Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8418587	8418587	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:8418587G>A	uc001ape.2	-	21	4818	c.4008C>T	c.(4006-4008)CCC>CCT	p.P1336P	RERE_uc001apf.2_Silent_p.P1336P|RERE_uc001apd.2_Silent_p.P782P	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1336					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CTGGGTGCAGGGGGTCCAGCT	0.697000													4	16					0	0	0.014758	0	0
MST1P2	11209	broad.mit.edu	37	1	16974511	16974511	+	RNA	SNP	G	A	A	rs58679574	by1000genomes	TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:16974511G>A	uc009vow.2	+	5		c.1321G>A			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GGGTAGTCACGGGCTTAGGGC	0.652000													8	76					0	0	0.004482	0	0
PADI1	29943	broad.mit.edu	37	1	17548845	17548845	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:17548845C>T	uc001bah.1	+	2	245	c.153C>T	c.(151-153)TTC>TTT	p.F51F		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	51					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	TGGAGGTCTTCATGGTCTACA	0.567000													31	97					0	0	0.009535	0	0
LDLRAP1	26119	broad.mit.edu	37	1	25883675	25883675	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:25883675G>A	uc001bkl.3	+	4	490	c.376G>A	c.(376-378)GAC>AAC	p.D126N		NM_015627	NP_056442	Q5SW96	ARH_HUMAN	low density lipoprotein receptor adaptor protein	126	PID.				amyloid precursor protein metabolic process|cholesterol homeostasis|cholesterol metabolic process|positive regulation of receptor-mediated endocytosis|receptor internalization|receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport|regulation of establishment of protein localization in plasma membrane|regulation of protein binding	basal plasma membrane|cytosol|early endosome|internal side of plasma membrane|neurofilament|recycling endosome	beta-amyloid binding|clathrin binding|low-density lipoprotein particle receptor binding|phosphatidylinositol-4,5-bisphosphate binding|phosphotyrosine binding|protein binding, bridging|protein complex binding|receptor signaling complex scaffold activity|signaling adaptor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.63e-26)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000728)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000969)|GBM - Glioblastoma multiforme(114;0.00914)|READ - Rectum adenocarcinoma(331;0.0649)		CAAGATGCACGACAAGGTGTT	0.592000													20	49					0	0	0.012319	0	0
LCK	3932	broad.mit.edu	37	1	32742228	32742228	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:32742228A>G	uc001bux.2	+	9	943	c.805A>G	c.(805-807)AAG>GAG	p.K269E	LCK_uc001buy.2_Missense_Mutation_p.K269E|LCK_uc001buz.2_Missense_Mutation_p.K269E|LCK_uc010ohc.1_Missense_Mutation_p.K313E|LCK_uc001bva.2_Missense_Mutation_p.K276E	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	269	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding	p.K269K(1)		lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CGGGCACACGAAGGTGGCGGT	0.647000			T	TRB@	T-ALL								4	84					0	0	0.021553	0	0
GJB3	2707	broad.mit.edu	37	1	35250960	35250960	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:35250960C>T	uc001bxx.2	+	2	1212	c.597C>T	c.(595-597)ATC>ATT	p.I199I	GJB3_uc001bxy.2_Silent_p.I199I|GJB3_uc001bxz.3_Silent_p.I199I|uc010ohs.1_RNA	NM_024009	NP_076872	O75712	CXB3_HUMAN	connexin 31	199	Helical; (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CCGTCTGCATCGTACTCACCA	0.612000													9	42					0	0	0.006214	0	0
CDCA8	55143	broad.mit.edu	37	1	38158627	38158627	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:38158627G>A	uc001cbr.2	+	3	252	c.145G>A	c.(145-147)GAG>AAG	p.E49K	C1orf109_uc010oig.1_5'Flank|C1orf109_uc001cbo.2_5'Flank|C1orf109_uc001cbp.2_5'Flank|C1orf109_uc001cbq.1_5'Flank|CDCA8_uc001cbs.2_Missense_Mutation_p.E49K|CDCA8_uc010oih.1_5'UTR	NM_018101	NP_060571	Q53HL2	BOREA_HUMAN	cell division cycle associated 8	49	Required for centromere localization.|Required for interaction with SENP3.|Required to form a minimal CPC core complex that localizes to the central spindle and midbody and properly executes the role of the CPC during cytokinesis.|Required for interaction with INCENP.|Required for interaction with INCENP and BIRC5.				cell division|chromosome organization|mitotic metaphase|mitotic prometaphase	chromosome passenger complex|chromosome, centromeric region|cytosol|nucleolus|spindle	protein binding			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCTCCTCAAGGAGGTGGATAA	0.567000													17	46					0	0	0.028581	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047174	42047174	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:42047174G>A	uc001cgz.3	-	4	4508	c.3295C>T	c.(3295-3297)CCG>TCG	p.P1099S	HIVEP3_uc001cha.3_Missense_Mutation_p.P1099S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1099					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TTGCCTCCCGGGGGTCCACCA	0.612000													23	63					0	0	0.014323	0	0
LASS2	29956	broad.mit.edu	37	1	150940901	150940901	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:150940901G>A	uc001evy.2	-	3	648	c.261C>T	c.(259-261)TTC>TTT	p.F87F	LASS2_uc001evz.2_Silent_p.F87F|LASS2_uc009wmh.2_5'UTR	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	87	Cytoplasmic (Potential).|Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGGTCAGGTAGAAATGTTCCA	0.567000													16	33					0	0	0.024245	0	0
PBXIP1	57326	broad.mit.edu	37	1	154919984	154919984	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:154919984T>C	uc001ffr.2	-	9	838	c.779A>G	c.(778-780)GAC>GGC	p.D260G	PBXIP1_uc001ffs.2_Missense_Mutation_p.D231G|PBXIP1_uc010pep.1_Missense_Mutation_p.D105G	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	260					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGGACACTGTCAGGAGGCAC	0.622000													18	84					0	0	0.008871	0	0
OR10T2	128360	broad.mit.edu	37	1	158368507	158368507	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:158368507G>A	uc010pih.1	-	1	750	c.750C>T	c.(748-750)GTC>GTT	p.V250V		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AGCCATAGTGGACAAAGACCA	0.512000													17	58					0	0	0.004990	0	0
SPTA1	6708	broad.mit.edu	37	1	158650408	158650408	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:158650408C>T	uc001fst.1	-	5	842	c.643G>A	c.(643-645)GTT>ATT	p.V215I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	215	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCACTTCAACAACTCTCCCT	0.468000													44	104					0	0	0.014410	0	0
PVRL4	81607	broad.mit.edu	37	1	161043573	161043573	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:161043573C>T	uc001fxo.2	-	7	1469	c.1170G>A	c.(1168-1170)CTG>CTA	p.L390L	PVRL4_uc010pjy.1_Silent_p.L69L|PVRL4_uc010pjz.1_Silent_p.L124L	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	390	Cytoplasmic (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TGGTCAGGGTCAGCTCCTCCT	0.607000													6	50					0	0	0.021553	0	0
POU2F1	5451	broad.mit.edu	37	1	167339406	167339406	+	Silent	SNP	C	T	T	rs34899926	byFrequency	TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:167339406C>T	uc001gec.2	+	5	330	c.168C>T	c.(166-168)CTC>CTT	p.L56L	POU2F1_uc010plg.1_RNA|POU2F1_uc001ged.2_Silent_p.L54L|POU2F1_uc001gee.2_Silent_p.L56L|POU2F1_uc010plh.1_Silent_p.L56L|POU2F1_uc001gef.2_Silent_p.L68L|POU2F1_uc001geg.2_5'Flank	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	56					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						AGGTCCAACTCGCTGGAACAA	0.378000													18	46					0	0	0.010504	0	0
DNM3	26052	broad.mit.edu	37	1	172356371	172356371	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:172356371G>A	uc001gie.2	+	19	2333	c.2157G>A	c.(2155-2157)CGG>CGA	p.R719R	DNM3_uc001gif.2_Silent_p.R715R|DNM3_uc001gih.1_Silent_p.R75R	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	725	GED.				endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						CTCAGCGCCGGGATGAGATGC	0.512000													24	71					0	0	0.006320	0	0
TNR	7143	broad.mit.edu	37	1	175331865	175331865	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:175331865C>T	uc001gkp.1	-	12	2869	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	TNR_uc009wwu.1_Missense_Mutation_p.E930K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	930	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					AGGCTGATTTCGTATTCGGTA	0.532000													25	94					0	0	0.016522	0	0
