Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
PLCH2	9651	broad.mit.edu	37	1	2430597	2430597	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:2430597G>A	uc001aji.1	+	19	2783	c.2509G>A	c.(2509-2511)GTC>ATC	p.V837I	PLCH2_uc010nyz.1_Missense_Mutation_p.V625I|PLCH2_uc009vle.1_Missense_Mutation_p.V589I|PLCH2_uc001ajj.1_Missense_Mutation_p.V625I|PLCH2_uc001ajk.1_Missense_Mutation_p.V625I|PLCH2_uc001ajl.1_5'UTR	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	837	C2.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		CCGCTTCCTCGTCTGGGACCA	0.647													3	30					0	0	1	0	0	
PRDM16	63976	broad.mit.edu	37	1	3102980	3102980	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:3102980T>C	uc001akf.2	+	2	409	c.329T>C	c.(328-330)CTG>CCG	p.L110P	PRDM16_uc001akc.2_Missense_Mutation_p.L110P|PRDM16_uc001akd.2_Missense_Mutation_p.L110P|PRDM16_uc001ake.2_Missense_Mutation_p.L110P|PRDM16_uc009vlh.2_5'UTR	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	110	SET.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GGGGAGAGGCTGGGCCCCTGC	0.637			T	EVI1	MDS|AML								18	31					0	0	1	0	0	
DFFB	1677	broad.mit.edu	37	1	3800085	3800085	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:3800085G>A	uc001alc.2	+	7	1120	c.797G>A	c.(796-798)CGC>CAC	p.R266H	DFFB_uc001ale.2_RNA|DFFB_uc009vlp.2_RNA|DFFB_uc001alb.2_RNA|DFFB_uc010nzn.1_Missense_Mutation_p.R290H|DFFB_uc009vlq.2_RNA|DFFB_uc009vlr.2_Missense_Mutation_p.R217H|DFFB_uc001ald.2_Missense_Mutation_p.R202H	NM_004402	NP_004393	O76075	DFFB_HUMAN	DNA fragmentation factor, 40 kD, beta	266					apoptotic chromosome condensation|DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction	cytosol|nucleoplasm	deoxyribonuclease activity|enzyme binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;2.05e-30)|all_epithelial(116;6.22e-21)|all_lung(118;2.65e-08)|Lung NSC(185;6.25e-06)|Breast(487;0.000659)|Renal(390;0.00121)|all_neural(13;0.0019)|Hepatocellular(190;0.00705)|Colorectal(325;0.0113)|all_hematologic(16;0.0194)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0548)|Medulloblastoma(700;0.211)		Epithelial(90;1.18e-39)|OV - Ovarian serous cystadenocarcinoma(86;7.28e-23)|GBM - Glioblastoma multiforme(42;2.95e-17)|Colorectal(212;1.23e-05)|COAD - Colon adenocarcinoma(227;5.94e-05)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00038)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		GAAAAGAAACGCACCATCATT	0.433													5	45					0	0	1	0	0	
CHD5	26038	broad.mit.edu	37	1	6188970	6188970	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:6188970A>G	uc001amb.1	-	23	3647	c.3547T>C	c.(3547-3549)TCC>CCC	p.S1183P	CHD5_uc001alz.1_Missense_Mutation_p.S40P|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1183	Helicase C-terminal.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TTGGTCATGGACCCCGACTTG	0.657													13	43					0	0	1	0	0	
ESPN	83715	broad.mit.edu	37	1	6520165	6520165	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:6520165C>T	uc001amy.2	+	13	2692	c.2524C>T	c.(2524-2526)CGA>TGA	p.R842*	ESPN_uc001amz.2_Nonsense_Mutation_p.R276*	NM_031475	NP_113663	B1AK53	ESPN_HUMAN	espin	842					sensory perception of sound	brush border|cytoplasm|filamentous actin|stereocilium	actin filament binding|SH3 domain binding				0	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;3.6e-37)|all_epithelial(116;2.56e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|all_hematologic(16;6.92e-06)|Colorectal(325;4.47e-05)|Acute lymphoblastic leukemia(12;4.92e-05)|Breast(487;7.61e-05)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)		Epithelial(90;1.82e-35)|GBM - Glioblastoma multiforme(13;3e-28)|Kidney(185;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(229;5.63e-08)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;1.41e-05)|BRCA - Breast invasive adenocarcinoma(365;0.000109)|STAD - Stomach adenocarcinoma(132;0.00167)|Lung(427;0.0108)|LUSC - Lung squamous cell carcinoma(448;0.0253)|READ - Rectum adenocarcinoma(331;0.0419)		GCCCTGGCAGCGACAGGTCAT	0.657													6	47					0	0	1	0	0	
NOL9	79707	broad.mit.edu	37	1	6589186	6589186	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:6589186C>T	uc001ans.2	-	10	1712	c.1693G>A	c.(1693-1695)GCC>ACC	p.A565T	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	565					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGTAGGGGCGACATCAGAG	0.483													17	38					0	0	1	0	0	
TNFRSF9	3604	broad.mit.edu	37	1	7995165	7995165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:7995165G>A	uc001aot.2	-	6	580	c.452C>T	c.(451-453)ACG>ATG	p.T151M		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	151	Extracellular (Potential).|TNFR-Cys 4.				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		CCTCTCCTTCGTCCCATTCAC	0.493													29	43					0	0	1	0	0	
MTHFR	4524	broad.mit.edu	37	1	11852364	11852364	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:11852364G>A	uc001atc.1	-	10	1787	c.1603C>T	c.(1603-1605)CGG>TGG	p.R535W	MTHFR_uc001atb.1_Missense_Mutation_p.R558W	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	535					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	TAATTAACCCGGAGCTCGTAC	0.468													42	108					0	0	1	0	0	
CLCN6	1185	broad.mit.edu	37	1	11898430	11898430	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:11898430C>T	uc001ate.3	+	21	2447	c.2334C>T	c.(2332-2334)GCC>GCT	p.A778A	CLCN6_uc010oat.1_Silent_p.A494A|CLCN6_uc010oau.1_Silent_p.A756A|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	778	Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCGAGATGGCCGAGGACTACC	0.657											OREG0013104	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	64					0	0	1	0	0	
MFN2	9927	broad.mit.edu	37	1	12052705	12052705	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:12052705A>G	uc001atn.3	+	4	722	c.269A>G	c.(268-270)GAG>GGG	p.E90G	MFN2_uc009vni.2_Missense_Mutation_p.E90G	NM_014874	NP_055689	O95140	MFN2_HUMAN	mitofusin 2	90	Cytoplasmic (Potential).				blood coagulation|mitochondrial fusion|mitochondrial membrane organization|mitochondrion localization|negative regulation of Ras protein signal transduction|negative regulation of smooth muscle cell proliferation|protein targeting to mitochondrion	cytosol|integral to membrane|intrinsic to mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.25e-06)|COAD - Colon adenocarcinoma(227;0.000302)|BRCA - Breast invasive adenocarcinoma(304;0.000329)|Kidney(185;0.000896)|KIRC - Kidney renal clear cell carcinoma(229;0.00274)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		GGCATCAGTGAGGTGCTGGCT	0.537													48	194					0	0	1	0	0	
LOC440563	440563	broad.mit.edu	37	1	13183487	13183487	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:13183487C>T	uc010obg.1	-	1	481	c.386G>A	c.(385-387)CGT>CAT	p.R129H		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	129						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						AGGAGGTACACGTGCTGGGAA	0.512													13	155					0	0	1	0	0	
SPEN	23013	broad.mit.edu	37	1	16260928	16260928	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:16260928A>G	uc001axk.1	+	11	8397	c.8193A>G	c.(8191-8193)GCA>GCG	p.A2731A	SPEN_uc010obp.1_Silent_p.A2690A	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2731	Interaction with RBPSUH (By similarity).				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTGCGAGTGCAGTGAATGCCA	0.597													8	79					0	0	1	0	0	
ATP13A2	23400	broad.mit.edu	37	1	17318354	17318354	+	Splice_Site	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:17318354C>A	uc001baa.2	-	20	2317	c.2127_splice	c.e20-1	p.R709_splice	ATP13A2_uc001azz.1_5'Flank|ATP13A2_uc001bab.2_Splice_Site_p.R704_splice|ATP13A2_uc001bac.2_Splice_Site_p.R704_splice	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1						ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		CACAGTGTCCCTGGAGGGTGG	0.632													9	60					0.000978159	0.00100216	1	1	0	
AKR7L	246181	broad.mit.edu	37	1	19595104	19595104	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:19595104C>T	uc010ocx.1	-	7	796	c.796G>A	c.(796-798)GCC>ACC	p.A266T	AKR7L_uc010ocy.1_Missense_Mutation_p.G200D	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						CGGAGGGCGGCCGAGGTCATG	0.617													5	97					0	0	1	0	0	
HSPG2	3339	broad.mit.edu	37	1	22191813	22191813	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:22191813G>T	uc001bfj.2	-	35	4400	c.4360C>A	c.(4360-4362)CCT>ACT	p.P1454T	HSPG2_uc009vqd.2_Missense_Mutation_p.P1455T	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	1454	Laminin IV type A 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CTCCTCTCAGGGCCCTGCAGC	0.632													5	123					3.59834e-05	3.74717e-05	1	1	0	
EPHA8	2046	broad.mit.edu	37	1	22902838	22902838	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:22902838C>T	uc001bfx.1	+	3	413	c.288C>T	c.(286-288)CGC>CGT	p.R96R	EPHA8_uc001bfw.2_Silent_p.R96R	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	96	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCGCCCGGCGCGTCTATGCTG	0.612													23	47					0	0	1	0	0	
HNRNPR	10236	broad.mit.edu	37	1	23645142	23645142	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:23645142T>C	uc001bgr.3	-	8	1010	c.851A>G	c.(850-852)GAC>GGC	p.D284G	HNRNPR_uc001bgp.3_Missense_Mutation_p.D287G|HNRNPR_uc009vqk.2_Missense_Mutation_p.D186G|HNRNPR_uc001bgs.3_Missense_Mutation_p.D183G|HNRNPR_uc010odw.1_Missense_Mutation_p.D246G|HNRNPR_uc010odx.1_Missense_Mutation_p.D124G|HNRNPR_uc009vql.2_Missense_Mutation_p.D145G	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	284	RRM 2.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		CTTCTTTTTGTCATCGGGTTG	0.458													7	35					0	0	1	0	0	
SYF2	25949	broad.mit.edu	37	1	25549889	25549889	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:25549889A>G	uc001bjt.1	-	7	655	c.600T>C	c.(598-600)CGT>CGC	p.R200R	SYF2_uc001bju.1_Silent_p.R158R	NM_015484	NP_056299	O95926	SYF2_HUMAN	SYF2 homolog, RNA splicing factor isoform 1	200						catalytic step 2 spliceosome					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-26)|Colorectal(126;2.54e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000455)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00145)|GBM - Glioblastoma multiforme(114;0.00443)|READ - Rectum adenocarcinoma(331;0.0936)|Lung(427;0.201)		CATTATAAGGACGTCTCCGGC	0.333													5	117					0	0	1	0	0	
DHDDS	79947	broad.mit.edu	37	1	26759476	26759476	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:26759476C>T	uc001bml.2	+	2	161	c.40C>T	c.(40-42)CGG>TGG	p.R14W	DHDDS_uc001bmk.2_Missense_Mutation_p.R14W|DHDDS_uc001bmm.2_5'UTR|DHDDS_uc001bmn.2_Missense_Mutation_p.R14W|DHDDS_uc010ofd.1_Missense_Mutation_p.R14W	NM_205861	NP_995583	Q86SQ9	DHDDS_HUMAN	dehydrodolichyl diphosphate synthase isoform b	14							protein binding|transferase activity, transferring alkyl or aryl (other than methyl) groups			breast(3)	3		all_cancers(24;2.04e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.0161)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.166)|LUSC - Lung squamous cell carcinoma(448;0.239)		ACTTTGGGAGCGGTTCTGTGC	0.448													28	71					0	0	1	0	0	
RPS6KA1	6195	broad.mit.edu	37	1	26883500	26883500	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:26883500T>C	uc001bmr.1	+	13	1156	c.993T>C	c.(991-993)CGT>CGC	p.R331R	RPS6KA1_uc010ofe.1_Silent_p.R239R|RPS6KA1_uc010off.1_Silent_p.R315R|RPS6KA1_uc001bms.1_Silent_p.R340R|RPS6KA1_uc009vsl.1_Silent_p.R174R	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	331	AGC-kinase C-terminal.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		AGCTATACCGTCGTGAGATCA	0.602													5	93					0	0	1	0	0	
GPR3	2827	broad.mit.edu	37	1	27720612	27720612	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:27720612G>T	uc001bod.2	+	2	405	c.310G>T	c.(310-312)GGC>TGC	p.G104C		NM_005281	NP_005272	P46089	GPR3_HUMAN	G protein-coupled receptor 3	104	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane				ovary(1)	1		Breast(348;1.53e-05)|Ovarian(437;0.0606)|all_lung(284;0.157)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.81e-26)|Colorectal(126;1.24e-08)|KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;4.45e-06)|Lung(427;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|LUSC - Lung squamous cell carcinoma(448;0.008)|READ - Rectum adenocarcinoma(331;0.0419)		CTTCTGCATCGGCTCAGCGGA	0.637													3	55					3.59834e-05	3.74717e-05	1	1	0	
SPOCD1	90853	broad.mit.edu	37	1	32280324	32280324	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:32280324C>A	uc001bts.1	-	2	669	c.611G>T	c.(610-612)AGG>ATG	p.R204M	SPOCD1_uc001btu.2_Missense_Mutation_p.R204M|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	204					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CTTTCTTACCCTCACAGGGAC	0.577													7	108					0.00307968	0.00313834	1	1	0	
LCK	3932	broad.mit.edu	37	1	32745341	32745341	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:32745341C>T	uc001bux.2	+	10	1172	c.1034C>T	c.(1033-1035)GCA>GTA	p.A345V	LCK_uc001buy.2_Missense_Mutation_p.A345V|LCK_uc001buz.2_Missense_Mutation_p.A375V|LCK_uc010ohc.1_Missense_Mutation_p.A389V|LCK_uc001bva.2_Missense_Mutation_p.A352V	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	345	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CTGGACATGGCAGCCCAAGTA	0.557			T	TRB@	T-ALL								59	131					0	0	1	0	0	
MARCKSL1	65108	broad.mit.edu	37	1	32800476	32800476	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:32800476A>G	uc001bvd.2	-	2	510	c.310T>C	c.(310-312)TCC>CCC	p.S104P		NM_023009	NP_075385	P49006	MRP_HUMAN	MARCKS-like 1	104						plasma membrane	calmodulin binding			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTCTTGAAGGACAGGCCGCTC	0.572													10	46					0	0	1	0	0	
TRIM62	55223	broad.mit.edu	37	1	33613190	33613190	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:33613190G>A	uc001bxb.2	-	5	1654	c.1016C>T	c.(1015-1017)TCG>TTG	p.S339L		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	339	B30.2/SPRY.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				ACCCAGCACCGACACCTCCAC	0.617													17	59					0	0	1	0	0	
TRIM62	55223	broad.mit.edu	37	1	33625397	33625397	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:33625397T>C	uc001bxb.2	-	3	1291	c.653A>G	c.(652-654)TAC>TGC	p.Y218C		NM_018207	NP_060677	Q9BVG3	TRI62_HUMAN	tripartite motif-containing 62	218	Potential.					intracellular	zinc ion binding				0		Myeloproliferative disorder(586;0.0393)				CTGCTGGCTGTAGCGCTGGAC	0.667													5	90					0	0	1	0	0	
CSMD2	114784	broad.mit.edu	37	1	34011774	34011774	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:34011774C>T	uc001bxn.1	-	56	8560	c.8531G>A	c.(8530-8532)GGC>GAC	p.G2844D	CSMD2_uc001bxm.1_Missense_Mutation_p.G2988D	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2844	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAAACGGATGCCATGAGCCGG	0.572													12	20					0	0	1	0	0	
ZMYM4	9202	broad.mit.edu	37	1	35873680	35873680	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:35873680T>C	uc001byt.2	+	26	3948	c.3868T>C	c.(3868-3870)TTT>CTT	p.F1290L	ZMYM4_uc009vuu.2_Missense_Mutation_p.F1258L|ZMYM4_uc001byu.2_Missense_Mutation_p.F966L|ZMYM4_uc009vuv.2_Missense_Mutation_p.F1029L	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1290					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CTTATGCCAGTTTATCCAAGA	0.393													12	138					0	0	1	0	0	
MTF1	4520	broad.mit.edu	37	1	38305654	38305654	+	Silent	SNP	C	T	T	rs143831879		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:38305654C>T	uc001cce.1	-	3	726	c.585G>A	c.(583-585)ACG>ACA	p.T195T	MTF1_uc009vvj.1_5'UTR	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	195						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GCTTCTCCTTCGTGTGCACTC	0.537													23	64					0	0	1	0	0	
MFSD2A	84879	broad.mit.edu	37	1	40430970	40430970	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:40430970C>T	uc001cev.2	+	4	661	c.480C>T	c.(478-480)TAC>TAT	p.Y160Y	MFSD2A_uc010ojb.1_Silent_p.Y110Y|MFSD2A_uc001ceu.2_Silent_p.Y147Y|MFSD2A_uc010ojc.1_5'UTR|MFSD2A_uc009vvy.2_RNA|MFSD2A_uc001cex.2_5'Flank	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	160					transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CCTATTGGTACCTGCTTTTCT	0.587													12	66					0	0	1	0	0	
CAP1	10487	broad.mit.edu	37	1	40529914	40529914	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:40529914T>A	uc001cfa.3	+	5	539	c.310T>A	c.(310-312)TTG>ATG	p.L104M	CAP1_uc001cey.3_Missense_Mutation_p.L104M|CAP1_uc001cez.3_Missense_Mutation_p.L104M|CAP1_uc009vvz.2_Missense_Mutation_p.L104M|CAP1_uc010oje.1_Intron	NM_006367	NP_006358	Q01518	CAP1_HUMAN	adenylyl cyclase-associated protein	104					activation of adenylate cyclase activity|axon guidance|establishment or maintenance of cell polarity|platelet activation|platelet degranulation|signal transduction	plasma membrane	actin binding			ovary(1)	1	Lung NSC(20;5.03e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;4.63e-18)|Epithelial(16;1.27e-16)|all cancers(16;2.3e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GCTTTCCGATTTGTTGGCACC	0.428													6	83					0	0	1	0	0	
PPT1	5538	broad.mit.edu	37	1	40546070	40546070	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:40546070C>T	uc001cfb.2	-	6	858	c.626G>A	c.(625-627)CGG>CAG	p.R209Q	PPT1_uc010ojf.1_Missense_Mutation_p.R159Q|PPT1_uc010ojg.1_Missense_Mutation_p.R106Q|PPT1_uc009vwa.2_RNA	NM_000310	NP_000301	P50897	PPT1_HUMAN	palmitoyl-protein thioesterase 1 isoform 1	209					brain development|cofactor metabolic process|cofactor transport|DNA fragmentation involved in apoptotic nuclear change|lysosomal lumen acidification|membrane raft organization|negative regulation of cell growth|negative regulation of neuron apoptosis|neuron development|pinocytosis|positive regulation of pinocytosis|positive regulation of receptor-mediated endocytosis|protein depalmitoylation|protein transport|receptor-mediated endocytosis|regulation of synapse structure and activity|sphingolipid catabolic process|visual perception	axon|cytosol|Golgi apparatus|lysosome|membrane fraction|membrane raft|nucleus|synaptic vesicle	palmitoyl-(protein) hydrolase activity|palmitoyl-CoA hydrolase activity	p.R209Q(1)		ovary(1)	1	Lung NSC(20;3.43e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1e-18)|Epithelial(16;3.6e-17)|all cancers(16;1.1e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGTGCTTACCCGCTCCTGATT	0.478													76	193					0	0	1	0	0	
PPT1	5538	broad.mit.edu	37	1	40555088	40555088	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:40555088T>C	uc001cfb.2	-	5	762	c.530A>G	c.(529-531)CAG>CGG	p.Q177R	PPT1_uc010ojf.1_Missense_Mutation_p.Q127R|PPT1_uc010ojg.1_Missense_Mutation_p.Q74R|PPT1_uc009vwa.2_RNA	NM_000310	NP_000301	P50897	PPT1_HUMAN	palmitoyl-protein thioesterase 1 isoform 1	177			Q -> E (in CLN1).		brain development|cofactor metabolic process|cofactor transport|DNA fragmentation involved in apoptotic nuclear change|lysosomal lumen acidification|membrane raft organization|negative regulation of cell growth|negative regulation of neuron apoptosis|neuron development|pinocytosis|positive regulation of pinocytosis|positive regulation of receptor-mediated endocytosis|protein depalmitoylation|protein transport|receptor-mediated endocytosis|regulation of synapse structure and activity|sphingolipid catabolic process|visual perception	axon|cytosol|Golgi apparatus|lysosome|membrane fraction|membrane raft|nucleus|synaptic vesicle	palmitoyl-(protein) hydrolase activity|palmitoyl-CoA hydrolase activity			ovary(1)	1	Lung NSC(20;3.43e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1e-18)|Epithelial(16;3.6e-17)|all cancers(16;1.1e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ATACCGTTCCTGAACAACTTT	0.463													5	93					0	0	1	0	0	
ZNF642	339559	broad.mit.edu	37	1	40945120	40945120	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:40945120G>A	uc001cfo.2	+	2	381	c.87G>A	c.(85-87)GCG>GCA	p.A29A	ZNF642_uc009vwb.2_Silent_p.A29A|ZNF642_uc010ojk.1_Silent_p.A29A	NM_198494	NP_940896	Q49AA0	ZN642_HUMAN	zinc finger protein 642	29	SCAN box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.81e-19)			TGGAGGGGGCGCCCCTGTGGG	0.547													7	25					0	0	1	0	0	
FOXJ3	22887	broad.mit.edu	37	1	42645440	42645440	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:42645440G>A	uc001che.2	-	15	2122	c.1810C>T	c.(1810-1812)CGG>TGG	p.R604W	FOXJ3_uc001chf.2_Missense_Mutation_p.R604W|FOXJ3_uc001chg.2_Missense_Mutation_p.R604W	NM_014947	NP_055762	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	604					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)	2	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGGGAACGCCGCATCTGGAAG	0.507													14	151					0	0	1	0	0	
EBNA1BP2	10969	broad.mit.edu	37	1	43636531	43636531	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:43636531C>T	uc001cin.2	-	4	540	c.343G>A	c.(343-345)GCA>ACA	p.A115T	EBNA1BP2_uc001cio.2_Missense_Mutation_p.A170T|WDR65_uc010ojz.1_5'Flank|WDR65_uc001cip.1_5'Flank|WDR65_uc001ciq.1_5'Flank|EBNA1BP2_uc001cim.2_Missense_Mutation_p.A10T|EBNA1BP2_uc010ojx.1_Missense_Mutation_p.A170T	NM_006824	NP_006815	Q99848	EBP2_HUMAN	EBNA1 binding protein 2 isoform 2	115					ribosome biogenesis	membrane fraction|nucleolus	protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCAAGCACTGCGGCCTGGGCT	0.507													49	160					0	0	1	0	0	
ZSWIM5	57643	broad.mit.edu	37	1	45484249	45484249	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:45484249A>G	uc001cnd.2	-	14	3663	c.3435T>C	c.(3433-3435)GCT>GCC	p.A1145A		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	1145							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					AGGTCTCCCGAGCCTTGCTTA	0.502											OREG0013450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	131					0	0	1	0	0	
MUTYH	4595	broad.mit.edu	37	1	45797709	45797709	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:45797709T>C	uc001cnm.2	-	11	1190	c.974A>G	c.(973-975)GAC>GGC	p.D325G	MUTYH_uc009vxn.2_Missense_Mutation_p.D150G|MUTYH_uc001cnf.2_Missense_Mutation_p.D300G|MUTYH_uc009vxo.2_Missense_Mutation_p.D300G|MUTYH_uc001cng.2_Missense_Mutation_p.D311G|MUTYH_uc001cnj.2_Missense_Mutation_p.D208G|MUTYH_uc001cni.2_Missense_Mutation_p.D300G|MUTYH_uc001cnh.2_Missense_Mutation_p.D301G|MUTYH_uc001cno.2_Missense_Mutation_p.D208G|MUTYH_uc001cnk.2_Missense_Mutation_p.D185G|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Missense_Mutation_p.D314G|MUTYH_uc009vxp.2_Missense_Mutation_p.D328G|MUTYH_uc001cnn.2_Missense_Mutation_p.D315G	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	325					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					CTCCTCCACGTCAGGACTGCC	0.572			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				6	84					0	0	1	0	0	
AKR1A1	10327	broad.mit.edu	37	1	46033700	46033700	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:46033700T>C	uc001cod.2	+	6	867	c.403T>C	c.(403-405)TAC>CAC	p.Y135H	AKR1A1_uc009vxw.2_3'UTR|AKR1A1_uc001coe.2_Missense_Mutation_p.Y135H|AKR1A1_uc001cof.2_Silent_p.A7A|AKR1A1_uc001cog.2_RNA	NM_006066	NP_006057	P14550	AK1A1_HUMAN	aldo-keto reductase family 1, member A1	135					glucose metabolic process		alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					GACTATATGCTACGACTCCAC	0.582													4	35					0	0	1	0	0	
DMBX1	127343	broad.mit.edu	37	1	46977911	46977911	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:46977911G>T	uc001cpx.2	+	4	909	c.894G>T	c.(892-894)GCG>GCT	p.A298A	DMBX1_uc001cpw.2_Silent_p.A293A	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	298					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTGCAGCGGCGGCTGCTGCTG	0.662													4	31					0.150653	0.151361	1	1	0	
