Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PTPRU	10076	broad.mit.edu	37	1	29581894	29581894	+	Missense_Mutation	SNP	C	T	T	rs148144154		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:29581894C>T	uc001bru.2	+	2	291	c.181C>T	c.(181-183)CGG>TGG	p.R61W	PTPRU_uc001brv.2_Missense_Mutation_p.R61W|PTPRU_uc001brw.2_Missense_Mutation_p.R61W|PTPRU_uc009vtq.2_Missense_Mutation_p.R61W|PTPRU_uc009vtr.2_Missense_Mutation_p.R61W	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	61	Extracellular (Potential).|MAM.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CCCTGGCACCCGGGCACCTGC	0.488													13	73					0	0	0.000308642	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			97	63					0	0	0.000781405	0	0
GDAP2	54834	broad.mit.edu	37	1	118455189	118455189	+	Missense_Mutation	SNP	G	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:118455189G>C	uc001ehf.2	-	4	732	c.433C>G	c.(433-435)CTT>GTT	p.L145V	GDAP2_uc001ehg.2_Missense_Mutation_p.L145V	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	145	Macro.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		CAGCTATAAAGGGAACTCTCA	0.403													3	71					0	0	0.00024832	0	0
HORMAD1	84072	broad.mit.edu	37	1	150679276	150679276	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:150679276G>A	uc001evk.1	-	10	663	c.557C>T	c.(556-558)CCA>CTA	p.P186L	HORMAD1_uc001evl.1_Missense_Mutation_p.P179L|HORMAD1_uc001evm.1_Missense_Mutation_p.P106L	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	186	HORMA.				blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			CTGGTAATCTGGGGGTGTAAC	0.348													38	22					0	0	0.00170553	0	0
HRNR	388697	broad.mit.edu	37	1	152187040	152187041	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:152187040_152187041AG>TT	uc001ezt.1	-	3	7140_7141	c.7064_7065CT>AA	c.(7063-7065)ACT>AAA	p.T2355K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2355	25.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCATGCTGAGTGTAACCAGA	0.554													66	516					0	0	6.4e-05	0	0
FLG	2312	broad.mit.edu	37	1	152285831	152285831	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:152285831C>T	uc001ezu.1	-	3	1567	c.1531G>A	c.(1531-1533)GAG>AAG	p.E511K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	511	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGACCCTCTTGGGACGCT	0.607									Ichthyosis				206	146					0	0	0.000781405	0	0
ASH1L	55870	broad.mit.edu	37	1	155450565	155450565	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:155450565C>T	uc009wqq.2	-	3	2576	c.2096G>A	c.(2095-2097)AGC>AAC	p.S699N	ASH1L_uc001fkt.2_Missense_Mutation_p.S699N|ASH1L_uc009wqr.1_Missense_Mutation_p.S699N	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	699					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGTACTTAGGCTTTCAGCAAC	0.393													30	33					0	0	0.001512	0	0
RNF2	6045	broad.mit.edu	37	1	185062287	185062287	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:185062287C>T	uc001grc.1	+	4	576	c.343C>T	c.(343-345)CCA>TCA	p.P115S	RNF2_uc001grd.1_Intron|RNF2_uc001gre.1_RNA	NM_007212	NP_009143	Q99496	RING2_HUMAN	ring finger protein 2	115	Interaction with HIP2.				histone H2A monoubiquitination|transcription, DNA-dependent	MLL1 complex|PcG protein complex|ubiquitin ligase complex	RING-like zinc finger domain binding|zinc ion binding			breast(1)	1		Breast(1374;0.000496)		Colorectal(1306;6.9e-08)|KIRC - Kidney renal clear cell carcinoma(1967;8.12e-06)		CAAAATTTATCCAAGTCGTGA	0.408													35	18					0	0	0.000491102	0	0
CFH	3075	broad.mit.edu	37	1	196714956	196714956	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:196714956G>A	uc001gtj.3	+	21	3560	c.3320G>A	c.(3319-3321)GGA>GAA	p.G1107E		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1107	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GATTCTACAGGAAAATGTGGG	0.398													62	58					0	0	0.000781405	0	0
ASPM	259266	broad.mit.edu	37	1	197071419	197071419	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:197071419G>A	uc001gtu.2	-	18	7219	c.6962C>T	c.(6961-6963)TCA>TTA	p.S2321L	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.S169L	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2321	IQ 22.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCTTCTGTATGATGACTGGAT	0.378													50	43					0	0	0.000781405	0	0
ACBD5	91452	broad.mit.edu	37	10	27499797	27499797	+	Missense_Mutation	SNP	G	A	A	rs149955149		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:27499797G>A	uc010qdp.1	-	9	1341	c.1150C>T	c.(1150-1152)CGG>TGG	p.R384W	ACBD5_uc010qdm.1_Missense_Mutation_p.R382W|ACBD5_uc010qdn.1_Missense_Mutation_p.R275W|ACBD5_uc010qdo.1_Missense_Mutation_p.R207W|ACBD5_uc001ito.2_Missense_Mutation_p.R349W|ACBD5_uc001itp.2_Missense_Mutation_p.R275W|ACBD5_uc001itq.2_Missense_Mutation_p.R275W|ACBD5_uc001itr.1_Missense_Mutation_p.R173W	NM_145698	NP_663736	Q5T8D3	ACBD5_HUMAN	acyl-Coenzyme A binding domain containing 5	393					transport	integral to membrane|peroxisomal membrane	fatty-acyl-CoA binding				0						CGCTTCTCCCGGTGTGGTGCT	0.453													34	51					0	0	0.00058488	0	0
Unknown	0	broad.mit.edu	37	10	31001513	31001513	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:31001513C>T	uc010qdx.1	+	9	1497	c.955C>T	c.(955-957)CAA>TAA	p.Q319*						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		AGCCAGTCCCCAAGTCTTACC	0.463													11	23					0	0	0.00136819	0	0
TMEM72	643236	broad.mit.edu	37	10	45429119	45429119	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:45429119G>A	uc001jbn.2	+	4	441	c.244G>A	c.(244-246)GAG>AAG	p.E82K	uc001jbk.1_Intron|uc001jbl.2_Intron|TMEM72_uc009xmm.1_5'UTR	NM_001123376	NP_001116848	A0PK05	TMM72_HUMAN	transmembrane protein 72	82						integral to membrane					0						CAGAGTAAGGGAGAAAGCCCA	0.597													8	17					0	0	0.000442599	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398													21	62					0	0	0.000375601	0	0
OPN4	94233	broad.mit.edu	37	10	88419746	88419746	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:88419746C>T	uc001kdq.2	+	6	1122	c.895C>T	c.(895-897)CTG>TTG	p.L299L	OPN4_uc001kdp.2_Silent_p.L310L|OPN4_uc010qmk.1_Silent_p.L310L|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	299	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						CAAGATCATGCTGCTGGTCAT	0.622													12	22					0	0	0.000219431	0	0
AGAP11	119385	broad.mit.edu	37	10	88769503	88769503	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:88769503G>A	uc001kee.2	+	12	2698	c.1494G>A	c.(1492-1494)AAG>AAA	p.K498K	AGAP11_uc001kef.2_Intron	NM_133447	NP_597704	Q8TF27	AGA11_HUMAN	ankyrin repeat and GTPase domain Arf GTPase	498	ANK 1.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						CCTGCCGCAAGGGGAATGTGG	0.672													17	26					0	0	0.000295444	0	0
BTAF1	9044	broad.mit.edu	37	10	93741539	93741539	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:93741539C>T	uc001khr.2	+	16	1993	c.1895C>T	c.(1894-1896)GCT>GTT	p.A632V	BTAF1_uc001khs.1_Missense_Mutation_p.A302V|BTAF1_uc001kht.1_Missense_Mutation_p.A70V	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	632					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GAAGTAAAAGCTAGAGCCAAG	0.378													20	20					0	0	0.00121646	0	0
PPRC1	23082	broad.mit.edu	37	10	103899089	103899089	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr10:103899089C>T	uc001kum.2	+	5	863	c.824C>T	c.(823-825)CCC>CTC	p.P275L	PPRC1_uc001kun.2_Missense_Mutation_p.P155L|PPRC1_uc010qqj.1_Missense_Mutation_p.P275L|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	275					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		CCGGACTTCCCCATGCATTTG	0.572													14	34					0	0	0.000566183	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735475	55735475	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr11:55735475G>A	uc010rit.1	-	1	465	c.465C>T	c.(463-465)TTC>TTT	p.F155F		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	155	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					AGGGCAAAAGGAAAATTTGGC	0.388													22	17					0	0	0.000295444	0	0
OR5T1	390155	broad.mit.edu	37	11	56043751	56043751	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr11:56043751T>C	uc001nio.1	+	1	637	c.637T>C	c.(637-639)TAC>CAC	p.Y213H		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.Y213H(1)		ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					TCTATTCTTCTACTTTGTGGG	0.418													19	128					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	11	58660193	58660193	+	RNA	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr11:58660193G>A	uc001nne.1	+	2		c.133G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit13-03-08-F.																		AGTCAGTGAAGGTAGAGCATT	0.433													8	23					0	0	0.000274275	0	0
VWF	7450	broad.mit.edu	37	12	6125965	6125965	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:6125965C>T	uc001qnn.1	-	29	5375	c.5125G>A	c.(5125-5127)GAA>AAA	p.E1709K	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1709	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTCTTCATTTCATCAAAATAA	0.507													31	84					0	0	0.000409698	0	0
APOBEC1	339	broad.mit.edu	37	12	7805412	7805412	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:7805412C>T	uc001qtb.2	-	3	98	c.64G>A	c.(64-66)GAG>AAG	p.E22K	APOBEC1_uc001qtc.2_5'UTR|APOBEC1_uc010sgf.1_Missense_Mutation_p.E22K	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	22					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						ACGTCAAACTCCCAGGGTTCG	0.478													16	54					0	0	0.000958276	0	0
FOXJ2	55810	broad.mit.edu	37	12	8200805	8200805	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:8200805C>T	uc001qtu.2	+	7	2230	c.1145C>T	c.(1144-1146)CCC>CTC	p.P382L	FOXJ2_uc001qtt.1_Missense_Mutation_p.P382L	NM_018416	NP_060886	Q9P0K8	FOXJ2_HUMAN	forkhead box J2	382					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	nucleolus|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding			upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				Kidney(36;0.0944)		CAGCACCATCCCCACTCCCAC	0.627													6	13					0	0	0.00116845	0	0
PRB3	5544	broad.mit.edu	37	12	11420589	11420589	+	Silent	SNP	T	C	C	rs11054205		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:11420589T>C	uc001qzs.2	-	3	632	c.594A>G	c.(592-594)CCA>CCG	p.P198P	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	198	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|7.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			CCGGACGAGGTGGGGGACCTT	0.637													6	195					0	0	8.12818e-05	0	0
LRP6	4040	broad.mit.edu	37	12	12332894	12332894	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:12332894C>A	uc001rah.3	-	7	1537	c.1395G>T	c.(1393-1395)TGG>TGT	p.W465C	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.W465C	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	465	Beta-propeller 2.|Extracellular (Potential).|LDL-receptor class B 8.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GAATTTCTCCCCAGTCAGTCC	0.383													12	291					0.00136819	0.00698809	0.00136819	1	0
LRMP	4033	broad.mit.edu	37	12	25259983	25259983	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:25259983G>A	uc001rgh.2	+	20	2289	c.1255G>A	c.(1255-1257)GTT>ATT	p.V419I	LRMP_uc010sja.1_Missense_Mutation_p.V419I|LRMP_uc010sjb.1_Missense_Mutation_p.V366I|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.V419I|LRMP_uc010sjd.1_Missense_Mutation_p.V366I	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	475	Cytoplasmic (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					TGTCTCTTCAGTGTAAGTTAT	0.378													5	11					0	0	0.00116845	0	0
ZCRB1	85437	broad.mit.edu	37	12	42707759	42707759	+	Silent	SNP	C	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:42707759C>G	uc001rmz.2	-	6	572	c.363G>C	c.(361-363)CCG>CCC	p.P121P	PPHLN1_uc001rmy.2_Intron	NM_033114	NP_149105	Q8TBF4	ZCRB1_HUMAN	zinc finger CCHC-type and RNA binding motif 1	121	CCHC-type.				mRNA processing	nucleoplasm|U12-type spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding			skin(1)	1	all_cancers(12;0.000348)|Breast(8;0.221)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0689)		GCATATTTTTCGGACAGGCAT	0.328													11	40					0	0	0.000422831	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48143586	48143586	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:48143586C>T	uc009zkp.2	-	8	1146	c.706G>A	c.(706-708)GAC>AAC	p.D236N	RAPGEF3_uc010sln.1_5'Flank|RAPGEF3_uc001rpy.2_5'Flank|RAPGEF3_uc009zkq.2_Missense_Mutation_p.D236N|RAPGEF3_uc001rpz.3_Missense_Mutation_p.D278N|RAPGEF3_uc001rqa.2_5'Flank|RAPGEF3_uc009zkr.2_RNA|RAPGEF3_uc009zks.2_Missense_Mutation_p.D290N|RAPGEF3_uc001rqb.3_Missense_Mutation_p.D278N	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	236					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GTGCCCTTGTCCCCCTGGCTG	0.602													27	61					0	0	0.000720815	0	0
AQP6	363	broad.mit.edu	37	12	50367207	50367208	+	Missense_Mutation	DNP	CC	TT	TT	rs147805945		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:50367207_50367208CC>TT	uc001rvr.1	+	1	588_589	c.251_252CC>TT	c.(250-252)GCC>GTT	p.A84V	AQP6_uc001rvp.1_Intron|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	84	Cytoplasmic (Potential).|NPA 1.				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						GCCAACCCCGCCGTGACGCTGG	0.673													14	29					0	0	6.4e-05	0	0
HOXC6	3223	broad.mit.edu	37	12	54422676	54422676	+	Missense_Mutation	SNP	C	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:54422676C>G	uc001sev.2	+	1	483	c.371C>G	c.(370-372)CCC>CGC	p.P124R	HOXC6_uc001ses.2_Missense_Mutation_p.P42R|HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron	NM_004503	NP_004494	P09630	HXC6_HUMAN	homeobox C6 isoform 1	124	Antp-type hexapeptide.				regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CAGATTTACCCCTGGATGCAG	0.468													4	96					0	0	0.00024832	0	0
OR6C6	283365	broad.mit.edu	37	12	55688288	55688288	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:55688288C>T	uc010sph.1	-	1	729	c.729G>A	c.(727-729)ATG>ATA	p.M243I		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						AGACAACAATCATGTGGGAAG	0.368													18	42					0	0	0.000566183	0	0
STAT6	6778	broad.mit.edu	37	12	57496186	57496186	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:57496186G>A	uc009zpe.2	-	13	1650	c.1399C>T	c.(1399-1401)CGG>TGG	p.R467W	STAT6_uc009zpf.2_Missense_Mutation_p.R467W|STAT6_uc001sna.2_Missense_Mutation_p.R467W|STAT6_uc010srb.1_Missense_Mutation_p.R357W|STAT6_uc010src.1_Missense_Mutation_p.R357W|STAT6_uc010srd.1_Missense_Mutation_p.R357W|STAT6_uc009zpg.2_Missense_Mutation_p.R516W	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	467					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						AGCAGCCCCCGGTTGGTCCCC	0.592													23	64					0	0	0.000586117	0	0
