.N234S	EGFR_uc003tqh.2_Missense_Mutation_p.N234S|EGFR_uc003tqi.2_Missense_Mutation_p.N234S|EGFR_uc003tqj.2_Missense_Mutation_p.N234S|EGFR_uc010kzg.1_Missense_Mutation_p.N189S|EGFR_uc011kco.1_Missense_Mutation_p.N181S|EGFR_uc003tql.1_RNA	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	234	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TGCTGCCACAACCAGTGTGCT	0.647		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			20	124					0	0	0.007413	0	0
ZNF479	90827	broad.mit.edu	37	7	57193746	57193746	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:57193746C>T	uc010kzo.2	-	4	512	c.241G>A	c.(241-243)GAG>AAG	p.E81K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	81	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			GCTACCATCTCATTTCTCTTT	0.413													38	83					0	0	0.013114	0	0
TYW1	55253	broad.mit.edu	37	7	66489949	66489949	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:66489949A>G	uc003tvn.2	+	7	1073	c.924A>G	c.(922-924)CTA>CTG	p.L308L	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	308					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				ATCAGAGCCTAAATTCCATTG	0.428													20	77					0	0	0.014323	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657494	72657494	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:72657494C>T	uc003txs.1	-	13	2418	c.1490G>A	c.(1489-1491)GGA>GAA	p.G497E	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ttctggtattcccaccttgtc	0													66	148					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82545710	82545710	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:82545710G>A	uc003uhx.2	-	7	11881	c.11592C>T	c.(11590-11592)TTC>TTT	p.F3864F	PCLO_uc003uhv.2_Silent_p.F3864F|PCLO_uc010lec.2_Silent_p.F829F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3795	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAAACTGGCTGAATTCAGTTT	0.468													121	271					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82764839	82764839	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:82764839G>A	uc003uhx.2	-	3	2316	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	PCLO_uc003uhv.2_Missense_Mutation_p.S676F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	622	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGCTGTGGGGATGATTTGCT	0.522													18	48					0	0	0.007413	0	0
GRM3	2913	broad.mit.edu	37	7	86479772	86479772	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:86479772C>T	uc003uid.2	+	5	3577	c.2478C>T	c.(2476-2478)ATC>ATT	p.I826I	GRM3_uc010lef.2_Missense_Mutation_p.P469S|GRM3_uc010leg.2_Silent_p.I698I|GRM3_uc010leh.2_Silent_p.I418I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	826	Helical; Name=7; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTCACATCATCCTGTTTCAAC	0.488													9	44					0	0	0.006214	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86509800	86509800	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:86509800G>A	uc011kha.1	-	22	3262	c.3077C>T	c.(3076-3078)TCC>TTC	p.S1026F	KIAA1324L_uc003uif.1_Missense_Mutation_p.S786F|KIAA1324L_uc011kgz.1_Missense_Mutation_p.S912F|KIAA1324L_uc003uie.2_Missense_Mutation_p.S859F	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	1026	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					TATATTTGGGGATCTTGAGGT	0.348													11	48					0	0	0.010729	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962805	88962805	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:88962805G>A	uc011khi.1	+	4	1047	c.509G>A	c.(508-510)GGA>GAA	p.G170E		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	170						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTCCTTAAAGGAAAAAATCTC	0.443										HNSCC(36;0.09)			8	31					0	0	0.004482	0	0
CDK14	5218	broad.mit.edu	37	7	90747450	90747450	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:90747450G>A	uc003uky.2	+	14	1587	c.1365G>A	c.(1363-1365)GGG>GGA	p.G455G	CDK14_uc003ukz.1_Silent_p.G437G|CDK14_uc010les.1_Silent_p.G409G|CDK14_uc011khl.1_Silent_p.G326G	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	455					cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						GGGCCTTTGGGAAAAACAATA	0.418													5	48					0	0	0.000602	0	0
AKAP9	10142	broad.mit.edu	37	7	91694579	91694579	+	Silent	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:91694579A>G	uc003ulg.2	+	25	6237	c.6012A>G	c.(6010-6012)GAA>GAG	p.E2004E	AKAP9_uc003ulf.2_Silent_p.E2004E|AKAP9_uc003uli.2_Silent_p.E1627E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2016	Potential.|Glu-rich.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TAATGAAGGAAAAACTAGAAG	0.294			T	BRAF	papillary thyroid								5	21					0	0	0.001984	0	0
SGCE	8910	broad.mit.edu	37	7	94230004	94230004	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:94230004G>A	uc003unl.2	-	7	1102	c.991C>T	c.(991-993)CTT>TTT	p.L331F	SGCE_uc003unk.2_Missense_Mutation_p.L163F|SGCE_uc003unm.2_Missense_Mutation_p.L331F|SGCE_uc003unn.2_Missense_Mutation_p.L331F|SGCE_uc011kic.1_Missense_Mutation_p.L290F|SGCE_uc011kid.1_Missense_Mutation_p.L367F	NM_003919	NP_003910	O43556	SGCE_HUMAN	sarcoglycan, epsilon isoform 2	331	Cys-rich.|Helical; (Potential).				cell-matrix adhesion|muscle organ development	cytoplasm|cytoskeleton|integral to plasma membrane|sarcoglycan complex|sarcolemma	calcium ion binding			ovary(1)	1	all_cancers(62;8.26e-10)|all_epithelial(64;5.59e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			ATTAGAAAAAGGACCAGTGCC	0.418													10	34					0	0	0.001855	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94881099	94881099	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:94881099G>A	uc003unp.2	+	10	2638	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	PPP1R9A_uc010lfj.2_Missense_Mutation_p.E808K|PPP1R9A_uc011kif.1_Missense_Mutation_p.E786K|PPP1R9A_uc003unq.2_Missense_Mutation_p.E786K|PPP1R9A_uc011kig.1_Missense_Mutation_p.E786K	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	786	Interacts with TGN38 (By similarity).|Potential.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CAAAAGACAGGAAGCAGAAAG	0.338										HNSCC(28;0.073)			11	26					0	0	0.013537	0	0
PDK4	5166	broad.mit.edu	37	7	95217039	95217039	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:95217039C>T	uc003uoa.2	-	8	1190	c.870G>A	c.(868-870)AAG>AAA	p.K290K	PDK4_uc003unz.2_Silent_p.K78K	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	290	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			GAATGGTTACCTTAATGGTAA	0.383													4	33					0	0	0.009096	0	0
TAF6	6878	broad.mit.edu	37	7	99708909	99708909	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:99708909G>A	uc003uti.2	-	10	1017	c.936C>T	c.(934-936)ATC>ATT	p.I312I	TAF6_uc003utg.2_Silent_p.I234I|TAF6_uc003uth.2_Silent_p.I369I|TAF6_uc003utk.2_Silent_p.I312I|TAF6_uc011kji.1_Silent_p.I349I|TAF6_uc003utj.2_Silent_p.I302I|TAF6_uc003utl.2_Silent_p.I312I|TAF6_uc003utm.2_Silent_p.I312I|TAF6_uc003utn.1_RNA	NM_139315	NP_647476	P49848	TAF6_HUMAN	TBP-associated factor 6 isoform alpha	312					negative regulation of cell cycle|negative regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GTCTGCTCACGATGCAGGTCA	0.473													30	54					0	0	0.008361	0	0
AGFG2	3268	broad.mit.edu	37	7	100153358	100153358	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:100153358G>A	uc003uvf.2	+	6	1013	c.877G>A	c.(877-879)GGG>AGG	p.G293R	AGFG2_uc003uvg.1_3'UTR|AGFG2_uc010lgy.2_Silent_p.Q154Q	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	293					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						AACTCCTGCAGGTAAACTCTG	0.507													17	104					0	0	0.006122	0	0
ZAN	7455	broad.mit.edu	37	7	100355938	100355938	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:100355938G>A	uc003uwj.2	+	16	3588	c.3423G>A	c.(3421-3423)AAG>AAA	p.K1141K	ZAN_uc003uwk.2_Silent_p.K1141K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1141	VWFC 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GCCAGCTTAAGAATGGCCAGT	0.617													20	54					0	0	0.008871	0	0