CYP4X1	260293	broad.mit.edu	37	1	47512210	47512210	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:47512210C>T	uc001cqt.2	+	9	1395	c.1145C>T	c.(1144-1146)CCG>CTG	p.P382L	CYP4X1_uc001cqr.2_Missense_Mutation_p.P381L|CYP4X1_uc001cqs.2_Missense_Mutation_p.P317L	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	382						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CCTGCAGTCCCGTCCATTTCC	0.512													14	56					0	0	1	0	0	
ZFYVE9	9372	broad.mit.edu	37	1	52805802	52805802	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:52805802G>A	uc001cto.2	+	17	4010	c.3838G>A	c.(3838-3840)GTA>ATA	p.V1280I	ZFYVE9_uc001ctp.2_Missense_Mutation_p.V1221I	NM_004799	NP_004790	O95405	ZFYV9_HUMAN	zinc finger, FYVE domain containing 9 isoform 3	1280					endocytosis|SMAD protein complex assembly|SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	early endosome membrane	metal ion binding|protein binding|receptor activity|serine-type peptidase activity			ovary(2)|lung(2)|central_nervous_system(2)|skin(2)	8						TTTTAGTGTCGTAAGTCCTAT	0.368													15	37					0	0	1	0	0	
ZCCHC11	23318	broad.mit.edu	37	1	52940630	52940630	+	Silent	SNP	G	A	A	rs150767107	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:52940630G>A	uc001ctx.2	-	13	2835	c.2601C>T	c.(2599-2601)ACC>ACT	p.T867T	ZCCHC11_uc001cty.2_Silent_p.T867T|ZCCHC11_uc001ctz.2_Silent_p.T867T|ZCCHC11_uc009vze.1_Silent_p.T867T|ZCCHC11_uc009vzf.1_Silent_p.T626T|ZCCHC11_uc001cub.2_Silent_p.T867T	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	867					miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						CAGATGTGTCGGTGCACACAC	0.423													24	48					0	0	1	0	0	
ZYG11B	79699	broad.mit.edu	37	1	53237431	53237431	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:53237431C>T	uc001cuj.2	+	3	1131	c.936C>T	c.(934-936)GGC>GGT	p.G312G	ZYG11B_uc009vzg.2_RNA|ZYG11B_uc010onj.1_Silent_p.G303G	NM_024646	NP_078922	Q9C0D3	ZY11B_HUMAN	zyg-11 homolog B	312							protein binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TCCTCACAGGCGAAGGACATT	0.373													30	96					0	0	1	0	0	
TMEM59	9528	broad.mit.edu	37	1	54509118	54509118	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:54509118G>A	uc001cwp.2	-	4	721	c.471C>T	c.(469-471)TCC>TCT	p.S157S	TMEM59_uc001cwn.2_Silent_p.S20S|TMEM59_uc001cwo.2_Silent_p.S20S|TMEM59_uc001cwq.2_Silent_p.S157S|TMEM59_uc001cwr.2_Silent_p.S90S|TMEM59_uc001cws.1_Silent_p.S168S	NM_004872	NP_004863	Q9BXS4	TMM59_HUMAN	thymic dendritic cell-derived factor 1	157	Extracellular (Potential).					Golgi membrane|integral to membrane					0						AGCTCTGTGCGGAGTCCATCA	0.393													5	64					0	0	1	0	0	
ACOT11	26027	broad.mit.edu	37	1	55064971	55064971	+	Missense_Mutation	SNP	G	A	A	rs141264387		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:55064971G>A	uc001cxm.1	+	8	849	c.767G>A	c.(766-768)CGG>CAG	p.R256Q	ACOT11_uc001cxj.1_Missense_Mutation_p.R134Q|ACOT11_uc001cxl.1_Missense_Mutation_p.R256Q	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	256	Acyl coenzyme A hydrolase 2.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						CTCCTCAGCCGGCTCTGCCGT	0.527													5	106					0	0	1	0	0	
ACOT11	26027	broad.mit.edu	37	1	55073633	55073633	+	Silent	SNP	G	A	A	rs142120798		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:55073633G>A	uc001cxm.1	+	15	1603	c.1521G>A	c.(1519-1521)GCG>GCA	p.A507A	ACOT11_uc001cxj.1_Silent_p.A385A|ACOT11_uc001cxl.1_Silent_p.A507A	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	507	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						ATGTCATCGCGCTGAGGTCGG	0.637													19	79					0	0	1	0	0	
FGGY	55277	broad.mit.edu	37	1	59812011	59812011	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:59812011T>C	uc001czi.3	+	4	618	c.406T>C	c.(406-408)TAC>CAC	p.Y136H	FGGY_uc001czg.2_Missense_Mutation_p.Y24H|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.Y136H|FGGY_uc001czj.3_Missense_Mutation_p.Y136H|FGGY_uc001czk.3_Missense_Mutation_p.Y24H|FGGY_uc001czl.3_Intron	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	136					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					TGTCCTCCAGTACGTCGGGGG	0.507													7	42					0	0	1	0	0	
ANGPTL3	27329	broad.mit.edu	37	1	63064448	63064448	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:63064448C>A	uc001das.1	+	2	628	c.577C>A	c.(577-579)CAT>AAT	p.H193N	DOCK7_uc001dan.2_Intron|DOCK7_uc001dao.2_Intron|DOCK7_uc001dap.2_Intron|DOCK7_uc001daq.2_Intron|DOCK7_uc009wah.1_Intron	NM_014495	NP_055310	Q9Y5C1	ANGL3_HUMAN	angiopoietin-like 3 precursor	193	Potential.				acylglycerol homeostasis|artery morphogenesis|cell-matrix adhesion|cholesterol homeostasis|cholesterol metabolic process|fatty acid metabolic process|glycerol metabolic process|integrin-mediated signaling pathway|lipid storage|negative regulation of lipoprotein lipase activity|negative regulation of phospholipase activity|phospholipid catabolic process|phospholipid homeostasis|positive regulation of angiogenesis|positive regulation of cell migration|positive regulation of lipid catabolic process|triglyceride homeostasis	extracellular space	cell surface binding|growth factor activity|integrin binding|phospholipase inhibitor activity				0						AAACCAACAGCATAGTCAAAT	0.328													18	43					1.33834e-09	1.43292e-09	1	1	0	
ITGB3BP	23421	broad.mit.edu	37	1	63920100	63920100	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:63920100G>T	uc001dba.1	-	6	409	c.378C>A	c.(376-378)TCC>TCA	p.S126S	ITGB3BP_uc001dbb.1_Silent_p.S165S|ITGB3BP_uc001dbc.1_RNA|ITGB3BP_uc001dbd.1_RNA|ITGB3BP_uc009wak.1_Silent_p.S148S|ITGB3BP_uc001dbe.1_Silent_p.S39S	NM_014288	NP_055103	Q13352	CENPR_HUMAN	integrin beta 3 binding protein	126					apoptosis|cell adhesion|CenH3-containing nucleosome assembly at centromere|induction of apoptosis by extracellular signals|mitotic prometaphase|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome, centromeric region|cytosol|membrane fraction|nucleoplasm	protein C-terminus binding|signal transducer activity				0						GTGATGCACAGGAGATTCCAA	0.333													7	48					1.12685e-05	1.18209e-05	1	1	0	
ROR1	4919	broad.mit.edu	37	1	64624767	64624767	+	Silent	SNP	C	T	T	rs149862457	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:64624767C>T	uc001dbj.2	+	8	1677	c.1278C>T	c.(1276-1278)TGC>TGT	p.C426C	uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	426	Helical; (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						TCTTCATTTGCGTCTGTCGGA	0.443													14	107					0	0	1	0	0	
JAK1	3716	broad.mit.edu	37	1	65310493	65310493	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:65310493C>T	uc001dbu.1	-	16	2444	c.2195G>A	c.(2194-2196)GGC>GAC	p.G732D	JAK1_uc009wam.1_Missense_Mutation_p.G720D|JAK1_uc009wal.1_5'UTR	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	732	Protein kinase 1.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GATGAATGGGCCACACTCACT	0.562			Mis		ALL								9	79					0	0	1	0	0	
JAK1	3716	broad.mit.edu	37	1	65310571	65310571	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:65310571T>G	uc001dbu.1	-	16	2366	c.2117A>C	c.(2116-2118)GAG>GCG	p.E706A	JAK1_uc009wam.1_Missense_Mutation_p.E694A|JAK1_uc009wal.1_5'UTR	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	706	Protein kinase 1.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GTCTTTATCCTCCTGCAGAGT	0.502			Mis		ALL								4	55					0	0	1	0	0	
LRRC7	57554	broad.mit.edu	37	1	70488956	70488956	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:70488956G>A	uc001dep.2	+	15	1609	c.1579G>A	c.(1579-1581)GCA>ACA	p.A527T	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	527						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CCCACAGCTGGCATGGGGTTG	0.552													12	101					0	0	1	0	0	
TNNI3K	51086	broad.mit.edu	37	1	74716398	74716398	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:74716398G>A	uc001dgf.1	+	4	329	c.278G>A	c.(277-279)CGC>CAC	p.R93H	TNNI3K_uc001dgc.1_Missense_Mutation_p.R194H|TNNI3K_uc001dgd.2_Missense_Mutation_p.R194H|TNNI3K_uc001dge.1_Missense_Mutation_p.R194H	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	93	ANK 1.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						AAAGGGCTCCGCCCATCTCGA	0.398													20	40					0	0	1	0	0	
NEXN	91624	broad.mit.edu	37	1	78392295	78392295	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:78392295T>C	uc001dic.3	+	7	983	c.686T>C	c.(685-687)ATG>ACG	p.M229T	NEXN_uc001dia.3_Missense_Mutation_p.M215T|NEXN_uc009wcb.1_Missense_Mutation_p.M151T|NEXN_uc001dib.3_Missense_Mutation_p.M165T|NEXN_uc001did.1_Missense_Mutation_p.M139T|NEXN_uc001dif.1_Missense_Mutation_p.M121T	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	229	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		TCATTAGTTATGGTAAATTTT	0.328													5	78					0	0	1	0	0	
IFI44L	10964	broad.mit.edu	37	1	79107475	79107475	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:79107475C>T	uc010oro.1	+	9	1519	c.1340C>T	c.(1339-1341)GCG>GTG	p.A447V	IFI44L_uc010orp.1_Missense_Mutation_p.A184V|IFI44L_uc010orq.1_Missense_Mutation_p.A184V	NM_006820	NP_006811	Q53G44	IF44L_HUMAN	interferon-induced protein 44-like	447						cytoplasm					0						ATTGAGAGAGCGTTACAGCCC	0.468													68	196					0	0	1	0	0	
ELTD1	64123	broad.mit.edu	37	1	79356867	79356867	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:79356867A>T	uc001diq.3	-	15	2201	c.2045T>A	c.(2044-2046)GTC>GAC	p.V682D		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	682	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		ACAACAGGGGACATTTTTGAA	0.274													9	37					0	0	1	0	0	
WDR63	126820	broad.mit.edu	37	1	85560140	85560140	+	Nonsense_Mutation	SNP	C	T	T	rs141494762	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:85560140C>T	uc001dkt.2	+	10	1266	c.1075C>T	c.(1075-1077)CGA>TGA	p.R359*	WDR63_uc009wcl.2_Nonsense_Mutation_p.R320*	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	359										upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		GGTAGCCGTGCGACTTTCTTT	0.418													24	308					0	0	1	0	0	
CYR61	3491	broad.mit.edu	37	1	86047684	86047684	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:86047684T>C	uc001dle.2	+	3	575	c.351T>C	c.(349-351)TGT>TGC	p.C117C	CYR61_uc001dlg.2_5'UTR|CYR61_uc009wcp.1_5'Flank	NM_001554	NP_001545	O00622	CYR61_HUMAN	cysteine-rich, angiogenic inducer, 61 precursor	117	VWFC.				cell proliferation|chemotaxis|positive regulation of BMP signaling pathway|positive regulation of cell migration|positive regulation of osteoblast differentiation|positive regulation of osteoblast proliferation|positive regulation of protein kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell growth|regulation of ERK1 and ERK2 cascade|wound healing, spreading of cells	extracellular region	heparin binding|insulin-like growth factor binding			central_nervous_system(1)	1				all cancers(265;0.0216)|Epithelial(280;0.0441)		AGCCCAACTGTAAACATCAGT	0.512											OREG0013583	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	110					0	0	1	0	0	
CLCA2	9635	broad.mit.edu	37	1	86909554	86909554	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:86909554A>G	uc001dlr.3	+	10	1735	c.1573A>G	c.(1573-1575)ATG>GTG	p.M525V		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	525	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		CAACGACACTATGTTTCTAGT	0.378													4	114					0	0	1	0	0	
GBP1	2633	broad.mit.edu	37	1	89525072	89525072	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:89525072G>A	uc001dmx.2	-	4	576	c.356C>T	c.(355-357)GCC>GTC	p.A119V		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	119					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		CAGGAGGACGGCCAGGGCGAA	0.507													8	167					0	0	1	0	0	
SLC44A3	126969	broad.mit.edu	37	1	95323005	95323005	+	Missense_Mutation	SNP	C	T	T	rs148388726		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:95323005C>T	uc001dqv.3	+	10	1294	c.1187C>T	c.(1186-1188)GCG>GTG	p.A396V	SLC44A3_uc001dqx.3_Missense_Mutation_p.A396V|SLC44A3_uc010otq.1_Missense_Mutation_p.A328V|SLC44A3_uc010otr.1_Missense_Mutation_p.A360V|SLC44A3_uc001dqw.3_Missense_Mutation_p.A348V|SLC44A3_uc010ots.1_Missense_Mutation_p.A316V|SLC44A3_uc009wds.2_Missense_Mutation_p.A299V|SLC44A3_uc010ott.1_Missense_Mutation_p.A316V|SLC44A3_uc010otu.1_RNA	NM_001114106	NP_001107578	Q8N4M1	CTL3_HUMAN	solute carrier family 44, member 3 isoform 1	396	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			kidney(1)	1		all_lung(203;0.000712)|Lung NSC(277;0.00316)		all cancers(265;0.039)|Epithelial(280;0.124)	Choline(DB00122)	TTCATCCTTGCGTGCCAGCAA	0.438													38	86					0	0	1	0	0	
AGL	178	broad.mit.edu	37	1	100379236	100379236	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:100379236C>T	uc001dsi.1	+	30	4503	c.4103C>T	c.(4102-4104)GCT>GTT	p.A1368V	AGL_uc001dsj.1_Missense_Mutation_p.A1368V|AGL_uc001dsk.1_Missense_Mutation_p.A1368V|AGL_uc001dsl.1_Missense_Mutation_p.A1368V|AGL_uc001dsm.1_Missense_Mutation_p.A1352V|AGL_uc001dsn.1_Missense_Mutation_p.A1351V	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1368	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		AGTTATGGAGCTTCAAGTCCT	0.368													48	83					0	0	1	0	0	
S1PR1	1901	broad.mit.edu	37	1	101704655	101704655	+	Missense_Mutation	SNP	G	A	A	rs140298731		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:101704655G>A	uc001dud.2	+	2	629	c.115G>A	c.(115-117)GCG>ACG	p.A39T	S1PR1_uc009weg.2_Missense_Mutation_p.A39T	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	39	Extracellular (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						GAATATCAGCGCGGACAAGGA	0.498											OREG0013620	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	69					0	0	1	0	0	
VAV3	10451	broad.mit.edu	37	1	108417568	108417568	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:108417568T>G	uc001dvk.1	-	2	330	c.276A>C	c.(274-276)GAA>GAC	p.E92D	VAV3_uc010ouw.1_Missense_Mutation_p.E92D|VAV3_uc001dvl.1_5'UTR|VAV3_uc010oux.1_Missense_Mutation_p.E92D	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	92	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CCTCGAAAAGTTCACTTTTCC	0.358													8	57					0	0	1	0	0	
AKNAD1	254268	broad.mit.edu	37	1	109359778	109359778	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:109359778C>T	uc001dwa.2	-	15	2540	c.2271G>A	c.(2269-2271)ATG>ATA	p.M757I	AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	757										ovary(3)	3						AGCTGTAGGTCATGAAAGCCT	0.458													12	19					0	0	1	0	0	
AKNAD1	254268	broad.mit.edu	37	1	109369904	109369904	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:109369904T>C	uc001dwa.2	-	11	2128	c.1859A>G	c.(1858-1860)AAG>AGG	p.K620R	AKNAD1_uc010ovb.1_Missense_Mutation_p.K327R|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	620										ovary(3)	3						TCCGTGGCCCTTTTTCTCCAC	0.413													5	152					0	0	1	0	0	
AHCYL1	10768	broad.mit.edu	37	1	110561031	110561031	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:110561031G>A	uc001dyx.2	+	12	1527	c.1160G>A	c.(1159-1161)CGC>CAC	p.R387H	AHCYL1_uc010ovw.1_Missense_Mutation_p.R340H|AHCYL1_uc001dyy.2_Missense_Mutation_p.R340H|AHCYL1_uc010ovx.1_Missense_Mutation_p.R340H	NM_006621	NP_006612	O43865	SAHH2_HUMAN	S-adenosylhomocysteine hydrolase-like 1	387	NAD binding (By similarity).				one-carbon metabolic process	endoplasmic reticulum	adenosylhomocysteinase activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0259)|Colorectal(144;0.123)|all cancers(265;0.134)|Epithelial(280;0.141)|LUSC - Lung squamous cell carcinoma(189;0.143)		CACTTGGATCGCATGAAAAAC	0.443													17	40					0	0	1	0	0	
KCNC4	3749	broad.mit.edu	37	1	110754251	110754251	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:110754251G>A	uc001dzh.2	+	1	187	c.130G>A	c.(130-132)GGC>AGC	p.G44S	KCNC4_uc001dzf.2_Missense_Mutation_p.G44S|KCNC4_uc009wfr.2_Missense_Mutation_p.G44S|KCNC4_uc001dzg.2_Missense_Mutation_p.G44S|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	44	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		CAACGTGGGCGGCACGCGACA	0.677													5	54					0	0	1	0	0	
DENND2D	79961	broad.mit.edu	37	1	111734909	111734909	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:111734909G>A	uc001eak.1	-	8	1025	c.825C>T	c.(823-825)GCC>GCT	p.A275A	DENND2D_uc001eal.1_Silent_p.A272A	NM_024901	NP_079177	Q9H6A0	DEN2D_HUMAN	DENN/MADD domain containing 2D	275	DENN.									ovary(1)	1		all_cancers(81;0.00198)|all_epithelial(167;0.000686)|all_lung(203;0.00318)|Lung NSC(277;0.00499)		Lung(183;0.0162)|Colorectal(144;0.069)|all cancers(265;0.0757)|LUSC - Lung squamous cell carcinoma(189;0.0845)|Epithelial(280;0.114)|COAD - Colon adenocarcinoma(174;0.14)		AGAGCAGTGCGGCAGCAGCAT	0.627													10	31					0	0	1	0	0	
ATP5F1	515	broad.mit.edu	37	1	112002112	112002112	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:112002112C>T	uc001ebc.2	+	6	968	c.547C>T	c.(547-549)CGG>TGG	p.R183W	ATP5F1_uc009wgf.1_Missense_Mutation_p.R330W|ATP5F1_uc001ebd.3_RNA	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	183					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		AGTTACTTACCGGGAACGACT	0.358													6	79					0	0	1	0	0	
SLC16A1	6566	broad.mit.edu	37	1	113460046	113460046	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:113460046G>A	uc001ecx.2	-	4	1814	c.982C>T	c.(982-984)CGA>TGA	p.R328*	SLC16A1_uc001ecy.2_Nonsense_Mutation_p.R328*|SLC16A1_uc001ecz.2_Nonsense_Mutation_p.R328*	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	328	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	TACTGAATTCGAGGTCTTATT	0.453													11	19					0	0	1	0	0	
MAGI3	260425	broad.mit.edu	37	1	114196613	114196613	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:114196613A>G	uc001edk.2	+	15	2783	c.2602A>G	c.(2602-2604)ACC>GCC	p.T868A	MAGI3_uc001edh.3_Missense_Mutation_p.T893A|MAGI3_uc001edi.3_Missense_Mutation_p.T868A|MAGI3_uc010owm.1_Missense_Mutation_p.T893A|MAGI3_uc001edj.2_Missense_Mutation_p.T589A	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	893	Interaction with LPAR2 and GRIN2B.|PDZ 5.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTCATCCTCACCTCCAAAAA	0.498													13	198					0	0	1	0	0	
PTPN22	26191	broad.mit.edu	37	1	114380697	114380697	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:114380697A>G	uc001eds.2	-	13	1455	c.1325T>C	c.(1324-1326)GTG>GCG	p.V442A	PTPN22_uc009wgq.2_Missense_Mutation_p.V387A|PTPN22_uc010owo.1_Missense_Mutation_p.V198A|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.V442A|PTPN22_uc009wgs.2_Missense_Mutation_p.V315A|PTPN22_uc001edu.2_Missense_Mutation_p.V442A	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	442					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTTATTGGCACCTTTGAATT	0.378													10	71					0	0	1	0	0	
AP4B1	10717	broad.mit.edu	37	1	114438057	114438057	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:114438057G>T	uc001eeb.2	-	10	1993	c.1850C>A	c.(1849-1851)GCC>GAC	p.A617D	uc001edv.1_Intron|AP4B1_uc001eec.2_Missense_Mutation_p.A449D|AP4B1_uc001eed.2_Missense_Mutation_p.A617D|AP4B1_uc010owp.1_Missense_Mutation_p.A518D|AP4B1_uc001eea.1_3'UTR|AP4B1_uc001eee.1_3'UTR	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	617					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAGCATGAGGGCTCCAGAATC	0.453													28	71					3.62531e-18	3.97345e-18	1	1	0	
PTGFRN	5738	broad.mit.edu	37	1	117487474	117487474	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:117487474G>A	uc001egv.1	+	3	729	c.592G>A	c.(592-594)GCC>ACC	p.A198T		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	198	Ig-like C2-type 2.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GAGCGTCCTCGCCCTGACCCA	0.746													5	11					0	0	1	0	0	
CD101	9398	broad.mit.edu	37	1	117552499	117552499	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:117552499T>C	uc010oxb.1	+	2	129	c.71T>C	c.(70-72)GTA>GCA	p.V24A	CD101_uc009whd.2_Missense_Mutation_p.V24A|CD101_uc010oxc.1_Missense_Mutation_p.V24A|CD101_uc010oxd.1_Missense_Mutation_p.V24A	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	24	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CAGAGAGAAGTAACAGTTCAG	0.458													8	112					0	0	1	0	0	
ZNF697	90874	broad.mit.edu	37	1	120165879	120165879	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:120165879C>T	uc001ehy.1	-	3	1201	c.1087G>A	c.(1087-1089)GTG>ATG	p.V363M		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	363	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		GAACGGCGCACGAAGCCCTTG	0.502													3	2					0	0	1	0	0	
HMGCS2	3158	broad.mit.edu	37	1	120295184	120295184	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:120295184A>C	uc001eid.2	-	8	1459	c.1408T>G	c.(1408-1410)TTC>GTC	p.F470V	HMGCS2_uc010oxj.1_Missense_Mutation_p.F428V|HMGCS2_uc001eie.2_Missense_Mutation_p.F378V	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	470					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		TTATGGTAGAATTGCTCTCTT	0.458													4	97					0	0	1	0	0	
NBPF9	400818	broad.mit.edu	37	1	144618165	144618165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:144618165G>A	uc009wig.1	+	6	438	c.362G>A	c.(361-363)CGC>CAC	p.R121H	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.R52H|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.R52H|NBPF9_uc010oyg.1_Missense_Mutation_p.R86H|NBPF9_uc009wii.1_5'UTR	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	121	Potential.					cytoplasm					0						GATGCCTCCCGCTCATTGAAT	0.547													12	259					0	0	1	0	0	
BCL9	607	broad.mit.edu	37	1	147091769	147091769	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:147091769G>A	uc001epq.2	+	8	2548	c.1808G>A	c.(1807-1809)CGA>CAA	p.R603Q	BCL9_uc010ozr.1_Missense_Mutation_p.R529Q	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	603	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCAGATGGTCGAAATTTTCCT	0.532			T	IGH@|IGL@	B-ALL								18	65					0	0	1	0	0	
PI4KB	5298	broad.mit.edu	37	1	151266555	151266555	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:151266555C>T	uc001ext.2	-	11	2623	c.2208G>A	c.(2206-2208)GGG>GGA	p.G736G	PI4KB_uc001exr.2_Silent_p.G748G|PI4KB_uc001exs.2_Silent_p.G721G|PI4KB_uc001exu.2_Silent_p.G721G|PI4KB_uc010pcw.1_Silent_p.G404G	NM_002651	NP_002642	Q9UBF8	PI4KB_HUMAN	catalytic phosphatidylinositol 4-kinase beta	736	PI3K/PI4K.				phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|receptor-mediated endocytosis	endosome|Golgi apparatus|mitochondrial outer membrane|perinuclear region of cytoplasm|rough endoplasmic reticulum membrane	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			ovary(2)|skin(2)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CGGCAATCAGCCCTTGCAGCA	0.557													17	61					0	0	1	0	0	
RFX5	5993	broad.mit.edu	37	1	151316207	151316207	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:151316207A>G	uc001exv.1	-	9	921	c.707T>C	c.(706-708)ATC>ACC	p.I236T	RFX5_uc001exw.1_Missense_Mutation_p.I236T|RFX5_uc009wmr.1_Missense_Mutation_p.I236T|RFX5_uc010pcx.1_Missense_Mutation_p.I196T	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	236						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCGGGCAGAGATGAGATGCTG	0.577													4	49					0	0	1	0	0	
TUFT1	7286	broad.mit.edu	37	1	151546762	151546762	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:151546762A>G	uc001eyl.2	+	8	673	c.611A>G	c.(610-612)TAC>TGC	p.Y204C	TUFT1_uc001eym.2_Missense_Mutation_p.Y179C|TUFT1_uc010pdf.1_Missense_Mutation_p.Y223C|TUFT1_uc010pdg.1_Missense_Mutation_p.Y152C	NM_020127	NP_064512	Q9NNX1	TUFT1_HUMAN	tuftelin 1 isoform 1	204	Potential.				bone mineralization|odontogenesis	cytoplasm|extracellular region	structural constituent of tooth enamel				0	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTCAGCCGGTACCAGAGGGAA	0.483											OREG0003906	type=REGULATORY REGION|Gene=TUFT1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	62					0	0	1	0	0	