LRP1	4035	broad.mit.edu	37	12	57588387	57588387	+	Missense_Mutation	SNP	A	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:57588387A>C	uc001snd.2	+	50	8562	c.8096A>C	c.(8095-8097)AAT>ACT	p.N2699T		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2699	LDL-receptor class A 15.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGCCCTCTGAATTACTTCGCC	0.642													13	34					0	0	0.000308642	0	0
GRIP1	23426	broad.mit.edu	37	12	66935661	66935661	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:66935661G>A	uc001stk.2	-	3	447	c.206C>T	c.(205-207)TCG>TTG	p.S69L	GRIP1_uc010sta.1_Missense_Mutation_p.S13L|GRIP1_uc001stl.1_Missense_Mutation_p.S13L|GRIP1_uc001stm.2_Missense_Mutation_p.S69L	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	69	PDZ 1.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		AATTCCTCCCGATACCGTCAG	0.463													36	205					0	0	0.00128727	0	0
KCNC2	3747	broad.mit.edu	37	12	75444664	75444664	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:75444664G>A	uc001sxg.1	-	3	1665	c.1121C>T	c.(1120-1122)ACT>ATT	p.T374I	KCNC2_uc009zry.2_Missense_Mutation_p.T374I|KCNC2_uc001sxe.2_Missense_Mutation_p.T374I|KCNC2_uc001sxf.2_Missense_Mutation_p.T374I|KCNC2_uc010stw.1_Missense_Mutation_p.T374I	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	374	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						AGCTCGAAGAGTATGTCCAAG	0.443													9	34					0	0	0.000978159	0	0
C12orf63	374467	broad.mit.edu	37	12	97137828	97137828	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:97137828C>T	uc001tet.1	+	22	2941	c.2863C>T	c.(2863-2865)CGT>TGT	p.R955C		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	955										skin(6)|ovary(1)	7						AATTGAATTTCGTTCATCAAA	0.308													11	30					0	0	0.000978159	0	0
SLC17A8	246213	broad.mit.edu	37	12	100797857	100797857	+	Silent	SNP	C	T	T	rs112540425		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:100797857C>T	uc010svi.1	+	9	1408	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I	SLC17A8_uc009ztx.2_Silent_p.I315I	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	365	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTATGACAATCGTTGTACCTA	0.433													17	47					0	0	0.000958276	0	0
SSH1	54434	broad.mit.edu	37	12	109192823	109192823	+	Silent	SNP	C	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:109192823C>G	uc001tnm.2	-	13	1389	c.1302G>C	c.(1300-1302)GCG>GCC	p.A434A	SSH1_uc001tnl.2_Silent_p.A122A|SSH1_uc010sxg.1_Silent_p.A445A|SSH1_uc001tnn.3_Silent_p.A434A	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	434	Tyrosine-protein phosphatase.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TCATAAAGCCCGCGTTGGGGC	0.547													3	49					0	0	6.4e-05	0	0
TBX3	6926	broad.mit.edu	37	12	115109947	115109947	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:115109947G>A	uc001tvt.1	-	8	2895	c.1931C>T	c.(1930-1932)TCC>TTC	p.S644F	TBX3_uc001tvu.1_Missense_Mutation_p.S624F	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	644	Transcription repression.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CACCGGGATGGAGTAGGGGCT	0.741													3	3					0	0	6.4e-05	0	0
SPPL3	121665	broad.mit.edu	37	12	121202819	121202819	+	Missense_Mutation	SNP	G	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr12:121202819G>C	uc001tzd.2	-	11	1619	c.1138C>G	c.(1138-1140)CGA>GGA	p.R380G	SPPL3_uc009zwz.2_Missense_Mutation_p.R373G|SPPL3_uc001tzc.2_Missense_Mutation_p.R210G	NM_139015	NP_620584	Q8TCT6	PSL4_HUMAN	signal peptide peptidase 3	381						integral to membrane	aspartic-type endopeptidase activity				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCCAGGAATCGGGAGCTGCTG	0.507													11	31					0	0	0.000673444	0	0
ATP12A	479	broad.mit.edu	37	13	25265130	25265130	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:25265130C>T	uc001upp.2	+	8	997	c.810C>T	c.(808-810)ACC>ACT	p.T270T	ATP12A_uc010aaa.2_Silent_p.T276T	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	270	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GCACTGTCACCGGCATGGTTA	0.562													24	95					0	0	0.000878237	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49280991	49280991	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:49280991C>T	uc010acx.1	+	6	721	c.38C>T	c.(37-39)TCC>TTC	p.S13F	CYSLTR2_uc010acy.1_Missense_Mutation_p.S13F|CYSLTR2_uc010acz.1_Missense_Mutation_p.S13F|CYSLTR2_uc010ada.1_Missense_Mutation_p.S13F|CYSLTR2_uc010adb.1_Missense_Mutation_p.S13F|CYSLTR2_uc010adc.1_Missense_Mutation_p.S13F|CYSLTR2_uc010add.1_Missense_Mutation_p.S13F|CYSLTR2_uc010acw.1_Missense_Mutation_p.S13F|CYSLTR2_uc001vck.2_Missense_Mutation_p.S13F	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	13	Extracellular (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	CCATCCATCTCCGTATCAGAA	0.373													37	44					0	0	0.000589545	0	0
ATP7B	540	broad.mit.edu	37	13	52548094	52548094	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:52548094C>T	uc001vfw.2	-	2	1419	c.1262G>A	c.(1261-1263)GGA>GAA	p.G421E	ATP7B_uc010adv.2_Missense_Mutation_p.G421E|ATP7B_uc001vfx.2_Missense_Mutation_p.G421E|ATP7B_uc001vfy.2_Missense_Mutation_p.G310E|ATP7B_uc010tgt.1_Missense_Mutation_p.G421E|ATP7B_uc010tgu.1_Missense_Mutation_p.G421E|ATP7B_uc010tgv.1_Missense_Mutation_p.G421E|ATP7B_uc010tgw.1_Missense_Mutation_p.G389E	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	421	HMA 4.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		AGCCTCAAATCCCATGTCTTC	0.453									Wilson_disease				39	33					0	0	0.000509022	0	0
EDNRB	1910	broad.mit.edu	37	13	78477731	78477731	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:78477731C>T	uc001vko.2	-	2	753	c.495G>A	c.(493-495)GAG>GAA	p.E165E	EDNRB_uc001vkq.1_Silent_p.E165E|uc001vkn.1_Intron|EDNRB_uc010aez.1_Silent_p.E165E|EDNRB_uc001vkp.1_Silent_p.E248E	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	165	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	ATGGCCAGTCCTCTGCCAGCA	0.463													5	60					0	0	0.000602214	0	0
EDNRB	1910	broad.mit.edu	37	13	78477733	78477733	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:78477733C>T	uc001vko.2	-	2	751	c.493G>A	c.(493-495)GAG>AAG	p.E165K	EDNRB_uc001vkq.1_Missense_Mutation_p.E165K|uc001vkn.1_Intron|EDNRB_uc010aez.1_Missense_Mutation_p.E165K|EDNRB_uc001vkp.1_Missense_Mutation_p.E248K	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	165	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	GGCCAGTCCTCTGCCAGCAGC	0.463													5	57					0	0	0.000602214	0	0
ERCC5	2073	broad.mit.edu	37	13	103520502	103520502	+	Missense_Mutation	SNP	T	C	C	rs121434575		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr13:103520502T>C	uc001vpw.2	+	12	3016	c.2573T>C	c.(2572-2574)CTT>CCT	p.L858P	ERCC5_uc001vpu.1_Missense_Mutation_p.L1312P|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.L690P	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	858	I-domain.		L -> P (in XP-G; reduced stability and greatly impaired endonuclease activity).		negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GCTTATTTGCTTGGAAGTGAT	0.313			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				10	100					0	0	0.000673444	0	0
FLJ10357	55701	broad.mit.edu	37	14	21548918	21548918	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:21548918C>T	uc001vzp.2	+	12	2502	c.2473C>T	c.(2473-2475)CGT>TGT	p.R825C	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.R111C	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	825					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		GCTGCGATTCCGTGCTTTCAG	0.637													12	30					0	0	0.000308642	0	0
NYNRIN	57523	broad.mit.edu	37	14	24886211	24886211	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:24886211C>T	uc001wpf.3	+	9	5574	c.5256C>T	c.(5254-5256)TCC>TCT	p.S1752S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1752	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GGGCCTCCTCCACTGATGCCA	0.597													4	28					0	0	0.00116845	0	0
CDKL1	8814	broad.mit.edu	37	14	50877280	50877280	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:50877280G>A	uc010anu.1	-	2	123	c.123C>T	c.(121-123)TCC>TCT	p.S41S		NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					tctggttggaggagtctgcac	0													14	64					0	0	0.000308642	0	0
SYT16	83851	broad.mit.edu	37	14	62542093	62542093	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:62542093C>T	uc001xfu.1	+	3	1174	c.977C>T	c.(976-978)TCC>TTC	p.S326F	SYT16_uc010tsd.1_Missense_Mutation_p.S326F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	326										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GACAGCTCCTCCATGTGGAGT	0.473													15	80					0	0	0.000422831	0	0
LIN52	91750	broad.mit.edu	37	14	74564499	74564499	+	Silent	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:74564499T>C	uc001xpp.2	+	4	157	c.147T>C	c.(145-147)CCT>CCC	p.P49P	LIN52_uc010asb.2_RNA	NM_001024674	NP_001019845	Q52LA3	LIN52_HUMAN	lin-52 homolog	49										breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00471)		TTTGACAGCCTATTACTAGTT	0.398													7	22					0	0	0.000442599	0	0
DLST	1743	broad.mit.edu	37	14	75367876	75367876	+	Silent	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:75367876T>C	uc001xqv.2	+	14	1230	c.1167T>C	c.(1165-1167)CCT>CCC	p.P389P	DLST_uc001xqu.2_Silent_p.P301P|DLST_uc001xqt.2_Silent_p.P305P|DLST_uc010tuw.1_Silent_p.P303P	NM_001933	NP_001924	P36957	ODO2_HUMAN	dihydrolipoamide S-succinyltransferase (E2	389					lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	dihydrolipoyllysine-residue succinyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00698)		TCAACCCCCCTCAGTCTGCCA	0.512													19	51					0	0	0.00152264	0	0
MIR432	574451	broad.mit.edu	37	14	101350838	101350838	+	RNA	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:101350838G>A	hsa-mir-432|MI0003133	+			c.19G>A			RTL1_uc010txj.1_Silent_p.L96L|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank																	0						CCAGGTCTTGGAGTAGGTCAT	0.532													31	35					0	0	0.000814825	0	0
MIR487B	664616	broad.mit.edu	37	14	101512845	101512845	+	RNA	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:101512845C>T	hsa-mir-487b|MI0003530	+			c.54C>T			MIR539_hsa-mir-539|MI0003514_5'Flank|MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank																	0						CATGTCGAATCGTACAGGGTC	0.303													7	29					0	0	0.000274275	0	0
ADAM6	8755	broad.mit.edu	37	14	106091486	106091486	+	RNA	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:106091486G>A	uc010tyt.1	-	3647		c.62022C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						TGACCTCAGGGGTCCGGGAGA	0.582													17	66					0	0	0.000422831	0	0
ADAM6	8755	broad.mit.edu	37	14	107099220	107099220	+	RNA	SNP	A	T	T	rs148129115	by1000genomes	TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr14:107099220A>T	uc010tyt.1	-	98		c.4502T>A								Parts of antibodies, mostly variable regions.												0						GTCTCTGGAGATGGTGAATCG	0.498													5	39					0	0	0.000602214	0	0
OR4M2	390538	broad.mit.edu	37	15	22369163	22369163	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:22369163G>A	uc010tzu.1	+	1	588	c.588G>A	c.(586-588)GAG>GAA	p.E196E	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	196	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCCCAGAGGAGTTAGTGATGA	0.463													69	308					0	0	0.000781405	0	0
RYR3	6263	broad.mit.edu	37	15	34140564	34140564	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:34140564G>A	uc001zhi.2	+	94	13640	c.13570G>A	c.(13570-13572)GAA>AAA	p.E4524K	RYR3_uc010bar.2_Missense_Mutation_p.E4519K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4524					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATATATCACCGAACAGCCATC	0.498													9	77					0	0	0.000442599	0	0
C15orf55	256646	broad.mit.edu	37	15	34648262	34648262	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:34648262G>A	uc001zif.2	+	7	2124	c.1969G>A	c.(1969-1971)GGA>AGA	p.G657R	C15orf55_uc010ucc.1_Missense_Mutation_p.G685R|C15orf55_uc010ucd.1_Missense_Mutation_p.G675R	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	657						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		GCAAGTCCTGGGATTGCAGAA	0.567			T	BRD3|BRD4	lethal midline carcinoma								9	38					0	0	0.000442599	0	0
EID1	23741	broad.mit.edu	37	15	49170837	49170837	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:49170837C>A	uc001zxc.1	+	1	548	c.464C>A	c.(463-465)CCG>CAG	p.P155Q	SHC4_uc010uey.1_5'Flank|SHC4_uc010uez.1_5'Flank|SHC4_uc001zxb.1_Intron	NM_014335	NP_055150	Q9Y6B2	EID1_HUMAN	CREBBP/EP300 inhibitor 1	155					cell cycle|cell differentiation|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	histone acetyltransferase binding|histone acetyltransferase regulator activity|transcription corepressor activity			liver(1)	1		all_lung(180;0.00455)		all cancers(107;2.73e-08)|GBM - Glioblastoma multiforme(94;9.58e-07)		GAGAAGACCCCGTTTGATCAG	0.448													4	48					0.00116845	0.00598933	0.00116845	1	0
FGF7	2252	broad.mit.edu	37	15	49776611	49776611	+	Silent	SNP	T	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:49776611T>G	uc001zxn.2	+	4	1024	c.495T>G	c.(493-495)GTT>GTG	p.V165V	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	165					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	AAATGTTTGTTGCCTTAAATC	0.358													3	53					0	0	0.000602214	0	0
DMXL2	23312	broad.mit.edu	37	15	51792048	51792048	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:51792048G>A	uc002abf.2	-	18	3598	c.3373C>T	c.(3373-3375)CTT>TTT	p.L1125F	DMXL2_uc010ufy.1_Missense_Mutation_p.L1125F|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1125						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AAATCATCAAGATGAATTGTT	0.378													8	32					0	0	0.000274275	0	0
DENND4A	10260	broad.mit.edu	37	15	65988718	65988718	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:65988718G>A	uc002aph.2	-	21	3314	c.2936C>T	c.(2935-2937)TCA>TTA	p.S979L	DENND4A_uc002api.2_Missense_Mutation_p.S1022L|DENND4A_uc002apj.3_Missense_Mutation_p.S979L	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	979					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GCTTTCTCCTGATATTTTACC	0.358													28	51					0	0	0.00178596	0	0