ZAN	7455	broad.mit.edu	37	7	100386863	100386863	+	Silent	SNP	C	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:100386863C>G	uc003uwj.2	+	40	7416	c.7251C>G	c.(7249-7251)GTC>GTG	p.V2417V	ZAN_uc003uwk.2_Silent_p.V2417V|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.V467V	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2417	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AGATGGCCGTCCCCTACAGGC	0.567													5	54					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	7	100551488	100551488	+	RNA	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:100551488C>T	uc003uxk.1	+	1		c.739C>T			uc003uxl.1_5'UTR					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		CACATCATTTCATCTTCTCCC	0.483													23	150					0	0	0.014323	0	0
CUX1	1523	broad.mit.edu	37	7	101747641	101747641	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:101747641G>A	uc003uyx.3	+	6	470	c.432G>A	c.(430-432)GAG>GAA	p.E144E	CUX1_uc003uys.3_Silent_p.E155E|CUX1_uc003uyt.2_Silent_p.E155E|CUX1_uc011kkn.1_Silent_p.E118E|CUX1_uc003uyw.2_Silent_p.E109E|CUX1_uc003uyv.2_Silent_p.E139E|CUX1_uc003uyu.2_Silent_p.E155E	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	144	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CACTTAAAGAGAAAATCCGAG	0.388													18	110					0	0	0.006122	0	0
SLC26A5	375611	broad.mit.edu	37	7	103053498	103053498	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:103053498G>A	uc003vbz.2	-	5	590	c.354C>T	c.(352-354)TAC>TAT	p.Y118Y	SLC26A5_uc003vbt.1_Silent_p.Y118Y|SLC26A5_uc003vbu.1_Silent_p.Y118Y|SLC26A5_uc003vbv.1_Silent_p.Y118Y|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Silent_p.Y118Y|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	118	Helical; Name=2; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						TGATAACAGGGTAAAATGAAG	0.393													8	42					0	0	0.003080	0	0
CDHR3	222256	broad.mit.edu	37	7	105615411	105615411	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:105615411C>T	uc003vdl.3	+	2	276	c.168C>T	c.(166-168)ATC>ATT	p.I56I	CDHR3_uc003vdk.2_5'UTR|CDHR3_uc011kls.1_RNA|CDHR3_uc003vdm.3_Silent_p.I43I|CDHR3_uc011klt.1_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	56	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						CACCTGTGATCCCAGGATTTC	0.458													53	131					0	0	0.014410	0	0
SLC26A4	5172	broad.mit.edu	37	7	107334926	107334926	+	Splice_Site	SNP	G	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:107334926G>T	uc003vep.2	+	11	1565	c.1341_splice	c.e11+1	p.K447_splice	SLC26A4_uc011kmb.1_Splice_Site_p.K34_splice|SLC26A4_uc011kmc.1_Intron|SLC26A4_uc011kmd.1_Splice_Site_p.K16_splice	NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin						regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						CTTGCAGAAGGTATAACCCTG	0.458									Pendred_syndrome				12	58					4.3838e-07	4.52675e-07	0.001855	1	0
C7orf60	154743	broad.mit.edu	37	7	112462082	112462082	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:112462082T>A	uc003vgo.1	-	5	1062	c.935A>T	c.(934-936)CAT>CTT	p.H312L	C7orf60_uc011kms.1_Missense_Mutation_p.H338L	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	312										ovary(2)|skin(1)	3						CAGATGCATATGTGAAAATTT	0.388													15	38					0	0	0.004990	0	0
SLC13A1	6561	broad.mit.edu	37	7	122757627	122757627	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:122757627C>T	uc003vkm.2	-	14	1573	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L	SLC13A1_uc010lks.2_Silent_p.L392L	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	516	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TAGAAGGTATCAGAATATAAA	0.363													4	39					0	0	0.009096	0	0
IQUB	154865	broad.mit.edu	37	7	123150072	123150072	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:123150072G>A	uc003vkn.2	-	3	992	c.415C>T	c.(415-417)CCA>TCA	p.P139S	IQUB_uc003vko.2_Missense_Mutation_p.P139S|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.P139S|IQUB_uc003vkq.2_Missense_Mutation_p.P139S	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	139	Ubiquitin-like.									ovary(3)|large_intestine(1)	4						TGGCCCACTGGAATAAGTACA	0.313													16	147					0	0	0.004990	0	0
HYAL4	23553	broad.mit.edu	37	7	123517036	123517036	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:123517036G>A	uc003vlc.2	+	5	1911	c.1273G>A	c.(1273-1275)GAC>AAC	p.D425N	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	425	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						ATCTGATACAGACCTGGCAGT	0.488													12	91					0	0	0.013537	0	0
PLXNA4	91584	broad.mit.edu	37	7	131865476	131865476	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:131865476G>A	uc003vra.3	-	19	3737	c.3508C>T	c.(3508-3510)CCG>TCG	p.P1170S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1170	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GCCACAGGCGGGATCAGGTTC	0.597													9	45					0	0	0.010729	0	0
SLC35B4	84912	broad.mit.edu	37	7	133986839	133986839	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:133986839G>A	uc003vrn.2	-	5	692	c.368C>T	c.(367-369)TCC>TTC	p.S123F	SLC35B4_uc010lmk.2_5'UTR|SLC35B4_uc010lml.1_Missense_Mutation_p.S55F|SLC35B4_uc003vro.3_Missense_Mutation_p.S123F	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	123	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						CAGGGCAATGGAGGTATATTT	0.343													18	92					0	0	0.007413	0	0
CNOT4	4850	broad.mit.edu	37	7	135106988	135106988	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:135106988G>A	uc003vsv.1	-	3	596	c.289C>T	c.(289-291)CGC>TGC	p.R97C	CNOT4_uc003vss.2_Missense_Mutation_p.R97C|CNOT4_uc011kpz.1_Missense_Mutation_p.R97C|CNOT4_uc003vst.2_Missense_Mutation_p.R97C|CNOT4_uc003vsu.1_Missense_Mutation_p.R97C|CNOT4_uc011kpy.1_Missense_Mutation_p.R97C	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	97	Potential.				nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						AAATGTTTGCGATTTTCTGAT	0.398													14	57					0	0	0.004990	0	0
TRIM24	8805	broad.mit.edu	37	7	138264074	138264074	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:138264074G>A	uc003vuc.2	+	15	2597	c.2382G>A	c.(2380-2382)CAG>CAA	p.Q794Q	TRIM24_uc003vub.2_Silent_p.Q760Q	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	794					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						GACTTCACCAGGACAATTCCT	0.478													29	71					0	0	0.013726	0	0
TBXAS1	6916	broad.mit.edu	37	7	139657436	139657436	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:139657436C>T	uc011kqv.1	+	9	997	c.833C>T	c.(832-834)TCA>TTA	p.S278L	TBXAS1_uc003vvh.2_Missense_Mutation_p.S232L|TBXAS1_uc010lne.2_Missense_Mutation_p.S164L|TBXAS1_uc011kqu.1_Missense_Mutation_p.S183L|TBXAS1_uc003vvi.2_Missense_Mutation_p.S232L|TBXAS1_uc003vvj.2_Missense_Mutation_p.S232L|TBXAS1_uc011kqw.1_Missense_Mutation_p.S212L	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	231	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					TTTCAAGTATCATTTCCATCC	0.453													34	49					0	0	0.004289	0	0
SLC37A3	84255	broad.mit.edu	37	7	140035266	140035266	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:140035266C>T	uc003vvo.2	-	15	1597	c.1431G>A	c.(1429-1431)GTG>GTA	p.V477V	SLC37A3_uc003vvn.2_Silent_p.V55V|SLC37A3_uc003vvp.2_Missense_Mutation_p.E377K|SLC37A3_uc010lnh.2_Silent_p.V461V	NM_207113	NP_996996	Q8NCC5	SPX3_HUMAN	solute carrier family 37 (glycerol-3-phosphate	477					carbohydrate transport|transmembrane transport	integral to membrane				ovary(3)	3	Melanoma(164;0.0142)					ATATTTCCCTCACTATTAATG	0.418													10	69					0	0	0.006214	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				10	46					0	0	0.006214	0	0
PRSS37	136242	broad.mit.edu	37	7	141536960	141536960	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:141536960C>T	uc003vws.1	-	4	891	c.519G>A	c.(517-519)AGG>AGA	p.R173R	PRSS37_uc011krk.1_Silent_p.R160R|PRSS37_uc011krl.1_Silent_p.R172R|PRSS37_uc003vwt.1_Silent_p.R160R	NM_001008270	NP_001008271	A4D1T9	PRS37_HUMAN	protease, serine, 37 precursor	173	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			skin(1)	1						ATAAGGAATTCCTGTGGCTTT	0.453													6	56					0	0	0.001168	0	0
MGAM	8972	broad.mit.edu	37	7	141752214	141752214	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:141752214G>A	uc003vwy.2	+	25	2980	c.2926G>A	c.(2926-2928)GAA>AAA	p.E976K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	976	Lumenal (Potential).|P-type 2.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGCTTCTGCCGAAAACTGCAC	0.453													7	31					0	0	0.003080	0	0