IRF6	3664	broad.mit.edu	37	1	209974754	209974754	+	Missense_Mutation	SNP	G	A	A	rs28942093		TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:209974754G>A	uc001hhq.1	-	3	268	c.5C>T	c.(4-6)GCC>GTC	p.A2V	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.A2V	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	2					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		GGGGTGGAGGGCCATGATCTG	0.597000										HNSCC(57;0.16)			14	77					0	0	0.028581	0	0
OR2L8	391190	broad.mit.edu	37	1	248112603	248112603	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:248112603G>A	uc001idt.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CAGGGTCTTGGATCATAGGCT	0.443000													12	241					0	0	0.004990	0	0
OR2L3	391192	broad.mit.edu	37	1	248224427	248224427	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr1:248224427G>A	uc001idx.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CAGGGTCTTGGATCATAGGCT	0.433000													19	81					0	0	0.007413	0	0
ITGA8	8516	broad.mit.edu	37	10	15688978	15688978	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr10:15688978C>T	uc001ioc.1	-	12	1074	c.1074G>A	c.(1072-1074)GGG>GGA	p.G358G	ITGA8_uc010qcb.1_Silent_p.G343G	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	358	Extracellular (Potential).|FG-GAP 5.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GGTAGATTTGCCCTACTTCTC	0.507000													14	56					0	0	0.024245	0	0
PTEN	5728	broad.mit.edu	37	10	89653814	89653815	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr10:89653814_89653815CC>TT	uc001kfb.2	+	3	1143_1144	c.112_113CC>TT	c.(112-114)CCT>TTT	p.P38F		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	38	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.P38S(6)|p.?(4)|p.Y27_N212>Y(2)|p.Y27fs*1(2)|p.P38L(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TATGGGATTTCCTGCAGAAAGA	0.287000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			11	26					0	0	0.004672	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454741	96454741	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr10:96454741C>T	uc001kjv.3	+	4	875	c.549C>T	c.(547-549)TTC>TTT	p.F183F	CYP2C18_uc001kjw.3_Silent_p.F183F|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	183					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CTGTTATTTTCCATGATCGAT	0.393000													14	38					0	0	0.028581	0	0
CYP2C8	1558	broad.mit.edu	37	10	96805591	96805591	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr10:96805591G>A	uc001kkb.2	-	6	1032	c.937C>T	c.(937-939)CTG>TTG	p.L313L	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.L243L|CYP2C8_uc010qob.1_Silent_p.L227L|CYP2C8_uc010qoc.1_Silent_p.L211L|CYP2C8_uc010qod.1_Silent_p.L227L	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	313					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TGCTTCAGCAGGAGCAGGAGT	0.453000													18	70					0	0	0.016522	0	0
RRP12	23223	broad.mit.edu	37	10	99125892	99125892	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr10:99125892T>C	uc001knf.2	-	29	3629	c.3490A>G	c.(3490-3492)AAG>GAG	p.K1164E	RRP12_uc001kne.2_Missense_Mutation_p.K179E|RRP12_uc009xvl.2_Missense_Mutation_p.K281E|RRP12_uc009xvm.2_Missense_Mutation_p.K882E|RRP12_uc010qou.1_Missense_Mutation_p.K1103E|RRP12_uc009xvn.2_Missense_Mutation_p.K1064E	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1164						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		TCCTCCATCTTGTTGCCGTCT	0.597000													4	94					0	0	0.014758	0	0
LOC338651	338651	broad.mit.edu	37	11	1619166	1619166	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:1619166C>T	uc009ycx.1	+	2	1017	c.266C>T	c.(265-267)CCT>CTT	p.P89L	LOC338651_uc001ltt.1_RNA|KRTAP5-2_uc001ltv.2_Silent_p.K105K	NR_021489				SubName: Full=cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;          EC=2.7.7.6;												0						CACAGCCCCCCTTGGAACCCC	0.652000													27	55					0	0	0.006320	0	0
OR52R1	119695	broad.mit.edu	37	11	4824685	4824685	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:4824685C>T	uc010qym.1	-	1	1163	c.1163G>A	c.(1162-1164)GGA>GAA	p.G388E		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCCACAACATCCTTGGATAAC	0.448000													17	40					0	0	0.004990	0	0
OR1S2	219958	broad.mit.edu	37	11	57971240	57971240	+	Silent	SNP	C	T	T	rs145253819		TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:57971240C>T	uc010rkb.1	-	1	414	c.414G>A	c.(412-414)GCG>GCA	p.A138A		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GGTGGCAGATCGCCACAAAGT	0.463000													29	60					0	0	0.007291	0	0
OR10W1	81341	broad.mit.edu	37	11	58035171	58035171	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:58035171G>A	uc001nmq.1	-	1	562	c.160C>T	c.(160-162)CTG>TTG	p.L54L		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	54	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AGGCTGCCCAGGAAATAGTAC	0.493000													17	46					0	0	0.006122	0	0
SLC29A2	3177	broad.mit.edu	37	11	66136997	66136997	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:66136997G>A	uc001oht.2	-	3	347	c.118C>T	c.(118-120)CAG>TAG	p.Q40*	SLC29A2_uc001ohs.2_5'UTR|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_5'UTR|SLC29A2_uc001ohu.2_Nonsense_Mutation_p.Q40*|SLC29A2_uc001ohv.2_Nonsense_Mutation_p.Q40*|uc001ohw.1_RNA	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	40					cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						AGTCGCGCCTGGAAGTACTGC	0.502000													32	100					0	0	0.017118	0	0
RNF169	254225	broad.mit.edu	37	11	74545777	74545777	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:74545777G>A	uc001ovl.3	+	5	912	c.899G>A	c.(898-900)AGA>AAA	p.R300K	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	300							zinc ion binding			ovary(1)	1						GCCCAGGAAAGAGCGAAGAGC	0.493000													15	30					0	0	0.004990	0	0
HTR3A	3359	broad.mit.edu	37	11	113848577	113848577	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:113848577C>T	uc010rxb.1	+	2	403	c.170C>T	c.(169-171)CCC>CTC	p.P57L	HTR3A_uc010rxa.1_Missense_Mutation_p.P57L|HTR3A_uc009yyx.2_RNA|HTR3A_uc010rxc.1_Missense_Mutation_p.P36L	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	51	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	GGTGTGCGCCCCGTGAGGGAC	0.592000													16	50					0	0	0.006122	0	0
GRIK4	2900	broad.mit.edu	37	11	120707551	120707551	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:120707551C>T	uc001pxn.2	+	8	1029	c.742C>T	c.(742-744)CTG>TTG	p.L248L	GRIK4_uc009zav.1_Silent_p.L248L|GRIK4_uc009zaw.1_Silent_p.L248L|GRIK4_uc009zax.1_Silent_p.L248L	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	248	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	CTTCACTAATCTGGTAAGATG	0.453000													22	58					0	0	0.014323	0	0
IGSF9B	22997	broad.mit.edu	37	11	133805550	133805550	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr11:133805550C>T	uc001qgx.3	-	7	1160	c.929G>A	c.(928-930)GGG>GAG	p.G310E	IGSF9B_uc001qgy.1_Missense_Mutation_p.G152E	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	310	Extracellular (Potential).|Ig-like 3.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGGGGAGCGCCCCAGGCTGTT	0.637000													3	11					0	0	0.004672	0	0
CLECL1	160365	broad.mit.edu	37	12	9885648	9885648	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:9885648G>A	uc001qwj.2	-	1	213	c.213C>T	c.(211-213)TTC>TTT	p.F71F		NM_172004	NP_742001	Q8IZS7	CLCL1_HUMAN	type II transmembrane protein DCAL1	71	Helical; Signal-anchor for type II membrane protein; (Potential).					integral to membrane|plasma membrane	sugar binding				0						AAAAGAGAGAGAAGACCACAA	0.428000													19	49					0	0	0.010504	0	0
AQP2	359	broad.mit.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	C	C	rs104894331		TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:50344816A>C	uc001rvn.2	+	1	293	c.203A>C	c.(202-204)AAC>ACC	p.N68T		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	68	Cytoplasmic (Potential).|NPA 1.		N -> S (in ANDI).		cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GCCCACATCAACCCTGCCGTG	0.662000													7	24					0	0	0.012319	0	0
GTSF1	121355	broad.mit.edu	37	12	54854188	54854188	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:54854188G>A	uc001sgb.2	-	7	546	c.460C>T	c.(460-462)CTG>TTG	p.L154L		NM_144594	NP_653195	Q8WW33	GTSF1_HUMAN	gametocyte specific factor 1	154							metal ion binding				0		Myeloproliferative disorder(1001;0.00452)				ACATACGGCAGAGATTTGGGA	0.388000													21	20					0	0	0.018920	0	0
METTL7B	196410	broad.mit.edu	37	12	56077753	56077753	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:56077753G>A	uc010spr.1	+	2	864	c.655G>A	c.(655-657)GAA>AAA	p.E219K		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	219							methyltransferase activity				0						CCAGTTCTCCGAAATCCAAAT	0.542000													42	67					0	0	0.025465	0	0