RASGRF1	5923	broad.mit.edu	37	15	79320136	79320136	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:79320136A>T	uc002beq.2	-	9	1703	c.1328T>A	c.(1327-1329)ATC>AAC	p.I443N	RASGRF1_uc002bep.2_Missense_Mutation_p.I443N|RASGRF1_uc010blm.1_Missense_Mutation_p.I365N|RASGRF1_uc002ber.3_Missense_Mutation_p.I443N	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	443					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GCCTTCGATGATCATGCGCTC	0.567													37	83					0	0	0.000509022	0	0
BTBD12	84464	broad.mit.edu	37	16	3640721	3640721	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:3640721G>A	uc002cvp.2	-	12	3545	c.2918C>T	c.(2917-2919)TCT>TTT	p.S973F		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	973	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						GTGCGGAAGAGAGCCTTCTTT	0.587								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				18	61					0	0	0.00188189	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261120	21261120	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:21261120C>T	uc010bwp.1	+	2	276	c.233C>T	c.(232-234)GCC>GTC	p.A78V	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	78	ANK 2.									ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		AATGGCCATGCCCACTGCGTC	0.493													8	60					0	0	0.000157383	0	0
KIAA0556	23247	broad.mit.edu	37	16	27689091	27689091	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:27689091G>A	uc002dow.2	+	7	606	c.582G>A	c.(580-582)AGG>AGA	p.R194R	KIAA0556_uc002dox.1_Silent_p.R102R	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	194										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						ATCTACAAAGGAAACAAAAGG	0.453													17	27					0	0	0.000566183	0	0
NLRC5	84166	broad.mit.edu	37	16	57059751	57059751	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:57059751C>T	uc002ekk.1	+	6	1121	c.896C>T	c.(895-897)GCT>GTT	p.A299V	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.A104V|NLRC5_uc002ekl.2_Missense_Mutation_p.A104V|NLRC5_uc002ekm.2_Missense_Mutation_p.A104V|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	299	NACHT.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GAGAAGAACGCTGACCAAGTC	0.557													28	78					0	0	0.000878237	0	0
EDC4	23644	broad.mit.edu	37	16	67913551	67913551	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:67913551C>T	uc002eur.2	+	15	1861	c.1695C>T	c.(1693-1695)TCC>TCT	p.S565S	EDC4_uc010cer.2_Silent_p.S184S|EDC4_uc010vkg.1_Silent_p.S497S|EDC4_uc010ces.1_Silent_p.S353S|EDC4_uc002eus.2_Silent_p.S295S|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	565					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		CTCACGGCTCCCAGCCTGACC	0.607													12	32					0	0	0.000978159	0	0
COG4	25839	broad.mit.edu	37	16	70553588	70553588	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:70553588G>A	uc002ezc.2	-	2	229	c.218C>T	c.(217-219)ACC>ATC	p.T73I	COG4_uc010cfu.2_RNA|COG4_uc002ezd.2_Missense_Mutation_p.T73I|COG4_uc002eze.2_Intron	NM_015386	NP_056201	Q9H9E3	COG4_HUMAN	component of oligomeric golgi complex 4	69	Interacts with SCFD1.				Golgi organization|Golgi vesicle prefusion complex stabilization|protein transport|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0		Ovarian(137;0.0694)				ACTTTCAATGGTGTTTTGCTG	0.413													19	28					0	0	0.000958276	0	0
AP1G1	164	broad.mit.edu	37	16	71783811	71783811	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr16:71783811C>A	uc010cgg.2	-	15	1797	c.1483G>T	c.(1483-1485)GAA>TAA	p.E495*	AP1G1_uc002fba.2_Nonsense_Mutation_p.E498*|AP1G1_uc002fbb.2_Nonsense_Mutation_p.E518*|AP1G1_uc002faz.2_5'Flank	NM_001128	NP_001119	O43747	AP1G1_HUMAN	adaptor-related protein complex 1, gamma 1	495					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|recycling endosome	kinesin binding|protein transporter activity			ovary(2)	2		Ovarian(137;0.125)				ATAGGCTCTTCCTCTTCACAC	0.428													65	210					7.33394e-39	3.85641e-38	0.000781405	1	0
ANKFY1	51479	broad.mit.edu	37	17	4087198	4087198	+	Silent	SNP	A	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:4087198A>C	uc002fxq.1	-	13	1745	c.1707T>G	c.(1705-1707)GCT>GCG	p.A569A	ANKFY1_uc002fxn.2_Silent_p.A611A|ANKFY1_uc002fxo.2_Silent_p.A569A|ANKFY1_uc002fxp.2_Silent_p.A568A|ANKFY1_uc010ckp.2_Silent_p.A510A	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	569	ANK 7.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						TGGCATGAAGAGCATTGGCTA	0.453													7	77					0	0	0.000274275	0	0
GP1BA	2811	broad.mit.edu	37	17	4836484	4836484	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:4836484C>T	uc010vsq.1	+	2	660	c.585C>T	c.(583-585)CTC>CTT	p.L195L	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	195											0						CCCTTCTCCTCCAAGAGAACT	0.532													11	35					0	0	0.00185496	0	0
MYH4	4622	broad.mit.edu	37	17	10366889	10366889	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:10366889C>T	uc002gmn.2	-	8	831	c.720G>A	c.(718-720)AGG>AGA	p.R240R	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	240	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AGTTGTCATTCCTCACGGTCT	0.438													30	44					0	0	0.00058488	0	0
MYH2	4620	broad.mit.edu	37	17	10436610	10436610	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:10436610C>T	uc010coi.2	-	21	2561	c.2433G>A	c.(2431-2433)GTG>GTA	p.V811V	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.V811V|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	811	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACCTTCTCTCCACCATCCTCT	0.433													6	56					0	0	0.00116845	0	0
UBB	7314	broad.mit.edu	37	17	16285560	16285560	+	Silent	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:16285560T>C	uc002gpx.2	+	2	477	c.339T>C	c.(337-339)CCT>CCC	p.P113P	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	113	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		AAGGCATCCCTCCCGACCAGC	0.557													3	62					0	0	6.4e-05	0	0
MYO15A	51168	broad.mit.edu	37	17	18044418	18044418	+	Missense_Mutation	SNP	G	A	A	rs121908972		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:18044418G>A	uc010vxh.1	+	21	5830	c.5492G>A	c.(5491-5493)GGA>GAA	p.G1831E		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1831	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CGCAAGGAGGGATTTCCAGTG	0.557											OREG0024223	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	16					0	0	0.000308642	0	0
SLC47A2	146802	broad.mit.edu	37	17	19611707	19611707	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:19611707G>A	uc002gwe.3	-	7	820	c.645C>T	c.(643-645)ATC>ATT	p.I215I	SLC47A2_uc002gwg.3_Silent_p.I179I|SLC47A2_uc002gwf.3_Silent_p.I179I|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	215	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					GGGGCCAGGTGATCTTCTGAA	0.562													25	58					0	0	0.000586117	0	0
KRT12	3859	broad.mit.edu	37	17	39022959	39022959	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:39022959C>T	uc002hvk.2	-	1	504	c.480G>A	c.(478-480)TGG>TGA	p.W160*		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	160	Rod.|Coil 1A.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GTGTTTCATACCATTCTCGAA	0.388													16	95					0	0	0.00121646	0	0
KRT23	25984	broad.mit.edu	37	17	39092676	39092676	+	Silent	SNP	A	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:39092676A>G	uc002hvm.1	-	2	769	c.180T>C	c.(178-180)GGT>GGC	p.G60G	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Silent_p.G60G|KRT23_uc002hvn.1_Silent_p.G60G	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	60	Head.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				TTCTTCCAGAACCCCAAGACC	0.667													28	41					0	0	0.00178596	0	0
KRT15	3866	broad.mit.edu	37	17	39674668	39674668	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:39674668G>A	uc002hwy.2	-	1	603	c.412C>T	c.(412-414)CAT>TAT	p.H138Y	KRT15_uc002hwz.2_5'UTR|KRT15_uc002hxa.2_5'UTR|KRT15_uc002hxb.1_5'UTR	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	138	Rod.|Coil 1A.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TACCAGTCATGGATCTTCACC	0.542													12	116					0	0	0.00185496	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46058852	46058852	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:46058852T>C	uc002imr.2	+	14	1589	c.1505T>C	c.(1504-1506)ATG>ACG	p.M502T	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.M522T|CDK5RAP3_uc002imq.1_Intron|CDK5RAP3_uc002imu.2_Missense_Mutation_p.M346T|CDK5RAP3_uc002ims.2_Missense_Mutation_p.M415T|CDK5RAP3_uc002imv.2_Missense_Mutation_p.M346T|CDK5RAP3_uc002imw.2_Missense_Mutation_p.M344T|CDK5RAP3_uc002imx.2_Missense_Mutation_p.M277T	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	502					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						GTGAACCTGATGGGAACCTCT	0.547													4	65					0	0	0.000602214	0	0
KCNH6	81033	broad.mit.edu	37	17	61622553	61622553	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:61622553C>T	uc002jay.2	+	13	2699	c.2619C>T	c.(2617-2619)GCC>GCT	p.A873A	KCNH6_uc010wpl.1_Silent_p.A714A|KCNH6_uc010wpm.1_Silent_p.A837A|KCNH6_uc002jaz.1_Silent_p.A784A	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	873	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ATGACCTGGCCTTGGTTCCTA	0.632													9	61					0	0	0.000274275	0	0
POLG2	11232	broad.mit.edu	37	17	62487002	62487002	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:62487002G>A	uc002jei.2	-	4	963	c.880C>T	c.(880-882)CCC>TCC	p.P294S	POLG2_uc010deg.1_Missense_Mutation_p.P294S	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	294					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			TTTCCCCAGGGAAAATTGTAG	0.398													5	53					0	0	0.00116845	0	0
SDK2	54549	broad.mit.edu	37	17	71357873	71357873	+	Missense_Mutation	SNP	A	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:71357873A>C	uc010dfm.2	-	39	5417	c.5417T>G	c.(5416-5418)TTC>TGC	p.F1806C	SDK2_uc002jjt.3_Missense_Mutation_p.F946C|SDK2_uc010dfn.2_Missense_Mutation_p.F1485C	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1806	Extracellular (Potential).|Fibronectin type-III 12.				cell adhesion	integral to membrane				ovary(2)	2						CCCGTAGGTGAAGGTCTTGGC	0.632													14	17					0	0	0.000308642	0	0
SLC16A3	9123	broad.mit.edu	37	17	80195441	80195441	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr17:80195441C>T	uc002kea.2	+	4	934	c.795C>T	c.(793-795)TTC>TTT	p.F265F	SLC16A3_uc002kee.2_Silent_p.F265F|SLC16A3_uc002keb.2_Silent_p.F265F|SLC16A3_uc002kec.2_Silent_p.F265F|SLC16A3_uc002ked.2_Silent_p.F265F	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	265	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	AGGCCGCCTTCCTGCTCACCA	0.682													7	39					0	0	0.000274275	0	0
RBBP8	5932	broad.mit.edu	37	18	20573768	20573769	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr18:20573768_20573769CC>TT	uc002ktw.2	+	12	2228_2229	c.1897_1898CC>TT	c.(1897-1899)CCA>TTA	p.P633L	RBBP8_uc002kty.2_Missense_Mutation_p.P633L|RBBP8_uc002ktz.2_Missense_Mutation_p.P633L|RBBP8_uc002kua.2_Missense_Mutation_p.P633L|RBBP8_uc010xap.1_5'Flank	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	633					cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			TCAGTTAAATCCATGTAGAACT	0.356								Direct_reversal_of_damage|Homologous_recombination					16	23					0	0	6.4e-05	0	0
DCC	1630	broad.mit.edu	37	18	50912435	50912435	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr18:50912435C>T	uc002lfe.1	+	16	2969	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	DCC_uc010xdr.1_Silent_p.I642I|DCC_uc010dpf.1_Silent_p.I449I	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	794	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATTATGTAATCTCCCTAAAAG	0.363													7	64					0	0	0.000274275	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841397	8841397	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:8841397G>A	uc010xkg.1	+	1	7	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						AAACATGGGGGATGTGAATCA	0.428													11	29					0	0	0.000978159	0	0
COL5A3	50509	broad.mit.edu	37	19	10071188	10071188	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:10071188G>A	uc002mmq.1	-	67	5223	c.5137C>T	c.(5137-5139)CGA>TGA	p.R1713*		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1713	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AATCCCGCTCGAGAAGAGCTG	0.567													22	57					0	0	0.000295444	0	0
DNM2	1785	broad.mit.edu	37	19	10893739	10893739	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:10893739C>T	uc002mps.1	+	6	956	c.792C>T	c.(790-792)GCC>GCT	p.A264A	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Silent_p.A264A|DNM2_uc002mpv.1_Silent_p.A264A|DNM2_uc002mpu.1_Silent_p.A264A|DNM2_uc010dxl.1_Silent_p.A264A|DNM2_uc002mpw.2_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	264					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			CCCACCCGGCCTACCGGCACA	0.582													17	27					0	0	0.00074312	0	0
CNN1	1264	broad.mit.edu	37	19	11658678	11658678	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:11658678G>A	uc002msc.1	+	5	621	c.457G>A	c.(457-459)GAG>AAG	p.E153K	CNN1_uc010xmb.1_Missense_Mutation_p.E103K|CNN1_uc010xmc.1_Missense_Mutation_p.E103K	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	153					actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						GCGGAAATTCGAGCCGGGGAA	0.587													12	36					0	0	0.00136819	0	0
BRD4	23476	broad.mit.edu	37	19	15366921	15366921	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:15366921G>A	uc002nar.2	-	9	1927	c.1705C>T	c.(1705-1707)CCT>TCT	p.P569S	BRD4_uc002nas.2_Missense_Mutation_p.P569S|BRD4_uc002nat.3_Missense_Mutation_p.P569S|BRD4_uc002nau.3_Missense_Mutation_p.P569S	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	569	Lys-rich.				interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			tttttaggaggaggttccttg	0.214			T	NUT|C15orf55	lethal midline carcinoma of young people								9	17					0	0	0.000274275	0	0
ZNF737	100129842	broad.mit.edu	37	19	20736569	20736569	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:20736569G>A	uc002npa.2	-	2	256	c.76C>T	c.(76-78)CGG>TGG	p.R26W		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	26					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TATAAATTCCGCTGTGCAGTG	0.393													10	95					0	0	0.00136819	0	0
ZNF99	7652	broad.mit.edu	37	19	22940885	22940885	+	Missense_Mutation	SNP	C	T	T	rs78202728		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:22940885C>T	uc010xrh.1	-	5	1553	c.1553G>A	c.(1552-1554)AGA>AAA	p.R518K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CTGATGTTTTCTAAGGGCTGA	0.373													7	32					0	0	0.000673444	0	0