OR6B1	135946	broad.mit.edu	37	7	143701780	143701780	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:143701780G>A	uc003wdt.1	+	1	691	c.691G>A	c.(691-693)GGA>AGA	p.G231R		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					CATGCCCACAGGAAAGCAGAA	0.463													53	142					0	0	0.014410	0	0
OR2A25	392138	broad.mit.edu	37	7	143771756	143771756	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:143771756G>A	uc011ktx.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TGACTTCCTGGATTTTAGGAG	0.458													28	142					0	0	0.008361	0	0
OR2A12	346525	broad.mit.edu	37	7	143792319	143792319	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:143792319G>A	uc011kty.1	+	1	119	c.119G>A	c.(118-120)GGA>GAA	p.G40E		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					ACCCTGATGGGAAATGGGATT	0.493													14	73					0	0	0.004007	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:146997332G>A	uc003weu.1	+	9	1964	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	483	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAGCAGTTCGAACTAATAGT	0.423										HNSCC(39;0.1)			18	70					0	0	0.004990	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183040	147183040	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:147183040C>T	uc003weu.1	+	11	2200	c.1684C>T	c.(1684-1686)CAC>TAC	p.H562Y		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	562	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TGTGCCCAATCACTGTGAGCA	0.458										HNSCC(39;0.1)			41	104					0	0	0.009718	0	0
ZNF282	8427	broad.mit.edu	37	7	148892733	148892733	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:148892733C>T	uc003wfm.2	+	1	157	c.52C>T	c.(52-54)CTG>TTG	p.L18L	ZNF282_uc011kun.1_Silent_p.L18L|ZNF282_uc003wfn.2_5'Flank|ZNF282_uc003wfo.2_5'Flank	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	18					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		CATCCAGGGCCTGGGGCTGGA	0.687													7	27					0	0	0.003080	0	0
TMEM176B	28959	broad.mit.edu	37	7	150489193	150489193	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:150489193G>A	uc003wht.3	-	6	837	c.671C>T	c.(670-672)TCC>TTC	p.S224F	TMEM176B_uc003whu.3_Missense_Mutation_p.S224F|TMEM176B_uc003whv.3_Missense_Mutation_p.S187F|TMEM176B_uc003whw.3_Missense_Mutation_p.S224F	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	224	Helical; (Potential).				cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TACTCCCAAGGAAACCAAGGA	0.547													15	49					0	0	0.004007	0	0
WDR60	55112	broad.mit.edu	37	7	158663875	158663875	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr7:158663875G>A	uc003woe.3	+	3	270	c.112G>A	c.(112-114)GAG>AAG	p.E38K		NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	38										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		AAAGCACAGAGAGAAGAAGCT	0.527													22	45					0	0	0.014323	0	0
CSMD1	64478	broad.mit.edu	37	8	2830798	2830798	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:2830798C>T	uc011kwk.1	-	57	9157	c.8767G>A	c.(8767-8769)GAT>AAT	p.D2923N	CSMD1_uc011kwj.1_Missense_Mutation_p.D2252N|CSMD1_uc010lrg.2_Missense_Mutation_p.D933N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2923	Extracellular (Potential).|Sushi 22.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTCCCCGGATCACCACAGAAT	0.463													26	163					0	0	0.005443	0	0
CSMD1	64478	broad.mit.edu	37	8	3205627	3205627	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:3205627G>A	uc011kwk.1	-	22	3754	c.3364C>T	c.(3364-3366)CCA>TCA	p.P1122S	CSMD1_uc011kwj.1_Missense_Mutation_p.P514S|CSMD1_uc003wqe.2_Missense_Mutation_p.P278S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1122	Extracellular (Potential).|CUB 7.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TAATTGGATGGAAAATTTGGA	0.393													7	23					0	0	0.003080	0	0
CSMD1	64478	broad.mit.edu	37	8	3263610	3263610	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:3263610G>A	uc011kwk.1	-	15	2598	c.2208C>T	c.(2206-2208)TCC>TCT	p.S736S	CSMD1_uc011kwj.1_Silent_p.S128S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	736	Sushi 4.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGCAGGTAATGGACTCGGATC	0.547													8	43					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	3263621	3263621	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:3263621C>T	uc011kwk.1	-	15	2587	c.2197G>A	c.(2197-2199)GGA>AGA	p.G733R	CSMD1_uc011kwj.1_Missense_Mutation_p.G125R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	733	Sushi 4.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GACTCGGATCCCTGGGTCTTG	0.562													7	40					0	0	0.001984	0	0
DEFA4	1669	broad.mit.edu	37	8	6794277	6794277	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:6794277C>T	uc003wqu.1	-	2	196	c.145G>A	c.(145-147)GAT>AAT	p.D49N		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	49					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GAGCTTTTATCCCATGCAAAG	0.413													13	63					0	0	0.002450	0	0
PRSS55	203074	broad.mit.edu	37	8	10390447	10390447	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:10390447G>A	uc003wta.2	+	4	645	c.630G>A	c.(628-630)ATG>ATA	p.M210I	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	210	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CGGATCTGATGAAAGCGCCAA	0.478													16	58					0	0	0.006122	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17067464	17067464	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:17067464C>T	uc003wxe.2	+	9	1151	c.754C>T	c.(754-756)CGA>TGA	p.R252*		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	252						integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		TCCAGTATTTCGACATGGAAC	0.343													7	10					0	0	0.003080	0	0
PIWIL2	55124	broad.mit.edu	37	8	22140749	22140749	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:22140749G>A	uc003xbn.2	+	5	776	c.628G>A	c.(628-630)GAA>AAA	p.E210K	PIWIL2_uc011kzf.1_Missense_Mutation_p.E210K|PIWIL2_uc010ltv.2_Missense_Mutation_p.E210K	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	210					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GGAACACAAGGAAAAGTAAGT	0.522													7	31					0	0	0.001984	0	0
STC1	6781	broad.mit.edu	37	8	23702445	23702445	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:23702445G>A	uc003xdw.1	-	4	866	c.582C>T	c.(580-582)TTC>TTT	p.F194F		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	194					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		GCAGGATGTGGAAGAGGCTGG	0.532													14	74					0	0	0.003163	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24259525	24259525	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:24259525C>T	uc003xdz.2	+	12	1460	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	ADAMDEC1_uc010lub.2_Missense_Mutation_p.P335S|ADAMDEC1_uc011lab.1_Missense_Mutation_p.P335S	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	414					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		AGCACCTATTCCTACAAATAT	0.393													5	50					0	0	0.000602	0	0
PNMA2	10687	broad.mit.edu	37	8	26366158	26366158	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:26366158G>A	uc003xez.2	-	3	884	c.114C>T	c.(112-114)GTC>GTT	p.V38V		NM_007257	NP_009188	Q9UL42	PNMA2_HUMAN	paraneoplastic antigen MA2	38					apoptosis	nucleolus	protein binding				0		all_cancers(63;0.109)|Ovarian(32;2.61e-05)|all_epithelial(46;0.105)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0196)|Epithelial(17;3.13e-11)|Colorectal(74;0.123)		tctcctgaaggacctcctgaa	0													18	80					0	0	0.007413	0	0
GSR	2936	broad.mit.edu	37	8	30538528	30538528	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:30538528C>T	uc003xih.1	-	12	1403	c.1312G>A	c.(1312-1314)GAA>AAA	p.E438K		NM_000637	NP_000628	P00390	GSHR_HUMAN	glutathione reductase precursor	438					cell redox homeostasis|nucleobase, nucleoside and nucleotide interconversion	cytosol|mitochondrion	electron carrier activity|glutathione-disulfide reductase activity			ovary(2)|pancreas(2)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(542;0.105)|Kidney(114;0.125)	Carmustine(DB00262)|Glutathione(DB00143)|NADH(DB00157)	TTCACATTTTCTATTCCATAT	0.348													13	68					0	0	0.013537	0	0