LINGO4	339398	broad.mit.edu	37	1	151774279	151774279	+	Missense_Mutation	SNP	C	T	T	rs143989839		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:151774279C>T	uc001ezf.1	-	2	1092	c.902G>A	c.(901-903)CGG>CAG	p.R301Q		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	301	Extracellular (Potential).|LRR 10.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CTCCTGGAGCCGCACCAGGGG	0.612													22	41					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152282031	152282031	+	Silent	SNP	G	A	A	rs145158439	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:152282031G>A	uc001ezu.1	-	3	5367	c.5331C>T	c.(5329-5331)TCC>TCT	p.S1777S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1777	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCATGGGCGGACTCAGACT	0.607									Ichthyosis				80	200					0	0	1	0	0	
CRCT1	54544	broad.mit.edu	37	1	152487940	152487940	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:152487940G>A	uc001ezz.2	+	2	154	c.81G>A	c.(79-81)CCG>CCA	p.P27P		NM_019060	NP_061933	Q9UGL9	CRCT1_HUMAN	cysteine-rich C-terminal 1	27											0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			gtcccgccccggcgcccaccc	0.478													6	14					0	0	1	0	0	
LCE2D	353141	broad.mit.edu	37	1	152636751	152636751	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:152636751G>A	uc001fag.2	+	2	225	c.170G>A	c.(169-171)GGT>GAT	p.G57D		NM_178430	NP_848517	Q5TA82	LCE2D_HUMAN	late cornified envelope 2D	57	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTGCTGTGGTCCCAGCTCT	0.667													6	122					0	0	1	0	0	
SMCP	4184	broad.mit.edu	37	1	152857092	152857092	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:152857092G>A	uc001fat.2	+	2	339	c.194G>A	c.(193-195)TGC>TAC	p.C65Y		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	65	7.|7 X 7 (OR 8) AA approximate repeats.				penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAACCCCCATGCTGCATTCAG	0.542													25	166					0	0	1	0	0	
PGLYRP3	114771	broad.mit.edu	37	1	153279700	153279700	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:153279700C>T	uc001fbn.1	-	2	152	c.99G>A	c.(97-99)CCG>CCA	p.P33P		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	33					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGCAGGCGAGCGGTCTTGCCC	0.622													4	13					0	0	1	0	0	
GBA	2629	broad.mit.edu	37	1	155207185	155207185	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155207185G>A	uc001fjh.2	-	7	1096	c.946C>T	c.(946-948)CGC>TGC	p.R316C	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Missense_Mutation_p.R203C|GBA_uc010pfx.1_Missense_Mutation_p.R267C|GBA_uc001fji.2_Missense_Mutation_p.R316C|GBA_uc001fjj.2_Missense_Mutation_p.R316C|GBA_uc001fjk.2_Missense_Mutation_p.R316C|GBA_uc001fjl.2_Missense_Mutation_p.R316C|GBA_uc010pfy.1_Missense_Mutation_p.R229C|GBA_uc009wqk.1_Missense_Mutation_p.R229C	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	316					carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	ATGAGTAGGCGGACATTGTGG	0.572									Gaucher_disease_type_I				11	68					0	0	1	0	0	
ASH1L	55870	broad.mit.edu	37	1	155327459	155327459	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155327459T>C	uc009wqq.2	-	14	7372	c.6892A>G	c.(6892-6894)AAA>GAA	p.K2298E	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.K2293E	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2298					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGGCTGTTTTTGCTGCTGGTG	0.433													14	117					0	0	1	0	0	
DAP3	7818	broad.mit.edu	37	1	155691377	155691377	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155691377C>T	uc001flq.2	+	4	407	c.238C>T	c.(238-240)CCC>TCC	p.P80S	DAP3_uc001flr.2_Missense_Mutation_p.P80S|DAP3_uc001fls.2_Missense_Mutation_p.P80S|DAP3_uc010pgl.1_Missense_Mutation_p.P39S|DAP3_uc001flt.2_Intron|DAP3_uc001flu.2_Missense_Mutation_p.P80S|DAP3_uc010pgm.1_Intron	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	80					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GACTGTATTTCCCCATGGCCT	0.527													32	66					0	0	1	0	0	
RXFP4	339403	broad.mit.edu	37	1	155912164	155912164	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155912164A>G	uc010pgs.1	+	1	685	c.664A>G	c.(664-666)ACC>GCC	p.T222A		NM_181885	NP_871001	Q8TDU9	RL3R2_HUMAN	relaxin 3 receptor 2	222	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	angiotensin type II receptor activity				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CGTCATCACCACCAGCTACCT	0.672													7	44					0	0	1	0	0	
ARHGEF2	9181	broad.mit.edu	37	1	155920622	155920622	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155920622G>A	uc001fmt.2	-	20	2819	c.2701C>T	c.(2701-2703)CAG>TAG	p.Q901*	ARHGEF2_uc001fmq.2_Nonsense_Mutation_p.Q139*|ARHGEF2_uc001fmr.2_Nonsense_Mutation_p.Q873*|ARHGEF2_uc001fms.2_Nonsense_Mutation_p.Q900*|ARHGEF2_uc001fmu.2_Nonsense_Mutation_p.Q945*	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	901					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CACCTTACCTGTGGGGGGTTG	0.622													5	112					0	0	1	0	0	
SLC25A44	9673	broad.mit.edu	37	1	156170176	156170176	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:156170176C>T	uc001fnp.2	+	2	860	c.538C>T	c.(538-540)CGC>TGC	p.R180C	SLC25A44_uc010phc.1_Missense_Mutation_p.R71C|SLC25A44_uc009wrr.2_Missense_Mutation_p.R180C|SLC25A44_uc010phd.1_Intron|SLC25A44_uc010phe.1_Intron	NM_014655	NP_055470	Q96H78	S2544_HUMAN	solute carrier family 25, member 44	180	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	Hepatocellular(266;0.158)					TGATGGACTTCGCGGCTTCTA	0.562													31	75					0	0	1	0	0	
BGLAP	632	broad.mit.edu	37	1	156212601	156212601	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:156212601G>A	uc001fnt.2	+	3	224	c.152G>A	c.(151-153)CGC>CAC	p.R51H	BGLAP_uc001fns.1_Silent_p.A152A	NM_199173	NP_954642	P02818	OSTCN_HUMAN	osteocalcin preproprotein	51					bone mineralization|cell adhesion|odontogenesis|regulation of bone mineralization|regulation of bone resorption|regulation of osteoclast differentiation		calcium ion binding|hydroxyapatite binding|structural constituent of bone				0	Hepatocellular(266;0.158)				Phytonadione(DB01022)	AGACCCAGGCGCTACCTGTAT	0.627													9	38					0	0	1	0	0	
NTRK1	4914	broad.mit.edu	37	1	156837916	156837916	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:156837916T>C	uc001fqh.1	+	5	505	c.449T>C	c.(448-450)CTG>CCG	p.L150P	NTRK1_uc001fqf.1_Missense_Mutation_p.L120P|NTRK1_uc009wsi.1_5'UTR|NTRK1_uc001fqi.1_Missense_Mutation_p.L150P|NTRK1_uc009wsk.1_Missense_Mutation_p.L150P	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	150	LRRCT.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GGGAACCCTCTGCACTGTTCT	0.632			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			8	80					0	0	1	0	0	
KIRREL	55243	broad.mit.edu	37	1	158064555	158064555	+	Missense_Mutation	SNP	G	A	A	rs138458053		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:158064555G>A	uc001frn.3	+	15	2323	c.1919G>A	c.(1918-1920)CGT>CAT	p.R640H	KIRREL_uc010pib.1_Missense_Mutation_p.R540H|KIRREL_uc009wsq.2_Missense_Mutation_p.R476H|KIRREL_uc001fro.3_Missense_Mutation_p.R454H|uc001frp.2_5'Flank	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	640	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					CCCTCATCCCGTCTCTCCCAC	0.677													17	35					0	0	1	0	0	
OR10X1	128367	broad.mit.edu	37	1	158549198	158549198	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:158549198A>G	uc010pin.1	-	1	492	c.492T>C	c.(490-492)GCT>GCC	p.A164A		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	164	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CTGCAGTGCAAGCAGAGGCCA	0.463													8	18					0	0	1	0	0	
VANGL2	57216	broad.mit.edu	37	1	160385688	160385688	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:160385688C>T	uc001fwb.1	+	3	360	c.61C>T	c.(61-63)CGC>TGC	p.R21C	VANGL2_uc001fwc.1_Missense_Mutation_p.R21C	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	21	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCGCAGCTCCCGCAAGCACAG	0.657													12	20					0	0	1	0	0	
PVRL4	81607	broad.mit.edu	37	1	161049561	161049561	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:161049561G>A	uc001fxo.2	-	2	557	c.258C>T	c.(256-258)TAC>TAT	p.Y86Y		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	86	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CATGAAGCCCGTATTTGGAGT	0.687													18	40					0	0	1	0	0	
FCGR2A	2212	broad.mit.edu	37	1	161476213	161476213	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:161476213C>T	uc001gan.2	+	3	249	c.196C>T	c.(196-198)CGC>TGC	p.R66C	FCGR2A_uc001gam.2_Missense_Mutation_p.R65C|FCGR2A_uc001gao.2_RNA	NM_001136219	NP_001129691	P12318	FCG2A_HUMAN	Fc fragment of IgG, low affinity IIa, receptor	66	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCAGGGGGCTCGCAGCCCTGA	0.587													13	48					0	0	1	0	0	
ATF6	22926	broad.mit.edu	37	1	161736162	161736162	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:161736162G>T	uc001gbr.2	+	1	79	c.12G>T	c.(10-12)CCG>CCT	p.P4P	ATF6_uc001gbq.1_Silent_p.P4P	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	4	Cytoplasmic (Potential).|Transcription activation.				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			TGGGGGAGCCGGCTGGGGTTG	0.567													3	60					1.23904e-05	1.29739e-05	1	1	0	
RCSD1	92241	broad.mit.edu	37	1	167659290	167659290	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:167659290C>T	uc001gem.2	+	4	390	c.203C>T	c.(202-204)TCA>TTA	p.S68L	RCSD1_uc010pli.1_Missense_Mutation_p.S38L	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	68										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					CCATAGAAATCACCACCCAAT	0.458													6	100					0	0	1	0	0	
TBX19	9095	broad.mit.edu	37	1	168266967	168266967	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:168266967G>A	uc001gfl.2	+	4	660	c.609G>A	c.(607-609)ACG>ACA	p.T203T	TBX19_uc001gfj.3_Silent_p.T134T|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	203	T-box.				anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCAAGATAACGGCTCTCAAAA	0.348													10	22					0	0	1	0	0	
C1orf114	57821	broad.mit.edu	37	1	169394074	169394074	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:169394074T>C	uc001gga.1	-	2	260	c.92A>G	c.(91-93)GAA>GGA	p.E31G	C1orf114_uc001gfz.1_Missense_Mutation_p.E31G|C1orf114_uc009wvq.1_Missense_Mutation_p.E31G|C1orf114_uc001ggb.2_Missense_Mutation_p.E31G|C1orf114_uc001ggc.1_Missense_Mutation_p.E31G	NM_021179	NP_067002	Q5TID7	CA114_HUMAN	hypothetical protein LOC57821	31											0	all_hematologic(923;0.208)					ATCACTTTTTTCATTTTCATT	0.229													23	45					0	0	1	0	0	
C1orf129	80133	broad.mit.edu	37	1	170967338	170967338	+	Missense_Mutation	SNP	A	C	C	rs74760081		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:170967338A>C	uc001ghg.2	+	15	1649	c.1519A>C	c.(1519-1521)AGT>CGT	p.S507R	C1orf129_uc009wvy.2_Missense_Mutation_p.S314R|C1orf129_uc010plz.1_Missense_Mutation_p.S507R	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	507							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GGAGACCCTGAGTTATCTCTA	0.393													11	83					0	0	1	0	0	
DNM3	26052	broad.mit.edu	37	1	171956852	171956852	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:171956852C>T	uc001gie.2	+	3	468	c.292C>T	c.(292-294)CGC>TGC	p.R98C	DNM3_uc001gid.3_Missense_Mutation_p.R98C|DNM3_uc009wwb.2_Missense_Mutation_p.R98C|DNM3_uc001gif.2_Missense_Mutation_p.R98C	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	98					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TGATGAAGTTCGCCTTGAGAT	0.358													41	118					0	0	1	0	0	
SERPINC1	462	broad.mit.edu	37	1	173878804	173878804	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:173878804T>C	uc001gjt.2	-	5	1158	c.1039A>G	c.(1039-1041)ATG>GTG	p.M347V		NM_000488	NP_000479	P01008	ANT3_HUMAN	serpin peptidase inhibitor, clade C, member 1	347					blood coagulation|regulation of proteolysis	extracellular space|plasma membrane	heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(1)	1					Enoxaparin(DB01225)|Fondaparinux sodium(DB00569)|Heparin(DB01109)	ACCACCAGCATCATCTCCTCC	0.557													19	165					0	0	1	0	0	
TNR	7143	broad.mit.edu	37	1	175355252	175355252	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:175355252G>A	uc001gkp.1	-	6	1774	c.1693C>T	c.(1693-1695)CGG>TGG	p.R565W	TNR_uc009wwu.1_Missense_Mutation_p.R565W	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	565	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GAGCCAGGCCGCAGGGCCTGC	0.607													4	91					0	0	1	0	0	
FAM5B	57795	broad.mit.edu	37	1	177225078	177225078	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:177225078A>G	uc001glf.2	+	3	605	c.293A>G	c.(292-294)AAC>AGC	p.N98S	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_5'Flank	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	98						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGGAAGGTGAACAACTTGGCT	0.493											OREG0014006	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	75					0	0	1	0	0	
QSOX1	5768	broad.mit.edu	37	1	180155277	180155277	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:180155277G>A	uc001gnz.2	+	8	1052	c.977G>A	c.(976-978)CGC>CAC	p.R326H	QSOX1_uc001gny.2_Missense_Mutation_p.R326H|QSOX1_uc001goa.2_Missense_Mutation_p.R326H	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	326					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						GAAGGGCAGCGCCTGGTGGCC	0.577													7	40					0	0	1	0	0	
C1orf14	81626	broad.mit.edu	37	1	182921962	182921962	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:182921962C>T	uc001gpu.2	-	1	592	c.307G>A	c.(307-309)GCG>ACG	p.A103T	C1orf14_uc001gpv.2_5'UTR|C1orf14_uc010pnz.1_5'UTR|C1orf14_uc001gpw.2_5'UTR	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	175											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		AGGGGCTGCGCCTCCTCTTCA	0.597													13	20					0	0	1	0	0	
LAMC2	3918	broad.mit.edu	37	1	183197579	183197579	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:183197579T>C	uc001gqa.2	+	11	1853	c.1539T>C	c.(1537-1539)CCT>CCC	p.P513P	LAMC2_uc001gpz.3_Silent_p.P513P|LAMC2_uc010poa.1_Silent_p.P213P	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	513	Laminin EGF-like 6.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CAGTGAGGCCTTGTCAGCCCT	0.557											OREG0014041	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	53					0	0	1	0	0	
KCNT2	343450	broad.mit.edu	37	1	196288662	196288662	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:196288662G>A	uc001gtd.1	-	20	2360	c.2300C>T	c.(2299-2301)GCA>GTA	p.A767V	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Intron|KCNT2_uc001gtf.1_Intron|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Intron|KCNT2_uc001gth.1_Intron	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	767	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CCAACAGATTGCATCCAGAAA	0.413													5	84					0	0	1	0	0	
CAMSAP1L1	23271	broad.mit.edu	37	1	200818250	200818250	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:200818250A>G	uc001gvl.2	+	12	2656	c.2386A>G	c.(2386-2388)ACA>GCA	p.T796A	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.T785A|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.T769A	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	796						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AATGGGAAGGACAGCATTCCT	0.438													5	80					0	0	1	0	0	
KIF21B	23046	broad.mit.edu	37	1	200968582	200968582	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:200968582G>A	uc001gvs.1	-	13	2097	c.1780C>T	c.(1780-1782)CGA>TGA	p.R594*	KIF21B_uc001gvr.1_Nonsense_Mutation_p.R594*|KIF21B_uc009wzl.1_Nonsense_Mutation_p.R594*|KIF21B_uc010ppn.1_Nonsense_Mutation_p.R594*	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	594	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTCTCGTCTCGCTCTTCCTCC	0.627													5	72					0	0	1	0	0	
PPP1R15B	84919	broad.mit.edu	37	1	204378728	204378728	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:204378728T>C	uc001hav.3	-	1	2217	c.1812A>G	c.(1810-1812)TTA>TTG	p.L604L		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	604					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			TACAAGAAAGTAAGGTGTGAC	0.468													5	59					0	0	1	0	0	
C4BPA	722	broad.mit.edu	37	1	207300065	207300065	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:207300065C>A	uc001hfo.2	+	7	908	c.714C>A	c.(712-714)ACC>ACA	p.T238T		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	238	Sushi 4.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TAGAAATCACCTGTCGCAAGC	0.373													22	61					1.2476e-16	1.36217e-16	1	1	0	
CR1	1378	broad.mit.edu	37	1	207758095	207758095	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:207758095C>T	uc001hfy.2	+	25	4194	c.4054C>T	c.(4054-4056)CCC>TCC	p.P1352S	CR1_uc009xcl.1_Missense_Mutation_p.P902S|CR1_uc001hfx.2_Missense_Mutation_p.P1802S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1352	Extracellular (Potential).|Sushi 21.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CACATGTGACCCCCACCCAGA	0.512													21	147					0	0	1	0	0	
LAMB3	3914	broad.mit.edu	37	1	209804065	209804065	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:209804065C>T	uc001hhg.2	-	8	1228	c.838G>A	c.(838-840)GTC>ATC	p.V280I	LAMB3_uc009xco.2_Missense_Mutation_p.V280I|LAMB3_uc001hhh.2_Missense_Mutation_p.V280I|LAMB3_uc010psl.1_RNA|LAMB3_uc009xcp.1_Missense_Mutation_p.V216I	NM_001017402	NP_001017402	Q13751	LAMB3_HUMAN	laminin, beta 3 precursor	280	Laminin EGF-like 1.				cell adhesion|epidermis development|hemidesmosome assembly		structural molecule activity			central_nervous_system(2)|skin(2)|large_intestine(1)|ovary(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0519)		TGCTGGCAGACACAGACATCG	0.582													9	27					0	0	1	0	0	
USH2A	7399	broad.mit.edu	37	1	215956157	215956157	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:215956157C>T	uc001hku.1	-	53	10895	c.10508G>A	c.(10507-10509)AGT>AAT	p.S3503N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3503	Extracellular (Potential).|Fibronectin type-III 20.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CGTAGGGGGACTCACTCCTTG	0.413										HNSCC(13;0.011)			7	81					0	0	1	0	0	
EPRS	2058	broad.mit.edu	37	1	220152906	220152906	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:220152906C>T	uc001hly.1	-	27	4033	c.3763G>A	c.(3763-3765)GTT>ATT	p.V1255I		NM_004446	NP_004437	P07814	SYEP_HUMAN	glutamyl-prolyl tRNA synthetase	1255	Prolyl-tRNA synthetase.				glutamyl-tRNA aminoacylation|prolyl-tRNA aminoacylation|protein complex assembly	cytosol|soluble fraction	ATP binding|glutamate-tRNA ligase activity|proline-tRNA ligase activity|protein binding|RNA binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0735)	L-Glutamic Acid(DB00142)|L-Proline(DB00172)	TCTTCAAAAACGATTTCAAAC	0.368													5	62					0	0	1	0	0	
DUSP10	11221	broad.mit.edu	37	1	221875832	221875832	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:221875832C>T	uc001hmy.1	-	4	1553	c.1371G>A	c.(1369-1371)GAG>GAA	p.E457E	DUSP10_uc001hmx.1_Silent_p.E115E|DUSP10_uc001hmz.1_Silent_p.E115E	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	457					inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		CTTCCTCGAACTCTAGCAACT	0.468													10	164					0	0	1	0	0	
DUSP10	11221	broad.mit.edu	37	1	221912540	221912540	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:221912540A>G	uc001hmy.1	-	2	729	c.547T>C	c.(547-549)TAC>CAC	p.Y183H	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	183	Rhodanese.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		CTCTTGTTGTACTCCATGAAG	0.512													30	71					0	0	1	0	0	
HHIPL2	79802	broad.mit.edu	37	1	222696078	222696078	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:222696078T>C	uc001hnh.1	-	9	2098	c.2040A>G	c.(2038-2040)CGA>CGG	p.R680R		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	680					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TACCAGGCCCTCGCAATGTAT	0.567													21	239					0	0	1	0	0	
MIA3	375056	broad.mit.edu	37	1	222801804	222801804	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:222801804T>A	uc001hnl.2	+	4	1251	c.1242T>A	c.(1240-1242)GAT>GAA	p.D414E	MIA3_uc009xea.1_Missense_Mutation_p.D250E	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	414	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAAAAGAAGATGATGATGATG	0.418													9	72					0	0	1	0	0	
DISP1	84976	broad.mit.edu	37	1	223177005	223177005	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:223177005C>T	uc001hnu.1	+	8	2413	c.2266C>T	c.(2266-2268)CGG>TGG	p.R756W		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	756					diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		CCAGGTGTTCCGGTCGTCCCA	0.463													20	59					0	0	1	0	0	
MIXL1	83881	broad.mit.edu	37	1	226413384	226413384	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:226413384T>C	uc010pvm.1	+	2	570	c.570T>C	c.(568-570)GTT>GTC	p.V190V		NM_031944	NP_114150	Q9H2W2	MIXL1_HUMAN	Mix-like homeobox protein 1	190					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.109)		CAAACGGGGTTGGAGGGGGCA	0.517													5	70					0	0	1	0	0	
ITPKB	3707	broad.mit.edu	37	1	226924682	226924682	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:226924682C>T	uc010pvo.1	-	2	818	c.478G>A	c.(478-480)GCC>ACC	p.A160T	ITPKB_uc001hqh.2_Missense_Mutation_p.A160T	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	160							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GCTTGAATGGCGGAGCTCTGT	0.652													14	104					0	0	1	0	0	
CDC42BPA	8476	broad.mit.edu	37	1	227300012	227300012	+	Splice_Site	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:227300012C>T	uc001hqr.2	-	14	2944	c.2001_splice	c.e14+1	p.K667_splice	CDC42BPA_uc001hqs.2_Splice_Site_p.K586_splice|CDC42BPA_uc009xes.2_Splice_Site_p.K667_splice|CDC42BPA_uc010pvs.1_Splice_Site_p.K667_splice	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B						actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TCAAAAGATACCTTCAGTCCC	0.393													4	111					0	0	1	0	0	
SNAP47	116841	broad.mit.edu	37	1	227954678	227954678	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:227954678G>A	uc001hrf.2	+	4	1556	c.1142G>A	c.(1141-1143)CGT>CAT	p.R381H	SNAP47_uc001hqz.2_Missense_Mutation_p.R336H|SNAP47_uc001hra.2_Missense_Mutation_p.R139H|SNAP47_uc001hrd.2_Missense_Mutation_p.R381H|SNAP47_uc001hre.2_Missense_Mutation_p.R139H	NM_053052	NP_444280	Q5SQN1	SNP47_HUMAN	synaptosomal-associated protein, 47kDa	381						endomembrane system|membrane|perinuclear region of cytoplasm				ovary(1)	1						CTGATGGGCCGTACCCTGCAC	0.607													12	44					0	0	1	0	0	
OBSCN	84033	broad.mit.edu	37	1	228437865	228437865	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:228437865G>T	uc009xez.1	+	14	4277	c.4233G>T	c.(4231-4233)CAG>CAT	p.Q1411H	OBSCN_uc001hsn.2_Missense_Mutation_p.Q1411H	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1411	Ig-like 14.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGTGCAGCAGGCATGCCAGG	0.642													11	107					2.27111e-07	2.40752e-07	1	1	0	
OBSCN	84033	broad.mit.edu	37	1	228495858	228495858	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:228495858G>A	uc009xez.1	+	47	12557	c.12513G>A	c.(12511-12513)ACG>ACA	p.T4171T	OBSCN_uc001hsn.2_Silent_p.T4171T	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4171	Ig-like 43.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGGAGGTGACGGCCGATGAGG	0.597													16	56					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232581355	232581355	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:232581355C>T	uc001hvg.2	-	9	3431	c.3273G>A	c.(3271-3273)CCG>CCA	p.P1091P	SIPA1L2_uc001hvf.2_Silent_p.P165P	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1091					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GCTGTTGGCACGGCAGCCGGT	0.672													14	45					0	0	1	0	0	