IKBIP	121457	broad.mit.edu	37	12	99038328	99038328	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:99038328G>A	uc001tfv.2	-	1	262	c.152C>T	c.(151-153)TCG>TTG	p.S51L	APAF1_uc001tfy.2_5'Flank|APAF1_uc001tfz.2_5'Flank|APAF1_uc001tga.2_5'Flank|APAF1_uc001tgb.2_5'Flank|APAF1_uc001tgc.2_5'Flank|IKBIP_uc001tfw.2_Missense_Mutation_p.S51L|IKBIP_uc001tfx.2_Missense_Mutation_p.S51L	NM_201612	NP_963906	Q70UQ0	IKIP_HUMAN	IKK interacting protein isoform 2	51	Helical; (Potential).				induction of apoptosis|response to X-ray	endoplasmic reticulum membrane|integral to membrane	protein binding				0						CGTCCCCAGCGACAGCAGGCT	0.751000													5	9					0	0	0.014758	0	0
SLC17A8	246213	broad.mit.edu	37	12	100787176	100787176	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:100787176C>T	uc010svi.1	+	4	816	c.503C>T	c.(502-504)TCG>TTG	p.S168L	SLC17A8_uc009ztx.2_Missense_Mutation_p.S168L	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	168	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						TTCTTAACATCGACTCTGAAC	0.478000													18	46					0	0	0.004990	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20221047	20221047	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr13:20221047C>T	uc001umh.2	+	3	843	c.834C>T	c.(832-834)GAC>GAT	p.D278D	MPHOSPH8_uc001umf.1_Silent_p.D278D|MPHOSPH8_uc001umg.2_Silent_p.D278D|MPHOSPH8_uc001umi.2_5'UTR	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	278					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		CAGAGGATGACAGTGAAGGGC	0.388000													20	100					0	0	0.010504	0	0
CDC16	8881	broad.mit.edu	37	13	115002333	115002333	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr13:115002333A>G	uc001vuk.1	+	3	361	c.163A>G	c.(163-165)AGA>GGA	p.R55G	CDC16_uc010tkm.1_Missense_Mutation_p.R55G|CDC16_uc001vul.1_Missense_Mutation_p.R55G|CDC16_uc001vum.1_5'UTR|CDC16_uc001vun.1_Missense_Mutation_p.R54G|CDC16_uc001vuo.1_Missense_Mutation_p.R54G	NM_003903	NP_003894	Q13042	CDC16_HUMAN	anaphase-promoting complex, subunit 6	55					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cell proliferation|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	binding				0	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)			ACAATATCACAGAGCCGCCCA	0.413000													19	50					0	0	0.006122	0	0
PSMB11	122706	broad.mit.edu	37	14	23512032	23512032	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:23512032G>A	uc010ake.1	+	1	657	c.598G>A	c.(598-600)GAA>AAA	p.E200K		NM_001099780	NP_001093250	A5LHX3	PSB11_HUMAN	proteasome beta 11 subunit precursor	200					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00643)		GAGCACCCAGGAAGCCTACGC	0.642000													14	31					0	0	0.024245	0	0
C14orf39	317761	broad.mit.edu	37	14	60921813	60921814	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:60921813_60921814GG>AA	uc001xez.3	-	16	1518_1519	c.1408_1409CC>TT	c.(1408-1410)CCT>TTT	p.P470F	C14orf39_uc010apo.2_Missense_Mutation_p.P181F	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	470										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		AGAAAGTCCAGGGGATTCCTTT	0.292000													21	71					0	0	0.004672	0	0
GPHB5	122876	broad.mit.edu	37	14	63784382	63784382	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:63784382C>T	uc010apu.2	-	1	182	c.182G>A	c.(181-183)GGG>GAG	p.G61E	GPHB5_uc001xgc.2_Missense_Mutation_p.G51E	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		CACAGCGACCCCAGCAGGCAT	0.552000													5	33					0	0	0.021553	0	0
BEGAIN	57596	broad.mit.edu	37	14	101004532	101004532	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:101004532C>A	uc010txa.1	-	6	1702	c.1556G>T	c.(1555-1557)GGG>GTG	p.G519V	BEGAIN_uc001yhp.2_Missense_Mutation_p.G455V|BEGAIN_uc001yhq.2_Missense_Mutation_p.G519V	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	519						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				GTCCCCGTCCCCCCCCTCGCT	0.731000													4	7					2.56e-06	8.39442e-06	0.009096	1	0
PPP1R13B	23368	broad.mit.edu	37	14	104263804	104263804	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:104263804G>A	uc001yof.1	-	2	344	c.61C>T	c.(61-63)CCT>TCT	p.P21S	PPP1R13B_uc001yog.1_5'UTR	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	21					apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				GGTGTTATAGGAACTTCTGTT	0.373000													4	39					0	0	0.009096	0	0
RYR3	6263	broad.mit.edu	37	15	33955848	33955848	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:33955848C>T	uc001zhi.2	+	36	5599	c.5529C>T	c.(5527-5529)TTC>TTT	p.F1843F	RYR3_uc010bar.2_Silent_p.F1843F	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1843	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATCAGAAGTTCCGCTACAATG	0.572000													4	17					0	0	0.009096	0	0
HDC	3067	broad.mit.edu	37	15	50534764	50534764	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:50534764G>A	uc001zxz.2	-	12	1788	c.1682C>T	c.(1681-1683)ACC>ATC	p.T561I	HDC_uc001zxy.2_Missense_Mutation_p.T304I|HDC_uc010uff.1_Missense_Mutation_p.T528I	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	561					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	CTTGTGCTTGGTGGCATCTGG	0.537000													17	94					0	0	0.028581	0	0
CLK3	1198	broad.mit.edu	37	15	74911677	74911677	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:74911677C>T	uc010uln.1	+	2	1045	c.584C>T	c.(583-585)TCT>TTT	p.S195F	CLK3_uc002ayg.3_Missense_Mutation_p.S47F|CLK3_uc002ayh.3_5'UTR|CLK3_uc010ulm.1_Missense_Mutation_p.S195F|CLK3_uc002ayj.3_Missense_Mutation_p.S47F|CLK3_uc002ayk.3_5'UTR	NM_001130028	NP_001123500	P49761	CLK3_HUMAN	CDC-like kinase 3 isoform a	195	Arg-rich.					acrosomal vesicle|nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)	2						CCACGAAGATCTCGGTCCAGA	0.577000													15	55					0	0	0.028581	0	0
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:78211548T>C	uc010bky.2	-	11	983	c.219A>G	c.(217-219)CAA>CAG	p.Q73Q		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CCACCTGGGATTGGAGCTTTC	0.562000													4	150					0	0	0.014758	0	0
IREB2	3658	broad.mit.edu	37	15	78782786	78782786	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:78782786C>T	uc002bdr.2	+	17	2261	c.2099C>T	c.(2098-2100)TCC>TTC	p.S700F	IREB2_uc010unb.1_Missense_Mutation_p.S450F	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	700							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		CGGTGGAATTCCTTAGAAGCA	0.363000													13	47					0	0	0.020292	0	0
AGBL1	123624	broad.mit.edu	37	15	86940643	86940643	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:86940643G>A	uc002blz.1	+	17	2363	c.2283G>A	c.(2281-2283)GAG>GAA	p.E761E		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	761		Zinc (By similarity).			C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						ATCCAGGAGAGAGCAATGCCA	0.443000													9	49					0	0	0.006214	0	0
C15orf42	90381	broad.mit.edu	37	15	90137712	90137712	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:90137712C>T	uc002boe.2	+	6	1608	c.1608C>T	c.(1606-1608)TGC>TGT	p.C536C		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	536					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			TAATACATTGCCTTGCCGAGC	0.403000													12	55					0	0	0.010729	0	0
TTC23	64927	broad.mit.edu	37	15	99758900	99758900	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:99758900C>T	uc002bur.2	-	7	1005	c.474G>A	c.(472-474)GAG>GAA	p.E158E	TTC23_uc002bus.2_Silent_p.E158E|TTC23_uc002but.2_Silent_p.E158E|TTC23_uc002buu.2_Silent_p.E158E|TTC23_uc002buv.2_Silent_p.E158E|TTC23_uc002bux.2_Silent_p.E158E|TTC23_uc002buw.2_Silent_p.E158E|TTC23_uc010boq.2_RNA|TTC23_uc002buy.2_Silent_p.E158E|TTC23_uc010bor.2_Silent_p.E158E|TTC23_uc002buz.2_Silent_p.E158E	NM_022905	NP_075056	Q5W5X9	TTC23_HUMAN	tetratricopeptide repeat domain 23	158	TPR 2.						binding				0	all_cancers(4;1.49e-13)|Lung NSC(78;0.000545)|all_lung(78;0.00121)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		all cancers(5;8.11e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00215)			TTGTCAAATTCTCTGCAGCTT	0.393000													33	147					0	0	0.013726	0	0
ACSM2B	348158	broad.mit.edu	37	16	20575994	20575994	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr16:20575994C>T	uc002dhj.3	-	3	384	c.174G>A	c.(172-174)GAG>GAA	p.E58E	ACSM2B_uc002dhk.3_Silent_p.E58E|ACSM2B_uc010bwf.1_Silent_p.E58E	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	58					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CCATTACCTTCTCCATGTCAG	0.368000													7	24					0	0	0.003080	0	0