DUSP26	78986	broad.mit.edu	37	8	33449668	33449668	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:33449668G>A	uc003xjp.2	-	4	832	c.499C>T	c.(499-501)CTC>TTC	p.L167F	DUSP26_uc003xjq.2_Missense_Mutation_p.L167F	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	167	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		TACAGCATGAGGTAGGCCAGT	0.587													9	26					0	0	0.004482	0	0
PROSC	11212	broad.mit.edu	37	8	37633494	37633494	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:37633494T>C	uc003xkh.2	+	7	733	c.656T>C	c.(655-657)GTT>GCT	p.V219A		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	219							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	GCTGACCAGGTTGAGCTGAGC	0.567													22	121					0	0	0.003330	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38196056	38196056	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:38196056G>A	uc003xli.2	-	3	1263	c.745C>T	c.(745-747)CCA>TCA	p.P249S	WHSC1L1_uc011lbm.1_Missense_Mutation_p.P249S|WHSC1L1_uc010lwe.2_Missense_Mutation_p.P249S|WHSC1L1_uc003xlj.2_Missense_Mutation_p.P249S	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	249					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			CAACTTACTGGGGCTTCCTCT	0.373			T	NUP98	AML								16	68					0	0	0.004990	0	0
IDO2	169355	broad.mit.edu	37	8	39872851	39872851	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:39872851G>A	uc010lwy.1	+	11	1235	c.993G>A	c.(991-993)AGG>AGA	p.R331R	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Silent_p.R72R|IDO2_uc003xnp.1_Silent_p.R72R	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	318					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CTTCCCTGAGGGACTACATCC	0.498													8	36					0	0	0.004482	0	0
ANK1	286	broad.mit.edu	37	8	41571742	41571742	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:41571742G>A	uc003xok.2	-	16	1816	c.1732C>T	c.(1732-1734)CAT>TAT	p.H578Y	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.H578Y|ANK1_uc003xoj.2_Missense_Mutation_p.H578Y|ANK1_uc003xol.2_Missense_Mutation_p.H578Y|ANK1_uc003xom.2_Missense_Mutation_p.H611Y	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	578	ANK 17.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TTGTTGTGATGGACGGCCACG	0.657													8	39					0	0	0.006214	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611307	42611307	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:42611307G>A	uc003xpj.2	-	5	1081	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	CHRNA6_uc011lcw.1_Silent_p.F330F	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	345	Cytoplasmic.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GCAGCTTCAGGAAAACTGTCT	0.572													11	62					0	0	0.013537	0	0
PXDNL	137902	broad.mit.edu	37	8	52320904	52320904	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:52320904C>T	uc003xqu.3	-	17	3381	c.3280G>A	c.(3280-3282)GAA>AAA	p.E1094K	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	1094					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ATCCCACCTTCCTTGATTATT	0.532													13	60					0	0	0.002450	0	0
RP1	6101	broad.mit.edu	37	8	55534821	55534821	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:55534821G>A	uc003xsd.1	+	3	908	c.760G>A	c.(760-762)GGA>AGA	p.G254R	RP1_uc011ldy.1_Missense_Mutation_p.G254R	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	254					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTACCCCAAGGGAAATGCAAA	0.423													11	44					0	0	0.002450	0	0
RP1	6101	broad.mit.edu	37	8	55540511	55540511	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:55540511G>A	uc003xsd.1	+	4	4217	c.4069G>A	c.(4069-4071)GAT>AAT	p.D1357N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1357					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGATAACTTGGATTCAACTGA	0.353													7	40					0	0	0.006214	0	0
XKR4	114786	broad.mit.edu	37	8	56436718	56436718	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:56436718C>T	uc003xsf.2	+	3	1917	c.1885C>T	c.(1885-1887)CCT>TCT	p.P629S		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	629						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TTCCCCATCTCCTCCAAGGCT	0.453													12	46					0	0	0.001855	0	0
CLVS1	157807	broad.mit.edu	37	8	62289219	62289219	+	Missense_Mutation	SNP	G	A	A	rs143211270	by1000genomes	TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:62289219G>A	uc003xuh.2	+	3	835	c.511G>A	c.(511-513)GAA>AAA	p.E171K	CLVS1_uc003xug.2_3'UTR|CLVS1_uc003xui.2_RNA|CLVS1_uc010lyp.2_Missense_Mutation_p.E171K	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	171	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity	p.E171K(1)		skin(4)|ovary(1)	5						AGTCCTAATCGAAGATCCGGA	0.438													7	71					0	0	0.003080	0	0
XKR9	389668	broad.mit.edu	37	8	71646537	71646537	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:71646537C>T	uc003xyq.2	+	5	1534	c.1000C>T	c.(1000-1002)CTT>TTT	p.L334F	XKR9_uc010lze.2_Missense_Mutation_p.L334F|XKR9_uc010lzd.2_Missense_Mutation_p.L202F	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	334	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			TCTTGGAATTCTTTTTCTTAT	0.323													6	23					0	0	0.001168	0	0
HNF4G	3174	broad.mit.edu	37	8	76456189	76456189	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:76456189C>T	uc003yaq.2	+	3	391	c.121C>T	c.(121-123)CGT>TGT	p.R41C	HNF4G_uc003yap.1_Missense_Mutation_p.R41C|HNF4G_uc003yar.2_Missense_Mutation_p.R78C	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	41	Nuclear receptor.				endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ACGCAGCATTCGTAAGAGTCA	0.438													7	53					0	0	0.003080	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767784	77767784	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:77767784A>G	uc003yav.2	+	10	8879	c.8492A>G	c.(8491-8493)AAT>AGT	p.N2831S	ZFHX4_uc003yau.1_Missense_Mutation_p.N2876S|ZFHX4_uc003yaw.1_Missense_Mutation_p.N2831S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2831						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATCCATTTCAATGACAAAGAT	0.512										HNSCC(33;0.089)			9	34					0	0	0.010729	0	0
CA1	759	broad.mit.edu	37	8	86250493	86250493	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:86250493C>T	uc003ydh.2	-	4	423	c.223G>A	c.(223-225)GAT>AAT	p.D75N	CA13_uc003ydf.1_Intron|CA1_uc010mae.1_Missense_Mutation_p.D75N|CA1_uc003ydi.2_Missense_Mutation_p.D75N	NM_001738	NP_001729	P00915	CAH1_HUMAN	carbonic anhydrase I	75				DN -> ND (in Ref. 4; AA sequence and 5; AA sequence).	one-carbon metabolic process	Golgi apparatus	carbonate dehydratase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(136;4.89e-06)			Acetazolamide(DB00819)|Amlodipine(DB00381)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dichlorphenamide(DB01144)|Ethinamate(DB01031)|Ethoxzolamide(DB00311)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Levetiracetam(DB01202)|Methazolamide(DB00703)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)|Verapamil(DB00661)|Zonisamide(DB00909)	GATCGGTTATCGTTGTCCTCA	0.398													31	153					0	0	0.010818	0	0
KIAA1429	25962	broad.mit.edu	37	8	95539567	95539567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:95539567G>A	uc003ygo.1	-	8	918	c.905C>T	c.(904-906)TCC>TTC	p.S302F	KIAA1429_uc003ygp.2_Missense_Mutation_p.S302F|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	302	Glu-rich.				mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			TTCATCACTGGAAATTTGTTC	0.318													6	16					0	0	0.001168	0	0
MTERFD1	51001	broad.mit.edu	37	8	97270800	97270800	+	Missense_Mutation	SNP	C	T	T	rs148966759		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:97270800C>T	uc003yhs.1	-	2	197	c.119G>A	c.(118-120)GGC>GAC	p.G40D	MTERFD1_uc003yhr.1_5'Flank|MTERFD1_uc010mbd.1_Missense_Mutation_p.G40D	NM_015942	NP_057026	Q96E29	MTER1_HUMAN	MTERF domain containing 1 precursor	40					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion	transcription regulatory region DNA binding			ovary(1)	1	Breast(36;5.16e-05)					AGCAGAAAAGCCATGTAACAG	0.428													18	99					0	0	0.006122	0	0