TARBP1	6894	broad.mit.edu	37	1	234553890	234553890	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:234553890A>G	uc001hwd.2	-	22	3645	c.3645T>C	c.(3643-3645)ATT>ATC	p.I1215I		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1215					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GAATCAATATAATAATCCATT	0.264													3	34					0	0	1	0	0	
EDARADD	128178	broad.mit.edu	37	1	236557807	236557807	+	Splice_Site	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:236557807T>C	uc001hxu.1	+	1	126	c.61_splice	c.e1+2	p.D21_splice	EDARADD_uc001hxv.1_5'Flank	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A						cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			ACCAAGAGGGTATGTAGGCAT	0.428													7	81					0	0	1	0	0	
EDARADD	128178	broad.mit.edu	37	1	236590728	236590728	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:236590728G>A	uc001hxu.1	+	4	262	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	EDARADD_uc001hxv.1_Missense_Mutation_p.R56Q	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	66					cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AACTGCCCACGAAATTCAGAT	0.249													15	37					0	0	1	0	0	
MTR	4548	broad.mit.edu	37	1	237024537	237024537	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:237024537T>C	uc001hyi.3	+	20	2579	c.2156T>C	c.(2155-2157)GTT>GCT	p.V719A	MTR_uc010pxw.1_Missense_Mutation_p.V312A|MTR_uc010pxx.1_Intron|MTR_uc010pxy.1_Missense_Mutation_p.V573A	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	719	B12-binding N-terminal.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	ATGAAAATTGTTGGTGATCTT	0.348													14	103					0	0	1	0	0	
RYR2	6262	broad.mit.edu	37	1	237778123	237778123	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:237778123C>T	uc001hyl.1	+	37	5815	c.5695C>T	c.(5695-5697)CCA>TCA	p.P1899S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1899	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AATGAAACTGCCAGAGCCAGT	0.468													9	21					0	0	1	0	0	
CHRM3	1131	broad.mit.edu	37	1	240072331	240072331	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:240072331A>C	uc001hyp.2	+	5	2359	c.1580A>C	c.(1579-1581)AAT>ACT	p.N527T		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	527	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	ACCTTTTGGAATCTGGGCTAC	0.483													8	79					0	0	1	0	0	
FMN2	56776	broad.mit.edu	37	1	240370282	240370282	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:240370282G>A	uc010pyd.1	+	5	2395	c.2170G>A	c.(2170-2172)GAA>AAA	p.E724K	FMN2_uc010pye.1_Missense_Mutation_p.E728K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	724					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGTCTGTCTCGAAGCTCTCAG	0.532													10	32					0	0	1	0	0	
EXO1	9156	broad.mit.edu	37	1	242035457	242035457	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:242035457T>C	uc001hzh.2	+	12	1931	c.1391T>C	c.(1390-1392)GTA>GCA	p.V464A	EXO1_uc001hzi.2_Missense_Mutation_p.V464A|EXO1_uc001hzj.2_Missense_Mutation_p.V464A|EXO1_uc009xgq.2_Missense_Mutation_p.V463A	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	464	Interaction with MLH1.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			CCTGACCTGGTAAATGGACCT	0.363								Direct_reversal_of_damage|Editing_and_processing_nucleases					3	43					0	0	1	0	0	
ZNF238	10472	broad.mit.edu	37	1	244217371	244217371	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:244217371A>G	uc001iae.2	+	1	790	c.268A>G	c.(268-270)AAA>GAA	p.K90E	ZNF238_uc001iad.3_Missense_Mutation_p.K99E|ZNF238_uc001iaf.1_Missense_Mutation_p.K90E	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	90	BTB.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			ACTCCAGTTCAAAGACTTGCC	0.458													5	37					0	0	1	0	0	
ZNF238	10472	broad.mit.edu	37	1	244218475	244218475	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:244218475G>A	uc001iae.2	+	1	1894	c.1372G>A	c.(1372-1374)GTG>ATG	p.V458M	ZNF238_uc001iad.3_Missense_Mutation_p.V467M|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	458	C2H2-type 3.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			CCGCCATGCCGTGGTGCACAC	0.627													6	37					0	0	1	0	0	
ZNF124	7678	broad.mit.edu	37	1	247320205	247320205	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:247320205C>T	uc001ick.2	-	4	858	c.719G>A	c.(718-720)GGC>GAC	p.G240D	ZNF124_uc001ici.2_Intron|ZNF124_uc001icj.1_Missense_Mutation_p.G178D	NM_003431	NP_003422	Q15973	ZN124_HUMAN	zinc finger protein 124	240	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	all_cancers(71;5.07e-05)|all_epithelial(71;8.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00739)			GAAAGCTTTGCCACATTCCAT	0.443													10	95					0	0	1	0	0	
NLRP3	114548	broad.mit.edu	37	1	247587740	247587740	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:247587740T>C	uc001icr.2	+	5	1133	c.995T>C	c.(994-996)CTG>CCG	p.L332P	NLRP3_uc001ics.2_Missense_Mutation_p.L332P|NLRP3_uc001icu.2_Missense_Mutation_p.L332P|NLRP3_uc001icw.2_Missense_Mutation_p.L332P|NLRP3_uc001icv.2_Missense_Mutation_p.L332P|NLRP3_uc010pyw.1_Missense_Mutation_p.L330P|NLRP3_uc001ict.1_Missense_Mutation_p.L330P	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	332	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GACATTCTCCTGAGCAGCCTC	0.582													19	48					0	0	1	0	0	
OR11L1	391189	broad.mit.edu	37	1	248005009	248005009	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:248005009G>A	uc001idn.1	-	1	190	c.190C>T	c.(190-192)CAG>TAG	p.Q64*		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GAGAGATGCTGGAGGAACATG	0.557													3	37					0	0	1	0	0	
OR2L3	391192	broad.mit.edu	37	1	248223987	248223987	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:248223987G>A	uc001idx.1	+	1	4	c.4G>A	c.(4-6)GAA>AAA	p.E2K	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATGCCCCATGGAAAATTACAA	0.303													22	185					0	0	1	0	0	
OR2M5	127059	broad.mit.edu	37	1	248308959	248308959	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:248308959G>A	uc010pze.1	+	1	510	c.510G>A	c.(508-510)GGG>GGA	p.G170G		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			CCTACTGTGGGTCTCGGGAAA	0.443													24	283					0	0	1	0	0	
IDI2	91734	broad.mit.edu	37	10	1070565	1070565	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:1070565G>T	uc001ifv.1	-	2	164	c.99C>A	c.(97-99)GCC>GCA	p.A33A	C10orf110_uc010qaf.1_Intron|C10orf110_uc001ifx.3_Intron|C10orf110_uc001ifw.3_Intron|C10orf110_uc001ify.3_Intron	NM_033261	NP_150286	Q9BXS1	IDI2_HUMAN	isopentenyl-diphosphate delta isomerase 2	33					carotenoid biosynthetic process|cholesterol biosynthetic process	cytosol|peroxisome	hydrolase activity|isopentenyl-diphosphate delta-isomerase activity|metal ion binding				0		Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.143)	Epithelial(11;0.067)|OV - Ovarian serous cystadenocarcinoma(14;0.169)|all cancers(11;0.192)		TCTTGGTGTCGGCACCAATAA	0.478													18	35					3.32936e-07	3.52278e-07	1	1	0	
FBXO18	84893	broad.mit.edu	37	10	5948257	5948257	+	Missense_Mutation	SNP	C	T	T	rs150913018		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:5948257C>T	uc001iis.2	+	3	510	c.415C>T	c.(415-417)CGG>TGG	p.R139W	FBXO18_uc001iir.2_Missense_Mutation_p.R65W|FBXO18_uc009xig.2_Missense_Mutation_p.R65W|FBXO18_uc001iit.2_Missense_Mutation_p.R190W	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	139	F-box.				DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						CGGGACCAGCCGGTGGGATGG	0.617													8	20					0	0	1	0	0	
NMT2	9397	broad.mit.edu	37	10	15175100	15175100	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:15175100T>C	uc001inz.1	-	5	638	c.554A>G	c.(553-555)GAT>GGT	p.D185G	NMT2_uc001ioa.1_Missense_Mutation_p.D172G|NMT2_uc009xjo.1_Missense_Mutation_p.D185G|NMT2_uc010qbz.1_5'UTR	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2	185					N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						ATTGTCATCATCTTCTACGTA	0.418													9	76					0	0	1	0	0	
CUBN	8029	broad.mit.edu	37	10	17146585	17146585	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:17146585A>C	uc001ioo.2	-	12	1302	c.1250T>G	c.(1249-1251)TTT>TGT	p.F417C		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	417	EGF-like 6.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACACTTACAAAAATAACCAGA	0.373													3	19					0	0	1	0	0	
ST8SIA6	338596	broad.mit.edu	37	10	17363172	17363172	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:17363172G>A	uc001ipd.2	-	8	902	c.902C>T	c.(901-903)CCC>CTC	p.P301L	ST8SIA6_uc010qce.1_RNA	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	301	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						CAGGTACTTGGGATGGAAAAA	0.468													14	225					0	0	1	0	0	
CACNB2	783	broad.mit.edu	37	10	18828510	18828510	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:18828510C>T	uc001ipr.2	+	14	1900	c.1840C>T	c.(1840-1842)CGA>TGA	p.R614*	CACNB2_uc009xjz.1_Nonsense_Mutation_p.R364*|CACNB2_uc001ips.2_Nonsense_Mutation_p.R590*|CACNB2_uc001ipt.2_Nonsense_Mutation_p.R576*|CACNB2_uc001ipu.2_Nonsense_Mutation_p.R586*|CACNB2_uc001ipv.2_Nonsense_Mutation_p.R562*|CACNB2_uc009xka.1_Nonsense_Mutation_p.R548*|CACNB2_uc001ipw.2_Nonsense_Mutation_p.R521*|CACNB2_uc001ipx.2_Nonsense_Mutation_p.R559*|CACNB2_uc001ipz.2_Nonsense_Mutation_p.R536*|CACNB2_uc001ipy.2_Nonsense_Mutation_p.R560*|CACNB2_uc010qco.1_Nonsense_Mutation_p.R528*|CACNB2_uc001iqa.2_Nonsense_Mutation_p.R566*|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	614					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GGACGTGGATCGAGAGCAGGA	0.552													9	46					0	0	1	0	0	
PLXDC2	84898	broad.mit.edu	37	10	20465998	20465998	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:20465998G>A	uc001iqg.1	+	8	1591	c.954G>A	c.(952-954)TCG>TCA	p.S318S	PLXDC2_uc001iqh.1_Silent_p.S269S|PLXDC2_uc009xkc.1_RNA	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	318	Extracellular (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CCAACATTTCGGCTGTGGAGA	0.323													36	95					0	0	1	0	0	
PIP4K2A	5305	broad.mit.edu	37	10	22880634	22880634	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:22880634T>C	uc001irl.3	-	4	664	c.416A>G	c.(415-417)GAC>GGC	p.D139G	PIP4K2A_uc010qcu.1_5'UTR	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	139	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						GTATCTTTTGTCGTAGGAAGT	0.498													5	67					0	0	1	0	0	
ARMC3	219681	broad.mit.edu	37	10	23319585	23319585	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:23319585A>G	uc001irm.3	+	17	2189	c.2106A>G	c.(2104-2106)GTA>GTG	p.V702V	ARMC3_uc010qcv.1_Silent_p.V695V|ARMC3_uc010qcw.1_Silent_p.V439V	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	702							binding				0						TTATGGTGGTACCAAAATTTG	0.299													5	70					0	0	1	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24832970	24832970	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:24832970A>G	uc001iru.3	+	19	5174	c.4771A>G	c.(4771-4773)ACC>GCC	p.T1591A	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Missense_Mutation_p.T1274A|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Missense_Mutation_p.T427A	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1591					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGCCATTCGCACCGGAACTAA	0.483													22	65					0	0	1	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24834018	24834018	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:24834018C>T	uc001iru.3	+	20	5723	c.5320C>T	c.(5320-5322)CGC>TGC	p.R1774C	KIAA1217_uc001irs.2_Missense_Mutation_p.R1095C|KIAA1217_uc001irt.3_Missense_Mutation_p.R1140C|KIAA1217_uc010qcy.1_Missense_Mutation_p.R1205C|KIAA1217_uc010qcz.1_Missense_Mutation_p.R1180C|KIAA1217_uc001irw.2_Missense_Mutation_p.R924C|KIAA1217_uc001irz.2_Missense_Mutation_p.R858C|KIAA1217_uc001irx.2_Missense_Mutation_p.R1457C|KIAA1217_uc001iry.2_Missense_Mutation_p.R898C	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1774					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCAGGATCCCCGCCAATATCG	0.502													4	54					0	0	1	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24835181	24835181	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:24835181C>T	uc001iru.3	+	21	6163	c.5760C>T	c.(5758-5760)AGC>AGT	p.S1920S	KIAA1217_uc001irs.2_Silent_p.S1241S|KIAA1217_uc001irt.3_Silent_p.S1286S|KIAA1217_uc010qcy.1_Silent_p.S1351S|KIAA1217_uc010qcz.1_Silent_p.S1326S|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1920					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ATACTCCCAGCCTCACCAGCT	0.368													4	57					0	0	1	0	0	
MYO3A	53904	broad.mit.edu	37	10	26455050	26455050	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:26455050C>A	uc001isn.2	+	27	3414	c.3054C>A	c.(3052-3054)ACC>ACA	p.T1018T	MYO3A_uc009xko.1_Silent_p.T1018T|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1018	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GCCCTGACACCTGTGCCACCA	0.423													26	189					1.88708e-17	2.06434e-17	1	1	0	
ZNF248	57209	broad.mit.edu	37	10	38121220	38121220	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:38121220T>C	uc001izd.1	-	6	1562	c.1063A>G	c.(1063-1065)AAT>GAT	p.N355D	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Missense_Mutation_p.N355D	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	355					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCATTTTCATTGTAATCATAA	0.393													5	91					0	0	1	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38406985	38406985	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:38406985T>C	uc001izk.2	+	8	1725	c.906T>C	c.(904-906)CAT>CAC	p.H302H	ZNF37A_uc001izl.2_Silent_p.H302H|ZNF37A_uc001izm.2_Silent_p.H302H	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	302	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						ATGAATGTCATGAATGTGGGA	0.413													11	99					0	0	1	0	0	
OGDHL	55753	broad.mit.edu	37	10	50946001	50946001	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:50946001G>A	uc001jie.2	-	19	2651	c.2509C>T	c.(2509-2511)CGC>TGC	p.R837C	OGDHL_uc009xog.2_Missense_Mutation_p.R864C|OGDHL_uc010qgt.1_Missense_Mutation_p.R780C|OGDHL_uc010qgu.1_Missense_Mutation_p.R628C	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	837					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding	p.R837L(1)		pancreas(1)	1						ACCGGCTTGCGGAAGGGCAGC	0.652													47	99					0	0	1	0	0	
AGAP6	414189	broad.mit.edu	37	10	51769465	51769465	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:51769465A>G	uc001jix.3	+	8	1978	c.1580A>G	c.(1579-1581)GAG>GGG	p.E527G		NM_001077665	NP_001071133	Q5VW22	AGAP6_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	527					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			skin(1)	1						TGGCCAGTTGAGCTCAGGAAG	0.537													31	210					0	0	1	0	0	
DKK1	22943	broad.mit.edu	37	10	54074807	54074807	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:54074807G>A	uc001jjr.2	+	2	522	c.368G>A	c.(367-369)CGT>CAT	p.R123H	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor	123	DKK-type Cys-1.				negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						CGCTGCATGCGTCACGCTATG	0.562											OREG0020191	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	37					0	0	1	0	0	
SLC16A9	220963	broad.mit.edu	37	10	61412656	61412656	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:61412656G>A	uc010qig.1	-	6	1853	c.1404C>T	c.(1402-1404)GGC>GGT	p.G468G		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	468	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						GGACGCAGAAGCCACTAAAAT	0.433													6	70					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61846435	61846435	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:61846435C>A	uc001jky.2	-	30	3940	c.3748G>T	c.(3748-3750)GGG>TGG	p.G1250W	ANK3_uc001jkw.2_Missense_Mutation_p.G384W|ANK3_uc009xpa.2_Missense_Mutation_p.G384W|ANK3_uc001jkx.2_Missense_Mutation_p.G428W|ANK3_uc010qih.1_Missense_Mutation_p.G1251W|ANK3_uc001jkz.3_Missense_Mutation_p.G1244W|ANK3_uc001jla.1_Missense_Mutation_p.G316W|ANK3_uc001jlb.1_Missense_Mutation_p.G768W	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1250					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTAACCAAACCTGTAATGCTA	0.423													12	94					1.61879e-10	1.743e-10	1	1	0	
TET1	80312	broad.mit.edu	37	10	70426987	70426987	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:70426987C>T	uc001jok.3	+	7	5152	c.4647C>T	c.(4645-4647)ACC>ACT	p.T1549T		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1549					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GGCACCCTACCGACAGAAGAT	0.418													4	18					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70450635	70450635	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:70450635A>G	uc001jok.3	+	12	5980	c.5475A>G	c.(5473-5475)TCA>TCG	p.S1825S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1825					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TAAAAAGTTCAGACAACACTA	0.458													8	79					0	0	1	0	0	
DDX50	79009	broad.mit.edu	37	10	70696828	70696828	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:70696828C>T	uc001jou.2	+	12	1839	c.1732C>T	c.(1732-1734)CGA>TGA	p.R578*	DDX50_uc010qjc.1_Nonsense_Mutation_p.R578*	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	578						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						CTTTGAACCACGATCTTTGAT	0.398													24	92					0	0	1	0	0	
SUPV3L1	6832	broad.mit.edu	37	10	70968476	70968476	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:70968476G>T	uc001jpe.1	+	15	2101	c.2046G>T	c.(2044-2046)ACG>ACT	p.T682T	SUPV3L1_uc010qjd.1_Silent_p.T551T	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	682	Interaction with HBXIP, important for protein stability.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TGTCTGAGACGCATAAGCTGT	0.448													14	76					3.27435e-08	3.4883e-08	1	1	0	
SGPL1	8879	broad.mit.edu	37	10	72630885	72630885	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:72630885T>C	uc001jrm.2	+	10	1113	c.891T>C	c.(889-891)CCT>CCC	p.P297P	SGPL1_uc009xqk.2_RNA	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	297	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	TAATAGATCCTGTCCCTGAAG	0.438													24	46					0	0	1	0	0	
CDH23	64072	broad.mit.edu	37	10	73567408	73567408	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:73567408G>A	uc001jrx.3	+	57	8821	c.8444G>A	c.(8443-8445)CGT>CAT	p.R2815H	CDH23_uc001jsg.3_Missense_Mutation_p.R575H|CDH23_uc001jsh.3_Missense_Mutation_p.R575H|CDH23_uc001jsi.3_Missense_Mutation_p.R575H	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2815	Cadherin 26.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACACCTCCCCGTGGACCCTCC	0.622													6	24					0	0	1	0	0	
OIT3	170392	broad.mit.edu	37	10	74658557	74658557	+	Missense_Mutation	SNP	C	T	T	rs141122150		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:74658557C>T	uc001jte.1	+	2	415	c.197C>T	c.(196-198)GCG>GTG	p.A66V	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	66						nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					ACGGGCATGGCGGGAGATGCC	0.567													21	42					0	0	1	0	0	
AGAP5	729092	broad.mit.edu	37	10	75451802	75451802	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:75451802T>C	uc009xri.2	-	4	436	c.395A>G	c.(394-396)CAT>CGT	p.H132R	AGAP5_uc001juu.3_Missense_Mutation_p.H93R	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	132					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TTTACTTACATGGTTTGTACA	0.299													3	79					0	0	1	0	0	
CAMK2G	818	broad.mit.edu	37	10	75620588	75620588	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:75620588C>T	uc001jvv.1	-	3	320	c.196G>A	c.(196-198)GTG>ATG	p.V66M	CAMK2G_uc001jvm.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvo.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvq.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvr.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvp.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvs.1_Missense_Mutation_p.V74M|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.V74M|CAMK2G_uc010qkv.1_5'UTR	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	74	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					AGGCACTCACCGATGTTTGGA	0.453													8	100					0	0	1	0	0	
VCL	7414	broad.mit.edu	37	10	75843188	75843188	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:75843188T>C	uc001jwd.2	+	8	1033	c.939T>C	c.(937-939)TGT>TGC	p.C313C	VCL_uc009xrr.2_Silent_p.C62C|VCL_uc010qky.1_Silent_p.C220C|VCL_uc001jwe.2_Silent_p.C313C|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	313	1.|N-terminal globular head.|3 X 112 AA tandem repeats.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					GTGAACTCTGTGCAGGCAAAG	0.458													4	80					0	0	1	0	0	
ZMIZ1	57178	broad.mit.edu	37	10	81051995	81051995	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:81051995C>T	uc001kaf.2	+	11	1411	c.839C>T	c.(838-840)GCG>GTG	p.A280V	ZMIZ1_uc001kag.2_Missense_Mutation_p.A156V|ZMIZ1_uc001kah.1_Missense_Mutation_p.A156V	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	280	Ala-rich.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			ACTCAGCCCgcggcagccgct	0.522													5	59					0	0	1	0	0	
ZMIZ1	57178	broad.mit.edu	37	10	81060696	81060696	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:81060696C>T	uc001kaf.2	+	17	2588	c.2016C>T	c.(2014-2016)TGC>TGT	p.C672C	ZMIZ1_uc001kag.2_Silent_p.C548C	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	672					transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			CGGCCTGCTGCTGCGTGAGTG	0.647													3	35					0	0	1	0	0	
CDHR1	92211	broad.mit.edu	37	10	85973974	85973974	+	Missense_Mutation	SNP	G	A	A	rs142917517		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:85973974G>A	uc001kcv.2	+	17	2177	c.2177G>A	c.(2176-2178)CGC>CAC	p.R726H	CDHR1_uc001kcw.2_Intron|CDHR1_uc009xst.2_Missense_Mutation_p.R430H|CDHR1_uc001kcx.2_Missense_Mutation_p.R40H	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	726	Cytoplasmic (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						ACCTTCTGGCGCAACAAGAAG	0.642													27	43					0	0	1	0	0	
PAPSS2	9060	broad.mit.edu	37	10	89487166	89487166	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:89487166G>A	uc001kex.2	+	8	1254	c.991G>A	c.(991-993)GCT>ACT	p.A331T	PAPSS2_uc001kew.2_Missense_Mutation_p.A336T|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	331	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		CTTACGAGACGCTGAATTCTA	0.493													19	35					0	0	1	0	0	
CH25H	9023	broad.mit.edu	37	10	90966256	90966256	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:90966256C>T	uc001kfz.2	-	1	816	c.794G>A	c.(793-795)CGG>CAG	p.R265Q		NM_003956	NP_003947	O95992	CH25H_HUMAN	cholesterol 25-hydroxylase	265					bile acid biosynthetic process|fatty acid biosynthetic process|sterol biosynthetic process	cytosol|endoplasmic reticulum membrane|integral to membrane	cholesterol 25-hydroxylase activity|iron ion binding				0		Colorectal(252;0.0161)		GBM - Glioblastoma multiforme(2;0.000133)		AGATGCAGTCCGCAGCGTTCC	0.557													6	18					0	0	1	0	0	
IFIT5	24138	broad.mit.edu	37	10	91177661	91177661	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:91177661A>G	uc010qnh.1	+	2	936	c.705A>G	c.(703-705)GAA>GAG	p.E235E	IFIT5_uc010qng.1_Silent_p.E187E	NM_012420	NP_036552	Q13325	IFIT5_HUMAN	interferon-induced protein with	235							binding				0						CTGAAGGGGAAAAGTATATTG	0.423													26	52					0	0	1	0	0	
SLC16A12	387700	broad.mit.edu	37	10	91192956	91192956	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:91192956C>A	uc001kgm.2	-	8	1717	c.1326G>T	c.(1324-1326)CAG>CAT	p.Q442H	SLC16A12_uc001kgl.2_Missense_Mutation_p.Q114H	NM_213606	NP_998771	Q6ZSM3	MOT12_HUMAN	solute carrier family 16 (monocarboxylic acid	442	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			skin(1)	1						TGGCAATGAACTGCAACTGGG	0.423													5	122					0.184627	0.185277	1	1	0	