ACSM2B	348158	broad.mit.edu	37	16	20575996	20575996	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr16:20575996C>T	uc002dhj.3	-	3	382	c.172G>A	c.(172-174)GAG>AAG	p.E58K	ACSM2B_uc002dhk.3_Missense_Mutation_p.E58K|ACSM2B_uc010bwf.1_Missense_Mutation_p.E58K	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	58					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						ATTACCTTCTCCATGTCAGCC	0.373000													7	25					0	0	0.003080	0	0
ACSM1	116285	broad.mit.edu	37	16	20702464	20702464	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr16:20702464G>A	uc002dhm.1	-	1	115	c.47C>T	c.(46-48)TCC>TTC	p.S16F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.S16F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	16					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GTTGTGGAAGGATTTGTGGAT	0.522000													43	183					0	0	0.011902	0	0
RBL2	5934	broad.mit.edu	37	16	53524060	53524060	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr16:53524060A>G	uc002ehi.3	+	22	3386	c.3268A>G	c.(3268-3270)AGT>GGT	p.S1090G	RBL2_uc002ehj.2_Missense_Mutation_p.S800G|RBL2_uc010vgw.1_Missense_Mutation_p.S469G	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	1090					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding	p.S1090I(1)		ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						AGAAATTAATAGTATGATACG	0.333000													3	227					0	0	0.004672	0	0
CDH5	1003	broad.mit.edu	37	16	66424357	66424357	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr16:66424357G>A	uc002eom.3	+	6	989	c.833G>A	c.(832-834)GGC>GAC	p.G278D	CDH5_uc002eon.1_Missense_Mutation_p.G278D	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	278	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		ACCTCTGTGGGCTCTCTGTTT	0.532000													9	42					0	0	0.008291	0	0
PELP1	27043	broad.mit.edu	37	17	4577850	4577851	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:4577850_4577851CT>TA	uc002fyi.3	-	13	1762_1763	c.1536_1537AG>TA	c.(1534-1539)AAAGGG>AATAGG	p.512_513KG>NR	PELP1_uc010vsf.1_Missense_Mutation_p.365_366KG>NR	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	512_513					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TTGCTATCCCCTTTCCGGTGGC	0.629000													12	36					0	0	0.004672	0	0
MYH4	4622	broad.mit.edu	37	17	10359836	10359836	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:10359836C>T	uc002gmn.2	-	17	2045	c.1934G>A	c.(1933-1935)GGT>GAT	p.G645D	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	645	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GAAAGAAGAACCCTTCTTTTT	0.328000													8	66					0	0	0.004482	0	0
MYH2	4620	broad.mit.edu	37	17	10432012	10432012	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:10432012C>A	uc010coi.2	-	27	3867	c.3739G>T	c.(3739-3741)GCC>TCC	p.A1247S	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.A1247S|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1247	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGTACCTTGGCTTTGGAGACC	0.303000													24	98					2.44723e-14	8.11905e-14	0.024334	1	0
DNAH9	1770	broad.mit.edu	37	17	11700945	11700945	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:11700945G>A	uc002gne.2	+	43	8323	c.8255G>A	c.(8254-8256)AGC>AAC	p.S2752N	DNAH9_uc010coo.2_Missense_Mutation_p.S2046N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2752					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGACCCAAAGCCCGAACCTG	0.507000													6	26					0	0	0.003080	0	0
CSF3	1440	broad.mit.edu	37	17	38172816	38172816	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:38172816G>A	uc002htp.2	+	4	431	c.391G>A	c.(391-393)GAG>AAG	p.E131K	CSF3_uc002hto.2_Missense_Mutation_p.E128K|CSF3_uc002htq.2_Missense_Mutation_p.E124K|CSF3_uc010wep.1_Missense_Mutation_p.E88K	NM_000759	NP_000750	P09919	CSF3_HUMAN	colony stimulating factor 3 isoform a precursor	131					cytokine-mediated signaling pathway|granulocyte differentiation|immune response|positive regulation of cell proliferation	extracellular space	cytokine activity|enzyme binding|granulocyte colony-stimulating factor receptor binding|growth factor activity			ovary(1)	1	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	GATCTCCCCCGAGTTGGGTCC	0.627000													24	85					0	0	0.016522	0	0
AARSD1	80755	broad.mit.edu	37	17	41108528	41108528	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:41108528T>C	uc002icc.2	-	5	442	c.439A>G	c.(439-441)ACT>GCT	p.T147A	AARSD1_uc002icd.2_Missense_Mutation_p.T260A|AARSD1_uc002ice.2_Missense_Mutation_p.T230A|AARSD1_uc002icf.2_Missense_Mutation_p.T321A|AARSD1_uc010whg.1_Missense_Mutation_p.T321A|AARSD1_uc010cyu.1_Missense_Mutation_p.T147A	NM_025267	NP_079543	Q9BTE6	AASD1_HUMAN	alanyl-tRNA synthetase domain containing 1	147					alanyl-tRNA aminoacylation	cytoplasm	alanine-tRNA ligase activity|ATP binding|metal ion binding|nucleic acid binding				0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		TGCTCTGCAGTCATAGAGGGG	0.433000													5	39					0	0	0.021553	0	0
MPP2	4355	broad.mit.edu	37	17	41958897	41958897	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:41958897C>T	uc010wip.1	-	7	934	c.877G>A	c.(877-879)GAA>AAA	p.E293K	MPP2_uc002ien.1_Missense_Mutation_p.E265K|MPP2_uc010wim.1_Missense_Mutation_p.E237K|MPP2_uc002ieo.1_Missense_Mutation_p.E248K|MPP2_uc010win.1_Missense_Mutation_p.E109K|MPP2_uc010wio.1_Missense_Mutation_p.E237K	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	272	SH3.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		AGGCCTGCTTCCTTGCAGGGG	0.602000													16	48					0	0	0.004990	0	0
RNF213	57674	broad.mit.edu	37	17	78316946	78316946	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr17:78316946G>A	uc002jyh.1	+	2	446	c.223G>A	c.(223-225)GTG>ATG	p.V75M		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GTCTCTGTACGTGAAGAGGTT	0.284000													10	17					0	0	0.010729	0	0
HCN2	610	broad.mit.edu	37	19	590414	590414	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:590414G>A	uc002lpe.2	+	1	522	c.469G>A	c.(469-471)GGC>AGC	p.G157S		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	157	Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ggagccgcgcggcAGCCAGGC	0.353000													5	13					0	0	0.021553	0	0
MUC16	94025	broad.mit.edu	37	19	8996340	8996340	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:8996340G>A	uc002mkp.2	-	61	41436	c.41232C>T	c.(41230-41232)AAC>AAT	p.N13744N	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.N561N|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAGGCTGTCGTTGTCCAGGG	0.542000													37	133					0	0	0.013114	0	0
MUC16	94025	broad.mit.edu	37	19	9059447	9059447	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:9059447G>A	uc002mkp.2	-	3	28203	c.27999C>T	c.(27997-27999)ATC>ATT	p.I9333I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9335	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGGGCCTGGGATGGATGTTC	0.498000													31	113					0	0	0.012213	0	0
ZNF121	7675	broad.mit.edu	37	19	9677580	9677580	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:9677580G>A	uc010xkp.1	-	4	441	c.209C>T	c.(208-210)GCC>GTC	p.A70V	ZNF121_uc010dwt.2_Missense_Mutation_p.A70V|ZNF121_uc010xkq.1_Missense_Mutation_p.A70V	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	70					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAGGCTGAAGGCTTTTCTGCA	0.448000													15	50					0	0	0.028581	0	0
C19orf66	55337	broad.mit.edu	37	19	10200710	10200710	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:10200710C>T	uc002mmu.3	+	5	669	c.371C>T	c.(370-372)CCC>CTC	p.P124L	C19orf66_uc002mmv.3_Missense_Mutation_p.P124L|C19orf66_uc002mmw.3_Missense_Mutation_p.P73L	NM_018381	NP_060851	Q9NUL5	CS066_HUMAN	hypothetical protein LOC55337	124											0						CGCCGCGTGCCCCAGCGGAAG	0.572000													4	6					0	0	0.009096	0	0
NXNL1	115861	broad.mit.edu	37	19	17571529	17571529	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:17571529G>A	uc002ngs.2	-	1	197	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	50	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						GGATGGGCACGAAGGCCTGGC	0.617000													22	63					0	0	0.016522	0	0
SUPT5H	6829	broad.mit.edu	37	19	39963882	39963882	+	Silent	SNP	G	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:39963882G>C	uc002olo.3	+	24	2477	c.2298G>C	c.(2296-2298)GGG>GGC	p.G766G	SUPT5H_uc002olp.3_Silent_p.G766G|SUPT5H_uc002olq.3_Silent_p.G762G|SUPT5H_uc002oln.3_Silent_p.G766G|SUPT5H_uc002olr.3_Silent_p.G766G|SUPT5H_uc002ols.1_Silent_p.G389G|SUPT5H_uc010egp.1_Missense_Mutation_p.E132Q	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	766	CTR1-3.|9 X 7 AA approximate tandem repeats of G- S-[QR]-T-P-X-[YQ], motif CTR1.				cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CGACCTATGGGAGGACGCCCA	0.652000													17	34					0	0	0.006122	0	0