RNF19A	25897	broad.mit.edu	37	8	101276405	101276405	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:101276405A>G	uc003yjj.1	-	8	1642	c.1325T>C	c.(1324-1326)ATG>ACG	p.M442T	RNF19A_uc003yjk.1_Missense_Mutation_p.M442T	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	442	Helical; (Potential).				microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			ATAAGCTAACATAATAGGAAC	0.358													4	21					0	0	0.000602	0	0
TMEM74	157753	broad.mit.edu	37	8	109796614	109796614	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:109796614G>A	uc003ymy.1	-	2	819	c.714C>T	c.(712-714)CTC>CTT	p.L238L	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	238	Helical; (Potential).				autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			CCAGCGTGAGGAGGCAGAGCC	0.602													9	34					0	0	0.004482	0	0
FER1L6	654463	broad.mit.edu	37	8	125076659	125076659	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:125076659C>T	uc003yqw.2	+	26	3606	c.3400C>T	c.(3400-3402)CAC>TAC	p.H1134Y	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1134	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCCAGCAGATCACATTTATGT	0.572													28	125					0	0	0.009535	0	0
OC90	729330	broad.mit.edu	37	8	133044155	133044155	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:133044155C>T	uc003ytg.2	-	11	1004	c.1004G>A	c.(1003-1005)AGA>AAA	p.R335K	OC90_uc011lix.1_Missense_Mutation_p.R335K	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	351	Phospholipase A2-like 2.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			TGGCTCGCCTCTTCCTTCTTG	0.547													5	40					0	0	0.000602	0	0
KCNQ3	3786	broad.mit.edu	37	8	133175718	133175718	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:133175718G>A	uc003ytj.2	-	9	1484	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F	KCNQ3_uc010mdt.2_Missense_Mutation_p.S420F	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	420					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			AACTTACCTGGATGCTGCCTC	0.453													7	50					0	0	0.003080	0	0
ZFAT	57623	broad.mit.edu	37	8	135614828	135614828	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:135614828G>A	uc003yup.2	-	6	1309	c.1134C>T	c.(1132-1134)GAC>GAT	p.D378D	ZFAT_uc003yun.2_Silent_p.D366D|ZFAT_uc003yuo.2_Silent_p.D366D|ZFAT_uc010meh.2_Silent_p.D366D|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.D366D|ZFAT_uc010mej.2_Silent_p.D316D|ZFAT_uc003yur.2_Silent_p.D366D	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			TGTCCTGTGGGTCATGCGCGT	0.557													18	61					0	0	0.010504	0	0
FAM135B	51059	broad.mit.edu	37	8	139164014	139164014	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:139164014C>T	uc003yuy.2	-	13	2875	c.2704G>A	c.(2704-2706)GAA>AAA	p.E902K	FAM135B_uc003yux.2_Missense_Mutation_p.E803K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E464K|FAM135B_uc003yvb.2_Missense_Mutation_p.E464K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	902										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTTGGGGTTTCCTCAAGTGCT	0.473										HNSCC(54;0.14)			22	82					0	0	0.003954	0	0
COL22A1	169044	broad.mit.edu	37	8	139833595	139833595	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:139833595C>T	uc003yvd.2	-	7	1476	c.1029G>A	c.(1027-1029)ATG>ATA	p.M343I		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	343	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CAGCATCTTTCATGGCACCCA	0.572										HNSCC(7;0.00092)			24	132					0	0	0.004656	0	0
EPPK1	83481	broad.mit.edu	37	8	144940581	144940581	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:144940581G>A	uc003zaa.1	-	2	14864	c.14851C>T	c.(14851-14853)CTG>TTG	p.L4951L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4951	Plectin 62.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCACCGACAGCCTCAGGTTG	0.736													9	92					0	0	0.004482	0	0
EPPK1	83481	broad.mit.edu	37	8	144941969	144941969	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:144941969C>T	uc003zaa.1	-	1	5466	c.5453G>A	c.(5452-5454)GGA>GAA	p.G1818E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1818						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACTCTGGGCTCCATACTCCTG	0.547													45	141					0	0	0.010771	0	0
EPPK1	83481	broad.mit.edu	37	8	144945289	144945289	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:144945289G>A	uc003zaa.1	-	1	2146	c.2133C>T	c.(2131-2133)ATC>ATT	p.I711I		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	711	Plectin 13.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCTCCCGGACGATGAGGCCCT	0.687													16	69					0	0	0.004990	0	0
DOCK8	81704	broad.mit.edu	37	9	334291	334291	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:334291C>T	uc003zgf.2	+	11	1304	c.1192C>T	c.(1192-1194)CGG>TGG	p.R398W	DOCK8_uc011lls.1_Missense_Mutation_p.R398W|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Missense_Mutation_p.R330W|DOCK8_uc003zgg.2_Missense_Mutation_p.R330W|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	398	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GGGGAAATACCGGATGCCCTT	0.443													9	70					0	0	0.010729	0	0
SH3GL2	6456	broad.mit.edu	37	9	17787503	17787503	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:17787503G>A	uc003zna.2	+	5	745	c.457G>A	c.(457-459)GAA>AAA	p.E153K	SH3GL2_uc011lmx.1_Missense_Mutation_p.E118K|SH3GL2_uc011lmy.1_Missense_Mutation_p.E106K	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	153	BAR.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		AGATCTTAGGGAAATTCAAGT	0.403													6	39					0	0	0.001168	0	0
SH3GL2	6456	broad.mit.edu	37	9	17791333	17791333	+	Splice_Site	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:17791333G>A	uc003zna.2	+	7	1016	c.728_splice	c.e7+1	p.R243_splice	SH3GL2_uc011lmy.1_Splice_Site_p.R196_splice	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2						axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding			skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		TGGAAGAAAGGTATTCTACAG	0.428													18	85					0	0	0.007413	0	0
IFNA21	3452	broad.mit.edu	37	9	21166419	21166419	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:21166419C>T	uc003zom.2	-	1	241	c.193G>A	c.(193-195)GAG>AAG	p.E65K		NM_002175	NP_002166	P01568	IFN21_HUMAN	interferon, alpha 21 precursor	65					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(5;1.93e-187)|Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CCATCAAACTCCTCCTGGGGG	0.507													30	122					0	0	0.010818	0	0
FANCG	2189	broad.mit.edu	37	9	35079438	35079438	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:35079438C>T	uc003zwb.1	-	1	576	c.84G>A	c.(82-84)AAG>AAA	p.K28K	FANCG_uc003zwa.1_5'Flank|FANCG_uc010mkj.1_5'UTR|FANCG_uc011lot.1_Silent_p.K28K	NM_004629	NP_004620	O15287	FANCG_HUMAN	Fanconi anemia, complementation group G	28					cell cycle checkpoint|DNA repair|mitochondrion organization	mitochondrion|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|large_intestine(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			ACCGTGTTACCTTGGCCTGTC	0.612			Mis|N|F|S			AML|leukemia		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				23	83					0	0	0.003330	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39171438	39171438	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:39171438G>A	uc004abi.2	-	8	1500	c.1261C>T	c.(1261-1263)CTC>TTC	p.L421F	CNTNAP3_uc004abj.2_Missense_Mutation_p.L421F|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.L421F|CNTNAP3_uc011lqs.1_Missense_Mutation_p.L421F|CNTNAP3_uc004abl.1_Missense_Mutation_p.L333F	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	421	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTAAGAAAGAGGACGAAACTC	0.483													15	84					0	0	0.002450	0	0
TRPM3	80036	broad.mit.edu	37	9	73458035	73458035	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:73458035G>A	uc004aid.2	-	5	929	c.685C>T	c.(685-687)CGT>TGT	p.R229C	TRPM3_uc004ahu.2_Missense_Mutation_p.R59C|TRPM3_uc004ahv.2_Missense_Mutation_p.R59C|TRPM3_uc004ahw.2_Missense_Mutation_p.R76C|TRPM3_uc004ahx.2_Missense_Mutation_p.R76C|TRPM3_uc004ahy.2_Missense_Mutation_p.R76C|TRPM3_uc004ahz.2_Missense_Mutation_p.R76C|TRPM3_uc004aia.2_Missense_Mutation_p.R76C|TRPM3_uc004aib.2_Missense_Mutation_p.R76C|TRPM3_uc004aic.2_Missense_Mutation_p.R229C|TRPM3_uc010mor.2_Missense_Mutation_p.R229C|TRPM3_uc004aie.2_Missense_Mutation_p.R76C|TRPM3_uc004aif.2_Missense_Mutation_p.R76C|TRPM3_uc004aig.2_Missense_Mutation_p.R76C|TRPM3_uc004aii.2_Missense_Mutation_p.R231C	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	229	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CCAACATGACGAATAACACCT	0.403													4	21					0	0	0.000602	0	0
