Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
annotationfile	SKCM.2013_07_07__00_00_09.antibody_annotation.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:11	RPPA_AnnotateWithGene_2013080900	SKCM.rppa.txt	RPPA_Level3_mapped	Level_3	txt	gdac.broadinstitute.org_SKCM.RPPA_AnnotateWithGene.Level_3.2013080900.0.0	yes
annotationfile	SKCM.2013_07_07__00_00_09.antibody_annotation.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:11	RPPA_AnnotateWithGene_2013080900	SKCM.rppa.png	PNG	Level_3	png	gdac.broadinstitute.org_SKCM.RPPA_AnnotateWithGene.Level_3.2013080900.0.0	yes
Rppafile	SKCM.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.Level_3.2013080900.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:11	RPPA_AnnotateWithGene_2013080900	SKCM.rppa.txt	RPPA_Level3_mapped	Level_3	txt	gdac.broadinstitute.org_SKCM.RPPA_AnnotateWithGene.Level_3.2013080900.0.0	yes
Rppafile	SKCM.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.Level_3.2013080900.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:11	RPPA_AnnotateWithGene_2013080900	SKCM.rppa.png	PNG	Level_3	png	gdac.broadinstitute.org_SKCM.RPPA_AnnotateWithGene.Level_3.2013080900.0.0	yes