MYOF	26509	broad.mit.edu	37	10	95157162	95157162	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:95157162C>T	uc001kin.2	-	14	1396	c.1273G>A	c.(1273-1275)GTC>ATC	p.V425I	MYOF_uc001kio.2_Missense_Mutation_p.V425I|MYOF_uc001kip.3_Missense_Mutation_p.V425I|MYOF_uc009xuf.2_Missense_Mutation_p.V407I	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	425	Cytoplasmic (Potential).|C2 3.				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						TGAAGATTGACGACCTGATTC	0.294													17	34					0	0	1	0	0	
ALDH18A1	5832	broad.mit.edu	37	10	97402812	97402812	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:97402812G>A	uc001kkz.2	-	3	482	c.240C>T	c.(238-240)GCC>GCT	p.A80A	ALDH18A1_uc001kky.2_Silent_p.A80A|ALDH18A1_uc010qog.1_Intron|ALDH18A1_uc010qoh.1_Intron	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	80	Glutamate 5-kinase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	GGGTCACCACGGCACTGCCGA	0.532													20	37					0	0	1	0	0	
CCNJ	54619	broad.mit.edu	37	10	97817760	97817760	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:97817760C>T	uc001klm.2	+	6	1240	c.881C>T	c.(880-882)ACG>ATG	p.T294M	uc001klg.1_Intron|uc001klj.1_Intron|uc009xvb.1_Intron|CCNJ_uc010qoq.1_Missense_Mutation_p.T305M|CCNJ_uc001kln.2_Missense_Mutation_p.T293M	NM_019084	NP_061957	Q5T5M9	CCNJ_HUMAN	cyclin J isoform 2	294						nucleus				ovary(1)	1				Epithelial(162;6.1e-08)|all cancers(201;2.32e-06)		CGCCATCCTACGTCAGAACAA	0.507													13	200					0	0	1	0	0	
TM9SF3	56889	broad.mit.edu	37	10	98336438	98336438	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:98336438A>C	uc001kmm.3	-	2	468	c.251T>G	c.(250-252)CTT>CGT	p.L84R	TM9SF3_uc010qot.1_Missense_Mutation_p.L84R	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	84						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		AACCCCTTGAAGTGCTTCTCC	0.333													9	143					0	0	1	0	0	
SLIT1	6585	broad.mit.edu	37	10	98766417	98766417	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:98766417A>G	uc001kmw.2	-	32	3654	c.3402T>C	c.(3400-3402)ACT>ACC	p.T1134T		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	1134	EGF-like 6.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TCTGGCACTCAGTCCCCTCAC	0.607													3	21					0	0	1	0	0	
CRTAC1	55118	broad.mit.edu	37	10	99677300	99677300	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:99677300C>T	uc001kou.1	-	5	1028	c.672G>A	c.(670-672)GCG>GCA	p.A224A	CRTAC1_uc001kov.2_Silent_p.A213A|CRTAC1_uc001kot.1_Silent_p.A14A	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	224						proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CATCTCTGAGCGCCAGAATGC	0.577													16	30					0	0	1	0	0	
COX15	1355	broad.mit.edu	37	10	101476115	101476115	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:101476115G>A	uc001kqb.3	-	8	1708	c.1091C>T	c.(1090-1092)GCG>GTG	p.A364V	COX15_uc001kqc.3_Missense_Mutation_p.A364V|COX15_uc010qpj.1_Missense_Mutation_p.A185V	NM_078470	NP_510870	Q7KZN9	COX15_HUMAN	COX15 homolog isoform 1	364	Helical; (Potential).				heme a biosynthetic process|respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;3.08e-10)|all cancers(201;2.43e-08)		CTGTGTATACGCCAAAGCCAG	0.368													6	156					0	0	1	0	0	
ABCC2	1244	broad.mit.edu	37	10	101591751	101591751	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:101591751G>T	uc001kqf.2	+	23	3260	c.3121G>T	c.(3121-3123)GCA>TCA	p.A1041S		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	1041	ABC transmembrane type-1 2.|Helical; Name=13; (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TGTGTTCATAGCACATTTCTG	0.433													18	173					9.57634e-11	1.03371e-10	1	1	0	
FAM178A	55719	broad.mit.edu	37	10	102676365	102676365	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:102676365A>G	uc001krt.3	+	3	765	c.223A>G	c.(223-225)AAA>GAA	p.K75E	FAM178A_uc001krr.1_Missense_Mutation_p.K75E|FAM178A_uc001krs.2_Missense_Mutation_p.K75E|FAM178A_uc001kru.1_Missense_Mutation_p.K11E	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	75											0						ATCAAACATCAAATATGGAGG	0.328													5	53					0	0	1	0	0	
KAZALD1	81621	broad.mit.edu	37	10	102822357	102822357	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:102822357C>T	uc001ksr.2	+	2	933	c.8C>T	c.(7-9)CCG>CTG	p.P3L	KAZALD1_uc001kss.3_RNA|KAZALD1_uc001kst.1_Missense_Mutation_p.P3L	NM_030929	NP_112191	Q96I82	KAZD1_HUMAN	Kazal-type serine peptidase inhibitor domain 1	3					cell differentiation|multicellular organismal development|ossification|regulation of cell growth		insulin-like growth factor binding				0				Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		ACCAtgctgccgccgccgcgg	0.433													4	11					0	0	1	0	0	
CYP17A1	1586	broad.mit.edu	37	10	104592406	104592406	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:104592406T>C	uc001kwg.2	-	6	1173	c.1001A>G	c.(1000-1002)CAG>CGG	p.Q334R		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	334					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	ACCCACATTCTGGTCAATCTC	0.557													14	86					0	0	1	0	0	
COL17A1	1308	broad.mit.edu	37	10	105795035	105795035	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:105795035G>A	uc001kxr.2	-	50	3774	c.3605C>T	c.(3604-3606)TCG>TTG	p.S1202L	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1202	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TAAGTAAGACGAGAGGTCCTC	0.612													6	18					0	0	1	0	0	
CCDC147	159686	broad.mit.edu	37	10	106166475	106166475	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:106166475T>C	uc001kyh.2	+	15	2314	c.2180T>C	c.(2179-2181)ATA>ACA	p.I727T		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	727	Potential.									ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		TATGAGCTGATACAGAAAATT	0.463													9	164					0	0	1	0	0	
XPNPEP1	7511	broad.mit.edu	37	10	111624956	111624956	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:111624956A>T	uc001kyp.1	-	21	1998	c.1858T>A	c.(1858-1860)TCC>ACC	p.S620T	XPNPEP1_uc009xxt.1_Missense_Mutation_p.S639T|XPNPEP1_uc001kyq.1_Missense_Mutation_p.S549T	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	620					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		TGCTGTTTGGAGATGGGTTGC	0.488													10	90					0	0	1	0	0	
SMC3	9126	broad.mit.edu	37	10	112361628	112361628	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:112361628C>T	uc001kze.2	+	24	3004	c.2878C>T	c.(2878-2880)CTG>TTG	p.L960L		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	960	Potential.				cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		GTACCAGACACTGAGCCTCAA	0.328													6	102					0	0	1	0	0	
PNLIPRP3	119548	broad.mit.edu	37	10	118196325	118196325	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:118196325A>C	uc001lcl.3	+	2	253	c.152A>C	c.(151-153)AAG>ACG	p.K51T		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	51					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		TCTCCAGAGAAGATAAACACT	0.403													14	111					0	0	1	0	0	
EMX2	2018	broad.mit.edu	37	10	119303110	119303110	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:119303110C>A	uc001ldh.3	+	1	1155	c.332C>A	c.(331-333)TCG>TAG	p.S111*	EMX2OS_uc001ldf.2_5'Flank|EMX2OS_uc001ldg.2_Intron|EMX2_uc001ldi.3_Nonsense_Mutation_p.S111*	NM_004098	NP_004089	Q04743	EMX2_HUMAN	empty spiracles homeobox 2 isoform 1	111						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.109)|Lung NSC(174;0.179)|all_lung(145;0.22)		all cancers(201;0.0133)		CTATTCGCCTCGCAGCAGCGG	0.697													10	175					5.50884e-06	5.78597e-06	1	1	0	
CPXM2	119587	broad.mit.edu	37	10	125516743	125516743	+	Missense_Mutation	SNP	C	T	T	rs78179127	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:125516743C>T	uc001lhk.1	-	12	2228	c.1903G>A	c.(1903-1905)GTG>ATG	p.V635M	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	635					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TCCATGAACACGATCAGAGAT	0.537													42	116					0	0	1	0	0	
LHPP	64077	broad.mit.edu	37	10	126186604	126186604	+	Splice_Site	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:126186604G>T	uc001lhs.1	+	5	552	c.532_splice	c.e5-1	p.Y178_splice	LHPP_uc001lht.1_Splice_Site_p.Y178_splice|LHPP_uc009yai.1_Intron	NM_022126	NP_071409	Q9H008	LHPP_HUMAN	phospholysine phosphohistidine inorganic						protein dephosphorylation	cytosol|nucleus	inorganic diphosphatase activity|magnesium ion binding|phosphohistidine phosphatase activity|protein homodimerization activity				0		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.163)|Colorectal(40;0.187)		TCTTTTCCCAGTATGCCTGTG	0.537													15	32					1.15919e-05	1.21526e-05	1	1	0	
MMP21	118856	broad.mit.edu	37	10	127462511	127462511	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:127462511G>A	uc001liu.2	-	2	586	c.586C>T	c.(586-588)CGC>TGC	p.R196C		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	196					proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GCCACAATGCGCCGCTGGTCG	0.721													7	17					0	0	1	0	0	
ADAM12	8038	broad.mit.edu	37	10	128076637	128076637	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:128076637G>A	uc001ljk.2	-	1	491	c.78C>T	c.(76-78)TGC>TGT	p.C26C	ADAM12_uc010qul.1_Silent_p.C26C|ADAM12_uc001ljm.2_Silent_p.C26C|ADAM12_uc001ljn.2_Silent_p.C26C|ADAM12_uc001ljl.3_Silent_p.C26C	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	26					cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		CTCGGGCCTCGCAGGGCGCGA	0.786													8	15					0	0	1	0	0	
DOCK1	1793	broad.mit.edu	37	10	129245732	129245732	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:129245732G>A	uc001ljt.2	+	51	5489	c.5425G>A	c.(5425-5427)GCA>ACA	p.A1809T	DOCK1_uc010qun.1_Missense_Mutation_p.A1830T|DOCK1_uc009yaq.2_Missense_Mutation_p.G808D|DOCK1_uc001ljw.1_5'Flank	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1809	Interaction with NCK2 second and third SH3 domain (minor).				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		AGGCAGCGTGGCAGATTACGG	0.567													6	23					0	0	1	0	0	
PWWP2B	170394	broad.mit.edu	37	10	134219544	134219544	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:134219544G>A	uc001lll.3	+	2	1569	c.1540G>A	c.(1540-1542)GGC>AGC	p.G514S	PWWP2B_uc009ybe.2_Intron	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	514	PWWP.										0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		CATCAGTCTCGGCCAGAAGGA	0.567													20	52					0	0	1	0	0	
KNDC1	85442	broad.mit.edu	37	10	135015215	135015215	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:135015215C>T	uc001llz.1	+	17	3201	c.3200C>T	c.(3199-3201)ACC>ATC	p.T1067I	KNDC1_uc001lma.1_Missense_Mutation_p.T1002I|KNDC1_uc001lmb.1_Missense_Mutation_p.T479I	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1067					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GAGGCAGTGACCCGACTGGCC	0.692													3	13					0	0	1	0	0	
MUC6	4588	broad.mit.edu	37	11	1026404	1026404	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:1026404G>A	uc001lsw.2	-	20	2520	c.2469C>T	c.(2467-2469)CCC>CCT	p.P823P		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	823					maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACTCCTCGGGGGGCACACACT	0.642													7	29					0	0	1	0	0	
MUC2	4583	broad.mit.edu	37	11	1095795	1095795	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:1095795C>T	uc001lsx.1	+	36	13419	c.13392C>T	c.(13390-13392)CGC>CGT	p.R4464R		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4464						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	AACCCGTGCGCGTCGAGGACC	0.687													9	14					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1265003	1265003	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:1265003C>A	uc009ycr.1	+	48	8933	c.8807C>A	c.(8806-8808)CCC>CAC	p.P2936H	MUC5B_uc001ltb.2_Missense_Mutation_p.P2301H	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2298	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCCTGCTGCCCAGCAGCCCC	0.687													11	117					0.000978159	0.00100216	1	1	0	
MUC5B	727897	broad.mit.edu	37	11	1267404	1267404	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:1267404C>A	uc009ycr.1	+	49	11169	c.11043C>A	c.(11041-11043)TCC>TCA	p.S3681S	MUC5B_uc001ltb.2_Silent_p.S3101S	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3098	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACCCCTCCTCCACTCCGGAGA	0.637													24	72					1.04121e-07	1.10649e-07	1	1	0	
MUC5B	727897	broad.mit.edu	37	11	1275943	1275943	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:1275943C>T	uc009ycr.1	+	57	16634	c.16508C>T	c.(16507-16509)CCG>CTG	p.P5503L	MUC5B_uc001ltb.2_Missense_Mutation_p.P5169L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5166	VWFD 4.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GACCAAATTCCGGTGAGCAGC	0.622													7	26					0	0	1	0	0	
STIM1	6786	broad.mit.edu	37	11	4045107	4045107	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:4045107T>C	uc001lyv.2	+	3	843	c.275T>C	c.(274-276)CTG>CCG	p.L92P	STIM1_uc009yef.2_Missense_Mutation_p.L92P	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	92	EF-hand.|Extracellular (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		TTGCAGTTCCTGAGGGAAGAC	0.507													7	44					0	0	1	0	0	
OR52R1	119695	broad.mit.edu	37	11	4825255	4825255	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:4825255A>G	uc010qym.1	-	1	593	c.593T>C	c.(592-594)ATG>ACG	p.M198T		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCATAGCCATGAGCACCCC	0.532													16	98					0	0	1	0	0	
OR51S1	119692	broad.mit.edu	37	11	4870019	4870019	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:4870019G>C	uc010qyo.1	-	1	420	c.420C>G	c.(418-420)TAC>TAG	p.Y140*		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	140	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGAGCGCTGGGTAGTGGAGAG	0.522													9	92					0	0	1	0	0	
OR51I1	390063	broad.mit.edu	37	11	5462646	5462646	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:5462646G>T	uc010qze.1	-	1	99	c.99C>A	c.(97-99)TTC>TTA	p.F33L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAGGATGCAGAAAATCAGGG	0.527													23	79					1.22574e-08	1.30908e-08	1	1	0	
OR56A5	390084	broad.mit.edu	37	11	5989588	5989588	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:5989588G>A	uc010qzu.1	-	1	137	c.137C>T	c.(136-138)GCC>GTC	p.A46V		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	46	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						CAGAAGGGTGGCATTGGCCCC	0.572													8	27					0	0	1	0	0	
NLRP14	338323	broad.mit.edu	37	11	7065123	7065123	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:7065123T>C	uc001mfb.1	+	4	2189	c.1866T>C	c.(1864-1866)CTT>CTC	p.L622L		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	622					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		CTTTCTGCCTTAAGCACTGCC	0.398													9	100					0	0	1	0	0	
PPFIBP2	8495	broad.mit.edu	37	11	7586879	7586879	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:7586879A>G	uc001mfj.3	+	3	548	c.160A>G	c.(160-162)ATC>GTC	p.I54V		NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	54					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GCTCCATCTCATCGAGGACTT	0.572													25	107					0	0	1	0	0	
EIF4G2	1982	broad.mit.edu	37	11	10824639	10824639	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:10824639G>A	uc001mjc.2	-	11	1351	c.934C>T	c.(934-936)CGC>TGC	p.R312C	EIF4G2_uc001mjb.2_Missense_Mutation_p.R106C|EIF4G2_uc009ygf.2_Missense_Mutation_p.R106C|EIF4G2_uc001mjd.2_Missense_Mutation_p.R312C|EIF4G2_uc001mjf.1_Missense_Mutation_p.R106C|SNORD97_uc009yge.2_5'Flank	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	312					cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		AAAGCCTTGCGAGGAACCCAA	0.338													10	50					0	0	1	0	0	
SPON1	10418	broad.mit.edu	37	11	14063134	14063134	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:14063134C>T	uc001mle.2	+	3	950	c.412C>T	c.(412-414)CGG>TGG	p.R138W		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	138	Reelin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		AAGCACTCCACGGAGGAGGAC	0.468													38	103					0	0	1	0	0	
MRGPRX4	117196	broad.mit.edu	37	11	18195721	18195721	+	Silent	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:18195721G>C	uc001mnv.1	+	1	1338	c.918G>C	c.(916-918)GGG>GGC	p.G306G		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	306	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						AAGGTGAAGGGCAGCTTCCTG	0.567													12	34					0	0	1	0	0	
IGSF22	283284	broad.mit.edu	37	11	18743459	18743459	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:18743459T>C	uc009yht.2	-	3	429	c.239A>G	c.(238-240)GAG>GGG	p.E80G	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	80	Ig-like 1.									ovary(4)|large_intestine(2)|kidney(1)	7						CAACACACCCTCGGGCGCGGT	0.607											OREG0020822	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	97					0	0	1	0	0	
MRGPRX2	117194	broad.mit.edu	37	11	19077849	19077849	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:19077849A>G	uc001mph.2	-	2	189	c.101T>C	c.(100-102)GTC>GCC	p.V34A		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	34	Helical; Name=1; (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						GATCAGGAAGACCGGGATCAG	0.557													19	198					0	0	1	0	0	
SLC17A6	57084	broad.mit.edu	37	11	22364897	22364897	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:22364897G>A	uc001mqk.2	+	3	857	c.444G>A	c.(442-444)CGG>CGA	p.R148R		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	148	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TCGCGTCTCGGCTGGCAGCCA	0.597													5	52					0	0	1	0	0	
PAX6	5080	broad.mit.edu	37	11	31823241	31823241	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:31823241T>C	uc001mtd.3	-	5	1115	c.225A>G	c.(223-225)AAA>AAG	p.K75K	PAX6_uc001mte.3_Silent_p.K75K|PAX6_uc001mtg.3_Silent_p.K89K|PAX6_uc001mtf.3_Silent_p.K75K|PAX6_uc001mth.3_Silent_p.K75K|PAX6_uc009yjr.2_Silent_p.K75K	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	75	Paired.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					CTACTCTCGGTTTACTACCAC	0.512									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				9	68					0	0	1	0	0	
CSTF3	1479	broad.mit.edu	37	11	33124659	33124659	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:33124659T>C	uc001muh.2	-	9	823	c.657A>G	c.(655-657)GTA>GTG	p.V219V	TCP11L1_uc001muf.1_Intron	NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1	219					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						ATACCTTTGCTACACGTCTAG	0.299													7	83					0	0	1	0	0	
RAG1	5896	broad.mit.edu	37	11	36595836	36595836	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:36595836T>C	uc001mwu.3	+	2	1106	c.982T>C	c.(982-984)TGT>CGT	p.C328R	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	328	RING-type.	Zinc 3 (By similarity).	C -> Y (in OS).		histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GGGCAGCTATTGTCCCTCTTG	0.498									Familial_Hemophagocytic_Lymphohistiocytosis				8	68					0	0	1	0	0	
PEX16	9409	broad.mit.edu	37	11	45936234	45936234	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:45936234A>G	uc001nbu.2	-	6	774	c.462T>C	c.(460-462)GAT>GAC	p.D154D	PEX16_uc001nbt.2_Silent_p.D154D	NM_004813	NP_004804	Q9Y5Y5	PEX16_HUMAN	peroxisomal biogenesis factor 16 isoform 1	154	Cytoplasmic (Potential).				ER-dependent peroxisome organization|peroxisome membrane biogenesis|protein import into peroxisome matrix|protein import into peroxisome membrane	endoplasmic reticulum membrane|integral to peroxisomal membrane	protein C-terminus binding			ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.223)		TGTGGTCACCATCTAGCAGGG	0.572													23	81					0	0	1	0	0	
CHRM4	1132	broad.mit.edu	37	11	46407805	46407805	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:46407805G>A	uc001nct.1	-	1	303	c.303C>T	c.(301-303)GGC>GGT	p.G101G		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	101	Extracellular (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	AGACCACGGCGCCCAGGGGCC	0.572													14	24					0	0	1	0	0	
ARHGAP1	392	broad.mit.edu	37	11	46701278	46701278	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:46701278A>T	uc001ndd.2	-	11	1016	c.947T>A	c.(946-948)GTC>GAC	p.V316D		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	316	Rho-GAP.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		CTTGAGGATGACTGCTGGCAG	0.612													10	78					0	0	1	0	0	
LOC440040	440040	broad.mit.edu	37	11	49598008	49598008	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:49598008G>A	uc010rhy.1	+	2	599	c.121G>A	c.(121-123)GCC>ACC	p.A41T	LOC440040_uc009ymb.2_Missense_Mutation_p.A41T	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GAGAGTGGAGGCCATGCTGCA	0.522													13	24					0	0	1	0	0	
OR4A5	81318	broad.mit.edu	37	11	51412264	51412264	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:51412264C>A	uc001nhi.1	-	1	132	c.132G>T	c.(130-132)GTG>GTT	p.V44V		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TAATATCCACCACAATGAGCA	0.453													13	40					0.000308642	0.00031831	1	1	0	
OR4C15	81309	broad.mit.edu	37	11	55322033	55322033	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:55322033T>C	uc010rig.1	+	1	251	c.251T>C	c.(250-252)TTG>TCG	p.L84S		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTTGTATTTTTGTTTGTCTAC	0.418										HNSCC(20;0.049)			16	143					0	0	1	0	0	
OR5J2	282775	broad.mit.edu	37	11	55944831	55944831	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:55944831T>C	uc010rjb.1	+	1	738	c.738T>C	c.(736-738)ACT>ACC	p.T246T		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					CTCACCTGACTGCTGTGACCA	0.448													4	111					0	0	1	0	0	
OR5J2	282775	broad.mit.edu	37	11	55944903	55944903	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:55944903A>G	uc010rjb.1	+	1	810	c.810A>G	c.(808-810)CAA>CAG	p.Q270Q		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					TTGTGGAACAAGAGAAAGTGG	0.438													8	49					0	0	1	0	0	
OR5J2	282775	broad.mit.edu	37	11	55944935	55944935	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:55944935G>T	uc010rjb.1	+	1	842	c.842G>T	c.(841-843)GGG>GTG	p.G281V		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					TATACGCTAGGGATTCCCATG	0.388													4	31					1.61879e-10	1.743e-10	1	1	0	
OR5AR1	219493	broad.mit.edu	37	11	56431414	56431414	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:56431414T>C	uc010rjm.1	+	1	253	c.253T>C	c.(253-255)TTC>CTC	p.F85L		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTGGCTGACTTCCTAACAAA	0.488													26	196					0	0	1	0	0	
TMX2	51075	broad.mit.edu	37	11	57506647	57506647	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:57506647T>C	uc001nlc.1	+	7	708	c.659T>C	c.(658-660)CTG>CCG	p.L220P	CTNND1_uc001nlf.1_Intron|TMX2_uc001nld.1_Missense_Mutation_p.L126P|TMX2_uc001nle.1_Missense_Mutation_p.L182P|C11orf31_uc010rjx.1_5'Flank	NM_015959	NP_057043	Q9Y320	TMX2_HUMAN	thioredoxin domain containing 14 isoform 1	220	Cytoplasmic (Potential).|Thioredoxin.				cell redox homeostasis	integral to membrane					0						CTCCCTACCCTGATCCTGTTC	0.512													61	118					0	0	1	0	0	
AHNAK	79026	broad.mit.edu	37	11	62295967	62295967	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:62295967C>T	uc001ntl.2	-	5	6222	c.5922G>A	c.(5920-5922)GGG>GGA	p.G1974G	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1974					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TAAACTTGGGCCCTTTCAACT	0.507													9	309					0	0	1	0	0	
TAF6L	10629	broad.mit.edu	37	11	62543364	62543364	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:62543364G>A	uc001nvc.2	+	2	210	c.109G>A	c.(109-111)GCA>ACA	p.A37T	TAF6L_uc010rmg.1_Missense_Mutation_p.A37T|TAF6L_uc009yof.2_Missense_Mutation_p.A37T	NM_006473	NP_006464	Q9Y6J9	TAF6L_HUMAN	TAF6-like RNA polymerase II	37					chromatin remodeling|histone H3 acetylation|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	histone deacetylase complex|STAGA complex	DNA binding|protein binding|transcription coactivator activity			ovary(3)	3						GGCGCTGCTCGCAGAGGACGT	0.607													13	34					0	0	1	0	0	