SPTBN4	57731	broad.mit.edu	37	19	41008156	41008157	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:41008156_41008157CC>TT	uc002ony.2	+	9	1105_1106	c.1019_1020CC>TT	c.(1018-1020)TCC>TTT	p.S340F	SPTBN4_uc002onx.2_Missense_Mutation_p.S340F|SPTBN4_uc002onz.2_Missense_Mutation_p.S340F	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	340	Spectrin 1.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TTTGCCAACTCCTTAAGTGGGG	0.604													16	64					0	0	6.4e-05	0	0
PSG6	5675	broad.mit.edu	37	19	43411107	43411107	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:43411107C>T	uc002ovj.1	-	5	1259	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E410K|PSG6_uc002ovi.2_Missense_Mutation_p.E404K|PSG6_uc010xwk.1_Missense_Mutation_p.E243K|PSG11_uc002ovk.1_Missense_Mutation_p.E402K|PSG6_uc002ove.1_Missense_Mutation_p.E193K|PSG6_uc002ovf.1_Missense_Mutation_p.E310K|PSG6_uc002ovg.1_Missense_Mutation_p.E403K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	403	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTGGAGATTTCCTTGCCAGTG	0.448													104	177					0	0	0.000781405	0	0
ZNF285	26974	broad.mit.edu	37	19	44892134	44892134	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:44892134G>A	uc002ozd.3	-	4	360	c.273C>T	c.(271-273)ATC>ATT	p.I91I	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Silent_p.I98I	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GAAGGTTCACGATATAATCCT	0.418													17	73					0	0	0.000958276	0	0
TPRX1	284355	broad.mit.edu	37	19	48305309	48305309	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:48305309G>A	uc002php.1	-	2	1030	c.959C>T	c.(958-960)CCA>CTA	p.P320L		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	320	Gly-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		gcctgggattggagctgggac	0.348													5	8					0	0	0.000602214	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49344473	49344473	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:49344473G>A	uc002pkx.2	-	17	2389	c.1838C>T	c.(1837-1839)TCC>TTC	p.S613F	PLEKHA4_uc002pkw.1_Missense_Mutation_p.S128F|PLEKHA4_uc010eml.2_Intron	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	613						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		AAGCCGGGGGGAGGTCGGGCG	0.711													7	12					0	0	0.000442599	0	0
PRR12	57479	broad.mit.edu	37	19	50097782	50097782	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:50097782C>T	uc002poo.3	+	3	271	c.271C>T	c.(271-273)CTT>TTT	p.L91F		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CGTCATGAACCTTATCTCGGC	0.667													13	57					0	0	0.000308642	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52132319	52132319	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:52132319C>T	uc002pxe.2	-	4	850	c.711G>A	c.(709-711)CAG>CAA	p.Q237Q		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	237	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TGGTGATGGTCTGTGGAGCAT	0.522													29	104					0	0	0.000491102	0	0
NLRP4	147945	broad.mit.edu	37	19	56373427	56373427	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:56373427G>A	uc002qmd.3	+	5	2510	c.2088G>A	c.(2086-2088)TTG>TTA	p.L696L	NLRP4_uc002qmf.2_Silent_p.L621L|NLRP4_uc010etf.2_Silent_p.L527L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	696							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCCAGACTTGAAATACCTGA	0.443													35	67					0	0	0.000953801	0	0
ZNF470	388566	broad.mit.edu	37	19	57088659	57088659	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:57088659G>A	uc002qnl.3	+	6	1538	c.862G>A	c.(862-864)GAA>AAA	p.E288K	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	288	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TGAATGTACTGAATGTGGGAA	0.418													17	62					0	0	0.00152264	0	0
PEG3	5178	broad.mit.edu	37	19	57326708	57326708	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr19:57326708C>T	uc002qnu.2	-	7	3453	c.3102G>A	c.(3100-3102)AAG>AAA	p.K1034K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.K1005K|PEG3_uc002qnv.2_Silent_p.K1034K|PEG3_uc002qnw.2_Silent_p.K910K|PEG3_uc002qnx.2_Silent_p.K908K|PEG3_uc010etr.2_Silent_p.K1034K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1034					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GTCTGAAGTCCTTACATTTGT	0.463													15	47					0	0	0.000219431	0	0
OSR1	130497	broad.mit.edu	37	2	19552099	19552099	+	Silent	SNP	G	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:19552099G>C	uc002rdc.2	-	3	1041	c.738C>G	c.(736-738)CTC>CTG	p.L246L		NM_145260	NP_660303	Q8TAX0	OSR1_HUMAN	odd-skipped related 1	246	C2H2-type 3.				chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|heart development|mesangial cell development|mesonephric duct morphogenesis|metanephric cap mesenchymal cell proliferation involved in metanephros development|metanephric glomerulus vasculature development|metanephric interstitial cell development|metanephric mesenchymal cell differentiation|metanephric nephron tubule development|metanephric smooth muscle tissue development|middle ear morphogenesis|negative regulation of apoptosis|negative regulation of nephron tubule epithelial cell differentiation|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|pattern specification involved in metanephros development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of gastrulation|positive regulation of transcription from RNA polymerase II promoter|pronephros development|renal vesicle progenitor cell differentiation|specification of anterior mesonephric tubule identity|specification of posterior mesonephric tubule identity|stem cell differentiation|transcription, DNA-dependent|ureter urothelium development|ureteric bud development	nucleolus	nucleic acid binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	Acute lymphoblastic leukemia(84;0.221)				TGTGGACAGCGAGAGTCCTGG	0.498													4	64					0	0	0.00024832	0	0
CAD	790	broad.mit.edu	37	2	27465600	27465600	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:27465600C>T	uc002rji.2	+	41	6497	c.6335C>T	c.(6334-6336)CCA>CTA	p.P2112L	CAD_uc010eyw.2_Missense_Mutation_p.P2049L	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	2112	ATCase (Aspartate transcarbamylase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CTGCGCATGCCACCCACTGTG	0.652													13	25					0	0	0.000308642	0	0
C2orf71	388939	broad.mit.edu	37	2	29294548	29294548	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:29294548C>T	uc002rmt.1	-	1	2580	c.2580G>A	c.(2578-2580)AAG>AAA	p.K860K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	860					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCTGGGTTTCCTTGGGGGAGT	0.607													23	37					0	0	0.00047179	0	0
EIF2AK2	5610	broad.mit.edu	37	2	37374849	37374849	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:37374849C>T	uc010ynh.1	-	3	658	c.101G>A	c.(100-102)GGA>GAA	p.G34E	EIF2AK2_uc010fab.1_Missense_Mutation_p.G34E|EIF2AK2_uc010yng.1_Missense_Mutation_p.G34E|EIF2AK2_uc010fac.2_Missense_Mutation_p.G34E|EIF2AK2_uc010fad.2_Missense_Mutation_p.G34E	NM_002759	NP_002750	P19525	E2AK2_HUMAN	eukaryotic translation initiation factor 2-alpha	34	DRBM 1.				evasion by virus of host immune response|modulation by virus of host cellular process|negative regulation of osteoblast proliferation|protein autophosphorylation|response to virus|viral infectious cycle	cytosol	ATP binding|double-stranded RNA binding|eukaryotic translation initiation factor 2alpha kinase activity|protein binding|protein phosphatase type 2A regulator activity			ovary(2)|lung(2)|pancreas(1)	5		all_hematologic(82;0.248)				ATGTGGAGGTCCTGAATTAGG	0.289													23	84					0	0	0.000375601	0	0
ALMS1	7840	broad.mit.edu	37	2	73747010	73747010	+	Silent	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:73747010T>C	uc002sje.1	+	13	9762	c.9651T>C	c.(9649-9651)TCT>TCC	p.S3217S	ALMS1_uc002sjf.1_Silent_p.S3173S|ALMS1_uc002sjg.2_Silent_p.S2603S|ALMS1_uc002sjh.1_Silent_p.S2603S|ALMS1_uc010fev.1_Silent_p.S32S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3215					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TATTTTCATCTGAGATTTTTA	0.398													19	41					0	0	0.00188189	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101318	80101318	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:80101318C>T	uc010ysh.1	+	5	707	c.702C>T	c.(700-702)GCC>GCT	p.A234A	CTNNA2_uc010yse.1_Silent_p.A234A|CTNNA2_uc010ysf.1_Silent_p.A234A|CTNNA2_uc010ysg.1_Silent_p.A234A	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	234					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CAGATGTCGCCGCTACGAGAG	0.577													8	22					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	2	89475866	89475866	+	RNA	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:89475866C>T	uc010ytr.1	-	28		c.3615G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CAGCTTCCACCCTGCTGATTT	0.493													30	50					0	0	0.00058488	0	0
MFSD9	84804	broad.mit.edu	37	2	103335191	103335191	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:103335191G>A	uc002tcb.2	-	6	1181	c.1113C>T	c.(1111-1113)GCC>GCT	p.A371A	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	371	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						CCATGGTGGGGGCCAAGGAGT	0.612													6	17					0	0	0.000157383	0	0
PCDP1	200373	broad.mit.edu	37	2	120362355	120362355	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:120362355C>T	uc002tmb.2	+	10	1133	c.41C>T	c.(40-42)CCT>CTT	p.P14L	PCDP1_uc010yyq.1_Missense_Mutation_p.P144L	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	300						cilium	calmodulin binding				0	Colorectal(110;0.196)					AAGCCGAAGCCTCAGAAGGTG	0.458													24	59					0	0	0.000878237	0	0
PTPN4	5775	broad.mit.edu	37	2	120723176	120723176	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:120723176G>A	uc002tmf.1	+	25	3284	c.2513G>A	c.(2512-2514)CGA>CAA	p.R838Q	PTPN4_uc010flj.1_Missense_Mutation_p.R551Q|PTPN4_uc010yyr.1_Missense_Mutation_p.R471Q	NM_002830	NP_002821	P29074	PTN4_HUMAN	protein tyrosine phosphatase, non-receptor type	838	Tyrosine-protein phosphatase.					cytoplasm|cytoskeleton|internal side of plasma membrane	cytoskeletal protein binding|non-membrane spanning protein tyrosine phosphatase activity			ovary(2)	2					Alendronate(DB00630)	TGTCATGTACGAAACAAGAGG	0.438													12	32					0	0	0.00136819	0	0
BAZ2B	29994	broad.mit.edu	37	2	160287382	160287382	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:160287382G>A	uc002uao.2	-	10	2538	c.2186C>T	c.(2185-2187)CCA>CTA	p.P729L	BAZ2B_uc002uap.2_Missense_Mutation_p.P727L|BAZ2B_uc002uaq.1_Intron|BAZ2B_uc002uar.1_Missense_Mutation_p.P302L	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	729					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						ACCAGAGTGTGGGCTTGAAGT	0.408													10	58					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179574440	179574440	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:179574440G>A	uc010zfg.1	-	96	25098	c.24874C>T	c.(24874-24876)CCA>TCA	p.P8292S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P4953S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9219							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGAAGTTGGTTGTATCTCT	0.413													8	97					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179587136	179587136	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:179587136T>C	uc010zfg.1	-	74	18870	c.18646A>G	c.(18646-18648)AGA>GGA	p.R6216G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R2877G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7143							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATCGTCTCTTAAAAGTACT	0.413													13	49					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179635322	179635323	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:179635322_179635323GG>AA	uc010zfg.1	-	35	8420_8421	c.8196_8197CC>TT	c.(8194-8199)CACCCT>CATTCT	p.P2733S	TTN_uc010zfh.1_Missense_Mutation_p.P2687S|TTN_uc010zfi.1_Missense_Mutation_p.P2687S|TTN_uc010zfj.1_Missense_Mutation_p.P2687S|TTN_uc002unb.2_Missense_Mutation_p.P2733S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2733							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGACATTAGGGTGTGTAAGCT	0.391													26	63					0	0	6.4e-05	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545152	196545152	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:196545152A>T	uc002utg.3	+	2	600	c.386A>T	c.(385-387)CAG>CTG	p.Q129L	SLC39A10_uc002uth.3_Missense_Mutation_p.Q129L|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	129	His-rich.				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			CATAACCACCAGCATTCCCAT	0.368													19	48					0	0	0.00121646	0	0
SLC39A10	57181	broad.mit.edu	37	2	196545497	196545497	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:196545497C>T	uc002utg.3	+	2	945	c.731C>T	c.(730-732)TCT>TTT	p.S244F	SLC39A10_uc002uth.3_Missense_Mutation_p.S244F|SLC39A10_uc010zgp.1_Intron	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	244					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			AATGAAAATTCTGAGGTTATT	0.408													7	28					0	0	0.000157383	0	0
GPR1	2825	broad.mit.edu	37	2	207041026	207041026	+	Missense_Mutation	SNP	G	A	A	rs142744381		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:207041026G>A	uc002vbl.3	-	3	1332	c.946C>T	c.(946-948)CGG>TGG	p.R316W	GPR1_uc010fue.2_Missense_Mutation_p.R316W|GPR1_uc010fuf.2_Missense_Mutation_p.R316W	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	316	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		ACTGAGGACCGGAAGCGAGCT	0.488													12	47					0	0	0.00136819	0	0
VIL1	7429	broad.mit.edu	37	2	219294086	219294086	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:219294086G>A	uc002via.2	+	7	711	c.646G>A	c.(646-648)GAA>AAA	p.E216K	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.E216K|VIL1_uc002vic.1_Missense_Mutation_p.E216K	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	216	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGGAGAGAATGAATTGGCATC	0.647													18	40					0	0	0.00121646	0	0
TTLL4	9654	broad.mit.edu	37	2	219618933	219618933	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:219618933G>A	uc002viy.2	+	20	3791	c.3421G>A	c.(3421-3423)GGC>AGC	p.G1141S	TTLL4_uc010zkl.1_Intron|TTLL4_uc010fvx.2_Missense_Mutation_p.G1077S	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1141					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		GACTCAAGCTGGCCTTTCCCC	0.512													35	64					0	0	0.000692331	0	0
DEFB125	245938	broad.mit.edu	37	20	76875	76875	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:76875G>A	uc002wcw.2	+	2	288	c.288G>A	c.(286-288)TTG>TTA	p.L96L		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	96					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			TATCTATGTTGAATGATCTGA	0.408													15	110					0	0	0.000219431	0	0