TRPM6	140803	broad.mit.edu	37	9	77377921	77377921	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:77377921C>T	uc004ajl.1	-	26	3904	c.3666G>A	c.(3664-3666)CTG>CTA	p.L1222L	TRPM6_uc004ajk.1_Silent_p.L1217L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Silent_p.L178L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1222	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AAAGGACTTTCAGGGTATCCA	0.473													14	68					0	0	0.006122	0	0
GCNT1	2650	broad.mit.edu	37	9	79117943	79117943	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:79117943C>T	uc010mpf.2	+	3	987	c.646C>T	c.(646-648)CTT>TTT	p.L216F	GCNT1_uc010mpg.2_Missense_Mutation_p.L216F|GCNT1_uc010mph.2_Missense_Mutation_p.L216F|GCNT1_uc004akf.3_Missense_Mutation_p.L216F|GCNT1_uc010mpi.2_Missense_Mutation_p.L216F|GCNT1_uc004akh.3_Missense_Mutation_p.L216F	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	216	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						CTTGATAAATCTTTGTGGTAT	0.443													15	39					0	0	0.002450	0	0
C9orf79	286234	broad.mit.edu	37	9	90500082	90500082	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:90500082C>T	uc004app.3	+	4	715	c.680C>T	c.(679-681)CCC>CTC	p.P227L	C9orf79_uc004apo.1_Missense_Mutation_p.P39L	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	227	Pro-rich.					integral to membrane				ovary(3)	3						CCACCAGAGCCCTTGCTTCCC	0.627													41	130					0	0	0.011902	0	0
ROR2	4920	broad.mit.edu	37	9	94485998	94485998	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:94485998C>T	uc004arj.1	-	9	2977	c.2778G>A	c.(2776-2778)CTG>CTA	p.L926L	ROR2_uc004ari.1_Intron	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	926	Cytoplasmic (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CACAGTCCCCCAGCAGCTCAG	0.647													13	86					0	0	0.013537	0	0
C9orf3	84909	broad.mit.edu	37	9	97718274	97718274	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:97718274C>T	uc004ava.2	+	8	1984	c.1849C>T	c.(1849-1851)CAT>TAT	p.H617Y	C9orf3_uc004auy.2_Missense_Mutation_p.H518Y|C9orf3_uc004auz.1_Missense_Mutation_p.H518Y|C9orf3_uc004avc.2_Missense_Mutation_p.H72Y	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	617					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		GCACACATTTCATGGACAGCT	0.393													13	86					0	0	0.003163	0	0
HSD17B3	3293	broad.mit.edu	37	9	99013729	99013729	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:99013729G>A	uc004awa.1	-	5	472	c.424C>T	c.(424-426)CAT>TAT	p.H142Y	HSD17B3_uc010msc.1_Missense_Mutation_p.H142Y	NM_000197	NP_000188	P37058	DHB3_HUMAN	estradiol 17 beta-dehydrogenase 3	142					androgen biosynthetic process|male genitalia development	endoplasmic reticulum membrane|microsome	binding|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity				0		Acute lymphoblastic leukemia(62;0.0171)|all_hematologic(171;0.214)			NADH(DB00157)	TTCAGGAAATGGCTTGGGAGA	0.463													11	49					0	0	0.008291	0	0
ALDOB	229	broad.mit.edu	37	9	104190787	104190787	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:104190787G>A	uc004bbk.2	-	4	425	c.343C>T	c.(343-345)CCT>TCT	p.P115S		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	115					fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CCTGCAAGAGGAGCACCTCCT	0.403													23	80					0	0	0.003330	0	0
OR13C5	138799	broad.mit.edu	37	9	107361077	107361077	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:107361077G>A	uc011lvp.1	-	1	618	c.618C>T	c.(616-618)TTC>TTT	p.F206F		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GTGTCAATAGGAACAATGTTG	0.398													15	79					0	0	0.002450	0	0
OR13C2	392376	broad.mit.edu	37	9	107367196	107367196	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:107367196G>A	uc011lvq.1	-	1	713	c.713C>T	c.(712-714)TCC>TTC	p.S238F		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	238	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGGTAGAGGAAGCTTTGCT	0.398													14	69					0	0	0.004007	0	0
PTPN3	5774	broad.mit.edu	37	9	112144595	112144596	+	Silent	DNP	GG	AA	AA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:112144595_112144596GG>AA	uc004bed.2	-	24	2626_2627	c.2514_2515CC>TT	c.(2512-2517)GTCCTA>GTTTTA	p.838_839VL>VL	PTPN3_uc004beb.2_Silent_p.707_708VL>VL|PTPN3_uc004bec.2_Silent_p.662_663VL>VL|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Silent_p.793_794VL>VL|PTPN3_uc011lwh.1_Silent_p.684_685VL>VL|PTPN3_uc011lwd.1_Silent_p.306_307VL>VL|PTPN3_uc011lwe.1_Silent_p.551_552VL>VL|PTPN3_uc011lwf.1_Silent_p.506_507VL>VL	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	838_839	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						CAGTGAACTAGGACGGGCTCGC	0.545													5	17					0	0	0.004672	0	0
ZNF618	114991	broad.mit.edu	37	9	116812241	116812241	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:116812241C>T	uc004bid.2	+	15	2758	c.2659C>T	c.(2659-2661)CCT>TCT	p.P887S	ZNF618_uc004bic.2_Missense_Mutation_p.P794S|ZNF618_uc011lxi.1_Missense_Mutation_p.P854S|ZNF618_uc011lxj.1_Missense_Mutation_p.P855S|ZNF618_uc010mvb.2_Missense_Mutation_p.P477S	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	887					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCAGGCTACCCCTGATCTCTT	0.592													13	75					0	0	0.013537	0	0
ORM1	5004	broad.mit.edu	37	9	117086350	117086350	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:117086350G>A	uc004bik.3	+	3	421	c.310G>A	c.(310-312)GGG>AGG	p.G104R	ORM1_uc011lxo.1_Missense_Mutation_p.G104R	NM_000607	NP_000598	P02763	A1AG1_HUMAN	orosomucoid 1 precursor	104					acute-phase response|regulation of immune system process|transport	extracellular space	protein binding				0		Myeloproliferative disorder(63;0.163)			Acenocoumarol(DB01418)|Alfentanil(DB00802)|Aprindine(DB01429)|Disopyramide(DB00280)|Penbutolol(DB01359)|Phenprocoumon(DB00946)|Quinidine(DB00908)|Tamsulosin(DB00706)	GCGGGAAAATGGGACCATCTC	0.542													14	65					0	0	0.003163	0	0
ASTN2	23245	broad.mit.edu	37	9	119770528	119770528	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:119770528G>A	uc004bjs.1	-	7	1535	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	ASTN2_uc004bjr.1_Silent_p.F478F|ASTN2_uc004bjt.1_Silent_p.F427F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	478	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CACTCACCACGAAGCTGCTTC	0.502													8	47					0	0	0.006214	0	0
DENND1A	57706	broad.mit.edu	37	9	126319965	126319965	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:126319965G>A	uc004bnz.1	-	13	1110	c.877C>T	c.(877-879)CTG>TTG	p.L293L	DENND1A_uc011lzl.1_Intron|DENND1A_uc004bny.1_Silent_p.L110L|DENND1A_uc011lzm.1_Silent_p.L261L|DENND1A_uc004boa.1_Silent_p.L293L|DENND1A_uc004bob.1_Silent_p.L263L|DENND1A_uc004boc.2_Silent_p.L261L	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	293						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CTGTTCTTCAGGGAAGAGATC	0.537													7	22					0	0	0.003080	0	0
NR6A1	2649	broad.mit.edu	37	9	127289093	127289093	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:127289093T>C	uc004bor.1	-	8	1344	c.1166A>G	c.(1165-1167)TAT>TGT	p.Y389C	NR6A1_uc004boq.1_Missense_Mutation_p.Y384C|NR6A1_uc010mwq.1_Missense_Mutation_p.Y385C	NM_033334	NP_201591	Q15406	NR6A1_HUMAN	nuclear receptor subfamily 6, group A, member 1	389					cell proliferation|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|spermatogenesis	transcription factor complex	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CATGCAAGCATACTCCTCGTT	0.498													26	92					0	0	0.004656	0	0