TAF6L	10629	broad.mit.edu	37	11	62554095	62554095	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:62554095G>T	uc001nvc.2	+	11	1297	c.1196G>T	c.(1195-1197)AGC>ATC	p.S399I	TMEM179B_uc001nvd.3_5'Flank	NM_006473	NP_006464	Q9Y6J9	TAF6L_HUMAN	TAF6-like RNA polymerase II	399					chromatin remodeling|histone H3 acetylation|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	histone deacetylase complex|STAGA complex	DNA binding|protein binding|transcription coactivator activity			ovary(3)	3						CCATGGGACAGCCTTCTCTTT	0.697											OREG0021030	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	20					1.06961e-07	1.13526e-07	1	1	0	
NXF1	10482	broad.mit.edu	37	11	62569260	62569260	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:62569260G>A	uc001nvf.1	-	6	726	c.590C>T	c.(589-591)CCC>CTC	p.P197L	NXF1_uc001nvg.1_Missense_Mutation_p.P197L|NXF1_uc009yog.1_Missense_Mutation_p.P240L|NXF1_uc010rmh.1_Missense_Mutation_p.P60L	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	197	Interaction with THOC4.|RRM.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						TATAGTGTGGGGTGGAGCAGA	0.468													4	138					0	0	1	0	0	
SLC22A25	387601	broad.mit.edu	37	11	62984953	62984953	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:62984953A>G	uc001nwr.1	-	4	663	c.663T>C	c.(661-663)ATT>ATC	p.I221I	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_Intron|SLC22A25_uc001nwt.1_Silent_p.I221I	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	221	Helical; Name=4; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TCCACTCTACAACTGAAAGAA	0.398													8	44					0	0	1	0	0	
GPR137	56834	broad.mit.edu	37	11	64054186	64054186	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:64054186G>A	uc001nzg.1	+	2	498	c.190G>A	c.(190-192)GCC>ACC	p.A64T	BAD_uc001nzd.2_5'Flank|BAD_uc001nzc.2_5'Flank|GPR137_uc009ypj.1_Missense_Mutation_p.A70T|BAD_uc009ypk.2_5'Flank|GPR137_uc010rni.1_Missense_Mutation_p.A122T|GPR137_uc001nze.1_Missense_Mutation_p.A64T|GPR137_uc001nzf.2_Missense_Mutation_p.A64T|GPR137_uc001nzh.1_Missense_Mutation_p.A64T|GPR137_uc001nzi.2_Missense_Mutation_p.A64T|GPR137_uc010rnj.1_Missense_Mutation_p.A64T	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	64	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						GGTGTTCCTGGCCCTCTGTCT	0.612													53	133					0	0	1	0	0	
MRPL49	740	broad.mit.edu	37	11	64893062	64893062	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:64893062G>A	uc001oda.1	+	3	423	c.332G>A	c.(331-333)CGG>CAG	p.R111Q	MRPL49_uc001ocz.1_RNA	NM_004927	NP_004918	Q13405	RM49_HUMAN	mitochondrial ribosomal protein L49	111					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						ACTGTGATCCGGAAAGTGGAA	0.572													20	63					0	0	1	0	0	
CAPN1	823	broad.mit.edu	37	11	64972290	64972290	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:64972290C>T	uc009yqd.1	+	11	1413	c.1302C>T	c.(1300-1302)TTC>TTT	p.F434F	CAPN1_uc001odf.1_Silent_p.F434F|CAPN1_uc001odg.1_Silent_p.F434F|CAPN1_uc010roa.1_Silent_p.F175F	NM_005186	NP_005177	P07384	CAN1_HUMAN	calpain 1, large subunit	434	Domain III.				positive regulation of cell proliferation|proteolysis	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Lung NSC(402;0.094)|Melanoma(852;0.16)		Lung(977;0.00168)|LUSC - Lung squamous cell carcinoma(976;0.00813)		AGCGCCGCTTCGGCCGCGACA	0.657											OREG0021073	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	31					0	0	1	0	0	
MAP3K11	4296	broad.mit.edu	37	11	65367065	65367065	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:65367065C>T	uc001oew.2	-	9	2499	c.2006G>A	c.(2005-2007)CGC>CAC	p.R669H	MAP3K11_uc001oev.2_Missense_Mutation_p.R85H|MAP3K11_uc010rol.1_Missense_Mutation_p.R412H|MAP3K11_uc001oex.1_Missense_Mutation_p.R176H	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	669	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CCCGCGCTCGCGTCCTGGGCC	0.761													11	30					0	0	1	0	0	
DKFZp761E198	91056	broad.mit.edu	37	11	65545802	65545802	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:65545802G>A	uc001ofo.3	-	1	2021	c.1991C>T	c.(1990-1992)GCC>GTC	p.A664V		NM_138368	NP_612377	Q2VPB7	YK046_HUMAN	hypothetical protein LOC91056	664							protein binding				0				READ - Rectum adenocarcinoma(159;0.167)		CAGAGGGCGGGCAGGGCGGCC	0.662													6	16					0	0	1	0	0	
DKFZp761E198	91056	broad.mit.edu	37	11	65546165	65546165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:65546165G>A	uc001ofo.3	-	1	1658	c.1628C>T	c.(1627-1629)GCC>GTC	p.A543V		NM_138368	NP_612377	Q2VPB7	YK046_HUMAN	hypothetical protein LOC91056	543							protein binding				0				READ - Rectum adenocarcinoma(159;0.167)		CAGCTGCCTGGCCAGCACCTG	0.706													4	7					0	0	1	0	0	
CTSW	1521	broad.mit.edu	37	11	65650135	65650135	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:65650135C>T	uc001ogc.1	+	6	636	c.594C>T	c.(592-594)GAC>GAT	p.D198D	CTSW_uc001ogb.1_Silent_p.D198D	NM_001335	NP_001326	P56202	CATW_HUMAN	cathepsin W preproprotein	198					immune response|proteolysis		cysteine-type endopeptidase activity			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.168)		TCGTCTGGGACGCGTTCATAA	0.632													19	54					0	0	1	0	0	
KLC2	64837	broad.mit.edu	37	11	66033912	66033912	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:66033912G>A	uc010rov.1	+	15	1979	c.1736G>A	c.(1735-1737)CGG>CAG	p.R579Q	KLC2_uc010row.1_Missense_Mutation_p.R579Q|KLC2_uc009yra.2_Intron|KLC2_uc001ohb.2_Missense_Mutation_p.R579Q|KLC2_uc010rox.1_Missense_Mutation_p.R502Q|KLC2_uc001ohc.2_Missense_Mutation_p.R579Q|KLC2_uc001ohd.2_Missense_Mutation_p.R502Q|KLC2_uc001ohe.1_Missense_Mutation_p.R440Q|RAB1B_uc001ohf.2_5'Flank	NM_001134775	NP_001128247	Q9H0B6	KLC2_HUMAN	kinesin light chain 2 isoform 1	579					blood coagulation	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0						AGGATGAAGCGGGCCAGTTCC	0.642													20	49					0	0	1	0	0	
SLC29A2	3177	broad.mit.edu	37	11	66130984	66130984	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:66130984C>T	uc001oht.2	-	12	1523	c.1294G>A	c.(1294-1296)GCC>ACC	p.A432T	SLC29A2_uc001ohs.2_Missense_Mutation_p.A312T|SLC29A2_uc010rpb.1_RNA|SLC29A2_uc009yrf.2_Missense_Mutation_p.A312T|SLC29A2_uc001ohu.2_Missense_Mutation_p.A432T|SLC29A2_uc001ohv.2_3'UTR	NM_001532	NP_001523	Q14542	S29A2_HUMAN	solute carrier family 29 (nucleoside	432	Helical; (Potential).				cell proliferation|nucleobase, nucleoside and nucleotide metabolic process	basolateral plasma membrane|integral to plasma membrane|nuclear membrane|nucleolus	nucleoside transmembrane transporter activity			ovary(1)	1						GTCATGAGGGCGCCGGCCACC	0.607													5	16					0	0	1	0	0	
C11orf80	79703	broad.mit.edu	37	11	66610523	66610523	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:66610523C>A	uc001ojf.2	+	16	1958	c.1951C>A	c.(1951-1953)CTC>ATC	p.L651I	C11orf80_uc001ojg.2_Missense_Mutation_p.L418I|C11orf80_uc001ojh.2_Missense_Mutation_p.L419I|C11orf80_uc001oji.2_Missense_Mutation_p.L419I|C11orf80_uc010rpl.1_Missense_Mutation_p.L285I|C11orf80_uc001ojj.2_Missense_Mutation_p.L249I|RCE1_uc001ojk.1_5'Flank|RCE1_uc001ojl.1_5'Flank	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	496											0						CAGGGCGAGCCTCGGAAGCCG	0.766													3	6					0.00909568	0.00923047	1	1	0	
NDUFV1	4723	broad.mit.edu	37	11	67377024	67377024	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:67377024T>G	uc001omj.2	+	4	581	c.428T>G	c.(427-429)CTG>CGG	p.L143R	NDUFV1_uc010rpv.1_Missense_Mutation_p.L42R|NDUFV1_uc001oml.2_Missense_Mutation_p.L136R|NDUFV1_uc001omk.3_Missense_Mutation_p.L134R|NDUFV1_uc009yrz.1_Missense_Mutation_p.L42R|NDUFV1_uc010rpw.1_5'Flank	NM_007103	NP_009034	P49821	NDUV1_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 1	143					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|FMN binding|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	GAAGGCTGCCTGGTGGGGGGC	0.617													18	161					0	0	1	0	0	
SUV420H1	51111	broad.mit.edu	37	11	67941281	67941281	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:67941281T>C	uc001onm.1	-	6	899	c.643A>G	c.(643-645)ACA>GCA	p.T215A	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_Missense_Mutation_p.T43A|SUV420H1_uc009ysf.2_5'UTR|SUV420H1_uc001ono.1_Missense_Mutation_p.T215A|SUV420H1_uc001onp.2_Missense_Mutation_p.T215A|SUV420H1_uc010rqa.1_Missense_Mutation_p.T192A|SUV420H1_uc001onq.2_Missense_Mutation_p.T215A	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	215	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CACTCTTTTGTTGCAACTATT	0.303													11	80					0	0	1	0	0	
CPT1A	1374	broad.mit.edu	37	11	68530165	68530165	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:68530165G>A	uc001oog.3	-	15	1975	c.1805C>T	c.(1804-1806)ACG>ATG	p.T602M	CPT1A_uc001oof.3_Missense_Mutation_p.T602M|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	602	Cytoplasmic (Potential).	Carnitine (By similarity).			carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	CACGGTCTCCGTCCTCCCCTC	0.617													10	59					0	0	1	0	0	
CTTN	2017	broad.mit.edu	37	11	70261793	70261793	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:70261793G>A	uc001opv.3	+	7	633	c.427G>A	c.(427-429)GGG>AGG	p.G143R	CTTN_uc001opu.2_Missense_Mutation_p.G143R|CTTN_uc001opw.3_Missense_Mutation_p.G143R	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	143	Cortactin 2.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		TGAATACCAGGGGAAGACTGA	0.512													19	193					0	0	1	0	0	
INPPL1	3636	broad.mit.edu	37	11	71939260	71939260	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:71939260G>A	uc001osf.2	+	2	356	c.209G>A	c.(208-210)CGC>CAC	p.R70H	INPPL1_uc001osg.2_5'UTR	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	70	SH2.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CACACGTATCGCATTCTGCCT	0.587													6	73					0	0	1	0	0	
ARHGEF17	9828	broad.mit.edu	37	11	73071483	73071483	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:73071483G>A	uc001otu.2	+	11	4346	c.4325G>A	c.(4324-4326)CGG>CAG	p.R1442Q		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1442					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TGCGCCACTCGGCCCGAGGGC	0.622													11	147					0	0	1	0	0	
ARHGEF17	9828	broad.mit.edu	37	11	73071553	73071553	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:73071553C>A	uc001otu.2	+	11	4416	c.4395C>A	c.(4393-4395)GCC>GCA	p.A1465A		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1465					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TTGAACAGGCCTTCGATGAGG	0.602													15	84					2.4624e-09	2.63476e-09	1	1	0	
MAP6	4135	broad.mit.edu	37	11	75298476	75298476	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:75298476A>G	uc001owu.2	-	4	2135	c.2070T>C	c.(2068-2070)CAT>CAC	p.H690H		NM_033063	NP_149052	Q96JE9	MAP6_HUMAN	microtubule-associated protein 6 isoform 1	690	Pro-rich.					Golgi apparatus|microtubule|perinuclear region of cytoplasm	calmodulin binding				0	Ovarian(111;0.11)					GAACCTTTGCATGCTCTGGGA	0.483													29	65					0	0	1	0	0	
CCDC83	220047	broad.mit.edu	37	11	85593593	85593593	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:85593593G>A	uc001pbh.1	+	4	730	c.218G>A	c.(217-219)CGG>CAG	p.R73Q	CCDC83_uc001pbg.1_Missense_Mutation_p.R73Q|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.R30Q	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	73	Potential.									skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TGGCACATACGGCATCTACTA	0.383													25	67					0	0	1	0	0	
MTNR1B	4544	broad.mit.edu	37	11	92702976	92702976	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:92702976C>T	uc001pdk.1	+	1	188	c.85C>T	c.(85-87)CGG>TGG	p.R29W		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	29	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	TGGCAGCGCGCGGCCCTCCAG	0.721													5	13					0	0	1	0	0	
MMP12	4321	broad.mit.edu	37	11	102742539	102742539	+	Missense_Mutation	SNP	C	T	T	rs61730845	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:102742539C>T	uc001phk.2	-	3	539	c.494G>A	c.(493-495)CGT>CAT	p.R165H		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	165					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	CCTACCTCCACGGGCAAAAAC	0.408													15	31					0	0	1	0	0	
CWF19L2	143884	broad.mit.edu	37	11	107219755	107219755	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:107219755G>A	uc010rvp.1	-	14	2140	c.2110C>T	c.(2110-2112)CGG>TGG	p.R704W	CWF19L2_uc001pjh.3_RNA|CWF19L2_uc009yxo.2_RNA	NM_152434	NP_689647	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control	704							catalytic activity				0		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		GTAAGAGACCGTACGTTGGGT	0.368													17	47					0	0	1	0	0	
CUL5	8065	broad.mit.edu	37	11	107959318	107959318	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:107959318T>C	uc001pjv.2	+	12	1910	c.1243T>C	c.(1243-1245)TTG>CTG	p.L415L	CUL5_uc001pju.2_RNA	NM_003478	NP_003469	Q93034	CUL5_HUMAN	Vasopressin-activated calcium-mobilizing	415					cell cycle arrest|cell proliferation|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process|viral reproduction	cullin-RING ubiquitin ligase complex|cytosol	calcium channel activity|receptor activity|ubiquitin protein ligase binding			ovary(1)	1		all_cancers(61;7.09e-10)|all_epithelial(67;2.97e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|Melanoma(852;4.48e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;3.58e-05)|Epithelial(105;4.68e-05)|all cancers(92;0.00122)|OV - Ovarian serous cystadenocarcinoma(223;0.217)		CTGTGACATGTTGCTAAGAAA	0.333													8	68					0	0	1	0	0	
ATM	472	broad.mit.edu	37	11	108201105	108201105	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:108201105G>T	uc001pkb.1	+	50	7857	c.7472G>T	c.(7471-7473)TGG>TTG	p.W2491L	ATM_uc009yxr.1_Missense_Mutation_p.W2491L|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Missense_Mutation_p.W1143L|ATM_uc001pkg.1_Missense_Mutation_p.W848L	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2491	FAT.		W -> R (in AT).		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TGTTCCCTCTGGCTTGAAAAT	0.363			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			39	128					1.59911e-31	1.76853e-31	1	1	0	
C11orf52	91894	broad.mit.edu	37	11	111796804	111796804	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:111796804A>C	uc001pmh.2	+	5	736	c.253A>C	c.(253-255)AGC>CGC	p.S85R	C11orf52_uc001pmi.2_Missense_Mutation_p.S85R	NM_080659	NP_542390	Q96A22	CK052_HUMAN	hypothetical protein LOC91894	85										ovary(1)	1		all_cancers(61;8.8e-15)|all_epithelial(67;6.27e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;3.63e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|all cancers(92;6.7e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0512)		TCAAGTGTGCAGCCGTCCCCA	0.527													8	31					0	0	1	0	0	
DIXDC1	85458	broad.mit.edu	37	11	111866190	111866190	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:111866190G>A	uc001pml.2	+	17	1888	c.1591G>A	c.(1591-1593)GAT>AAT	p.D531N	DIXDC1_uc001pmm.2_Missense_Mutation_p.D320N|DIXDC1_uc001pmn.2_Missense_Mutation_p.D237N|DIXDC1_uc010rwq.1_Missense_Mutation_p.D196N	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	531					multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		CAGTGGCCACGATCCTCAGCA	0.542													19	41					0	0	1	0	0	
ZW10	9183	broad.mit.edu	37	11	113639659	113639659	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:113639659A>G	uc001poe.2	-	2	173	c.136T>C	c.(136-138)TAC>CAC	p.Y46H	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	46	Interaction with RINT1.|Interaction with ZWINT.|Potential.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		AATTCACTGTACTTCTTGCTA	0.393													11	141					0	0	1	0	0	
UBE4A	9354	broad.mit.edu	37	11	118252213	118252213	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:118252213A>G	uc001psw.2	+	12	2113	c.1984A>G	c.(1984-1986)ACC>GCC	p.T662A	UBE4A_uc001psv.2_Missense_Mutation_p.T669A	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	662					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		TCACTTTATCACCATTTTCAC	0.418													10	127					0	0	1	0	0	
PHLDB1	23187	broad.mit.edu	37	11	118516165	118516165	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:118516165C>T	uc001ptr.1	+	17	3566	c.3213C>T	c.(3211-3213)CAC>CAT	p.H1071H	PHLDB1_uc001pts.2_Silent_p.H1071H|PHLDB1_uc001ptt.2_Silent_p.H1024H|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Silent_p.H886H|PHLDB1_uc001ptw.1_Silent_p.H426H|PHLDB1_uc009zai.1_Silent_p.H107H|PHLDB1_uc001ptx.1_Silent_p.H107H|PHLDB1_uc010ryi.1_Silent_p.H214H	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1071											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		ATGCCCTTCACGGGGCAGCAC	0.657													30	70					0	0	1	0	0	
FOXR1	283150	broad.mit.edu	37	11	118849724	118849724	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:118849724C>T	uc001pui.2	+	3	419	c.194C>T	c.(193-195)CCT>CTT	p.P65L	FOXR1_uc001puj.2_RNA|FOXR1_uc001puk.2_5'UTR	NM_181721	NP_859072	Q6PIV2	FOXR1_HUMAN	forkhead box R1	65					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.62e-05)		GTGTATCCCCCTGGAAAGCTG	0.547													26	190					0	0	1	0	0	
HMBS	3145	broad.mit.edu	37	11	118963703	118963703	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:118963703T>C	uc001puz.1	+	13	1041	c.884T>C	c.(883-885)ATG>ACG	p.M295T	HMBS_uc001pvc.1_Missense_Mutation_p.M240T|HMBS_uc009zap.1_Missense_Mutation_p.M278T|HMBS_uc001pva.1_Missense_Mutation_p.M255T|HMBS_uc001pvb.1_Missense_Mutation_p.M264T|HMBS_uc001pvd.1_Missense_Mutation_p.M278T|HMBS_uc001pve.1_Missense_Mutation_p.M238T|HMBS_uc001pvf.1_Missense_Mutation_p.M278T	NM_000190	NP_000181	P08397	HEM3_HUMAN	hydroxymethylbilane synthase isoform 1	295					peptidyl-pyrromethane cofactor linkage	cytosol	hydroxymethylbilane synthase activity				0	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.72e-05)		CAAGAGACCATGCAGGCTACC	0.522									Porphyria_Acute_Intermittent				3	70					0	0	1	0	0	
ARHGEF12	23365	broad.mit.edu	37	11	120317769	120317769	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:120317769A>T	uc001pxl.1	+	18	1571	c.1564A>T	c.(1564-1566)ATT>TTT	p.I522F	ARHGEF12_uc009zat.2_Missense_Mutation_p.I503F|ARHGEF12_uc010rzn.1_Missense_Mutation_p.I419F|ARHGEF12_uc009zau.1_Missense_Mutation_p.I419F	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	522	RGSL.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		TGCAGAACAGATTGTTGCCAA	0.438			T	MLL	AML								13	173					0	0	1	0	0	
GRIK4	2900	broad.mit.edu	37	11	120776003	120776003	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:120776003A>C	uc001pxn.2	+	13	1564	c.1277A>C	c.(1276-1278)AAC>ACC	p.N426T	GRIK4_uc009zav.1_Missense_Mutation_p.N426T|GRIK4_uc009zaw.1_Missense_Mutation_p.N426T|GRIK4_uc009zax.1_Missense_Mutation_p.N426T	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	426	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	CTGCAGGAGAACCCATATTTA	0.577													11	169					0	0	1	0	0	
TBCEL	219899	broad.mit.edu	37	11	120929174	120929174	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:120929174T>A	uc009zay.2	+	6	911	c.833T>A	c.(832-834)ATA>AAA	p.I278K	TBCEL_uc001pxo.2_Missense_Mutation_p.I278K|TBCEL_uc001pxp.2_Missense_Mutation_p.I134K|TBCEL_uc001pxq.2_RNA	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	278	LRRCT.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		AAATTGGTAATAGCCAGGTCT	0.383													13	176					0	0	1	0	0	
TECTA	7007	broad.mit.edu	37	11	121000699	121000699	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:121000699G>A	uc010rzo.1	+	9	2720	c.2720G>A	c.(2719-2721)CGA>CAA	p.R907Q		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	907	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AAGTTTTATCGAAGCCGCTCC	0.557													10	44					0	0	1	0	0	
GRAMD1B	57476	broad.mit.edu	37	11	123483485	123483485	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:123483485C>T	uc001pyx.2	+	14	1836	c.1507C>T	c.(1507-1509)CGC>TGC	p.R503C	GRAMD1B_uc001pyw.2_Missense_Mutation_p.R510C|GRAMD1B_uc010rzw.1_Missense_Mutation_p.R463C|GRAMD1B_uc010rzx.1_Missense_Mutation_p.R463C|GRAMD1B_uc001pyy.2_Missense_Mutation_p.R194C	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	503						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		CACAGAGCTGCGCTATCGAAA	0.537													3	13					0	0	1	0	0	
ACRV1	56	broad.mit.edu	37	11	125547803	125547803	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:125547803G>A	uc001qcs.2	-	2	709	c.442C>T	c.(442-444)CAT>TAT	p.H148Y	ACRV1_uc001qck.2_Missense_Mutation_p.H78Y|ACRV1_uc001qcl.2_Missense_Mutation_p.H78Y|ACRV1_uc001qcm.2_Intron|ACRV1_uc001qcn.2_Missense_Mutation_p.H93Y|ACRV1_uc001qco.2_Missense_Mutation_p.H53Y|ACRV1_uc001qcp.2_Intron|ACRV1_uc001qcq.2_Missense_Mutation_p.H78Y|ACRV1_uc001qcr.2_Missense_Mutation_p.H148Y	NM_001612	NP_001603	P26436	ASPX_HUMAN	acrosomal vesicle protein 1 isoform a precursor	148	4 X 4 AA repeats of S-G-E-H.|2-3.|9 X 5 AA repeats of [SV]-G-E-Q-[PSA].				multicellular organismal development	acrosomal vesicle					0	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0179)|Lung NSC(97;0.0185)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0713)		CCGGAGCCATGTTCACCTGAA	0.547													61	173					0	0	1	0	0	
SRPR	6734	broad.mit.edu	37	11	126136701	126136701	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:126136701C>T	uc001qdh.2	-	5	694	c.643G>A	c.(643-645)GAG>AAG	p.E215K	SRPR_uc010sbm.1_Missense_Mutation_p.E187K|FOXRED1_uc001qdi.2_5'Flank|FOXRED1_uc010sbn.1_5'Flank|FOXRED1_uc010sbo.1_5'Flank|FOXRED1_uc010sbp.1_5'Flank|FOXRED1_uc010sbq.1_5'Flank|FOXRED1_uc001qdj.2_5'Flank|FOXRED1_uc010sbr.1_5'Flank	NM_003139	NP_003130	P08240	SRPR_HUMAN	signal recognition particle receptor	215					SRP-dependent cotranslational protein targeting to membrane	integral to membrane|signal recognition particle receptor complex	GTP binding|GTPase activity|receptor activity|signal recognition particle binding				0	all_hematologic(175;0.145)			BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0736)		ATGAACTCCTCGCGCTTCCTG	0.502													62	120					0	0	1	0	0	
KIRREL3	84623	broad.mit.edu	37	11	126396494	126396494	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:126396494G>A	uc001qea.2	-	3	583	c.222C>T	c.(220-222)TAC>TAT	p.Y74Y	KIRREL3_uc001qeb.2_Silent_p.Y74Y|KIRREL3_uc001qec.1_Silent_p.Y74Y	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	74	Ig-like C2-type 1.|Extracellular (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		CGAAGCCATCGTATTCGGGGA	0.617													8	14					0	0	1	0	0	
NCAPD3	23310	broad.mit.edu	37	11	134073985	134073985	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:134073985C>T	uc001qhd.1	-	10	1777	c.1171G>A	c.(1171-1173)GCT>ACT	p.A391T	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	391					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		ATGAACATAGCGTATTCCCCA	0.423													3	64					0	0	1	0	0	
THYN1	29087	broad.mit.edu	37	11	134121181	134121181	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr11:134121181C>T	uc001qhf.2	-	3	167	c.65G>A	c.(64-66)CGC>CAC	p.R22H	THYN1_uc001qhg.2_Missense_Mutation_p.R22H|THYN1_uc001qhh.2_Missense_Mutation_p.R22H|THYN1_uc001qhi.2_Missense_Mutation_p.R22H|THYN1_uc001qhj.2_Missense_Mutation_p.R22H|THYN1_uc009zdb.2_Missense_Mutation_p.R22H|ACAD8_uc009zdc.2_5'Flank|ACAD8_uc010sco.1_5'Flank|ACAD8_uc010scp.1_5'Flank|ACAD8_uc010scq.1_5'Flank|ACAD8_uc001qhk.2_5'Flank|ACAD8_uc001qhl.2_5'Flank	NM_001037305	NP_001032382	Q9P016	THYN1_HUMAN	thymocyte nuclear protein 1 isoform 1	22						nucleus					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;1.68e-10)|all cancers(11;1.95e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00148)|Lung(977;0.207)		AGTTTTGGTGCGTTTTCCTGA	0.343													30	284					0	0	1	0	0	