ATRN	8455	broad.mit.edu	37	20	3553591	3553591	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:3553591C>T	uc002wim.2	+	12	2175	c.2085C>T	c.(2083-2085)TCC>TCT	p.S695S	ATRN_uc002wil.2_Silent_p.S695S	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	695	Extracellular (Potential).				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						AATGTTTTTCCAAAAGAAGTA	0.353													10	13					0	0	0.000442599	0	0
BFSP1	631	broad.mit.edu	37	20	17475568	17475568	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:17475568G>A	uc002wpo.2	-	8	1188	c.1149C>T	c.(1147-1149)AAC>AAT	p.N383N	BFSP1_uc002wpp.2_Silent_p.N258N|BFSP1_uc010zrn.1_Silent_p.N244N|BFSP1_uc010zro.1_Silent_p.N244N	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	383	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						CCAGAGCTCCGTTGGTTTTGT	0.408													55	89					0	0	0.000781405	0	0
ABHD12	26090	broad.mit.edu	37	20	25303973	25303973	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:25303973G>A	uc002wus.1	-	3	548	c.410C>T	c.(409-411)ACC>ATC	p.T137I	ABHD12_uc002wuq.2_Missense_Mutation_p.T137I|ABHD12_uc002wur.2_Missense_Mutation_p.T137I|ABHD12_uc002wut.1_Missense_Mutation_p.T137I|ABHD12_uc002wuu.1_5'UTR	NM_001042472	NP_001035937	Q8N2K0	ABD12_HUMAN	abhydrolase domain containing 12 isoform a	137	Extracellular (Potential).					integral to membrane	acylglycerol lipase activity			skin(1)	1						GACTCCAATGGTCACGTCTTC	0.498													37	60					0	0	0.00148497	0	0
PIGU	128869	broad.mit.edu	37	20	33232014	33232014	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:33232014G>A	uc002xas.2	-	4	472	c.272C>T	c.(271-273)ACT>ATT	p.T91I	PIGU_uc010zul.1_Missense_Mutation_p.T91I|PIGU_uc002xat.2_Missense_Mutation_p.T71I|PIGU_uc010gev.1_RNA	NM_080476	NP_536724	Q9H490	PIGU_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	91					attachment of GPI anchor to protein|C-terminal protein lipidation|regulation of JAK-STAT cascade	GPI-anchor transamidase complex|plasma membrane					0						GGCAATAGCAGTGAGTGCATC	0.413													19	105					0	0	0.00121646	0	0
SERINC3	10955	broad.mit.edu	37	20	43141631	43141631	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:43141631G>A	uc002xme.2	-	3	340	c.206C>T	c.(205-207)CCT>CTT	p.P69L	SERINC3_uc002xmf.1_Missense_Mutation_p.P69L|SERINC3_uc010ggs.1_Missense_Mutation_p.P62L|SERINC3_uc010zwp.1_Missense_Mutation_p.P14L	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	69	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			ACAAAATCCAGGAATCTGGAA	0.373													6	52					0	0	0.00116845	0	0
ZNFX1	57169	broad.mit.edu	37	20	47870325	47870325	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr20:47870325G>A	uc002xui.2	-	11	3230	c.2983C>T	c.(2983-2985)CTA>TTA	p.L995L		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	995							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACCTTCTGTAGGATCTGGCGG	0.552													99	133					0	0	0.000781405	0	0
C21orf34	388815	broad.mit.edu	37	21	17443631	17443631	+	RNA	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr21:17443631C>T	uc002ykb.2	+	2		c.225C>T			C21orf34_uc010glc.2_RNA	NR_027790				Homo sapiens C21ORF34 (C21orf34) mRNA, partial cds, alternatively spliced.												0		Breast(209;0.152)		Epithelial(23;8.3e-05)|all cancers(11;0.000383)|Colorectal(24;0.00387)|COAD - Colon adenocarcinoma(22;0.0113)|OV - Ovarian serous cystadenocarcinoma(11;0.0127)|LUSC - Lung squamous cell carcinoma(23;0.153)		CAACCGCTGCCCGAGCAGGCA	0.522													4	45					0	0	0.00024832	0	0
CHAF1B	8208	broad.mit.edu	37	21	37771827	37771827	+	Missense_Mutation	SNP	G	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr21:37771827G>T	uc002yvj.2	+	7	725	c.587G>T	c.(586-588)CGA>CTA	p.R196L		NM_005441	NP_005432	Q13112	CAF1B_HUMAN	chromatin assembly factor 1 subunit B	196	WD 4.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|cytoplasm	chromatin binding|histone binding|unfolded protein binding			ovary(1)|skin(1)	2						AGGGTGCTGCGAGTATACAGT	0.398													5	84					0.00116845	0.00598933	0.00116845	1	0
SEZ6L	23544	broad.mit.edu	37	22	26688508	26688508	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr22:26688508G>A	uc003acb.2	+	2	387	c.231G>A	c.(229-231)GCG>GCA	p.A77A	SEZ6L_uc003acc.2_Silent_p.A77A|SEZ6L_uc011akc.1_Silent_p.A77A|SEZ6L_uc003acd.2_Silent_p.A77A|SEZ6L_uc011akd.1_Silent_p.A77A|SEZ6L_uc003ace.2_Silent_p.A77A|SEZ6L_uc003acf.1_5'UTR|SEZ6L_uc010gvc.1_5'UTR	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	77	Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CACAGTCGGCGGAAGTGCTGG	0.652													5	10					0	0	0.00116845	0	0
ASPHD2	57168	broad.mit.edu	37	22	26838430	26838430	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr22:26838430A>T	uc003acg.2	+	3	1289	c.892A>T	c.(892-894)AAA>TAA	p.K298*		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	298	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						ACAAGGTCTGAAAACTCCAAA	0.532													47	102					0	0	0.000781405	0	0
SLC5A1	6523	broad.mit.edu	37	22	32479091	32479091	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr22:32479091C>T	uc003amc.2	+	7	846	c.614C>T	c.(613-615)ACC>ATC	p.T205I	SLC5A1_uc011alz.1_Missense_Mutation_p.T78I	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	205	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						TACACGGACACCTTGCAGACG	0.587													7	43					0	0	0.000274275	0	0
L3MBTL2	83746	broad.mit.edu	37	22	41626181	41626181	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr22:41626181G>A	uc003azo.2	+	17	2098	c.2044G>A	c.(2044-2046)GCC>ACC	p.A682T	L3MBTL2_uc003azn.2_RNA|CHADL_uc003azq.3_Intron|CHADL_uc010gyj.2_Intron	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	682					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						TCTAGACGTGGCCTCGCCCGA	0.602													15	50					0	0	0.00152264	0	0
CRELD1	78987	broad.mit.edu	37	3	9982599	9982600	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:9982599_9982600GG>AA	uc003bug.2	+	6	644_645	c.526_527GG>AA	c.(526-528)GGG>AAG	p.G176K	CIDEC_uc003bto.2_Intron|CRELD1_uc003buf.2_Missense_Mutation_p.G176K|CRELD1_uc003buh.2_Missense_Mutation_p.G176K|CRELD1_uc003bui.2_Missense_Mutation_p.G176K|CRELD1_uc003buj.2_RNA	NM_001077415	NP_001070883	Q96HD1	CREL1_HUMAN	cysteine-rich with EGF-like domains 1 isoform 3	176	Extracellular (Potential).|EGF-like 1.				cardiac septum development|endocardial cushion development	integral to membrane	calcium ion binding			ovary(1)	1						AGGGACACGAGGGGGCAGCGGG	0.634													29	34					0	0	6.4e-05	0	0
AZI2	64343	broad.mit.edu	37	3	28365566	28365566	+	Silent	SNP	A	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:28365566A>G	uc003ceb.2	-	8	1678	c.1146T>C	c.(1144-1146)GAT>GAC	p.D382D	AZI2_uc003cec.2_Silent_p.D270D|AZI2_uc003ced.2_3'UTR	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	382						mitochondrion|plasma membrane				ovary(2)	2						GATTATGTTGATCCAAGTAAT	0.388													33	87					0	0	0.000692331	0	0
CCR2	729230	broad.mit.edu	37	3	46399716	46399716	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:46399716G>A	uc003cpn.3	+	2	1183	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	CCR2_uc003cpm.3_Missense_Mutation_p.R233Q	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	233	Cytoplasmic (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		CTTCGGTGTCGAAACGAGAAG	0.458													35	278					0	0	0.00148497	0	0
MAP4	4134	broad.mit.edu	37	3	47957837	47957837	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:47957837G>A	uc003csb.2	-	7	2006	c.1480C>T	c.(1480-1482)CCG>TCG	p.P494S	MAP4_uc003csc.3_Missense_Mutation_p.P494S|MAP4_uc011bbf.1_Missense_Mutation_p.P471S|MAP4_uc003csf.3_Missense_Mutation_p.P511S	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	494	17 X 14 AA tandem repeats.|15.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		ACTGTGGACGGAGCCACATCC	0.507													55	114					0	0	0.000781405	0	0
OR5H14	403273	broad.mit.edu	37	3	97868962	97868962	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:97868962C>T	uc003dsg.1	+	1	733	c.733C>T	c.(733-735)CTC>TTC	p.L245F		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGGAGCTCATCTCTTATCTGT	0.413													7	35					0	0	0.000157383	0	0
CD96	10225	broad.mit.edu	37	3	111317000	111317000	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:111317000C>T	uc003dxw.2	+	7	1059	c.889C>T	c.(889-891)CCC>TCC	p.P297S	CD96_uc003dxv.2_Missense_Mutation_p.P281S|CD96_uc003dxx.2_Missense_Mutation_p.P281S|CD96_uc010hpy.1_Missense_Mutation_p.P281S|ZBED2_uc003dxy.2_5'Flank	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	297	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						GAATGTATTTCCCAAAGCAAA	0.323									Opitz_Trigonocephaly_syndrome				98	186					0	0	0.000781405	0	0
SLC9A10	285335	broad.mit.edu	37	3	111997653	111997653	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:111997653G>A	uc003dyu.2	-	4	463	c.241C>T	c.(241-243)CGT>TGT	p.R81C	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Missense_Mutation_p.R81C	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	81	Helical; (Potential).				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						GTAAATATACGAAAAAATAAG	0.313													49	100					0	0	0.000781405	0	0
MYLK	4638	broad.mit.edu	37	3	123419455	123419455	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:123419455G>A	uc003ego.2	-	18	3142	c.2860C>T	c.(2860-2862)CGC>TGC	p.R954C	MYLK_uc011bjw.1_Missense_Mutation_p.R954C|MYLK_uc003egp.2_Missense_Mutation_p.R885C|MYLK_uc003egq.2_Missense_Mutation_p.R954C|MYLK_uc003egr.2_Missense_Mutation_p.R885C|MYLK_uc003egs.2_Missense_Mutation_p.R778C|MYLK_uc003egt.2_Missense_Mutation_p.R145C	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	954	Actin-binding (calcium/calmodulin- sensitive) (By similarity).|1-4.|5 X 28 AA approximate tandem repeats.|Calmodulin-binding (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGGACAGAGCGAAAATCGACC	0.597													18	34					0	0	0.00074312	0	0
ATR	545	broad.mit.edu	37	3	142218479	142218479	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:142218479A>T	uc003eux.3	-	31	5492	c.5370T>A	c.(5368-5370)TAT>TAA	p.Y1790*		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1790	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CTGCTGCCAAATAGTTTTCCA	0.274								Other_conserved_DNA_damage_response_genes					45	92					0	0	0.000781405	0	0
IGSF10	285313	broad.mit.edu	37	3	151166575	151166575	+	Silent	SNP	C	T	T	rs146034413	byFrequency	TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:151166575C>T	uc011bod.1	-	4	1194	c.1194G>A	c.(1192-1194)CCG>CCA	p.P398P		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	398					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AATAGAGCTGCGGTGTTTCAC	0.428													9	51					0	0	0.000442599	0	0
KNG1	3827	broad.mit.edu	37	3	186460064	186460064	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:186460064C>T	uc011bsa.1	+	10	2091	c.1879C>T	c.(1879-1881)CCA>TCA	p.P627S	KNG1_uc003fqr.2_Intron	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	627					blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	TGAAATTAATCCAACCACACA	0.378													34	73					0	0	0.00128727	0	0
C3orf59	151963	broad.mit.edu	37	3	192516600	192516600	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:192516600C>T	uc011bsp.1	-	2	1372	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	351											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GCATAGTCTTCTTGAGCCAAG	0.522													29	30					0	0	0.00106085	0	0
SORCS2	57537	broad.mit.edu	37	4	7716002	7716002	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:7716002C>T	uc003gkb.3	+	16	2025	c.2025C>T	c.(2023-2025)TTC>TTT	p.F675F	SORCS2_uc011bwi.1_Silent_p.F503F	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	675	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						AGAGAAGTTTCCGGAAAAGAA	0.602													8	3					0	0	0.000673444	0	0
GNPDA2	132789	broad.mit.edu	37	4	44709924	44709924	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:44709924C>T	uc003gwy.2	-	6	771	c.614G>A	c.(613-615)GGG>GAG	p.G205E	GNPDA2_uc010iga.2_Missense_Mutation_p.G171E|GNPDA2_uc011bzb.1_Missense_Mutation_p.G135E|GNPDA2_uc003gwz.1_Missense_Mutation_p.G205E	NM_138335	NP_612208	Q8TDQ7	GNPI2_HUMAN	glucosamine-6-phosphate deaminase 2	205					N-acetylglucosamine metabolic process	cytoplasm	glucosamine-6-phosphate deaminase activity|hydrolase activity			ovary(1)	1						CTTGTGTGCCCCTGTTATAAG	0.378													16	30					0	0	0.00152264	0	0
PDGFRA	5156	broad.mit.edu	37	4	54256001	54256001	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:54256001C>T	uc003haa.2	+	6	544	c.358C>T	c.(358-360)CTT>TTT	p.L120F	FIP1L1_uc003gzx.3_Missense_Mutation_p.L105F|FIP1L1_uc011bzt.1_Missense_Mutation_p.L120F|FIP1L1_uc003gzy.2_Missense_Mutation_p.L120F|FIP1L1_uc011bzu.1_Missense_Mutation_p.L105F|FIP1L1_uc003gzz.2_Missense_Mutation_p.L105F|FIP1L1_uc003hab.2_Missense_Mutation_p.L108F|FIP1L1_uc003hac.2_Intron	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	Error:Variant_position_missing_in_P16234_after_alignment					cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	ACCTGTAAATCTTAACATCAA	0.308			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			5	87					0	0	0.00116845	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316976	72316976	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:72316976G>A	uc003hfy.2	+	11	1397	c.1280G>A	c.(1279-1281)GGA>GAA	p.G427E	SLC4A4_uc010iic.2_Missense_Mutation_p.G427E|SLC4A4_uc010iib.2_Missense_Mutation_p.G427E|SLC4A4_uc003hfz.2_Missense_Mutation_p.G427E|SLC4A4_uc003hgc.3_Missense_Mutation_p.G383E|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Missense_Mutation_p.G305E|SLC4A4_uc003hgb.3_Missense_Mutation_p.G383E	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	427	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GGTCACGGAGGAGGAGGACAT	0.458													10	86					0	0	0.00136819	0	0
SPP1	6696	broad.mit.edu	37	4	88902728	88902728	+	Silent	SNP	C	T	T	rs150169219		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:88902728C>T	uc003hra.2	+	6	483	c.318C>T	c.(316-318)AAC>AAT	p.N106N	SPP1_uc003hrb.2_Silent_p.N79N|SPP1_uc003hrc.2_Silent_p.N92N|SPP1_uc011cde.1_Silent_p.N119N|SPP1_uc003hrd.2_Silent_p.N65N	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	106					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		TTGACTCGAACGACTCTGATG	0.463													25	181					0	0	0.000586117	0	0