ZNF229	7772	broad.mit.edu	37	19	44934304	44934304	+	Missense_Mutation	SNP	C	T	T	rs146515421	by1000genomes	TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:44934304C>T	uc002oze.1	-	6	1086	c.652G>A	c.(652-654)GAT>AAT	p.D218N	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.D212N	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	218					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CTGTCATCATCCCAGTTACAT	0.393000													14	74					0	0	0.016723	0	0
CARD8	22900	broad.mit.edu	37	19	48715042	48715042	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:48715042G>A	uc002pie.3	-	10	1534	c.1221C>T	c.(1219-1221)GCC>GCT	p.A407A	CARD8_uc002pii.3_3'UTR|CARD8_uc002pid.1_Intron|CARD8_uc010xzi.1_Intron|CARD8_uc010els.2_3'UTR|CARD8_uc010xzj.1_Silent_p.A513A|CARD8_uc010xzk.1_Silent_p.A432A|CARD8_uc002pif.3_3'UTR|CARD8_uc002pig.3_Silent_p.A238A|CARD8_uc002pih.3_Silent_p.A463A|CARD8_uc010xzl.1_Silent_p.A463A|CARD8_uc010xzm.1_3'UTR	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	407	CARD.				negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		GCACGTCCAGGGCCAGGTCCC	0.488000													35	180					0	0	0.023175	0	0
LMTK3	114783	broad.mit.edu	37	19	49012169	49012169	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:49012169G>A	uc002pjk.2	-	6	583	c.583C>T	c.(583-585)CTC>TTC	p.L195F		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		CTGGCTCGGAGCTCCTTCACC	0.617000													17	66					0	0	0.007413	0	0
TEAD2	8463	broad.mit.edu	37	19	49852044	49852044	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:49852044G>A	uc002pnj.2	-	8	742	c.651C>T	c.(649-651)GCC>GCT	p.A217A	TEAD2_uc002png.2_Silent_p.A220A|TEAD2_uc002pnh.2_Silent_p.A221A|TEAD2_uc002pni.2_Silent_p.A220A|TEAD2_uc010yao.1_Silent_p.A89A|TEAD2_uc010emw.2_Silent_p.A220A	NM_003598	NP_003589	Q15562	TEAD2_HUMAN	TEA domain family member 2	217	Transcriptional activation (Potential).				hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3		all_lung(116;7.65e-05)|Lung NSC(112;0.000132)|all_neural(266;0.0506)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00093)|GBM - Glioblastoma multiforme(486;0.0467)		GAGCCTGCCAGGCTGGGGGCG	0.577000													7	39					0	0	0.001984	0	0
SHANK1	50944	broad.mit.edu	37	19	51219543	51219543	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:51219543G>A	uc002psx.1	-	2	467	c.448C>T	c.(448-450)CCC>TCC	p.P150S		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	150					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TCCAGGTAGGGGACCCCCTTC	0.582000													16	89					0	0	0.004990	0	0
MIR518D	574489	broad.mit.edu	37	19	54238155	54238155	+	RNA	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:54238155G>A	hsa-mir-518d|MI0003171	+			c.25G>A			MIR516B1_hsa-mir-516b-1|MI0003172_5'Flank																	0						CCTCTAGAGGGAAGCACTTTC	0.418000													12	57					0	0	0.016723	0	0
NLRP13	126204	broad.mit.edu	37	19	56424151	56424151	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:56424151G>A	uc010ygg.1	-	5	1057	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	344	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AGCTGTGTAGGATTTTGGTCA	0.463000													17	79					0	0	0.028581	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58549328	58549328	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr19:58549328C>T	uc002qrc.1	+	3	371	c.124C>T	c.(124-126)CGG>TGG	p.R42W	ZSCAN1_uc002qra.1_Missense_Mutation_p.R42W|ZSCAN1_uc002qrb.1_Missense_Mutation_p.R42W	NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	42	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		TCTGCGCTTCCGGCAGTTCCA	0.721000													4	21					0	0	0.009096	0	0
APOB	338	broad.mit.edu	37	2	21231015	21231015	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:21231015C>T	uc002red.2	-	26	8853	c.8725G>A	c.(8725-8727)GAG>AAG	p.E2909K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2909					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTCTTGATCTCGTTGCGCAGG	0.468000													136	378					0	0	0.014410	0	0
LRRTM4	80059	broad.mit.edu	37	2	77745764	77745764	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:77745764G>A	uc002snr.2	-	3	1646	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S	LRRTM4_uc002snq.2_Missense_Mutation_p.P411S|LRRTM4_uc002sns.2_Missense_Mutation_p.P411S|LRRTM4_uc002snt.2_Missense_Mutation_p.P412S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	411	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TCTGCGCCAGGAATCTGAAAC	0.483000													16	50					0	0	0.006122	0	0
LRP1B	53353	broad.mit.edu	37	2	141643882	141643882	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:141643882G>A	uc002tvj.1	-	24	4761	c.3789C>T	c.(3787-3789)ATC>ATT	p.I1263I	LRP1B_uc010fnl.1_Silent_p.I445I	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1263	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAATAGAAAAGATGATGAATG	0.303000										TSP Lung(27;0.18)			4	27					0	0	0.014758	0	0
XIRP2	129446	broad.mit.edu	37	2	168103971	168103971	+	Silent	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:168103971A>G	uc002udx.2	+	8	6087	c.6069A>G	c.(6067-6069)AAA>AAG	p.K2023K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K1848K|XIRP2_uc010fpq.2_Silent_p.K1801K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1848					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGCCCCCAAAGGCACTGTAA	0.403000													13	42					0	0	0.020292	0	0
TTN	7273	broad.mit.edu	37	2	179604270	179604270	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:179604270C>T	uc010zfh.1	-	46	13401	c.13177G>A	c.(13177-13179)GAA>AAA	p.E4393K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4326K|TTN_uc010zfj.1_Missense_Mutation_p.E4201K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTTGTTTTTCGTCAGAGACA	0.428000													6	54					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179610473	179610473	+	Nonsense_Mutation	SNP	T	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:179610473T>A	uc002unb.2	-	46	16878	c.16654A>T	c.(16654-16656)AAA>TAA	p.K5552*	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9022							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGACTAATTTTCCATCTTTG	0.418000													15	70					0	0	0.024245	0	0
KCTD18	130535	broad.mit.edu	37	2	201369606	201369606	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:201369606G>A	uc002uvs.2	-	3	754	c.237C>T	c.(235-237)CCC>CCT	p.P79P	KCTD18_uc002uvt.2_Silent_p.P79P|KCTD18_uc002uvu.1_Silent_p.P79P	NM_152387	NP_689600	Q6PI47	KCD18_HUMAN	potassium channel tetramerization domain	79	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1						GCTCATCTGTGGGAATCTGAA	0.433000													9	30					0	0	0.004482	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882578	228882578	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:228882578G>A	uc002vpq.2	-	7	3039	c.2992C>T	c.(2992-2994)CCC>TCC	p.P998S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P998S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P998S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	998						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CTGAGCCGGGGAGGCTTGTGT	0.532000													13	54					0	0	0.024245	0	0
DGKD	8527	broad.mit.edu	37	2	234343527	234343527	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr2:234343527C>T	uc002vui.1	+	5	578	c.566C>T	c.(565-567)TCG>TTG	p.S189L	DGKD_uc002vuj.1_Missense_Mutation_p.S145L|DGKD_uc010fyh.1_Missense_Mutation_p.S56L|DGKD_uc002vuk.1_Missense_Mutation_p.S56L	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	189	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	GGGGTCACGTCGCACGGGCTG	0.552000													11	109					0	0	0.028581	0	0
FRG1B	284802	broad.mit.edu	37	20	29625892	29625892	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr20:29625892T>C	uc010ztl.1	+	2	78	c.46T>C	c.(46-48)TAT>CAT	p.Y16H	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAATCTGGCTATGGAAAATA	0.348000													5	73					0	0	0.021553	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333000													4	61					0	0	0.001984	0	0
PTPRT	11122	broad.mit.edu	37	20	41306677	41306677	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr20:41306677G>A	uc002xkg.2	-	7	1166	c.982C>T	c.(982-984)CGC>TGC	p.R328C	PTPRT_uc010ggj.2_Missense_Mutation_p.R328C	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	328	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTGGTGGTGCGATATTCCACT	0.562000													48	64					0	0	0.014410	0	0