FAM125B	89853	broad.mit.edu	37	9	129154425	129154425	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:129154425C>T	uc004bqh.1	+	5	571	c.490C>T	c.(490-492)CGG>TGG	p.R164W	FAM125B_uc004bqg.1_Missense_Mutation_p.R164W|FAM125B_uc011lzy.1_Missense_Mutation_p.R149W|FAM125B_uc010mxd.2_Missense_Mutation_p.R157W|FAM125B_uc011lzz.1_Missense_Mutation_p.R157W	NM_033446	NP_258257	Q9H7P6	F125B_HUMAN	hypothetical protein LOC89853 isoform 1	164	MABP.				protein transport	late endosome membrane					0						TTGTGACATTCGGATCATGGG	0.488													26	101					0	0	0.004656	0	0
NUP214	8021	broad.mit.edu	37	9	134072836	134072836	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:134072836G>A	uc004cag.2	+	29	4066	c.3955G>A	c.(3955-3957)GAG>AAG	p.E1319K	NUP214_uc004cah.2_Missense_Mutation_p.E1309K|NUP214_uc004cai.2_Missense_Mutation_p.E749K|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.E145K|NUP214_uc011mcf.1_Missense_Mutation_p.E96K|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1319	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CAAGCTGGGAGAGCTTCTGTT	0.522			T	DEK|SET|ABL1	AML|T-ALL								16	110					0	0	0.006122	0	0
PNPLA7	375775	broad.mit.edu	37	9	140379138	140379138	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:140379138G>A	uc004cnf.2	-	20	2510	c.2173C>T	c.(2173-2175)CCG>TCG	p.P725S	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_5'UTR|PNPLA7_uc004cne.1_5'UTR|PNPLA7_uc011mfa.1_Missense_Mutation_p.P133S|PNPLA7_uc010ncj.1_Missense_Mutation_p.P750S	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	725					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TTGACAGCCGGGTTCCCCAAG	0.662													4	18					0	0	0.009096	0	0
ZMYND19	116225	broad.mit.edu	37	9	140481550	140481550	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:140481550G>A	uc004cno.1	-	4	450	c.228C>T	c.(226-228)CAC>CAT	p.H76H		NM_138462	NP_612471	Q96E35	ZMY19_HUMAN	zinc finger, MYND domain containing 19	76						Golgi apparatus|plasma membrane	zinc ion binding			skin(1)	1	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000275)|Epithelial(140;0.00047)		CGCCCCCCCGGTGCCGCTCCC	0.632													23	93					0	0	0.004656	0	0
CACNA1B	774	broad.mit.edu	37	9	140990947	140990947	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr9:140990947C>T	uc004cog.2	+	36	5251	c.5106C>T	c.(5104-5106)CTC>CTT	p.L1702L	CACNA1B_uc004coi.2_Silent_p.L914L|CACNA1B_uc004cok.1_RNA|CACNA1B_uc010ncp.1_Intron	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1702	Helical; Name=S6 of repeat IV; (Potential).|IV.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	TGTTGAACCTCTTTGTGGCTG	0.567													17	80					0	0	0.007413	0	0
IL3RA	3563	broad.mit.edu	37	X	1464208	1464208	+	Splice_Site	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:1464208G>A	uc004cps.2	+	3	414	c.65_splice	c.e3-1	p.D22_splice	IL3RA_uc011mhd.1_Intron	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor							integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	CACCGTTTTAGATCCAAACCC	0.428													47	171					0	0	0.014410	0	0
MXRA5	25878	broad.mit.edu	37	X	3241355	3241355	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:3241355G>A	uc004crg.3	-	5	2528	c.2371C>T	c.(2371-2373)CGT>TGT	p.R791C		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	791						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTTTTCCCACGGACTTTGGCT	0.453													17	37					0	0	0.004990	0	0
BMX	660	broad.mit.edu	37	X	15574231	15574231	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:15574231G>A	uc004cww.2	+	19	2177	c.1989G>A	c.(1987-1989)CTG>CTA	p.L663L	BMX_uc004cwx.3_Silent_p.L663L|BMX_uc004cwy.3_Silent_p.L663L	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	663	Protein kinase.				cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					AGCAACTCCTGTCTTCCATTG	0.358													37	57					0	0	0.013114	0	0
PPEF1	5475	broad.mit.edu	37	X	18748339	18748339	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:18748339T>C	uc004cyq.2	+	5	568	c.87T>C	c.(85-87)GGT>GGC	p.G29G	PPEF1_uc004cyp.2_Silent_p.G29G|PPEF1_uc004cyr.2_Silent_p.G29G|PPEF1_uc004cys.2_Silent_p.G29G|PPEF1_uc011mja.1_Intron|PPEF1_uc011mjb.1_5'UTR	NM_006240	NP_006231	O14829	PPE1_HUMAN	protein phosphatase with EF hand calcium-binding	29	IQ.				detection of stimulus involved in sensory perception|protein dephosphorylation		calcium ion binding|iron ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity				0	Hepatocellular(33;0.183)					GGTACCGAGGTTACAAAGCTC	0.463													16	29					0	0	0.003163	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237634	30237634	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:30237634G>A	uc004dbz.2	+	2	1040	c.937G>A	c.(937-939)GAT>AAT	p.D313N		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	313							protein binding			ovary(1)	1						AGCTTTGAAAGATGAAGAGAA	0.488													13	14					0	0	0.001855	0	0
CCNB3	85417	broad.mit.edu	37	X	50094333	50094333	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:50094333G>A	uc004dox.3	+	12	4352	c.4054G>A	c.(4054-4056)GAT>AAT	p.D1352N	CCNB3_uc004doy.2_Missense_Mutation_p.D1352N|CCNB3_uc004doz.2_Missense_Mutation_p.D248N|CCNB3_uc010njq.2_Missense_Mutation_p.D244N|CCNB3_uc004dpa.2_Missense_Mutation_p.D191N	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1352					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					CAGTTCTTACGATAGTCTCAA	0.453													36	61					0	0	0.003755	0	0
BMP15	9210	broad.mit.edu	37	X	50659565	50659565	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:50659565G>A	uc011mnw.1	+	2	1137	c.1137G>A	c.(1135-1137)AAG>AAA	p.K379K		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	379					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					TTTTGTACAAGGAGTATGAGG	0.458													9	30					0	0	0.008291	0	0
KDM5C	8242	broad.mit.edu	37	X	53250049	53250049	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:53250049G>A	uc004drz.2	-	2	733	c.200C>T	c.(199-201)CCC>CTC	p.P67L	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Intron|KDM5C_uc004dsa.2_Missense_Mutation_p.P67L	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	67					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTGGATTCGGGGGGTAAACCT	0.403			N|F|S		clear cell renal carcinoma								7	25					0	0	0.003080	0	0
FAAH2	158584	broad.mit.edu	37	X	57515352	57515352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:57515352C>T	uc004dvc.2	+	11	1735	c.1586C>T	c.(1585-1587)CCA>CTA	p.P529L		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	529						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						TGGGTCTGTCCAGGAAAGTTT	0.488										HNSCC(52;0.14)			12	21					0	0	0.013537	0	0
NONO	4841	broad.mit.edu	37	X	70511790	70511790	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:70511790C>T	uc004dzo.2	+	5	1026	c.316C>T	c.(316-318)CAT>TAT	p.H106Y	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.H106Y|NONO_uc004dzp.2_Missense_Mutation_p.H106Y|NONO_uc011mpv.1_Missense_Mutation_p.H17Y|NONO_uc004dzq.2_5'Flank	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	106	DBHS.|RRM 1.				DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					AGTCTTCATTCATAAGGATAA	0.438			T	TFE3	papillary renal cancer								19	27					0	0	0.002780	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004814	75004814	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:75004814C>T	uc004ecj.1	-	1	258	c.73G>A	c.(73-75)GAA>AAA	p.E25K		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	25										ovary(1)|skin(1)	2						GCTTGTATTTCACCTCTGCCG	0.577													10	17					0	0	0.006214	0	0
LPAR4	2846	broad.mit.edu	37	X	78010822	78010822	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:78010822G>A	uc010nme.2	+	2	861	c.456G>A	c.(454-456)AGG>AGA	p.R152R		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	152	Cytoplasmic (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TTAGGACTAGGAGGAATTCTG	0.453													17	18					0	0	0.004990	0	0
BRWD3	254065	broad.mit.edu	37	X	79980546	79980546	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:79980546G>A	uc004edt.2	-	15	1670	c.1407C>T	c.(1405-1407)TTC>TTT	p.F469F	BRWD3_uc004edo.2_Silent_p.F65F|BRWD3_uc004edp.2_Silent_p.F298F|BRWD3_uc004edq.2_Silent_p.F65F|BRWD3_uc010nmj.1_Silent_p.F65F|BRWD3_uc004edr.2_Silent_p.F139F|BRWD3_uc004eds.2_Silent_p.F65F|BRWD3_uc004edu.2_Silent_p.F139F|BRWD3_uc004edv.2_Silent_p.F65F|BRWD3_uc004edw.2_Silent_p.F65F|BRWD3_uc004edx.2_Silent_p.F65F|BRWD3_uc004edy.2_Silent_p.F65F|BRWD3_uc004edz.2_Silent_p.F139F|BRWD3_uc004eea.2_Silent_p.F139F|BRWD3_uc004eeb.2_Silent_p.F65F	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	469	WD 8.									ovary(4)	4						CTTCTAGAACGAATACTTCAT	0.378													8	10					0	0	0.004482	0	0