PCDH10	57575	broad.mit.edu	37	4	134071330	134071330	+	Missense_Mutation	SNP	T	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:134071330T>G	uc003iha.2	+	1	861	c.35T>G	c.(34-36)ATG>AGG	p.M12R	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.M12R	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	12					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TTGCTCTGGATGGTGGAAGGA	0.517													15	128					0	0	0.000422831	0	0
TBC1D9	23158	broad.mit.edu	37	4	141543721	141543721	+	Missense_Mutation	SNP	G	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:141543721G>C	uc010ioj.2	-	21	3701	c.3429C>G	c.(3427-3429)AAC>AAG	p.N1143K		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1143						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				AGCAGGCCCCGTTGTCCCGGG	0.637													14	77					0	0	0.000566183	0	0
MMAA	166785	broad.mit.edu	37	4	146563584	146563585	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:146563584_146563585GA>AC	uc003ikh.3	+	3	594_595	c.509_510GA>AC	c.(508-510)AGA>AAC	p.R170N	MMAA_uc003ikg.2_Missense_Mutation_p.R170N|MMAA_uc003iki.1_RNA|MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	170						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTTACTGAGAGAGGGCACAAAT	0.426													18	138					0	0	6.4e-05	0	0
FGA	2243	broad.mit.edu	37	4	155505773	155505773	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:155505773C>T	uc003iod.1	-	6	2162	c.2104G>A	c.(2104-2106)GAG>AAG	p.E702K		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	702	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCTTCCCCCTCGTCATTCAGG	0.488													33	60					0	0	0.000814825	0	0
NPY2R	4887	broad.mit.edu	37	4	156135252	156135252	+	Missense_Mutation	SNP	T	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:156135252T>A	uc003ioq.2	+	2	656	c.161T>A	c.(160-162)ATA>AAA	p.I54K	NPY2R_uc003ior.2_Missense_Mutation_p.I54K	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	54	Helical; Name=1; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GTTGTTCTCATATTGGCCTAC	0.468													26	36					0	0	0.001512	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634314	156634314	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:156634314C>T	uc003iov.2	+	8	1687	c.1151C>T	c.(1150-1152)TCA>TTA	p.S384L	GUCY1A3_uc010iqc.2_Missense_Mutation_p.S384L|GUCY1A3_uc003iow.2_Missense_Mutation_p.S384L|GUCY1A3_uc010iqd.2_Missense_Mutation_p.S383L|GUCY1A3_uc003iox.2_Missense_Mutation_p.S384L|GUCY1A3_uc003ioz.2_Missense_Mutation_p.S149L|GUCY1A3_uc003ioy.2_Missense_Mutation_p.S384L|GUCY1A3_uc010iqe.2_Missense_Mutation_p.S149L|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.S384L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	384					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TTTTTGGGGTCACCCTGTGTG	0.428													6	50					0	0	0.000157383	0	0
NPY5R	4889	broad.mit.edu	37	4	164271557	164271557	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr4:164271557G>A	uc003iqn.2	+	4	314	c.132G>A	c.(130-132)CTG>CTA	p.L44L		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	44	Helical; Name=1; (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				AGTATTTTCTGATTGGGCTCT	0.388													31	46					0	0	0.00178596	0	0
MTMR12	54545	broad.mit.edu	37	5	32263339	32263339	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:32263339G>A	uc003jhq.2	-	7	763	c.593C>T	c.(592-594)CCC>CTC	p.P198L	MTMR12_uc010iuk.2_Missense_Mutation_p.P198L|MTMR12_uc010iul.2_Missense_Mutation_p.P198L	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	198						cytoplasm	phosphatase activity			ovary(1)	1						ATGGTTCTTGGGATCAGTGAC	0.403													23	40					0	0	0.000375601	0	0
C7	730	broad.mit.edu	37	5	40959662	40959662	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:40959662C>T	uc003jmh.2	+	12	1715	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	534	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GGTGGGAGATCCTGCGTTGGA	0.547													5	4					0	0	0.000602214	0	0
GPBP1	65056	broad.mit.edu	37	5	56527096	56527096	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:56527096C>T	uc003jrh.3	+	5	1633	c.359C>T	c.(358-360)ACC>ATC	p.T120I	GPBP1_uc010iwg.2_Missense_Mutation_p.T120I|GPBP1_uc003jri.3_5'UTR|GPBP1_uc003jrj.3_Missense_Mutation_p.T127I|GPBP1_uc003jrk.3_Missense_Mutation_p.T127I|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		GACAATGAAACCGGGAGGAAA	0.398													8	10					0	0	0.000442599	0	0
F2R	2149	broad.mit.edu	37	5	76028770	76028771	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:76028770_76028771GG>AA	uc003ken.3	+	2	985_986	c.720_721GG>AA	c.(718-723)AAGGAG>AAAAAG	p.E241K		NM_001992	NP_001983	P25116	PAR1_HUMAN	coagulation factor II receptor precursor	241	Extracellular (Potential).				activation of caspase activity|anatomical structure morphogenesis|connective tissue replacement involved in inflammatory response wound healing|negative regulation of cell proliferation|platelet activation|positive regulation of blood coagulation|positive regulation of cell migration|positive regulation of collagen biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JAK-STAT cascade|positive regulation of MAPKKK cascade|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of transcription, DNA-dependent|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	caveola|extracellular region|Golgi apparatus|integral to plasma membrane|platelet dense tubular network	receptor binding|thrombin receptor activity			ovary(3)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)	Streptokinase(DB00086)	TGCTCCTCAAGGAGCAAACCAT	0.559													18	36					0	0	6.4e-05	0	0
SNCAIP	9627	broad.mit.edu	37	5	121787239	121787239	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:121787239G>A	uc003ksw.1	+	10	2903	c.2697G>A	c.(2695-2697)AGG>AGA	p.R899R	SNCAIP_uc011cwl.1_Silent_p.R457R|SNCAIP_uc003ksx.1_Silent_p.R946R|SNCAIP_uc003ksy.1_Silent_p.R533R|SNCAIP_uc003ksz.1_Silent_p.R533R|SNCAIP_uc010jcu.2_Silent_p.R495R|SNCAIP_uc011cwm.1_Silent_p.R533R|SNCAIP_uc003kta.1_Silent_p.R531R|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.R593R|SNCAIP_uc010jcx.1_Silent_p.R839R|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Silent_p.R415R	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	899					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CACTTGGGAGGAAGACAGATG	0.438													12	82					0	0	0.000308642	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129037099	129037099	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:129037099G>A	uc003kvb.1	+	20	2955	c.2955G>A	c.(2953-2955)TGG>TGA	p.W985*	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	985	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGACAGAATGGACCCCTTGTT	0.388													13	69					0	0	0.000566183	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140763310	140763310	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:140763310C>T	uc003lka.1	+	1	844	c.844C>T	c.(844-846)CGG>TGG	p.R282W	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.R282W	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	282	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATATTCTTTTCGGAAAATAAC	0.423													14	28					0	0	0.000219431	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142254733	142254733	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:142254733G>A	uc011dbj.1	+	3	344	c.309G>A	c.(307-309)CGG>CGA	p.R103R	ARHGAP26_uc003lmt.2_Silent_p.R103R|ARHGAP26_uc003lmw.2_Silent_p.R103R	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	103					actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AACGGATACGGATGGTGAGTA	0.368													14	60					0	0	0.000422831	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776386	159776386	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:159776386C>T	uc003lyd.2	-	3	786	c.782G>A	c.(781-783)GGC>GAC	p.G261D		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	216	C1q.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCGGTACTGGCCGTTGTGCAC	0.607													6	36					0	0	0.00116845	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171766534	171766534	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr5:171766534C>T	uc003mbr.2	-	13	1746	c.1575G>A	c.(1573-1575)CGG>CGA	p.R525R		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	525					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGGATTCTTTCCGCGGAGGGA	0.647													6	37					0	0	0.00116845	0	0
CAGE1	285782	broad.mit.edu	37	6	7374052	7374052	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:7374052C>T	uc003mxi.2	-	4	1313	c.592G>A	c.(592-594)GAG>AAG	p.E198K	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.E89K|CAGE1_uc003mxk.1_Missense_Mutation_p.E89K	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	334	Potential.										0	Ovarian(93;0.0418)					ACCCTCTTCTCTAAATACAGG	0.353													15	29					0	0	0.000566183	0	0
C6orf47	57827	broad.mit.edu	37	6	31627574	31627574	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:31627574C>T	uc003nvm.1	-	1	976	c.151G>A	c.(151-153)GAA>AAA	p.E51K		NM_021184	NP_067007	O95873	CF047_HUMAN	G4 protein	51										ovary(1)	1						CCCACATCTTCCATGGTTTCT	0.577													27	169					0	0	0.000878237	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675372	31675372	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:31675372C>A	uc003nwa.1	+	2	190	c.190C>A	c.(190-192)CAA>AAA	p.Q64K	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.Q64K	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	64	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						CCTGGTAGCCCAAGTCCAAGT	0.577													8	213					0.000274275	0.00142643	0.000274275	1	0
TNXB	7148	broad.mit.edu	37	6	32026058	32026058	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:32026058G>A	uc003nzl.2	-	22	7804	c.7602C>T	c.(7600-7602)TCC>TCT	p.S2534S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2594	Fibronectin type-III 18.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGAGTCAGGGGAGGATCCTG	0.677													43	203					0	0	0.000680045	0	0
CUTA	51596	broad.mit.edu	37	6	33385045	33385045	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:33385045G>A	uc003oej.1	-	3	588	c.300C>T	c.(298-300)ATC>ATT	p.I100I	CUTA_uc003oek.1_Silent_p.I77I|CUTA_uc003oel.1_Silent_p.I77I|CUTA_uc003oem.1_Silent_p.I77I|CUTA_uc003oen.1_Silent_p.I119I|SYNGAP1_uc003oeo.1_5'Flank|SYNGAP1_uc011dri.1_5'Flank|SYNGAP1_uc010juy.2_5'Flank	NM_001014840	NP_001014840	O60888	CUTA_HUMAN	cutA divalent cation tolerance homolog isoform	100					protein localization|response to metal ion	membrane	enzyme binding				0						TAATCTGAGGGATGAGGTTGA	0.532													5	54					0	0	0.00116845	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34826330	34826330	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:34826330C>T	uc003oju.3	+	14	2431	c.2197C>T	c.(2197-2199)CGC>TGC	p.R733C	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	733										ovary(3)	3						CCTACCCCTCCGCTGGCAGCA	0.552													6	20					0	0	8.12818e-05	0	0
SLC26A8	116369	broad.mit.edu	37	6	35927241	35927241	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:35927241G>A	uc003olm.2	-	16	1970	c.1859C>T	c.(1858-1860)CCC>CTC	p.P620L	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.P202L|SLC26A8_uc003oln.2_Missense_Mutation_p.P620L|SLC26A8_uc003oll.2_Missense_Mutation_p.P515L	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	620	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TCTAACCCTGGGCAGCGGCTC	0.358													33	59					0	0	0.000953801	0	0
SLC25A27	9481	broad.mit.edu	37	6	46623699	46623699	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:46623699C>T	uc003oyh.2	+	2	477	c.226C>T	c.(226-228)CTA>TTA	p.L76L	SLC25A27_uc011dwb.1_Silent_p.L76L|SLC25A27_uc003oyg.2_Silent_p.L76L|SLC25A27_uc011dwc.1_5'UTR|SLC25A27_uc003oyi.2_5'Flank	NM_004277	NP_004268	O95847	UCP4_HUMAN	solute carrier family 25, member 27	76	Solcar 1.				generation of precursor metabolites and energy|transport	integral to membrane|mitochondrial inner membrane					0			Lung(136;0.192)			GCGCACAGCTCTAGGGATCAT	0.488													38	72					0	0	0.00128727	0	0
PTPRK	5796	broad.mit.edu	37	6	128403707	128403707	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:128403707C>T	uc003qbk.2	-	10	2019	c.1652G>A	c.(1651-1653)TGG>TAG	p.W551*	PTPRK_uc003qbj.2_Nonsense_Mutation_p.W551*|PTPRK_uc010kfc.2_Nonsense_Mutation_p.W551*|PTPRK_uc011ebu.1_Nonsense_Mutation_p.W551*|PTPRK_uc003qbl.1_Nonsense_Mutation_p.W421*|PTPRK_uc011ebv.1_Nonsense_Mutation_p.W551*	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	551	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TGTACTGTTCCATAAATTTGA	0.438													10	37					0	0	0.00136819	0	0
PTPRK	5796	broad.mit.edu	37	6	128505667	128505667	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:128505667C>T	uc003qbk.2	-	7	1439	c.1072G>A	c.(1072-1074)GAA>AAA	p.E358K	PTPRK_uc003qbj.2_Missense_Mutation_p.E358K|PTPRK_uc010kfc.2_Missense_Mutation_p.E358K|PTPRK_uc011ebu.1_Missense_Mutation_p.E358K|PTPRK_uc003qbl.1_Missense_Mutation_p.E228K|PTPRK_uc011ebv.1_Missense_Mutation_p.E358K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	358	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		ATCTCATATTCGGTATCTGGA	0.458													12	71					0	0	0.00185496	0	0
LAMA2	3908	broad.mit.edu	37	6	129609139	129609140	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:129609139_129609140CC>TT	uc003qbn.2	+	19	2790_2791	c.2685_2686CC>TT	c.(2683-2688)GGCCGG>GGTTGG	p.R896W	LAMA2_uc003qbo.2_Missense_Mutation_p.R896W	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	896	Laminin EGF-like 8.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GTACAACAGGCCGGTACTGTGA	0.49													20	88					0	0	6.4e-05	0	0
PLG	5340	broad.mit.edu	37	6	161127528	161127528	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr6:161127528G>A	uc003qtm.3	+	2	202	c.139G>A	c.(139-141)GAA>AAA	p.E47K		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	47	PAN.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGGAAGTATAGAAGAATGTGC	0.483													31	91					0	0	0.001512	0	0
RADIL	55698	broad.mit.edu	37	7	4871806	4871806	+	Missense_Mutation	SNP	T	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:4871806T>G	uc003snj.1	-	5	1593	c.1420A>C	c.(1420-1422)AAA>CAA	p.K474Q	RADIL_uc003sng.1_RNA|RADIL_uc003sni.1_5'UTR|RADIL_uc011jwc.1_Missense_Mutation_p.K234Q|RADIL_uc011jwd.1_RNA	NM_018059	NP_060529	Q96JH8	RADIL_HUMAN	Rap GTPase interactor	474					cell adhesion|multicellular organismal development|signal transduction		protein binding			lung(2)|central_nervous_system(2)|pancreas(2)|breast(1)	7		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;7.41e-15)		TCTTTGGTTTTCTCCTACAAT	0.517													9	12					0	0	0.000673444	0	0