CACNA1C	775	broad.mit.edu	37	12	2786373	2786373	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:2786373G>A	uc009zdu.1	+	42	5399	c.5086G>A	c.(5086-5088)GCG>ACG	p.A1696T	CACNA1C_uc009zdv.1_Missense_Mutation_p.A1645T|CACNA1C_uc001qkb.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qkc.2_Missense_Mutation_p.A1667T|CACNA1C_uc001qke.2_Missense_Mutation_p.A1637T|CACNA1C_uc001qkf.2_Missense_Mutation_p.A1656T|CACNA1C_uc001qjz.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qkd.2_Missense_Mutation_p.A1667T|CACNA1C_uc001qkg.2_Missense_Mutation_p.A1654T|CACNA1C_uc009zdw.1_Missense_Mutation_p.A1689T|CACNA1C_uc001qkh.2_Missense_Mutation_p.A1656T|CACNA1C_uc001qkl.2_Missense_Mutation_p.A1696T|CACNA1C_uc001qkn.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qko.2_Missense_Mutation_p.A1668T|CACNA1C_uc001qkp.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qkr.2_Missense_Mutation_p.A1665T|CACNA1C_uc001qku.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qkq.2_Missense_Mutation_p.A1676T|CACNA1C_uc001qks.2_Missense_Mutation_p.A1648T|CACNA1C_uc001qkt.2_Missense_Mutation_p.A1667T|CACNA1C_uc001qki.1_Missense_Mutation_p.A1384T|CACNA1C_uc001qkj.1_Missense_Mutation_p.A1384T|CACNA1C_uc001qkk.1_Missense_Mutation_p.A1384T|CACNA1C_uc001qkm.1_Missense_Mutation_p.A1373T|CACNA1C_uc010sea.1_Missense_Mutation_p.A339T|uc001qkx.1_RNA|CACNA1C_uc001qky.1_5'Flank	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1696	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CCAGAGGAACGCGCTGTCTCT	0.632													4	15					0	0	1	0	0	
PRMT8	56341	broad.mit.edu	37	12	3701425	3701425	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:3701425G>A	uc001qmf.2	+	9	1375	c.1008G>A	c.(1006-1008)AAG>AAA	p.K336K	PRMT8_uc009zed.2_Silent_p.K327K|PRMT8_uc001qmg.2_Silent_p.K150K|PRMT8_uc001qmh.2_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	336					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			CCCACTGGAAGCAGACCGTCT	0.537													29	202					0	0	1	0	0	
KCNA5	3741	broad.mit.edu	37	12	5154886	5154886	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:5154886C>T	uc001qni.2	+	1	1802	c.1573C>T	c.(1573-1575)CGG>TGG	p.R525W		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	525						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						CTTCTACCACCGGGAAACGGA	0.637													10	32					0	0	1	0	0	
CHD4	1108	broad.mit.edu	37	12	6707121	6707121	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:6707121G>A	uc001qpo.2	-	12	1995	c.1831C>T	c.(1831-1833)CGC>TGC	p.R611C	CHD4_uc001qpn.2_Missense_Mutation_p.R604C|CHD4_uc001qpp.2_Missense_Mutation_p.R608C	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	611					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CGATAGAAGCGTTCCTCCATC	0.512													50	105					0	0	1	0	0	
SLC2A14	144195	broad.mit.edu	37	12	7970451	7970451	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:7970451G>A	uc001qtk.2	-	15	2113	c.1320C>T	c.(1318-1320)GTC>GTT	p.V440V	SLC2A14_uc001qtl.2_Silent_p.V417V|SLC2A14_uc001qtm.2_Silent_p.V417V|SLC2A14_uc010sgg.1_Silent_p.V331V|SLC2A14_uc001qtn.2_Silent_p.V440V|SLC2A14_uc001qto.2_Silent_p.V75V|SLC2A14_uc010sgh.1_Silent_p.V455V	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	440	Helical; Name=11; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		AGAGCAATCCGACTAGGAAGT	0.413													26	63					0	0	1	0	0	
CLEC1A	51267	broad.mit.edu	37	12	10224068	10224068	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:10224068C>T	uc001qxb.2	-	6	791	c.707G>A	c.(706-708)TGT>TAT	p.C236Y	CLEC1A_uc009zhf.2_Missense_Mutation_p.C148Y|CLEC1A_uc001qxc.2_Missense_Mutation_p.C148Y|CLEC1A_uc001qxd.2_Missense_Mutation_p.C193Y|CLEC1A_uc010sgx.1_Missense_Mutation_p.C134Y	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	236	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						GATGGCCACACAGTCTCTGCT	0.398													42	104					0	0	1	0	0	
GPR19	2842	broad.mit.edu	37	12	12815196	12815196	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:12815196C>T	uc001rar.3	-	2	380	c.187G>A	c.(187-189)GGG>AGG	p.G63R	GPR19_uc001raq.2_Missense_Mutation_p.G63R	NM_006143	NP_006134	Q15760	GPR19_HUMAN	G protein-coupled receptor 19	63	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		GCCACTTCCCCGGGTTTCAGC	0.488													7	92					0	0	1	0	0	
KIAA1467	57613	broad.mit.edu	37	12	13232857	13232857	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:13232857C>T	uc001rbi.2	+	12	1800	c.1777C>T	c.(1777-1779)CAG>TAG	p.Q593*	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	593						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		CCAGATGGCTCAGCTACAGGA	0.562													17	37					0	0	1	0	0	
GOLT1B	51026	broad.mit.edu	37	12	21665245	21665245	+	Missense_Mutation	SNP	G	A	A	rs34378602	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:21665245G>A	uc001rez.2	+	4	472	c.313G>A	c.(313-315)GTT>ATT	p.V105I	GOLT1B_uc009zis.2_RNA|GOLT1B_uc009zit.2_RNA|GOLT1B_uc009ziu.2_RNA	NM_016072	NP_057156	Q9Y3E0	GOT1B_HUMAN	golgi transport 1 homolog B	105	Phe-rich.|Helical; Name=4; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport|vesicle-mediated transport	endoplasmic reticulum|Golgi membrane|integral to membrane	signal transducer activity				0						CTTTCCTGTCGTTGTTGGCTT	0.343													6	105					0	0	1	0	0	
SOX5	6660	broad.mit.edu	37	12	23999035	23999035	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:23999035G>A	uc001rfw.2	-	3	465	c.363C>T	c.(361-363)GGC>GGT	p.G121G	SOX5_uc001rfx.2_Silent_p.G108G|SOX5_uc001rfy.2_Silent_p.G108G|SOX5_uc010siv.1_Silent_p.G108G|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Silent_p.G73G|SOX5_uc001rga.2_Silent_p.G86G	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	121					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						ACAAGGACTCGCCACTCTGTC	0.493													31	76					0	0	1	0	0	
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:25398284C>T	uc001rgp.1	-	2	216	c.35G>A	c.(34-36)GGT>GAT	p.G12D	KRAS_uc001rgq.1_Missense_Mutation_p.G12D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			8	25					0	0	1	0	0	
IPO8	10526	broad.mit.edu	37	12	30792613	30792613	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:30792613A>G	uc001rjd.2	-	21	2495	c.2325T>C	c.(2323-2325)ACT>ACC	p.T775T	IPO8_uc001rje.1_Silent_p.T264T|IPO8_uc010sjt.1_Silent_p.T570T	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	775					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GAAGCTCACTAGTTTTGACCC	0.433													8	142					0	0	1	0	0	
IPO8	10526	broad.mit.edu	37	12	30826944	30826944	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:30826944A>G	uc001rjd.2	-	8	1059	c.889T>C	c.(889-891)TAT>CAT	p.Y297H	IPO8_uc010sjt.1_Missense_Mutation_p.Y92H	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	297					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CCCACTGCATAGGTTTTCAAA	0.323													5	48					0	0	1	0	0	
FAM113B	91523	broad.mit.edu	37	12	47629940	47629940	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:47629940C>T	uc001rpn.2	+	4	1825	c.1094C>T	c.(1093-1095)GCA>GTA	p.A365V	FAM113B_uc001rpq.2_Missense_Mutation_p.A365V	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	365	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					TCAGCCCATGCAGGTTTCTTC	0.532													27	86					0	0	1	0	0	
ZNF641	121274	broad.mit.edu	37	12	48737243	48737243	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:48737243G>A	uc001rrn.1	-	6	995	c.830C>T	c.(829-831)TCC>TTC	p.S277F	ZNF641_uc001rro.1_Missense_Mutation_p.S263F|ZNF641_uc010sls.1_Missense_Mutation_p.S254F	NM_152320	NP_689533	Q96N77	ZN641_HUMAN	zinc finger protein 641	277	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						GGCAAGGTGGGAACCCCATAC	0.522													6	55					0	0	1	0	0	
ADCY6	112	broad.mit.edu	37	12	49165623	49165623	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:49165623G>A	uc001rsh.3	-	18	3581	c.2921C>T	c.(2920-2922)TCG>TTG	p.S974L	ADCY6_uc001rsj.3_Missense_Mutation_p.S974L|ADCY6_uc001rsi.3_Missense_Mutation_p.S921L|ADCY6_uc010slw.1_Missense_Mutation_p.S205L	NM_015270	NP_056085	O43306	ADCY6_HUMAN	adenylate cyclase 6 isoform a	974	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane	ATP binding|metal ion binding				0						ACACTCACACGACTGATAGTA	0.562													28	50					0	0	1	0	0	
WNT10B	7480	broad.mit.edu	37	12	49361903	49361903	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:49361903G>A	uc001rss.2	-	4	883	c.537C>T	c.(535-537)AGC>AGT	p.S179S	WNT10B_uc001rst.2_Intron	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	179					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						cagggccagggctgggCAGAG	0.473													4	33					0	0	1	0	0	
MLL2	8085	broad.mit.edu	37	12	49425776	49425776	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:49425776G>A	uc001rta.3	-	39	12712	c.12712C>T	c.(12712-12714)CGC>TGC	p.R4238C		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4238	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding	p.R3968C(1)		kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGGGTCTGGCGTACTGCCTGA	0.642			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			11	19					0	0	1	0	0	
KCNH3	23416	broad.mit.edu	37	12	49948156	49948156	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:49948156G>A	uc001ruh.1	+	11	2215	c.1955G>A	c.(1954-1956)CGG>CAG	p.R652Q	KCNH3_uc010smj.1_Missense_Mutation_p.R592Q	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	652	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CTGCCCCGGCGGGAGCAGGTG	0.637													13	118					0	0	1	0	0	
GPD1	2819	broad.mit.edu	37	12	50498451	50498451	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:50498451G>T	uc001rvz.2	+	2	169	c.136G>T	c.(136-138)GGA>TGA	p.G46*	GPD1_uc010smp.1_Nonsense_Mutation_p.G46*|GPD1_uc001rwa.2_Nonsense_Mutation_p.G46*	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	46					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	GGAAGACATTGGAGGCAAAAA	0.552													12	139					1.05317e-09	1.1283e-09	1	1	0	
LETMD1	25875	broad.mit.edu	37	12	51450008	51450008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:51450008C>T	uc001rxm.2	+	6	798	c.742C>T	c.(742-744)CAA>TAA	p.Q248*	LETMD1_uc010smz.1_Nonsense_Mutation_p.Q198*|LETMD1_uc010sna.1_Intron|LETMD1_uc001rxl.2_Nonsense_Mutation_p.Q192*|LETMD1_uc009zlv.2_Intron|LETMD1_uc001rxs.2_Intron|LETMD1_uc009zlw.2_Nonsense_Mutation_p.Q261*|LETMD1_uc001rxn.2_Nonsense_Mutation_p.Q91*|LETMD1_uc001rxo.2_RNA|LETMD1_uc001rxp.2_Nonsense_Mutation_p.Q131*|LETMD1_uc001rxq.2_Intron|LETMD1_uc001rxr.2_Intron|LETMD1_uc001rxt.2_Intron	NM_015416	NP_056231	Q6P1Q0	LTMD1_HUMAN	LETM1 domain containing 1 isoform 1	248	Mitochondrial intermembrane (Potential).|LETM1.					integral to membrane|mitochondrial outer membrane	protein binding			central_nervous_system(2)	2						GGGCATGAACCAACTCCAGGC	0.468													11	119					0	0	1	0	0	
CSRNP2	81566	broad.mit.edu	37	12	51461489	51461489	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:51461489C>T	uc001rxu.1	-	4	973	c.675G>A	c.(673-675)GCG>GCA	p.A225A		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	225	Cys-rich.				apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						TGCAGGCACACGCTTCTGGGT	0.547													27	87					0	0	1	0	0	
CSRNP2	81566	broad.mit.edu	37	12	51470194	51470194	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:51470194G>A	uc001rxu.1	-	2	449	c.151C>T	c.(151-153)CCC>TCC	p.P51S		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	51					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GCTTACTCACGTGTGAAGCTG	0.552													7	60					0	0	1	0	0	
DAZAP2	9802	broad.mit.edu	37	12	51634184	51634184	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:51634184C>A	uc010snd.1	+	2	255	c.71C>A	c.(70-72)CCT>CAT	p.P24H	DAZAP2_uc001ryb.2_Missense_Mutation_p.P24H|DAZAP2_uc010snc.1_Missense_Mutation_p.P24H|DAZAP2_uc010sne.1_Missense_Mutation_p.P24H|DAZAP2_uc010snf.1_Missense_Mutation_p.P24H	NM_001136266	NP_001129738	Q15038	DAZP2_HUMAN	DAZ associated protein 2 isoform c	24	Pro-rich.						WW domain binding				0						CCAGTATACCCTCAGACCTTG	0.498													24	64					8.24728e-16	8.98749e-16	1	1	0	
ACVR1B	91	broad.mit.edu	37	12	52377793	52377793	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:52377793C>A	uc001rzn.2	+	5	864	c.822C>A	c.(820-822)ACC>ACA	p.T274T	ACVR1B_uc001rzl.2_Silent_p.T274T|ACVR1B_uc001rzm.2_Silent_p.T274T|ACVR1B_uc010snn.1_Silent_p.T315T	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	274	Protein kinase.|Cytoplasmic (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	ATAATGGCACCTGGACACAGC	0.443													4	54					0.00909568	0.00923047	1	1	0	
KRT80	144501	broad.mit.edu	37	12	52567501	52567501	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:52567501G>A	uc001rzx.2	-	5	812	c.714C>T	c.(712-714)GTC>GTT	p.V238V	KRT80_uc001rzw.2_Silent_p.V273V|KRT80_uc001rzy.2_Silent_p.V238V	NM_182507	NP_872313	Q6KB66	K2C80_HUMAN	keratin 80 isoform a	238	Linker 12.|Rod.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.108)		TGTCCATGCCGACGGTCACCG	0.672													19	56					0	0	1	0	0	
KRT6C	286887	broad.mit.edu	37	12	52867410	52867410	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:52867410C>T	uc001sal.3	-	1	160	c.112G>A	c.(112-114)GTG>ATG	p.V38M		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	38	Head.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		GAGCGGGACACGGAGATGCTG	0.657													18	53					0	0	1	0	0	
KRT79	338785	broad.mit.edu	37	12	53217775	53217775	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:53217775C>G	uc001sbb.2	-	6	1075	c.1042G>C	c.(1042-1044)GCT>CCT	p.A348P	KRT79_uc001sba.2_Missense_Mutation_p.A119P	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	348	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						TGCTTCCCAGCAGTCACCTGC	0.597													3	53					0	0	1	0	0	
TENC1	23371	broad.mit.edu	37	12	53457555	53457555	+	Silent	SNP	G	A	A	rs148970226		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:53457555G>A	uc001sbp.2	+	29	4254	c.4119G>A	c.(4117-4119)CCG>CCA	p.P1373P	TENC1_uc001sbl.2_Silent_p.P1249P|TENC1_uc001sbn.2_Silent_p.P1383P|TENC1_uc001sbq.2_Silent_p.P771P|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Silent_p.P866P|TENC1_uc001sbs.2_Silent_p.P192P	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	1373					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						CCAAGAAGCCGGGAAGCCCCT	0.547													41	133					0	0	1	0	0	
SOAT2	8435	broad.mit.edu	37	12	53517580	53517580	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:53517580C>T	uc001sbv.2	+	14	1529	c.1441C>T	c.(1441-1443)CTG>TTG	p.L481L	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	481	Helical; (Potential).				cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						GTGGACCATGCTGTTTCTAGG	0.577													17	83					0	0	1	0	0	
ESPL1	9700	broad.mit.edu	37	12	53686104	53686104	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:53686104A>C	uc001sck.2	+	28	5930	c.5839A>C	c.(5839-5841)AGT>CGT	p.S1947R	ESPL1_uc001scj.2_Missense_Mutation_p.S1622R	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1947					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						GGATCCACGAAGTACCTTCTA	0.532													29	81					0	0	1	0	0	
HNRNPA1	3178	broad.mit.edu	37	12	54676031	54676031	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:54676031G>T	uc001sfl.2	+	4	541	c.437G>T	c.(436-438)AGG>ATG	p.R146M	CBX5_uc001sfk.3_5'Flank|CBX5_uc001sfi.3_5'Flank|HNRNPA1_uc001sfm.2_Missense_Mutation_p.R146M|HNRNPA1_uc009zng.2_Missense_Mutation_p.R146M|HNRNPA1_uc009znh.2_Missense_Mutation_p.R146M|HNRNPA1_uc009zni.2_Missense_Mutation_p.R146M|HNRNPA1_uc001sfn.2_Missense_Mutation_p.R146M|HNRNPA1_uc001sfo.3_RNA|HNRNPA1_uc001sfp.1_Missense_Mutation_p.R101M|HNRNPA1_uc009znj.1_Missense_Mutation_p.R101M	NM_031157	NP_112420	P09651	ROA1_HUMAN	heterogeneous nuclear ribonucleoprotein A1	146	Globular B domain.|RRM 2.			R -> K (in Ref. 2; CAA29922).	interspecies interaction between organisms|mRNA transport|nuclear import	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|single-stranded DNA binding			skin(2)|ovary(1)	3						GGCAAGAAAAGGGGCTTTGCC	0.398													21	46					4.22769e-11	4.56644e-11	1	1	0	
NCKAP1L	3071	broad.mit.edu	37	12	54930016	54930016	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:54930016C>T	uc001sgc.3	+	28	3139	c.3060C>T	c.(3058-3060)AGC>AGT	p.S1020S	NCKAP1L_uc010sox.1_Silent_p.S562S|NCKAP1L_uc010soy.1_Silent_p.S970S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1020					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCTTTTATAGCATTGAGAAGG	0.468													5	40					0	0	1	0	0	
SUOX	6821	broad.mit.edu	37	12	56397718	56397718	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:56397718G>A	uc001six.2	+	6	871	c.545G>A	c.(544-546)CGT>CAT	p.R182H	SUOX_uc001siy.2_Missense_Mutation_p.R182H|SUOX_uc001siz.2_Missense_Mutation_p.R182H|SUOX_uc001sja.2_Missense_Mutation_p.R182H	NM_000456	NP_000447	P51687	SUOX_HUMAN	sulfite oxidase precursor	182	Molybdenum-pterin domain (By similarity).					mitochondrial intermembrane space	electron carrier activity|molybdenum ion binding|sulfite oxidase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.119)			GATCCTGTACGTCACCCAGCC	0.542													5	29					0	0	1	0	0	
SMARCC2	6601	broad.mit.edu	37	12	56579984	56579984	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:56579984C>A	uc001skb.2	-	3	378	c.272G>T	c.(271-273)TGC>TTC	p.C91F	SMARCC2_uc001skd.2_Missense_Mutation_p.C91F|SMARCC2_uc001ska.2_Missense_Mutation_p.C91F|SMARCC2_uc001skc.2_Missense_Mutation_p.C91F|SMARCC2_uc010sqf.1_5'UTR	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	91					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			AAGAATGTGGCACAAGGAGCC	0.398													24	69					5.61819e-17	6.13806e-17	1	1	0	
CS	1431	broad.mit.edu	37	12	56669893	56669893	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:56669893G>A	uc001sks.1	-	7	865	c.675C>T	c.(673-675)AGC>AGT	p.S225S	CS_uc010sql.1_Silent_p.S212S|CS_uc001skr.1_Silent_p.S159S|CS_uc001skt.1_Silent_p.S180S|CS_uc010sqm.1_Silent_p.S159S	NM_004077	NP_004068	O75390	CISY_HUMAN	citrate synthase precursor	225					cellular carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	citrate (Si)-synthase activity				0		Myeloproliferative disorder(1001;0.000374)		BRCA - Breast invasive adenocarcinoma(357;6.17e-07)		CCCCAATACCGCTGCCTTCTC	0.458													16	51					0	0	1	0	0	
PAN2	9924	broad.mit.edu	37	12	56716264	56716264	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:56716264G>A	uc001skx.2	-	19	3025	c.2652C>T	c.(2650-2652)GGC>GGT	p.G884G	PAN2_uc001skw.2_Silent_p.G32G|PAN2_uc001skz.2_Silent_p.G883G|PAN2_uc001sky.2_Silent_p.G880G	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	884					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						GGTGAGTAACGCCCTATGGAA	0.433													13	55					0	0	1	0	0	
PAN2	9924	broad.mit.edu	37	12	56718366	56718366	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:56718366T>C	uc001skx.2	-	11	2100	c.1727A>G	c.(1726-1728)CAG>CGG	p.Q576R	PAN2_uc001skw.2_5'Flank|PAN2_uc001skz.2_Missense_Mutation_p.Q576R|PAN2_uc001sky.2_Missense_Mutation_p.Q576R	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	576					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						AGTACTGACCTGGCAAGGGTC	0.463													5	93					0	0	1	0	0	
NACA	4666	broad.mit.edu	37	12	57107321	57107321	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:57107321C>T	uc001slz.2	-	5	730	c.381G>A	c.(379-381)AAG>AAA	p.K127K	NACA_uc001sly.2_Silent_p.K127K|NACA_uc009zoy.1_Silent_p.K1990K|NACA_uc001smc.2_Silent_p.K127K|NACA_uc001sma.2_Silent_p.K837K|NACA_uc001smb.2_Silent_p.K127K|NACA_uc010squ.1_RNA	NM_001113201	NP_001106672	Q13765	NACA_HUMAN	nascent polypeptide-associated complex alpha	127	NAC-A/B.				interspecies interaction between organisms|protein transport|transcription, DNA-dependent|translation	nascent polypeptide-associated complex|nucleus	DNA binding			ovary(1)	1						GTTTACTCACCTTGGCTTCCC	0.274			T	BCL6	NHL								10	122					0	0	1	0	0	
KIF5A	3798	broad.mit.edu	37	12	57963455	57963455	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:57963455G>A	uc001sor.1	+	11	1314	c.1106G>A	c.(1105-1107)CGG>CAG	p.R369Q	KIF5A_uc010srr.1_Missense_Mutation_p.R280Q	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	369					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						GAGCTGAGCCGGTGGCGCAAT	0.438													12	25					0	0	1	0	0	
MARCH9	92979	broad.mit.edu	37	12	58152041	58152041	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:58152041A>T	uc001spx.1	+	3	1076	c.664A>T	c.(664-666)ATC>TTC	p.I222F	MARCH9_uc001spy.2_Missense_Mutation_p.I109F	NM_138396	NP_612405	Q86YJ5	MARH9_HUMAN	membrane-associated RING-CH protein IX	222	Helical; (Potential).					Golgi membrane|Golgi stack|integral to membrane|lysosomal membrane|trans-Golgi network	ligase activity|zinc ion binding				0	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			GCTCTTTCAGATCTGCTACGG	0.532													5	54					0	0	1	0	0	
LEMD3	23592	broad.mit.edu	37	12	65564751	65564751	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:65564751C>T	uc001ssl.1	+	1	1381	c.1375C>T	c.(1375-1377)CGG>TGG	p.R459W	LEMD3_uc009zqo.1_Missense_Mutation_p.R459W	NM_014319	NP_055134	Q9Y2U8	MAN1_HUMAN	LEM domain containing 3	459					negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway	integral to nuclear inner membrane|membrane fraction	DNA binding|nucleotide binding|protein binding			central_nervous_system(3)|ovary(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0104)		GCAATTTAAACGGGAGGAGGT	0.463													3	68					0	0	1	0	0	
HELB	92797	broad.mit.edu	37	12	66696454	66696454	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:66696454A>G	uc001sti.2	+	1	99	c.71A>G	c.(70-72)GAG>GGG	p.E24G	HELB_uc010ssz.1_RNA|HELB_uc009zqt.1_RNA	NM_033647	NP_387467	Q8NG08	HELB_HUMAN	helicase (DNA) B	24					DNA replication, synthesis of RNA primer		ATP binding|ATP-dependent 5'-3' DNA helicase activity|single-stranded DNA-dependent ATP-dependent DNA helicase activity			central_nervous_system(1)|pancreas(1)	2			GBM - Glioblastoma multiforme(2;0.000142)	GBM - Glioblastoma multiforme(28;0.0265)		CTGGTGGAGGAGGACGACGAC	0.602													3	41					0	0	1	0	0	
GLIPR1	11010	broad.mit.edu	37	12	75884201	75884201	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:75884201A>G	uc001sxs.2	+	3	584	c.436A>G	c.(436-438)AGT>GGT	p.S146G	GLIPR1_uc009zsb.1_Missense_Mutation_p.I169M	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	146					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						TTGGGCAGATAGTTACAAAGT	0.388													9	28					0	0	1	0	0	
MYF5	4617	broad.mit.edu	37	12	81111208	81111208	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:81111208G>A	uc001szg.2	+	1	501	c.366G>A	c.(364-366)GAG>GAA	p.E122E		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	122	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CCAAGGTGGAGATCCTCAGGA	0.592													11	100					0	0	1	0	0	
PPFIA2	8499	broad.mit.edu	37	12	81741514	81741514	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:81741514C>T	uc001szo.1	-	18	2191	c.2030G>A	c.(2029-2031)CGT>CAT	p.R677H	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	603										ovary(3)|lung(2)|pancreas(1)	6						TTCTTCAGCACGCAACTCTGT	0.398													8	68					0	0	1	0	0	
EEA1	8411	broad.mit.edu	37	12	93192691	93192691	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:93192691G>A	uc001tck.2	-	21	3209	c.2944C>T	c.(2944-2946)CTT>TTT	p.L982F		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	982	Gln/Glu/Lys-rich.|Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						GCAATTTTAAGCTCTCCTTGG	0.303													10	81					0	0	1	0	0	