C20orf43	51507	broad.mit.edu	37	20	55052148	55052148	+	Silent	SNP	C	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr20:55052148C>G	uc002xxt.2	+	4	473	c.366C>G	c.(364-366)CCC>CCG	p.P122P	C20orf43_uc010zzf.1_Silent_p.P152P|C20orf43_uc002xxu.2_Silent_p.P122P|C20orf43_uc002xxv.2_Silent_p.P122P	NM_016407	NP_057491	Q9BY42	CT043_HUMAN	hypothetical protein LOC51507	122										ovary(1)	1			Colorectal(105;0.202)			TCATCTGCCCCGTTGTGGGCC	0.562000													9	35					0	0	0.004482	0	0
DSCR10	259234	broad.mit.edu	37	21	39580553	39580553	+	RNA	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr21:39580553G>A	uc010gnt.1	+	3		c.675G>A				NR_027695				Homo sapiens DSCR10 mRNA, complete cds.												0						GTTTGCCATCGAAGGAAAACC	0.403000													57	194					0	0	0.014410	0	0
KRTAP10-4	386672	broad.mit.edu	37	21	45993886	45993886	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr21:45993886C>T	uc002zfk.1	+	1	281	c.251C>T	c.(250-252)TCC>TTC	p.S84F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198687	NP_941960	P60372	KR104_HUMAN	keratin associated protein 10-4	84	36 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGCACCAGCTCCTGCACGCCC	0.687000													9	40					0	0	0.013537	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663087	+	RNA	DNP	TA	GG	GG	rs1054157	by1000genomes	TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr22:22663086_22663087TA>GG	uc011aim.1	+	29		c.1859_1860TA>GG			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCTT	0.302000													5	39					0	0	0.004672	0	0
LOC91316	91316	broad.mit.edu	37	22	24056458	24056458	+	RNA	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr22:24056458A>G	uc011aiz.1	-	3		c.651T>C			LOC91316_uc010gub.1_RNA	NR_024448				Homo sapiens cDNA FLJ32313 fis, clone PROST2003232, weakly similar to BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).												0						GTATAGAAGCAGAGACCACAG	0.552000													3	9					0	0	0.009096	0	0
ITPR1	3708	broad.mit.edu	37	3	4825540	4825540	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr3:4825540C>A	uc003bqa.2	+	48	6755	c.6407C>A	c.(6406-6408)CCT>CAT	p.P2136H	ITPR1_uc010hca.1_Missense_Mutation_p.P2121H|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.P1106H	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2184	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ATGCTGAAACCTGGTGGCCAA	0.493000													4	6					1.23904e-05	4.03941e-05	0.014758	1	0
GRIP2	80852	broad.mit.edu	37	3	14549195	14549195	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr3:14549195G>A	uc011avi.1	-	19	2386	c.2386C>T	c.(2386-2388)CAC>TAC	p.H796Y	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Missense_Mutation_p.H327Y	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	698	PDZ 6.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						TCCCCCACGTGGATGGCACCA	0.627000													6	36					0	0	0.001984	0	0
STAG1	10274	broad.mit.edu	37	3	136342005	136342005	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr3:136342005G>A	uc003era.1	-	3	407	c.115C>T	c.(115-117)CGT>TGT	p.R39C	STAG1_uc003erb.1_Missense_Mutation_p.R39C|STAG1_uc003erc.1_5'UTR|STAG1_uc010hua.1_5'UTR|STAG1_uc003ere.2_Missense_Mutation_p.R39C	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	39					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						CGGCCAGGACGACCCCTTTTT	0.403000													44	134					0	0	0.014410	0	0
COPB2	9276	broad.mit.edu	37	3	139087108	139087108	+	Missense_Mutation	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr3:139087108T>C	uc003etf.3	-	13	1554	c.1424A>G	c.(1423-1425)GAG>GGG	p.E475G	COPB2_uc011bmv.1_Missense_Mutation_p.E446G|COPB2_uc010hui.2_Missense_Mutation_p.E446G	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	475					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						ACAGACTAGCTCTCCAGAGTC	0.383000													15	28					0	0	0.028581	0	0
NAALADL2	254827	broad.mit.edu	37	3	174974201	174974201	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr3:174974201C>T	uc003fit.2	+	4	908	c.821C>T	c.(820-822)GCT>GTT	p.A274V	NAALADL2_uc003fiu.1_Missense_Mutation_p.A267V|NAALADL2_uc010hwy.1_Missense_Mutation_p.A96V|NAALADL2_uc010hwz.1_5'UTR	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	274	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CTCTTTCAGGCTGAAGTCATC	0.313000													23	44					0	0	0.016522	0	0
ZNF518B	85460	broad.mit.edu	37	4	10447404	10447404	+	Silent	SNP	T	C	C			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:10447404T>C	uc003gmn.2	-	3	1036	c.549A>G	c.(547-549)AAA>AAG	p.K183K		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	183	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TGCCTGTGTGTTTCACCAAAT	0.388000													37	83					0	0	0.021022	0	0
CWH43	80157	broad.mit.edu	37	4	49030703	49030703	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:49030703G>A	uc003gyv.2	+	10	1506	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K	CWH43_uc011bzl.1_Missense_Mutation_p.E415K	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	442					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						ATATGACAATGAAGGGTGGTC	0.413000													18	42					0	0	0.016522	0	0
GC	2638	broad.mit.edu	37	4	72620790	72620790	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:72620790G>A	uc003hge.2	-	9	1222	c.1069C>T	c.(1069-1071)CCG>TCG	p.P357S	GC_uc003hgd.2_Missense_Mutation_p.P235S|GC_uc010iie.2_Missense_Mutation_p.P357S|GC_uc010iif.2_Missense_Mutation_p.P376S	NM_000583	NP_000574	P02774	VTDB_HUMAN	vitamin D-binding protein precursor	357	Albumin 2.				hormone biosynthetic process|vitamin D metabolic process	cytosol|lysosomal lumen	actin binding|vitamin D binding|vitamin transporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		all_hematologic(202;0.107)	Lung(101;0.148)		Cholecalciferol(DB00169)	AATACTTCCGGAAGATGAGTC	0.343000													21	28					0	0	0.021523	0	0
CCDC158	339965	broad.mit.edu	37	4	77272262	77272262	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:77272262G>A	uc003hkb.3	-	17	2704	c.2551C>T	c.(2551-2553)CCT>TCT	p.P851S		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	851										skin(3)|ovary(2)|pancreas(1)	6						GTGTATCCAGGGCCCTGAAGT	0.393000													51	101					0	0	0.014410	0	0
NDST3	9348	broad.mit.edu	37	4	118975649	118975649	+	Missense_Mutation	SNP	T	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:118975649T>A	uc003ibx.2	+	2	987	c.584T>A	c.(583-585)ATT>AAT	p.I195N	NDST3_uc011cgf.1_Missense_Mutation_p.I195N|NDST3_uc003ibw.2_Missense_Mutation_p.I195N	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	195	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						GATTGTTGTATTAATCCTCAT	0.353000													37	67					0	0	0.008740	0	0
LRBA	987	broad.mit.edu	37	4	151773905	151773905	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr4:151773905G>A	uc010ipj.2	-	23	3431	c.2957C>T	c.(2956-2958)ACC>ATC	p.T986I	LRBA_uc003ilu.3_Missense_Mutation_p.T986I	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	986						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					ACCATTTGTGGTGAAATGAGG	0.373000													23	38					0	0	0.014323	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1339007	1339007	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:1339007G>A	uc003jch.2	-	4	613	c.567C>T	c.(565-567)TCC>TCT	p.S189S	CLPTM1L_uc003jcg.2_Silent_p.S56S	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	189	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		CGGCAGGCAGGGAGGACCCGT	0.647000													9	47					0	0	0.008291	0	0
DNAH5	1767	broad.mit.edu	37	5	13719075	13719075	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:13719075G>A	uc003jfd.2	-	72	12457	c.12415C>T	c.(12415-12417)CCC>TCC	p.P4139S	DNAH5_uc003jfc.2_Missense_Mutation_p.P307S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4139	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTGTAATGGGAAACTGCTTA	0.453000									Kartagener_syndrome				30	78					0	0	0.009535	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751639	140751639	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:140751639C>T	uc003ljw.1	+	1	1678	c.1678C>T	c.(1678-1680)CCG>TCG	p.P560S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.P560S|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	560	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGACAATGCACCGCTGGTGCT	0.662000													4	29					0	0	0.009096	0	0