THSD7A	221981	broad.mit.edu	37	7	11633060	11633060	+	Silent	SNP	G	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:11633060G>C	uc003ssf.3	-	3	1344	c.1092C>G	c.(1090-1092)TCC>TCG	p.S364S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	364	TSP type-1 3.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		CTGACCACTCGGAAACCTGGC	0.498										HNSCC(18;0.044)			28	39					0	0	0.00106085	0	0
INHBA	3624	broad.mit.edu	37	7	41730045	41730045	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:41730045G>A	uc003thq.2	-	2	719	c.484C>T	c.(484-486)CCC>TCC	p.P162S	INHBA_uc003thr.2_Missense_Mutation_p.P162S	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	162					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TTGGCCTTGGGGACTTTTAGG	0.577										TSP Lung(11;0.080)			13	51					0	0	0.000308642	0	0
SUN3	256979	broad.mit.edu	37	7	48048663	48048663	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:48048663G>A	uc003tof.2	-	5	395	c.298C>T	c.(298-300)CGT>TGT	p.R100C	SUN3_uc010kyq.2_5'UTR|SUN3_uc003tog.2_Missense_Mutation_p.R100C|SUN3_uc011kcf.1_Missense_Mutation_p.R88C	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	100	Potential.					integral to membrane				central_nervous_system(1)	1						TTAGGCATACGAAGTCTGGCC	0.328													38	67					0	0	0.00128727	0	0
ELN	2006	broad.mit.edu	37	7	73449699	73449699	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:73449699C>T	uc003tzw.2	+	2	179	c.88C>T	c.(88-90)CCT>TCT	p.P30S	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Missense_Mutation_p.P30S|ELN_uc003tzn.2_Missense_Mutation_p.P30S|ELN_uc003tzz.2_Missense_Mutation_p.P30S|ELN_uc003tzo.2_Missense_Mutation_p.P30S|ELN_uc003tzp.2_Missense_Mutation_p.P30S|ELN_uc003tzq.2_Missense_Mutation_p.P30S|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.P30S|ELN_uc003tzt.2_Missense_Mutation_p.P30S|ELN_uc003tzu.2_Missense_Mutation_p.P30S|ELN_uc003tzv.2_Missense_Mutation_p.P30S|ELN_uc003tzx.2_Missense_Mutation_p.P30S|ELN_uc011kff.1_Missense_Mutation_p.P30S|ELN_uc003tzy.2_Missense_Mutation_p.P30S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	30					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TTCAGGGGTCCCTGGGGCCAT	0.393			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						22	45					0	0	0.000586117	0	0
CLIP2	7461	broad.mit.edu	37	7	73770794	73770794	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:73770794C>T	uc003uam.2	+	5	1185	c.858C>T	c.(856-858)ATC>ATT	p.I286I	CLIP2_uc003uan.2_Silent_p.I286I	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	286						microtubule associated complex				skin(3)	3						ACAAAGTGATCCGTATCGGCT	0.587													26	112					0	0	0.00111076	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86568250	86568250	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:86568250G>A	uc011kha.1	-	7	1059	c.874C>T	c.(874-876)CCT>TCT	p.P292S	KIAA1324L_uc003uif.1_Missense_Mutation_p.P52S|KIAA1324L_uc011kgz.1_Missense_Mutation_p.P178S|KIAA1324L_uc003uie.2_Missense_Mutation_p.P125S	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	292	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GGCTTGCAAGGAAAACATTCT	0.463													12	36					0	0	0.000978159	0	0
CCDC132	55610	broad.mit.edu	37	7	92932844	92932844	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:92932844C>T	uc003umo.2	+	17	1562	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Silent_p.F448F|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Silent_p.F198F	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	478											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AGTCAAATTTCAGCATCTTGC	0.308													35	141					0	0	0.00148497	0	0
PTCD1	26024	broad.mit.edu	37	7	99022519	99022520	+	Silent	DNP	GG	AA	AA			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:99022519_99022520GG>AA	uc003uqh.2	-	6	1766_1767	c.1635_1636CC>TT	c.(1633-1638)GTCCTG>GTTTTG	p.545_546VL>VL	PTCD1_uc011kiw.1_Silent_p.594_595VL>VL	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	545_546	PPR 7.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CTCTTTGCCAGGACCGGCAACA	0.589													12	32					0	0	6.4e-05	0	0
STAG3	10734	broad.mit.edu	37	7	99802628	99802628	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:99802628G>A	uc003utx.1	+	28	3107	c.2952G>A	c.(2950-2952)AAG>AAA	p.K984K	STAG3_uc011kjk.1_Silent_p.K926K|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Silent_p.K208K	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	984					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCCAACCAAGGGAAGGCATCC	0.547													38	91					0	0	0.00111076	0	0
GPR22	2845	broad.mit.edu	37	7	107114811	107114812	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:107114811_107114812CC>AT	uc003vef.2	+	3	1652_1653	c.306_307CC>AT	c.(304-309)ATCCTT>ATATTT	p.L103F	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	103	Helical; Name=2; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						CTATAGTTATCCTTCTGCTTTC	0.356													35	102					0	0	6.4e-05	0	0
LRRC4	64101	broad.mit.edu	37	7	127669308	127669308	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:127669308C>T	uc003vmk.2	-	2	1523	c.1386G>A	c.(1384-1386)ACG>ACA	p.T462T	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	462	Thr-rich.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		GCGAGATCTCCGTGGTCTCCA	0.547													26	86					0	0	0.000878237	0	0
SVOPL	136306	broad.mit.edu	37	7	138312999	138312999	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:138312999C>T	uc011kqh.1	-	10	973	c.973G>A	c.(973-975)GGG>AGG	p.G325R	SVOPL_uc003vue.2_Missense_Mutation_p.G173R	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	325						integral to membrane	transmembrane transporter activity				0						CCTGAGTCCCCCCCAGTCACC	0.557													21	55					0	0	0.000295444	0	0
PARP12	64761	broad.mit.edu	37	7	139734127	139734127	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:139734127G>A	uc003vvl.1	-	8	2203	c.1329C>T	c.(1327-1329)TTC>TTT	p.F443F	PARP12_uc003vvk.1_Silent_p.F229F|PARP12_uc010lnf.1_RNA	NM_022750	NP_073587	Q9H0J9	PAR12_HUMAN	poly ADP-ribose polymerase 12	443	WWE 2.					nucleus	NAD+ ADP-ribosyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)	3	Melanoma(164;0.0142)					TTTTCTGAACGAAGGCTGAAA	0.353													9	23					0	0	0.000442599	0	0
TRY6	154754	broad.mit.edu	37	7	142481317	142481317	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:142481317G>A	uc011ksq.1	+	3	474	c.391G>A	c.(391-393)GCC>ACC	p.A131T	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TCTGCCCACTGCCCCTCCAGC	0.547													5	18					0	0	0.000157383	0	0
CLCN1	1180	broad.mit.edu	37	7	143029880	143029880	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:143029880G>A	uc003wcr.1	+	12	1402	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N	CLCN1_uc011ktc.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	439					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ACACGCGGGTGATCCTGAGAG	0.527													21	72					0	0	0.000295444	0	0
FAM115C	285966	broad.mit.edu	37	7	143417076	143417076	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr7:143417076A>T	uc003wdf.2	+	3	1007	c.924A>T	c.(922-924)AAA>AAT	p.K308N	FAM115C_uc003wdg.2_Missense_Mutation_p.K27N|FAM115C_uc011ktk.1_Missense_Mutation_p.K308N|FAM115C_uc003wdh.2_Missense_Mutation_p.K308N|FAM115C_uc011ktm.1_Missense_Mutation_p.K308N|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|FAM115C_uc011ktt.1_Missense_Mutation_p.K144N|FAM115C_uc003wdi.1_Missense_Mutation_p.K27N	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	308											0						CAAATCTAAAAGATCTGTGTC	0.567													10	14					0	0	0.000308642	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													6	43					0	0	0.000442599	0	0
CSMD1	64478	broad.mit.edu	37	8	3224606	3224606	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:3224606C>T	uc011kwk.1	-	20	3456	c.3066G>A	c.(3064-3066)CGG>CGA	p.R1022R	CSMD1_uc011kwj.1_Silent_p.R414R|CSMD1_uc003wqe.2_Silent_p.R178R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1022	Extracellular (Potential).|CUB 6.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTGATATAAACCGAAGCTGGG	0.488													5	25					0	0	8.12818e-05	0	0
TNFRSF10D	8793	broad.mit.edu	37	8	23003354	23003354	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:23003354G>A	uc003xcz.1	-	5	655	c.563C>T	c.(562-564)TCC>TTC	p.S188F		NM_003840	NP_003831	Q9UBN6	TR10D_HUMAN	tumor necrosis factor receptor superfamily,	188	Extracellular (Potential).				anti-apoptosis|apoptosis	integral to membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TTTCCCAGTGGAACTGGCAGC	0.522													13	65					0	0	0.000219431	0	0
CDCA2	157313	broad.mit.edu	37	8	25364680	25364680	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:25364680C>T	uc003xep.1	+	15	2977	c.2498C>T	c.(2497-2499)TCC>TTC	p.S833F	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_3'UTR|CDCA2_uc003xeq.1_Missense_Mutation_p.S818F|CDCA2_uc003xer.1_Missense_Mutation_p.S496F	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	833					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AGAAGACGTTCCATGTGTTAT	0.393													13	29					0	0	0.00185496	0	0
EBF2	64641	broad.mit.edu	37	8	25715842	25715842	+	Silent	SNP	A	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:25715842A>G	uc003xes.1	-	14	1538	c.1521T>C	c.(1519-1521)CCT>CCC	p.P507P	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	507	Pro/Ser/Thr-rich.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TACTTCCATAAGGAGAGCCGG	0.473													14	57					0	0	0.000566183	0	0
HNF4G	3174	broad.mit.edu	37	8	76471069	76471069	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:76471069A>G	uc003yaq.2	+	9	1049	c.779A>G	c.(778-780)AAG>AGG	p.K260R	HNF4G_uc003yar.2_Missense_Mutation_p.K297R	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	260					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTAAAAATTAAGAACATGAGG	0.438													10	43					0	0	0.000673444	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766201	77766201	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:77766201A>T	uc003yav.2	+	10	7296	c.6909A>T	c.(6907-6909)CAA>CAT	p.Q2303H	ZFHX4_uc003yau.1_Missense_Mutation_p.Q2348H|ZFHX4_uc003yaw.1_Missense_Mutation_p.Q2303H	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2303						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ATGAAAGCCAAACAGAAGACT	0.458										HNSCC(33;0.089)			32	109					0	0	0.000692331	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814337	106814337	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:106814337C>T	uc003ymd.2	+	8	2050	c.2027C>T	c.(2026-2028)CCC>CTC	p.P676L	ZFPM2_uc011lhs.1_Missense_Mutation_p.P407L	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	676					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCAGTGTCCCCTTAGTGGAT	0.428													7	28					0	0	8.12818e-05	0	0
PLEC	5339	broad.mit.edu	37	8	144999609	144999609	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:144999609G>A	uc003zaf.1	-	31	5069	c.4899C>T	c.(4897-4899)GCC>GCT	p.A1633A	PLEC_uc003zab.1_Silent_p.A1496A|PLEC_uc003zac.1_Silent_p.A1500A|PLEC_uc003zad.2_Silent_p.A1496A|PLEC_uc003zae.1_Silent_p.A1464A|PLEC_uc003zag.1_Silent_p.A1474A|PLEC_uc003zah.2_Silent_p.A1482A|PLEC_uc003zaj.2_Silent_p.A1523A	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	1633	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCAAGCGCTCGGCCTCCTCCT	0.741													5	11					0	0	0.000602214	0	0
SLC1A1	6505	broad.mit.edu	37	9	4585545	4585545	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:4585545C>T	uc003zij.1	+	12	1798	c.1562C>T	c.(1561-1563)ACC>ATC	p.T521I	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	521					D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	TTCACCCAGACCTCACAGTTC	0.463													33	33					0	0	0.000814825	0	0
KIAA2026	158358	broad.mit.edu	37	9	5969206	5969206	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:5969206G>A	uc003zjq.3	-	3	1241	c.1025C>T	c.(1024-1026)TCG>TTG	p.S342L		NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	342										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		CATTATTTTCGATAGAAAAGC	0.418													13	19					0	0	0.00185496	0	0
FREM1	158326	broad.mit.edu	37	9	14819293	14819293	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:14819293C>T	uc003zlm.2	-	14	3075	c.2485G>A	c.(2485-2487)GGA>AGA	p.G829R	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	829	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		AGAGGAAATCCATTCAGCTCC	0.433													15	16					0	0	0.000422831	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962661	41962661	+	RNA	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:41962661G>A	uc004aca.3	-	3		c.848C>T				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTTCCCCTCCGTTGTTTGTCC	0.358													4	14					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	9	78973505	78973505	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:78973505C>T	uc004akc.1	+	10	1726	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		TCACCTCCTCCATGATGCTGG	0.532													26	13					0	0	0.000720815	0	0
NFIL3	4783	broad.mit.edu	37	9	94171671	94171671	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:94171671C>T	uc004arh.2	-	2	1741	c.1346G>A	c.(1345-1347)AGA>AAA	p.R449K		NM_005384	NP_005375	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	449					circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0						GGCTATAAGTCTCTTGAGTGA	0.418													40	27					0	0	0.000437636	0	0
LPPR1	54886	broad.mit.edu	37	9	104079650	104079650	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:104079650A>G	uc004bbb.2	+	7	1216	c.817A>G	c.(817-819)ATG>GTG	p.M273V	LPPR1_uc011lvi.1_Missense_Mutation_p.M249V|LPPR1_uc004bbc.2_Missense_Mutation_p.M273V|LPPR1_uc010mtc.2_Missense_Mutation_p.M257V	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	273	Helical; (Potential).					integral to membrane	catalytic activity				0						CCTGCAGGGAATGTGTGTGGT	0.512													54	135					0	0	0.000781405	0	0
PPP6C	5537	broad.mit.edu	37	9	127915952	127915952	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:127915952G>A	uc004bpg.3	-	6	750	c.529C>T	c.(529-531)CGA>TGA	p.R177*	PPP6C_uc010mwv.2_Nonsense_Mutation_p.R214*|PPP6C_uc010mww.2_Nonsense_Mutation_p.R155*|PPP6C_uc011lzr.1_Nonsense_Mutation_p.R30*	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	177					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TCGATGGTTCGAATTTGATCC	0.408													22	21					0	0	0.000295444	0	0