KLHL4	56062	broad.mit.edu	37	X	86869550	86869550	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:86869550C>T	uc004efb.2	+	3	886	c.704C>T	c.(703-705)TCC>TTC	p.S235F	KLHL4_uc004efa.2_Missense_Mutation_p.S235F	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	235	BTB.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCACTAAATTCCTTGGTGCAG	0.363													6	9					0	0	0.001984	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133285	91133285	+	Silent	SNP	T	C	C			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:91133285T>C	uc004efk.1	+	2	2891	c.2046T>C	c.(2044-2046)TAT>TAC	p.Y682Y	PCDH11X_uc004efl.1_Silent_p.Y682Y|PCDH11X_uc004efo.1_Silent_p.Y682Y|PCDH11X_uc010nmv.1_Silent_p.Y682Y|PCDH11X_uc004efm.1_Silent_p.Y682Y|PCDH11X_uc004efn.1_Silent_p.Y682Y|PCDH11X_uc004efh.1_Silent_p.Y682Y|PCDH11X_uc004efj.1_Silent_p.Y682Y	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	682	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ACTGTTCTTATGAATTGGTTC	0.423													24	37					0	0	0.002780	0	0
PCDH19	57526	broad.mit.edu	37	X	99662260	99662260	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:99662260C>T	uc010nmz.2	-	1	3012	c.1336G>A	c.(1336-1338)GAA>AAA	p.E446K	PCDH19_uc004efw.3_Missense_Mutation_p.E446K|PCDH19_uc004efx.3_Missense_Mutation_p.E446K	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	446	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TTGTCATTTTCGTCAGTGATG	0.572													25	47					0	0	0.003330	0	0
NRK	203447	broad.mit.edu	37	X	105179208	105179208	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:105179208C>T	uc004emd.2	+	21	3849	c.3546C>T	c.(3544-3546)CCC>CCT	p.P1182P	NRK_uc010npc.1_Silent_p.P850P	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1182							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CTAAGCAACCCTCTGAAGTCA	0.408										HNSCC(51;0.14)			23	59					0	0	0.002780	0	0
GPR112	139378	broad.mit.edu	37	X	135405231	135405231	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:135405231T>G	uc004ezu.1	+	5	656	c.365T>G	c.(364-366)ATA>AGA	p.I122R	GPR112_uc010nsb.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	122	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGGCATACAATATGCTTGATA	0.433													3	70					0	0	0.004672	0	0
BRS3	680	broad.mit.edu	37	X	135572395	135572395	+	Silent	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:135572395C>T	uc004ezv.1	+	2	687	c.538C>T	c.(538-540)CTA>TTA	p.L180L		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	180	Helical; Name=4; (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GATATTTGCTCTACCTGAGGC	0.418													15	34					0	0	0.003163	0	0
CDR1	1038	broad.mit.edu	37	X	139865858	139865858	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:139865858C>T	uc004fbg.1	-	1	866	c.674G>A	c.(673-675)AGA>AAA	p.R225K	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	225											0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CCAGAAAAATCTACGTCTTCC	0.438													22	56					0	0	0.014323	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092868	151092868	+	Silent	SNP	G	A	A			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:151092868G>A	uc004fez.2	+	3	888	c.732G>A	c.(730-732)AGG>AGA	p.R244R	MAGEA4_uc004ffa.2_Silent_p.R244R|MAGEA4_uc004ffb.2_Silent_p.R244R|MAGEA4_uc004ffc.2_Silent_p.R244R|MAGEA4_uc004ffd.2_Silent_p.R244R	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	244	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAGCCCAGGAAACTGCTCA	0.592													21	57					0	0	0.010504	0	0
GABRQ	55879	broad.mit.edu	37	X	151821280	151821280	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrX:151821280C>T	uc004ffp.1	+	9	1455	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	479						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTATTTTTCCTACCGAAAT	0.542													27	58					0	0	0.006320	0	0
USP9Y	8287	broad.mit.edu	37	Y	14838532	14838532	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chrY:14838532C>T	uc004fst.1	+	7	1408	c.463C>T	c.(463-465)CGC>TGC	p.R155C	USP9Y_uc010nwu.1_RNA	NM_004654	NP_004645	O00507	USP9Y_HUMAN	ubiquitin specific protease 9, Y-linked	155					BMP signaling pathway|protein deubiquitination|spermatogenesis|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CAATACTCATCGCCTAGTGGA	0.348													13	21					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	1	13290	13291	+	RNA	DEL	CT	-	-			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr1:13290_13291delCT	uc001aaa.3	+	3		c.533_534delCT			uc010nxq.1_Intron|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		ACCCGGCACCCTGTCCTGGACA	0.569													3	6	---	---	---	---					
PRLHR	2834	broad.mit.edu	37	10	120353838	120353839	+	Frame_Shift_Ins	INS	-	G	G			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr10:120353838_120353839insG	uc001ldp.1	-	2	1057_1058	c.918_919insC	c.(916-921)CACGCCfs	p.H306fs		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	306_307	Extracellular (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		GGGTCGATGGCGTGGGGGTCGA	0.649													14	67	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													3	3	---	---	---	---					
MIR663B	100302269	broad.mit.edu	37	2	133014651	133014652	+	RNA	INS	-	C	C	rs150907057		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr2:133014651_133014652insC	hsa-mir-663b|MI0006336	-			c.2_3insC			NCRNA00164_uc002ttj.3_Intron																	0						GGCCCTCGGCACCACCGAGACC	0.678													11	13	---	---	---	---					
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr20:56099187delT	uc010gix.1	-	1	737	c.75delA	c.(73-75)AAAfs	p.K25fs	CTCFL_uc010giw.1_Frame_Shift_Del_p.K25fs|CTCFL_uc002xym.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjb.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjc.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjd.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gje.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjk.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjl.1_Frame_Shift_Del_p.K25fs	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													7	576	---	---	---	---					
MST1	4485	broad.mit.edu	37	3	49723322	49723327	+	In_Frame_Del	DEL	GCGCTG	-	-			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:49723322_49723327delGCGCTG	uc003cxg.2	-	10	1288_1293	c.1216_1221delCAGCGC	c.(1216-1221)CAGCGCdel	p.QR406del	MST1_uc011bcs.1_In_Frame_Del_p.444_446ASA>A	NM_020998	NP_066278	P26927	HGFL_HUMAN	macrophage stimulating 1 (hepatocyte growth	392_393	Kringle 4.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CAGCGGACCAGCGCTGGCACTGGACA	0.704													8	194	---	---	---	---					
MIR567	693152	broad.mit.edu	37	3	111831724	111831724	+	RNA	DEL	A	-	-			TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr3:111831724delA	hsa-mir-567|MI0003573	+			c.77delA			C3orf52_uc003dyq.3_Intron|C3orf52_uc011bhs.1_Intron|C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron																	0						ATGCAAAACTAAAAAAAAAAA	0.323													4	7	---	---	---	---					
ADCK5	203054	broad.mit.edu	37	8	145617535	145617549	+	Splice_Site	DEL	GGGGGTGCAAGGTGA	-	-	rs11270020		TCGA-GN-A269-01A-11D-A19A-08	TCGA-GN-A269-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	8b8e00a4-a509-48ef-bc77-34845b51bb9d	b21836b0-f16e-4eec-a83c-fb42f836194a	g.chr8:145617535_145617549delGGGGGTGCAAGGTGA	uc003zch.2	+	12	1321	c.1267_splice	c.e12+1	p.D423_splice	ADCK5_uc003zcg.2_Intron|ADCK5_uc003zci.2_Splice_Site_p.D12_splice	NM_174922	NP_777582	Q3MIX3	ADCK5_HUMAN	aarF domain containing kinase 5							integral to membrane	protein serine/threonine kinase activity			stomach(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;8.96e-41)|Epithelial(56;4.08e-40)|all cancers(56;4.51e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CAGCCGCACTGGGGGTGCAAGGTGAGGGGGTGCAA	0.660													3	5	---	---	---	---					