FAT2	2196	broad.mit.edu	37	5	150885593	150885593	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:150885593G>A	uc003lue.3	-	23	12596	c.12583C>T	c.(12583-12585)CAC>TAC	p.H4195Y	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.H802Y	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4195	Cytoplasmic (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACTTCGGAGTGGGGGTATTCC	0.602000													40	121					0	0	0.008740	0	0
GLRA1	2741	broad.mit.edu	37	5	151239414	151239414	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:151239414G>A	uc003lut.2	-	4	695	c.408C>T	c.(406-408)TTC>TTT	p.F136F	GLRA1_uc003lur.2_Silent_p.F136F|GLRA1_uc003lus.2_Silent_p.F53F	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	136	Extracellular (Probable).				muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGATCTCATGGAAGTGGGCCC	0.522000													10	71					0	0	0.006214	0	0
DRD1	1812	broad.mit.edu	37	5	174868977	174868977	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr5:174868977C>T	uc003mcz.2	-	2	2071	c.1126G>A	c.(1126-1128)GAG>AAG	p.E376K		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	376	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	CCTCGTGGCTCATGATGGCTG	0.522000													29	93					0	0	0.008361	0	0
MYLK4	340156	broad.mit.edu	37	6	2685552	2685552	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:2685552C>T	uc003mty.3	-	6	820	c.523G>A	c.(523-525)GAC>AAC	p.D175N		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	175	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				AGGACAATGTCGTTCTTAGAC	0.577000													28	103					0	0	0.013726	0	0
NEDD9	4739	broad.mit.edu	37	6	11213611	11213611	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:11213611G>A	uc003mzv.2	-	2	529	c.362C>T	c.(361-363)CCC>CTC	p.P121L	NEDD9_uc010joz.2_Missense_Mutation_p.P121L|NEDD9_uc003mzw.3_5'UTR|NEDD9_uc003mzx.2_Missense_Mutation_p.P121L	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	121	Interacts strongly with spindle- regulatory protein D1M1.				actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			GTGGCCAGTGGGGACTTGGTA	0.542000													31	88					0	0	0.008361	0	0
PKHD1	5314	broad.mit.edu	37	6	51913356	51913356	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:51913356G>A	uc003pah.1	-	23	2617	c.2341C>T	c.(2341-2343)CGA>TGA	p.R781*	PKHD1_uc003pai.2_Nonsense_Mutation_p.R781*	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	781	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GTCCGCTGTCGTCTCTGTGTC	0.507000													13	84					0	0	0.013537	0	0
MED23	9439	broad.mit.edu	37	6	131927636	131927636	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:131927636G>A	uc003qcs.1	-	13	1524	c.1350C>T	c.(1348-1350)TCC>TCT	p.S450S	MED23_uc003qcq.2_Silent_p.S456S|MED23_uc011eca.1_Silent_p.S91S|MED23_uc003qct.1_Silent_p.S456S|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	450					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GAAGTCTTAGGGAATGAGGTA	0.368000													8	38					0	0	0.006214	0	0
SERAC1	84947	broad.mit.edu	37	6	158532443	158532443	+	Silent	SNP	A	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:158532443A>T	uc003qrc.2	-	17	2062	c.1920T>A	c.(1918-1920)ACT>ACA	p.T640T	SERAC1_uc003qrb.2_Silent_p.T368T	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	640					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		TGAATTGTAAAGTACGCTGGT	0.363000													6	47					0	0	0.021553	0	0
SLC22A1	6580	broad.mit.edu	37	6	160564612	160564612	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:160564612G>A	uc003qtc.2	+	8	1421	c.1316G>A	c.(1315-1317)CGA>CAA	p.R439Q	SLC22A1_uc003qtd.2_Missense_Mutation_p.R439Q	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	439	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		TGTGTTGGCCGAATGGGAATC	0.498000													12	36					0	0	0.013537	0	0
RBAK	57786	broad.mit.edu	37	7	5103551	5103551	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:5103551G>A	uc010kss.1	+	6	788	c.464G>A	c.(463-465)GGA>GAA	p.G155E	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.G155E	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	155					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		AGTAGTGATGGAAGCTATGCT	0.343000													17	42					0	0	0.004990	0	0
NPSR1	387129	broad.mit.edu	37	7	34724261	34724261	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:34724261G>A	uc003teg.1	+	2	373	c.245G>A	c.(244-246)AGA>AAA	p.R82K	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.R82K|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.R82K|NPSR1_uc003tei.1_Missense_Mutation_p.R82K|NPSR1_uc010kww.1_Missense_Mutation_p.R82K|NPSR1_uc011kar.1_Missense_Mutation_p.R82K	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	82	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AAGAAGTCAAGAATGACCTTC	0.433000													12	61					0	0	0.010729	0	0
PCLO	27445	broad.mit.edu	37	7	82585745	82585745	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:82585745C>T	uc003uhx.2	-	5	4813	c.4524G>A	c.(4522-4524)GAG>GAA	p.E1508E	PCLO_uc003uhv.2_Silent_p.E1508E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1439					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATCATAAGGCTCTCTTCTAG	0.378000													10	55					0	0	0.008291	0	0
GRM3	2913	broad.mit.edu	37	7	86416374	86416374	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:86416374G>A	uc003uid.2	+	3	2365	c.1266G>A	c.(1264-1266)ATG>ATA	p.M422I	GRM3_uc010lef.2_Missense_Mutation_p.M420I|GRM3_uc010leg.2_Missense_Mutation_p.M294I|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	422	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GTGATGCTATGAAGATCCTGG	0.463000													59	130					0	0	0.014410	0	0
ABCB1	5243	broad.mit.edu	37	7	87178664	87178664	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:87178664C>T	uc003uiz.1	-	15	2143	c.1725G>A	c.(1723-1725)AAG>AAA	p.K575K	ABCB1_uc011khc.1_Silent_p.K511K	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	575	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTCACTGACCTTATCCAGAG	0.448000													13	28					0	0	0.013537	0	0
PEX1	5189	broad.mit.edu	37	7	92132403	92132403	+	Missense_Mutation	SNP	T	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:92132403T>G	uc003uly.2	-	13	2274	c.2178A>C	c.(2176-2178)CAA>CAC	p.Q726H	PEX1_uc011khr.1_Missense_Mutation_p.Q518H|PEX1_uc010ley.2_Missense_Mutation_p.Q669H|PEX1_uc011khs.1_Missense_Mutation_p.Q404H|PEX1_uc011kht.1_RNA	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	726					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			TGTGAACTCCTTGAGCAGAAA	0.368000													14	30					0	0	0.020292	0	0
CPSF4	10898	broad.mit.edu	37	7	99042437	99042437	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:99042437C>T	uc003uqj.2	+	2	272	c.129C>T	c.(127-129)TTC>TTT	p.F43F	PTCD1_uc011kiw.1_Intron|CPSF4_uc003uqi.2_Silent_p.F43F|CPSF4_uc003uqk.2_Silent_p.F43F|CPSF4_uc011kix.1_5'UTR	NM_006693	NP_006684	O95639	CPSF4_HUMAN	cleavage and polyadenylation specific factor 4,	43	C3H1-type 1.				modification by virus of host mRNA processing|mRNA processing|viral infectious cycle	mRNA cleavage and polyadenylation specificity factor complex	RNA binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TCTGTGAATTCTTTTTGAAAG	0.542000													43	231					0	0	0.014410	0	0
MET	4233	broad.mit.edu	37	7	116380061	116380061	+	Missense_Mutation	SNP	C	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:116380061C>A	uc003vij.2	+	4	1637	c.1450C>A	c.(1450-1452)CAT>AAT	p.H484N	MET_uc010lkh.2_Missense_Mutation_p.H484N|MET_uc011knc.1_Missense_Mutation_p.H484N|MET_uc011knd.1_Missense_Mutation_p.H484N|MET_uc011kne.1_Missense_Mutation_p.H484N|MET_uc011knf.1_Missense_Mutation_p.H484N|MET_uc011kng.1_Missense_Mutation_p.H484N|MET_uc011knh.1_Missense_Mutation_p.H484N|MET_uc011kni.1_Missense_Mutation_p.H484N|MET_uc011knj.1_Missense_Mutation_p.H54N|MET_uc011kna.1_Missense_Mutation_p.H484N|MET_uc011knb.1_Missense_Mutation_p.H484N	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	484	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CCTGGACTCCCATCCAGTGTC	0.433000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				7	144					0.00198382	0.00643031	0.001984	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	51					0	0	0.013726	0	0
OR2A2	442361	broad.mit.edu	37	7	143807135	143807135	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:143807135C>T	uc011ktz.1	+	1	460	c.460C>T	c.(460-462)CTG>TTG	p.L154L		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					TGGGTTTGCCCTGTCCCTGGT	0.532000													34	71					0	0	0.013726	0	0