TTC16	158248	broad.mit.edu	37	9	130493449	130493449	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:130493449G>A	uc004brq.1	+	14	2454	c.2387G>A	c.(2386-2388)AGG>AAG	p.R796K	TTC16_uc011mai.1_Missense_Mutation_p.R783K|TTC16_uc004brr.1_3'UTR|TTC16_uc010mxn.1_Missense_Mutation_p.R392K	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	796							binding				0						GGCCGAAGCAGGGGACTGCTC	0.607													8	4					0	0	0.000274275	0	0
COQ4	51117	broad.mit.edu	37	9	131088142	131088142	+	Silent	SNP	C	T	T	rs111535641		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:131088142C>T	uc004bur.3	+	4	731	c.384C>T	c.(382-384)CTC>CTT	p.L128L	COQ4_uc011max.1_Silent_p.L128L|COQ4_uc004bus.2_Silent_p.L104L|COQ4_uc010mxy.2_Silent_p.L104L	NM_016035	NP_057119	Q9Y3A0	COQ4_HUMAN	coenzyme Q4 homolog precursor	128					ubiquinone biosynthetic process	mitochondrial inner membrane					0						GCGAGTATCTCCGTTTCCTGG	0.572													4	33					0	0	0.000602214	0	0
OLFM1	10439	broad.mit.edu	37	9	137990199	137990199	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr9:137990199C>T	uc010nar.2	+	4	840	c.524C>T	c.(523-525)GCC>GTC	p.A175V	OLFM1_uc004cfl.3_Missense_Mutation_p.A157V	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	175	Potential.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		AAGGCCGATGCCAAATTGGTA	0.448													43	30					0	0	0.000680045	0	0
MSL3	10943	broad.mit.edu	37	X	11782035	11782035	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:11782035G>A	uc004cuw.2	+	8	991	c.886G>A	c.(886-888)GAA>AAA	p.E296K	MSL3_uc004cuv.1_Missense_Mutation_p.E296K|MSL3_uc004cux.2_Missense_Mutation_p.E237K|MSL3_uc011mig.1_Missense_Mutation_p.E147K|MSL3_uc011mih.1_Missense_Mutation_p.E284K|MSL3_uc004cuy.2_Missense_Mutation_p.E130K|MSL3_uc011mii.1_Missense_Mutation_p.E130K	NM_078629	NP_523353	Q8N5Y2	MS3L1_HUMAN	male-specific lethal 3-like 1 isoform a	296					histone H4-K16 acetylation|multicellular organismal development|transcription from RNA polymerase II promoter	MSL complex	DNA binding|methylated histone residue binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCAATTAAGGAAAGTGCCAC	0.373													14	79					0	0	0.000308642	0	0
CNKSR2	22866	broad.mit.edu	37	X	21450758	21450758	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:21450758A>T	uc004czx.1	+	3	293	c.257A>T	c.(256-258)AAA>ATA	p.K86I	CNKSR2_uc004czw.2_Missense_Mutation_p.K86I|CNKSR2_uc011mjn.1_Missense_Mutation_p.K86I|CNKSR2_uc011mjo.1_Missense_Mutation_p.K86I	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	86	CRIC.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						GAAAATCTAAAAACCCTTTCT	0.299													27	112					0	0	0.001512	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766703	27766703	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:27766703G>A	uc011mjy.1	+	1	1778	c.1691G>A	c.(1690-1692)CGA>CAA	p.R564Q		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						AAGTGGGAACGAGATGAAGAC	0.507													8	14					0	0	0.000157383	0	0
PRRG1	5638	broad.mit.edu	37	X	37312691	37312691	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:37312691C>T	uc004ddn.2	+	5	727	c.474C>T	c.(472-474)TCC>TCT	p.S158S	PRRG1_uc004ddo.2_Silent_p.S158S	NM_000950	NP_000941	O14668	TMG1_HUMAN	proline rich Gla (G-carboxyglutamic acid) 1	158	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	calcium ion binding			ovary(1)|breast(1)	2						GCTCAGATTCCGTCTCTACTC	0.517													10	56					0	0	0.000978159	0	0
BCOR	54880	broad.mit.edu	37	X	39932638	39932638	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:39932638G>A	uc004den.3	-	4	2253	c.1961C>T	c.(1960-1962)CCC>CTC	p.P654L	BCOR_uc004dep.3_Missense_Mutation_p.P654L|BCOR_uc004deo.3_Missense_Mutation_p.P654L|BCOR_uc004dem.3_Missense_Mutation_p.P654L|BCOR_uc004deq.3_Missense_Mutation_p.P654L	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	654	Pro-rich.				heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						GTAACTCCTGGGGTAGGGAAT	0.522													7	22					0	0	8.12818e-05	0	0
BMP15	9210	broad.mit.edu	37	X	50659023	50659023	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:50659023G>A	uc011mnw.1	+	2	595	c.595G>A	c.(595-597)GGA>AGA	p.G199R		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	199					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					GAATAACAAGGGACACAGGAT	0.453													13	62					0	0	0.000219431	0	0
MAGED1	9500	broad.mit.edu	37	X	51640148	51640148	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:51640148G>A	uc004dpm.2	+	4	1492	c.1397G>A	c.(1396-1398)CGA>CAA	p.R466Q	MAGED1_uc004dpn.2_Missense_Mutation_p.R522Q|MAGED1_uc004dpo.2_Missense_Mutation_p.R466Q	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	466					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GCACAGCCCCGAGATGTGGCC	0.547										Multiple Myeloma(10;0.10)			7	24					0	0	0.000274275	0	0
OTUD6A	139562	broad.mit.edu	37	X	69282687	69282687	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:69282687G>A	uc004dxu.1	+	1	347	c.313G>A	c.(313-315)GAG>AAG	p.E105K		NM_207320	NP_997203	Q7L8S5	OTU6A_HUMAN	OTU domain containing 6A	105										lung(1)|skin(1)	2						GGAGTCCGAGGAGAGGGAGCG	0.597													4	5					0	0	0.00024832	0	0
DGAT2L6	347516	broad.mit.edu	37	X	69397495	69397495	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:69397495G>A	uc004dxx.1	+	1	160	c.63G>A	c.(61-63)TGG>TGA	p.W21*		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	21					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						TTTTGCAATGGATCCCAGTCT	0.493													11	47					0	0	0.00185496	0	0
SLC7A3	84889	broad.mit.edu	37	X	70147773	70147773	+	Silent	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:70147773G>A	uc004dyn.2	-	6	1076	c.918C>T	c.(916-918)CTC>CTT	p.L306L	SLC7A3_uc004dyo.2_Silent_p.L306L	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	306	Helical; Name=7; (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	TCATCAGGGTGAGTGCAGAAG	0.527													6	23					0	0	0.00116845	0	0
COL4A6	1288	broad.mit.edu	37	X	107457458	107457458	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:107457458C>T	uc004enw.3	-	6	431	c.328G>A	c.(328-330)GGC>AGC	p.G110S	COL4A6_uc004env.3_Missense_Mutation_p.G109S|COL4A6_uc011msn.1_Missense_Mutation_p.G109S|COL4A6_uc010npk.2_Missense_Mutation_p.G109S	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	110	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						CCAGGGTGGCCCTGTTCAAAG	0.517									Alport_syndrome_with_Diffuse_Leiomyomatosis				14	77					0	0	0.00074312	0	0
COL4A6	1288	broad.mit.edu	37	X	107464486	107464486	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:107464486C>T	uc004enw.3	-	4	369	c.266G>A	c.(265-267)GGA>GAA	p.G89E	COL4A6_uc004env.3_Missense_Mutation_p.G88E|COL4A6_uc011msn.1_Missense_Mutation_p.G88E|COL4A6_uc010npk.2_Missense_Mutation_p.G88E	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	89	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TCCTTTTGGTCCATAAGGTCC	0.468									Alport_syndrome_with_Diffuse_Leiomyomatosis				22	106					0	0	0.000375601	0	0
PAK3	5063	broad.mit.edu	37	X	110439801	110439801	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:110439801C>T	uc004epa.2	+	13	1412	c.1385C>T	c.(1384-1386)TCT>TTT	p.S462F	PAK3_uc010npt.1_Missense_Mutation_p.S447F|PAK3_uc010npu.1_Missense_Mutation_p.S447F|PAK3_uc004eoy.1_Missense_Mutation_p.S202F|PAK3_uc004eoz.2_Missense_Mutation_p.S447F|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.S483F|PAK3_uc010npw.1_Missense_Mutation_p.S468F	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	462	Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						GATATCTGGTCTCTTGGAATT	0.448										TSP Lung(19;0.15)			9	83					0	0	0.000978159	0	0
TRPC5	7224	broad.mit.edu	37	X	111195594	111195594	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:111195594G>A	uc004epl.1	-	2	974	c.55C>T	c.(55-57)CCC>TCC	p.P19S	TRPC5_uc004epm.1_Missense_Mutation_p.P19S	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	19	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						ATTTGCAGGGGGATGCGGTCT	0.517													11	33					0	0	0.000978159	0	0
IL13RA2	3598	broad.mit.edu	37	X	114239865	114239865	+	Silent	SNP	C	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:114239865C>T	uc004epx.2	-	9	1136	c.1011G>A	c.(1009-1011)TCG>TCA	p.S337S	IL13RA2_uc010nqd.1_Silent_p.S337S	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	337	Extracellular (Potential).					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						AAGTTTTCTTCGATAGGTCTT	0.353													12	49					0	0	0.00185496	0	0
OCRL	4952	broad.mit.edu	37	X	128696746	128696746	+	Missense_Mutation	SNP	G	T	T			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:128696746G>T	uc004euq.2	+	12	1392	c.1227G>T	c.(1225-1227)TTG>TTT	p.L409F	OCRL_uc004eur.2_Missense_Mutation_p.L409F	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	409					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						TCCCGCAGTTGAACATCATGA	0.433													14	66					4.3838e-07	2.29666e-06	0.00185496	1	0
TFDP3	51270	broad.mit.edu	37	X	132351449	132351449	+	Missense_Mutation	SNP	A	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:132351449A>C	uc004exb.1	-	1	928	c.839T>G	c.(838-840)TTT>TGT	p.F280C		NM_016521	NP_057605	Q5H9I0	TFDP3_HUMAN	transcription factor Dp family, member 3	280	Involved in negatively regulating E2F activity.|DCB2 (By similarity).					transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GTTAAACTTAAACAGATATTC	0.493													14	127					0	0	0.000308642	0	0
SLITRK2	84631	broad.mit.edu	37	X	144905571	144905571	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:144905571G>A	uc004fcd.2	+	5	2618	c.1628G>A	c.(1627-1629)TGG>TAG	p.W543*	SLITRK2_uc010nsp.2_Nonsense_Mutation_p.W543*|SLITRK2_uc010nso.2_Nonsense_Mutation_p.W543*|SLITRK2_uc011mwq.1_Nonsense_Mutation_p.W543*|SLITRK2_uc011mwr.1_Nonsense_Mutation_p.W543*|SLITRK2_uc011mws.1_Nonsense_Mutation_p.W543*|SLITRK2_uc004fcg.2_Nonsense_Mutation_p.W543*|SLITRK2_uc011mwt.1_Nonsense_Mutation_p.W543*	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	543	Extracellular (Potential).|LRRCT 2.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAAAGACTGGACAGAACAT	0.517													12	58					0	0	0.00185496	0	0
CD99L2	83692	broad.mit.edu	37	X	149938784	149938784	+	Silent	SNP	T	C	C			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:149938784T>C	uc004fel.2	-	10	832	c.714A>G	c.(712-714)GAA>GAG	p.E238E	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_Silent_p.E189E|CD99L2_uc004fen.2_Silent_p.E166E|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_Silent_p.E165E	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	238	Cytoplasmic (Potential).				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CACCTTGGGGTTCCTCACATA	0.537													8	40					0	0	0.000673444	0	0
F8	2157	broad.mit.edu	37	X	154157824	154157824	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chrX:154157824G>A	uc004fmt.2	-	14	4412	c.4241C>T	c.(4240-4242)TCA>TTA	p.S1414L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1414	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AGATGGAAATGATGATACCTT	0.423													27	71					0	0	0.000720815	0	0
FUBP1	8880	broad.mit.edu	37	1	78426120	78426120	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr1:78426120delG	uc001dii.2	-	15	1494	c.1405delC	c.(1405-1407)CATfs	p.H469fs	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Frame_Shift_Del_p.H490fs	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	469	Pro-rich.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						GGAGGTCCATGGGGGCCTGGG	0.537													14	7	---	---	---	---					
ZNF774	342132	broad.mit.edu	37	15	90904315	90904316	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr15:90904315_90904316delTT	uc002bpk.3	+	4	1438_1439	c.1252_1253delTT	c.(1252-1254)TTTfs	p.F418fs		NM_001004309	NP_001004309	Q6NX45	ZN774_HUMAN	zinc finger protein 774	418	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(11;0.00551)|Lung NSC(78;0.0158)|all_lung(78;0.0331)		BRCA - Breast invasive adenocarcinoma(143;0.0224)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GAGCTCCCACTTTATTACCCAT	0.520													13	34	---	---	---	---					
TFPI	7035	broad.mit.edu	37	2	188348945	188348946	+	Splice_Site	INS	-	G	G			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr2:188348945_188348946insG	uc002upx.2	-	6	569	c.536_splice	c.e6-1	p.P179_splice	TFPI_uc002upy.2_Splice_Site_p.P179_splice|TFPI_uc002upz.2_Splice_Site_p.P175_splice|TFPI_uc002uqa.2_Splice_Site_p.P179_splice|TFPI_uc002uqb.2_Splice_Site_p.P179_splice	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a						blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	AACCATTCGCTGGAAAAAAATA	0.391													11	56	---	---	---	---					
TBC1D5	9779	broad.mit.edu	37	3	17279855	17279855	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr3:17279855delT	uc003cbf.2	-	17	3053	c.1388delA	c.(1387-1389)AATfs	p.N463fs	TBC1D5_uc010heu.2_Frame_Shift_Del_p.N50fs|TBC1D5_uc010hev.2_Frame_Shift_Del_p.N463fs|TBC1D5_uc003cbe.2_Frame_Shift_Del_p.N463fs|TBC1D5_uc010hew.1_Frame_Shift_Del_p.N415fs	NM_014744	NP_055559	Q92609	TBCD5_HUMAN	TBC1 domain family, member 5 isoform b	463						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						TCTTCCAAAATTAATCAGGCT	0.433													20	27	---	---	---	---					
ANGPT2	285	broad.mit.edu	37	8	6378797	6378798	+	Frame_Shift_Ins	INS	-	T	T	rs34047276		TCGA-HR-A2OG-01A-21D-A197-08	TCGA-HR-A2OG-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	82ce79a8-7fec-493f-9ea5-5609d1d159f9	64b91cae-70a9-43b6-aec2-db6fe2d66a93	g.chr8:6378797_6378798insT	uc003wqj.3	-	4	1029_1030	c.700_701insA	c.(700-702)ATAfs	p.I234fs	MCPH1_uc003wqi.2_Intron|ANGPT2_uc003wqk.3_Frame_Shift_Ins_p.I234fs|ANGPT2_uc010lri.2_Frame_Shift_Ins_p.I182fs|ANGPT2_uc003wql.3_Frame_Shift_Ins_p.I234fs	NM_001147	NP_001138	O15123	ANGP2_HUMAN	angiopoietin 2 isoform a precursor	234	Potential.				angiogenesis|blood coagulation|leukocyte migration|negative regulation of blood vessel endothelial cell migration|negative regulation of positive chemotaxis|Tie receptor signaling pathway	extracellular space	metal ion binding|receptor tyrosine kinase binding			upper_aerodigestive_tract(1)	1		Hepatocellular(245;0.0663)		Colorectal(4;0.0142)|READ - Rectum adenocarcinoma(4;0.19)|COAD - Colon adenocarcinoma(4;0.226)		GGCAGTCACTATTTTTTTTTCT	0.366													8	103	---	---	---	---					