SSPO	23145	broad.mit.edu	37	7	149509388	149509388	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr7:149509388C>T	uc010lpk.2	+	70	9786	c.9786C>T	c.(9784-9786)TCC>TCT	p.S3262S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3262	TSP type-1 12.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCCCTGGTCCCACTGTAGCC	0.716000													6	19					0	0	0.004482	0	0
EPB49	2039	broad.mit.edu	37	8	21926979	21926979	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:21926979C>T	uc011kyt.1	+	6	573	c.344C>T	c.(343-345)CCC>CTC	p.P115L	EPB49_uc010ltl.2_Missense_Mutation_p.P115L|EPB49_uc011kys.1_Missense_Mutation_p.P75L|EPB49_uc010ltn.2_Missense_Mutation_p.P90L|EPB49_uc011kyu.1_Missense_Mutation_p.P115L|EPB49_uc011kyv.1_Missense_Mutation_p.P115L|EPB49_uc010ltq.2_Missense_Mutation_p.P115L	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	115					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		GCCTCGGCCCCCAGAACCACT	0.627000													8	42					0	0	0.008291	0	0
EXTL3	2137	broad.mit.edu	37	8	28574362	28574362	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:28574362C>T	uc003xgz.1	+	3	1379	c.786C>T	c.(784-786)TCC>TCT	p.S262S		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	262	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		AGTTGTATTCCCTGCCACACT	0.527000													6	53					0	0	0.021553	0	0
AGPAT6	137964	broad.mit.edu	37	8	41467308	41467308	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:41467308G>T	uc003xnz.2	+	4	1309	c.370G>T	c.(370-372)GAG>TAG	p.E124*		NM_178819	NP_848934	Q86UL3	GPAT4_HUMAN	lysophosphatidic acid acyltransferase zeta	124					acyl-CoA metabolic process|lactation|phosphatidylcholine biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	glycerol-3-phosphate O-acyltransferase activity				0	Ovarian(28;0.00769)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.0131)|Lung NSC(58;0.0363)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	OV - Ovarian serous cystadenocarcinoma(14;0.00126)|Colorectal(10;0.0014)|Lung(22;0.00177)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0147)			GAAAGGAATGGAGACCATTAT	0.448000													23	93					1.85244e-09	6.10981e-09	0.018920	1	0
CPNE3	8895	broad.mit.edu	37	8	87560537	87560537	+	Silent	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:87560537G>A	uc003ydv.2	+	12	1050	c.888G>A	c.(886-888)GTG>GTA	p.V296V	CPNE3_uc003ydw.1_Silent_p.V12V	NM_003909	NP_003900	O75131	CPNE3_HUMAN	copine III	296	VWFA.				lipid metabolic process|vesicle-mediated transport	cytosol	calcium-dependent phospholipid binding|protein serine/threonine kinase activity|transporter activity			ovary(1)|skin(1)	2						AGGTGGGAGTGGACTTCACTG	0.493000													9	41					0	0	0.010729	0	0
FAM92A1	137392	broad.mit.edu	37	8	94722022	94722022	+	Silent	SNP	T	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:94722022T>A	uc010maq.2	+	5	565	c.462T>A	c.(460-462)GCT>GCA	p.A154A	FAM92A1_uc003yfv.3_RNA|FAM92A1_uc003yfx.3_RNA|FAM92A1_uc003yfw.3_RNA|FAM92A1_uc010mar.2_5'UTR	NM_145269	NP_660312	A1XBS5	F92A1_HUMAN	hypothetical protein LOC137392	154	Potential.										0	Breast(36;2.4e-06)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			TACAGAGAGCTGCAATGGATG	0.358000													6	25					0	0	0.021553	0	0
DCAF13	25879	broad.mit.edu	37	8	104427664	104427664	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:104427664G>A	uc003yln.2	+	1	723	c.446G>A	c.(445-447)AGA>AAA	p.R149K	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						CCGGCCGGAAGAGCAACCGAG	0.562000													15	34					0	0	0.024245	0	0
KIAA0196	9897	broad.mit.edu	37	8	126085418	126085418	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:126085418A>G	uc003yrt.2	-	9	1456	c.1127T>C	c.(1126-1128)CTG>CCG	p.L376P	KIAA0196_uc011lir.1_Missense_Mutation_p.L228P	NM_014846	NP_055661	Q12768	STRUM_HUMAN	strumpellin	376					cell death	WASH complex				ovary(2)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			ATGAAGCATCAGCCATCGGAT	0.443000													3	76					0	0	0.014758	0	0
COL22A1	169044	broad.mit.edu	37	8	139601587	139601588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr8:139601587_139601588CC>TT	uc003yvd.2	-	65	5236_5237	c.4789_4790GG>AA	c.(4789-4791)GGA>AAA	p.G1597K	COL22A1_uc011ljo.1_Missense_Mutation_p.G877K	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1597	Pro-rich.|Gly-rich.|Collagen-like 16.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			ACCGGGAGGTCCTGGGAGGCCA	0.629000										HNSCC(7;0.00092)			6	35					0	0	0.004672	0	0
GLIS3	169792	broad.mit.edu	37	9	4118392	4118392	+	Silent	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr9:4118392C>T	uc003zhw.1	-	3	815	c.621G>A	c.(619-621)CCG>CCA	p.P207P	GLIS3_uc003zhx.1_Silent_p.P362P|GLIS3_uc003zic.1_Silent_p.P362P|GLIS3_uc003zie.1_Silent_p.P362P|GLIS3_uc010mhh.1_Silent_p.P237P|GLIS3_uc003zid.1_Silent_p.P140P|GLIS3_uc010mhi.1_Silent_p.P169P|GLIS3_uc003zif.1_Silent_p.P140P|GLIS3_uc003zig.1_Silent_p.P206P|GLIS3_uc003zih.1_Silent_p.P140P|GLIS3_uc003zhy.1_Silent_p.P140P|GLIS3_uc003zhz.1_Silent_p.P140P|GLIS3_uc003zib.1_Silent_p.P206P|GLIS3_uc010mhg.1_Silent_p.P140P	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	207					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GCACCGGGCGCGGCTGGGGAA	0.736000													4	8					0	0	0.009096	0	0
GARNL3	84253	broad.mit.edu	37	9	130117744	130117744	+	Missense_Mutation	SNP	A	G	G			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr9:130117744A>G	uc011mae.1	+	20	2329	c.1928A>G	c.(1927-1929)TAC>TGC	p.Y643C	GARNL3_uc011mad.1_Missense_Mutation_p.Y621C|GARNL3_uc010mxi.2_5'UTR	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3	643	CNH.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GAATTCCAGTACATCAGGGTA	0.458000													32	213					0	0	0.009535	0	0
BEND2	139105	broad.mit.edu	37	X	18221737	18221737	+	Missense_Mutation	SNP	C	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chrX:18221737C>T	uc004cyj.3	-	5	945	c.791G>A	c.(790-792)CGA>CAA	p.R264Q	BEND2_uc010nfb.2_Missense_Mutation_p.R264Q	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	264								p.R264*(1)		ovary(3)|kidney(1)|central_nervous_system(1)	5						GGATTCTCTTCGTGACAGAAC	0.463000													19	57					0	0	0.006122	0	0
OR13H1	347468	broad.mit.edu	37	X	130678175	130678175	+	Missense_Mutation	SNP	G	A	A			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chrX:130678175G>A	uc011muw.1	+	1	128	c.128G>A	c.(127-129)GGA>GAA	p.G43E	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					TTGGGGAATGGATTTATGATC	0.383000													38	77					0	0	0.023175	0	0
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	Splice_Site	INS	-	C	C	rs17857448		TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr12:7080212_7080213insC	uc001qsh.3	+	2	272	c.129_splice	c.e2+1	p.L43_splice	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						GAGGCCGTAGTTTATTGTGGTG	0.569													6	12	---	---	---	---					
C14orf106	55320	broad.mit.edu	37	14	45716018	45716019	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr14:45716018_45716019insT	uc001wwf.2	-	2	930_931	c.471_472insA	c.(469-474)AAATTGfs	p.K157fs	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	157_158					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						GTATGCTGCAATTTTTTTTTTT	0.356													9	112	---	---	---	---					
C15orf21	283651	broad.mit.edu	37	15	45848231	45848231	+	RNA	DEL	T	-	-			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr15:45848231delT	uc010beg.1	+	6		c.1226delT			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TTTGTTTAGCTTTTTTTTTTT	0.323			T	ETV1	prostate								4	9	---	---	---	---					
HDGFL1	154150	broad.mit.edu	37	6	22570346	22570347	+	In_Frame_Ins	INS	-	GGC	GGC			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:22570346_22570347insGGC	uc003nds.2	+	1	669_670	c.542_543insGGC	c.(541-543)AGG>AGGGCG	p.188_189insA		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	188_189	Ala-rich.|Glu-rich.										0	Ovarian(93;0.163)					gaagcggagagggcggcggcgg	0.510													2	4	---	---	---	---					
HSP90AB1	3326	broad.mit.edu	37	6	44220932	44220932	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HR-A2OH-01A-11D-A197-08	TCGA-HR-A2OH-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	30724ea1-392c-409c-8704-36d9486219ed	6286dcdd-3161-4be2-a24b-5f4c3d4fb6b8	g.chr6:44220932delA	uc003oxa.1	+	11	1966	c.1882delA	c.(1882-1884)ATCfs	p.I628fs	HSP90AB1_uc011dvr.1_Frame_Shift_Del_p.I618fs|HSP90AB1_uc003oxb.1_Frame_Shift_Del_p.I628fs|HSP90AB1_uc011dvs.1_Frame_Shift_Del_p.I448fs|HSP90AB1_uc003oxc.1_Frame_Shift_Del_p.I266fs	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	628					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GCACCTGGAGATCAACCCTGA	0.547													17	127	---	---	---	---					