CCDC41	51134	broad.mit.edu	37	12	94806263	94806263	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:94806263C>T	uc001tdd.2	-	3	590	c.4G>A	c.(4-6)GTT>ATT	p.V2I	CCDC41_uc001tde.2_Missense_Mutation_p.V2I|CCDC41_uc009zsw.1_Intron|CCDC41_uc001tdf.2_Missense_Mutation_p.V2I	NM_016122	NP_057206	Q9Y592	CCD41_HUMAN	NY-REN-58 antigen	Error:Variant_position_missing_in_Q9Y592_after_alignment											0						GTGCTGACAACCATGTAAAAA	0.398													11	56					0	0	1	0	0	
FGD6	55785	broad.mit.edu	37	12	95604120	95604120	+	Missense_Mutation	SNP	T	C	C	rs74379313		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:95604120T>C	uc001tdp.3	-	2	1164	c.940A>G	c.(940-942)ACT>GCT	p.T314A	FGD6_uc009zsx.2_Intron	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	314					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						GGCTTGGGAGTTGGAAATTTT	0.413													9	103					0	0	1	0	0	
C12orf63	374467	broad.mit.edu	37	12	97043775	97043775	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:97043775A>C	uc001tet.1	+	2	150	c.72A>C	c.(70-72)AAA>AAC	p.K24N		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	24										skin(6)|ovary(1)	7						CTAGTGCTAAAGAAAAGGACC	0.333													12	85					0	0	1	0	0	
SLC5A8	160728	broad.mit.edu	37	12	101555808	101555808	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:101555808C>T	uc001thz.3	-	13	1964	c.1574G>A	c.(1573-1575)AGC>AAC	p.S525N		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	525	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						TCCAACAGTGCTGAAGTACAG	0.348													17	279					0	0	1	0	0	
SART3	9733	broad.mit.edu	37	12	108918245	108918245	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:108918245C>T	uc001tmz.1	-	18	2797	c.2562G>A	c.(2560-2562)GCG>GCA	p.A854A	SART3_uc001tmy.1_Silent_p.A380A|SART3_uc009zux.1_Silent_p.A466A|SART3_uc010swx.1_Silent_p.A818A	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	854	RRM 2.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						CAGCCTGCGACGCCTGGGATT	0.532									Porokeratosis				17	56					0	0	1	0	0	
CUX2	23316	broad.mit.edu	37	12	111652089	111652089	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:111652089G>A	uc001tsa.1	+	2	302	c.149G>A	c.(148-150)CGG>CAG	p.R50Q	CUX2_uc001tsb.1_Missense_Mutation_p.R105Q	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	50						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GAACTCCGCCGGGAATTTAAG	0.378													7	55					0	0	1	0	0	
C12orf51	283450	broad.mit.edu	37	12	112711506	112711506	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:112711506T>G	uc009zwc.2	-	4	617	c.599A>C	c.(598-600)TAT>TCT	p.Y200S	C12orf51_uc010syk.1_Missense_Mutation_p.Y23S|C12orf51_uc001tts.2_Missense_Mutation_p.Y23S|C12orf51_uc001ttt.3_Missense_Mutation_p.Y23S	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CTGGCAGACATAATGGAAGGC	0.453													12	122					0	0	1	0	0	
RASAL1	8437	broad.mit.edu	37	12	113553825	113553825	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:113553825G>A	uc001tum.1	-	10	1056	c.763C>T	c.(763-765)CGC>TGC	p.R255C	RASAL1_uc010syp.1_Missense_Mutation_p.R255C|RASAL1_uc001tul.2_Missense_Mutation_p.R255C|RASAL1_uc001tun.1_Missense_Mutation_p.R255C|RASAL1_uc010syq.1_Missense_Mutation_p.R255C|RASAL1_uc001tuo.3_Missense_Mutation_p.R255C|RASAL1_uc010syr.1_Missense_Mutation_p.R255C	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	255					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TCAATCAGGCGTACCTTCACT	0.493													10	49					0	0	1	0	0	
LHX5	64211	broad.mit.edu	37	12	113907132	113907132	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:113907132G>A	uc001tvj.1	-	2	766	c.192C>T	c.(190-192)TGC>TGT	p.C64C		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	64	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CGCAGCCGGCGCATTTCGTGC	0.617													4	47					0	0	1	0	0	
FBXW8	26259	broad.mit.edu	37	12	117365934	117365934	+	Splice_Site	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:117365934T>C	uc001twg.1	+	2	505	c.423_splice	c.e2+2	p.Q141_splice	FBXW8_uc001twf.1_Splice_Site_p.Q75_splice|FBXW8_uc009zwp.1_Splice_Site	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform								protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		TGTGCACAGGTAAGGTGTCAC	0.373													9	71					0	0	1	0	0	
SRRM4	84530	broad.mit.edu	37	12	119563220	119563220	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:119563220C>T	uc001txa.1	+	7	842	c.550C>T	c.(550-552)CGC>TGC	p.R184C		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	184	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						TCACCGCCACCGCCATCACCG	0.478													13	47					0	0	1	0	0	
HSPB8	26353	broad.mit.edu	37	12	119617314	119617314	+	Missense_Mutation	SNP	C	T	T	rs140173724		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:119617314C>T	uc001txb.2	+	1	720	c.197C>T	c.(196-198)TCG>TTG	p.S66L	HSPB8_uc001txc.2_Missense_Mutation_p.S66L	NM_014365	NP_055180	Q9UJY1	HSPB8_HUMAN	heat shock 22kDa protein 8	66					cell death|response to heat	cytoplasm|nucleus	identical protein binding|protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACCCTAAGGTCGGGCATGGTG	0.687													21	48					0	0	1	0	0	
GCN1L1	10985	broad.mit.edu	37	12	120569133	120569133	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:120569133G>A	uc001txo.2	-	55	7432	c.7419C>T	c.(7417-7419)GAC>GAT	p.D2473D		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2473					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGCCGGACACGTCCGCTGGGT	0.612													6	58					0	0	1	0	0	
GCN1L1	10985	broad.mit.edu	37	12	120597681	120597681	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:120597681G>A	uc001txo.2	-	24	2710	c.2697C>T	c.(2695-2697)AAC>AAT	p.N899N		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	899					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACAAGAAGGGGTTCTTGATCC	0.587													7	44					0	0	1	0	0	
GCN1L1	10985	broad.mit.edu	37	12	120615500	120615500	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:120615500G>A	uc001txo.2	-	8	729	c.716C>T	c.(715-717)CCG>CTG	p.P239L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	239					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAGGTACTTCGGAGGCTTGAC	0.463													6	267					0	0	1	0	0	
MSI1	4440	broad.mit.edu	37	12	120785280	120785280	+	Silent	SNP	T	C	C	rs150872271	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:120785280T>C	uc001tye.1	-	12	892	c.828A>G	c.(826-828)GCA>GCG	p.A276A		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	276	Poly-Ala.				nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGCCGCCGCTGCCGCCGCCA	0.627													14	160					0	0	1	0	0	
CAMKK2	10645	broad.mit.edu	37	12	121678602	121678602	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:121678602A>G	uc001tzu.2	-	17	1791	c.1667T>C	c.(1666-1668)GTG>GCG	p.V556A	CAMKK2_uc001tzt.2_Nonstop_Mutation_p.*542R|CAMKK2_uc001tzv.2_Missense_Mutation_p.V556A|CAMKK2_uc001tzw.2_Missense_Mutation_p.V513A|CAMKK2_uc001tzx.2_Nonstop_Mutation_p.*542R|CAMKK2_uc001tzy.2_Nonstop_Mutation_p.*499R|CAMKK2_uc001tzz.1_Intron|CAMKK2_uc001uaa.1_Intron	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	556					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ACTGCCTCTCACAAGAGCACT	0.657													4	66					0	0	1	0	0	
KDM2B	84678	broad.mit.edu	37	12	122018691	122018691	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:122018691C>A	uc001uat.2	-	1	230	c.126G>T	c.(124-126)CAG>CAT	p.Q42H	KDM2B_uc001uas.2_5'Flank|KDM2B_uc001uau.2_5'UTR|KDM2B_uc001uav.3_Missense_Mutation_p.Q42H	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	42					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CCAACATTACCTGTGTGGCCG	0.507													7	134					0.000442599	0.000456189	1	1	0	
LRRC43	254050	broad.mit.edu	37	12	122684777	122684777	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:122684777T>G	uc009zxm.2	+	8	1416	c.1391T>G	c.(1390-1392)GTC>GGC	p.V464G	LRRC43_uc001ubw.3_Missense_Mutation_p.V279G|LRRC43_uc009zxn.2_Missense_Mutation_p.V225G	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	464											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		TGGGCTGAGGTCATCCCCTGC	0.647													25	101					0	0	1	0	0	
PITPNM2	57605	broad.mit.edu	37	12	123471271	123471271	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:123471271G>A	uc001uej.1	-	23	3658	c.3519C>T	c.(3517-3519)GGC>GGT	p.G1173G	PITPNM2_uc001uek.1_Silent_p.G1167G	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	1173					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		AGGACACCACGCCATGGGGGA	0.667													21	52					0	0	1	0	0	
CDK2AP1	8099	broad.mit.edu	37	12	123749783	123749783	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:123749783C>T	uc001ueq.2	-	3	762	c.240G>A	c.(238-240)ACG>ACA	p.T80T	CDK2AP1_uc001uep.2_RNA	NM_004642	NP_004633	O14519	CDKA1_HUMAN	CDK2-associated protein  1	80					DNA-dependent DNA replication|protein phosphorylation|S phase of mitotic cell cycle	cytoplasm|nucleus	DNA binding|protein binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000554)|Epithelial(86;0.00178)		TCCCTGCGTACGTGGGTCTGA	0.582													13	203					0	0	1	0	0	
DNAH10	196385	broad.mit.edu	37	12	124270304	124270304	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:124270304C>T	uc001uft.3	+	9	1084	c.1059C>T	c.(1057-1059)CAC>CAT	p.H353H		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	353	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACATAACGCACGGGTCTGGCT	0.527													9	64					0	0	1	0	0	
GPR133	283383	broad.mit.edu	37	12	131471729	131471729	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:131471729A>G	uc001uit.3	+	6	1139	c.580A>G	c.(580-582)AGT>GGT	p.S194G	GPR133_uc010tbm.1_Missense_Mutation_p.S226G	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	194	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CTCTGATCCGAGTGGAAAAGT	0.512													8	84					0	0	1	0	0	
MMP17	4326	broad.mit.edu	37	12	132325164	132325164	+	Missense_Mutation	SNP	C	T	T	rs146831311		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:132325164C>T	uc001ujc.1	+	4	568	c.469C>T	c.(469-471)CGT>TGT	p.R157C	MMP17_uc001ujd.1_Missense_Mutation_p.R73C	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	157					proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CGACACGGTGCGTGCACTCAT	0.652													26	89					0	0	1	0	0	
LOC284232	284232	broad.mit.edu	37	13	19444790	19444790	+	RNA	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:19444790T>C	uc010tcj.1	-	1		c.1320A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ACTGGCCTTTTAACATAAACA	0.313													8	69					0	0	1	0	0	
EFHA1	221154	broad.mit.edu	37	13	22084194	22084194	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:22084194C>T	uc001uof.2	-	8	732	c.710G>A	c.(709-711)CGT>CAT	p.R237H	EFHA1_uc010tct.1_Missense_Mutation_p.R27H	NM_152726	NP_689939	Q8IYU8	EFHA1_HUMAN	EF-hand domain family, member A1	237	EF-hand 2.						calcium ion binding				0		all_cancers(29;1.24e-15)|all_epithelial(30;5.4e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000171)|Epithelial(112;0.000398)|OV - Ovarian serous cystadenocarcinoma(117;0.00641)|Lung(94;0.189)		TCCAAAGAAACGCATCTGAAG	0.229													13	39					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23905259	23905259	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:23905259A>G	uc001uon.2	-	10	13345	c.12756T>C	c.(12754-12756)TCT>TCC	p.S4252S	SACS_uc001uoo.2_Silent_p.S4105S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	4252					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding	p.T4252S(1)		ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CCCTGCTTTGAGAGCTTTCCT	0.433													10	43					0	0	1	0	0	
SACS	26278	broad.mit.edu	37	13	23928962	23928962	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:23928962A>C	uc001uon.2	-	8	2378	c.1789T>G	c.(1789-1791)TCA>GCA	p.S597A	SACS_uc001uoo.2_Missense_Mutation_p.S450A|SACS_uc001uop.1_Missense_Mutation_p.S384A|SACS_uc001uoq.1_Missense_Mutation_p.S450A	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	597					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGCTTCCCTGAGCTCTGGAGG	0.502													5	60					0	0	1	0	0	
PARP4	143	broad.mit.edu	37	13	25067820	25067820	+	Missense_Mutation	SNP	C	T	T	rs113456081		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:25067820C>T	uc001upl.2	-	8	899	c.793G>A	c.(793-795)GAT>AAT	p.D265N	PARP4_uc010tdc.1_Missense_Mutation_p.D265N	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	265	PARP alpha-helical.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		TCTACTAAATCGCTCACCTCT	0.443													6	56					0	0	1	0	0	
WASF3	10810	broad.mit.edu	37	13	27257105	27257105	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:27257105C>T	uc001uqv.2	+	9	1570	c.1345C>T	c.(1345-1347)CGA>TGA	p.R449*	WASF3_uc001uqw.2_Nonsense_Mutation_p.R446*	NM_006646	NP_006637	Q9UPY6	WASF3_HUMAN	WAS protein family, member 3	449	WH2.				actin filament polymerization	cytoplasm|cytoskeleton	actin binding			pancreas(1)	1	Colorectal(5;0.000247)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0114)|Epithelial(112;0.046)|OV - Ovarian serous cystadenocarcinoma(117;0.0547)|Lung(94;0.105)|LUSC - Lung squamous cell carcinoma(192;0.155)		CGCTGCTATTCGAATGGGTAA	0.567													21	55					0	0	1	0	0	
NBEA	26960	broad.mit.edu	37	13	35733851	35733851	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:35733851T>C	uc001uvb.2	+	23	3749	c.3543T>C	c.(3541-3543)AGT>AGC	p.S1181S	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1181						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TTGGTGTTAGTGATGATCTTG	0.358													8	20					0	0	1	0	0	
FREM2	341640	broad.mit.edu	37	13	39261570	39261570	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:39261570T>G	uc001uwv.2	+	1	398	c.89T>G	c.(88-90)CTG>CGG	p.L30R		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	30					cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCGCCCCGgctgctgctgctg	0.622													3	10					0	0	1	0	0	
MTRF1	9617	broad.mit.edu	37	13	41800599	41800599	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:41800599T>G	uc001uxx.2	-	10	1564	c.1094A>C	c.(1093-1095)AAG>ACG	p.K365T	MTRF1_uc001uxy.2_Missense_Mutation_p.K365T|MTRF1_uc001uxz.2_Missense_Mutation_p.K201T|MTRF1_uc010tff.1_Missense_Mutation_p.K378T|uc001uxv.1_Intron	NM_004294	NP_004285	O75570	RF1M_HUMAN	mitochondrial translational release factor 1	365					regulation of translational termination	mitochondrion	translation release factor activity, codon specific				0		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)|Ovarian(182;0.125)		OV - Ovarian serous cystadenocarcinoma(117;4.24e-10)|all cancers(112;2.05e-09)|Epithelial(112;2.48e-09)|GBM - Glioblastoma multiforme(144;0.00115)|BRCA - Breast invasive adenocarcinoma(63;0.0721)|KIRC - Kidney renal clear cell carcinoma(186;0.248)		TTGCTGACGCTTGTCTTTCTC	0.348													29	51					0	0	1	0	0	
SLC25A30	253512	broad.mit.edu	37	13	45980093	45980093	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:45980093G>A	uc001vag.2	-	4	369	c.232C>T	c.(232-234)CGC>TGC	p.R78C	SLC25A30_uc010tfs.1_Missense_Mutation_p.R3C|SLC25A30_uc001vah.2_Missense_Mutation_p.R3C|SLC25A30_uc010tft.1_Missense_Mutation_p.R27C|SLC25A30_uc001vaf.2_5'Flank	NM_001010875	NP_001010875	Q5SVS4	KMCP1_HUMAN	solute carrier family 25, member 30	78	Helical; Name=2; (Potential).|Solcar 1.				mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding			breast(1)	1		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.95e-05)		GATGCCTGGCGTAACATCGCG	0.478													17	44					0	0	1	0	0	
COG3	83548	broad.mit.edu	37	13	46083848	46083848	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:46083848C>A	uc001vak.2	+	15	1717	c.1616C>A	c.(1615-1617)CCT>CAT	p.P539H	COG3_uc001vaj.1_Missense_Mutation_p.P539H|COG3_uc010tfv.1_Missense_Mutation_p.P376H|COG3_uc010aci.2_Missense_Mutation_p.P315H	NM_031431	NP_113619	Q96JB2	COG3_HUMAN	component of golgi transport complex 3	539					ER to Golgi vesicle-mediated transport|intra-Golgi vesicle-mediated transport|intracellular protein transport|protein glycosylation|protein localization to organelle|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	cis-Golgi network|Golgi cisterna membrane|Golgi transport complex	protein binding|protein transporter activity			breast(1)|skin(1)	2		Lung NSC(96;0.000145)|Breast(56;0.000596)|Prostate(109;0.00438)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000124)		TCCCTCAATCCTAGACCACAG	0.383													63	180					9.25274e-37	1.02396e-36	1	1	0	
PHF11	51131	broad.mit.edu	37	13	50095067	50095067	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:50095067G>A	uc001vdb.2	+	5	833	c.496G>A	c.(496-498)GCT>ACT	p.A166T	PHF11_uc001vdc.2_Missense_Mutation_p.A127T|PHF11_uc001vdd.2_RNA	NM_001040443	NP_001035533	Q9UIL8	PHF11_HUMAN	PHD finger protein 11 isoform a	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.38e-09)		CCCGATCATCGCTCAAAGTGG	0.303													5	45					0	0	1	0	0	
HNRNPA1L2	144983	broad.mit.edu	37	13	53216743	53216743	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:53216743C>T	uc001vgx.1	+	7	1189	c.116C>T	c.(115-117)ACG>ATG	p.T39M	HNRNPA1L2_uc001vgy.1_Missense_Mutation_p.T39M|HNRNPA1L2_uc001vgz.1_Missense_Mutation_p.T39M	NM_001011724	NP_001011724	Q32P51	RA1L2_HUMAN	heterogeneous nuclear ribonucleoprotein A1-like	39	Globular A domain.|RRM 1.				mRNA processing|mRNA transport|RNA splicing	cytoplasm|spliceosomal complex	nucleotide binding|RNA binding				0						CAATGGGGAACGCTCACAGAC	0.512													7	20					0	0	1	0	0	
PCDH17	27253	broad.mit.edu	37	13	58207949	58207949	+	Silent	SNP	G	A	A	rs142073852		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:58207949G>A	uc001vhq.1	+	1	2161	c.1269G>A	c.(1267-1269)ACG>ACA	p.T423T	PCDH17_uc010aec.1_Silent_p.T423T	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	423	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		ACTTCTACACGGTGGTGACTG	0.512													10	16					0	0	1	0	0	
PCDH17	27253	broad.mit.edu	37	13	58208794	58208794	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:58208794C>T	uc001vhq.1	+	1	3006	c.2114C>T	c.(2113-2115)TCG>TTG	p.S705L	PCDH17_uc010aec.1_Missense_Mutation_p.S705L	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	705	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGGGACATGTCGCTGCCGCTC	0.612													14	46					0	0	1	0	0	
KLF5	688	broad.mit.edu	37	13	73636260	73636260	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:73636260A>G	uc001vje.2	+	2	847	c.523A>G	c.(523-525)ACG>GCG	p.T175A	KLF5_uc001vjd.2_Missense_Mutation_p.T84A	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	175					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		CCAGAGTGAAACGACTGCCCC	0.532													12	102					0	0	1	0	0	
TBC1D4	9882	broad.mit.edu	37	13	75873705	75873705	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:75873705T>A	uc001vjl.1	-	17	3264	c.2917A>T	c.(2917-2919)ACG>TCG	p.T973S	TBC1D4_uc010tht.1_Missense_Mutation_p.T183S|TBC1D4_uc010thu.1_Missense_Mutation_p.T130S|TBC1D4_uc010aer.2_Missense_Mutation_p.T965S|TBC1D4_uc010aes.2_Missense_Mutation_p.T910S	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	973	Rab-GAP TBC.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GTAGGAAACGTCCTTCCTGCA	0.433													16	27					0	0	1	0	0	
TBC1D4	9882	broad.mit.edu	37	13	75901921	75901921	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:75901921A>G	uc001vjl.1	-	9	2120	c.1773T>C	c.(1771-1773)AGT>AGC	p.S591S	TBC1D4_uc010aer.2_Silent_p.S591S|TBC1D4_uc010aes.2_Silent_p.S591S	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	591						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		ACCGTTCAAAACTGTCCACAC	0.378													43	94					0	0	1	0	0	
SLITRK1	114798	broad.mit.edu	37	13	84454847	84454847	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:84454847G>A	uc001vlk.2	-	1	1682	c.796C>T	c.(796-798)CGA>TGA	p.R266*		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	266	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GAATCCACTCGGTTTTTCAAA	0.557													5	54					0	0	1	0	0	
DNAJC3	5611	broad.mit.edu	37	13	96375615	96375615	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:96375615A>G	uc001vmq.2	+	3	421	c.313A>G	c.(313-315)ACT>GCT	p.T105A	DNAJC3_uc001vmp.2_Missense_Mutation_p.T105A|DNAJC3_uc001vmr.2_Missense_Mutation_p.T105A	NM_006260	NP_006251	Q13217	DNJC3_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 3	105	TPR 3.				protein folding|response to unfolded protein|response to virus		heat shock protein binding|protein kinase inhibitor activity|unfolded protein binding				0	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.126)			GATGGACTTCACTGCAGTAAG	0.378													12	115					0	0	1	0	0	
IPO5	3843	broad.mit.edu	37	13	98645415	98645415	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:98645415C>T	uc001vnf.1	+	8	914	c.849C>T	c.(847-849)ATC>ATT	p.I283I	IPO5_uc001vne.2_Silent_p.I301I|IPO5_uc010tik.1_Silent_p.I158I|IPO5_uc010til.1_Silent_p.I223I	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	283					interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						TTGAAGTGATCGTCACCCTCT	0.378													11	59					0	0	1	0	0	
RNF113B	140432	broad.mit.edu	37	13	98828582	98828582	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:98828582G>A	uc001vnk.2	-	1	940	c.909C>T	c.(907-909)CCC>CCT	p.P303P	FARP1_uc001vnh.2_Intron|FARP1_uc001vni.2_Intron|FARP1_uc001vnj.2_Intron	NM_178861	NP_849192	Q8IZP6	R113B_HUMAN	ring finger protein 113B	303							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.13)			GTTCTTTGGCGGGGTTAAAGA	0.577													32	78					0	0	1	0	0	
FARP1	10160	broad.mit.edu	37	13	99092225	99092225	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:99092225G>T	uc001vnj.2	+	22	2780	c.2444G>T	c.(2443-2445)AGC>ATC	p.S815I	FARP1_uc001vnh.2_Missense_Mutation_p.S846I	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	815	PH 1.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			ATTGAGGAGAGCGAAGACGAG	0.617													16	308					1.67942e-08	1.79249e-08	1	1	0	
DOCK9	23348	broad.mit.edu	37	13	99567684	99567684	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:99567684C>T	uc001vnt.2	-	8	849	c.794G>A	c.(793-795)AGT>AAT	p.S265N	DOCK9_uc001vnw.2_Missense_Mutation_p.S264N|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.S265N|DOCK9_uc010tis.1_Missense_Mutation_p.S264N|DOCK9_uc010tit.1_Missense_Mutation_p.S265N|DOCK9_uc010afu.1_Missense_Mutation_p.S80N	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	265	PH.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TTCCACTTCACTGTCTGCTGC	0.403													3	37					0	0	1	0	0	
ATP11A	23250	broad.mit.edu	37	13	113470405	113470405	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:113470405C>T	uc001vsi.3	+	6	538	c.450C>T	c.(448-450)GAC>GAT	p.D150D	ATP11A_uc001vsj.3_Silent_p.D150D|ATP11A_uc001vsm.1_Silent_p.D26D	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	150	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				AGGTTGGGGACATTGTCATGG	0.567													19	58					0	0	1	0	0	
TMCO3	55002	broad.mit.edu	37	13	114152698	114152698	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:114152698T>C	uc001vtu.3	+	3	847	c.486T>C	c.(484-486)CAT>CAC	p.H162H	TMCO3_uc001vtt.3_Silent_p.H162H	NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	162	Potential.					integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			CAGAAAAACATCAAGTTGAAG	0.363													5	54					0	0	1	0	0	
RASA3	22821	broad.mit.edu	37	13	114780744	114780744	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:114780744G>C	uc001vui.2	-	14	1477	c.1346C>G	c.(1345-1347)CCG>CGG	p.P449R	RASA3_uc010tkk.1_Missense_Mutation_p.P417R|RASA3_uc001vuj.2_Missense_Mutation_p.P66R	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	449	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CATGACGGTCGGGCAGCTCAC	0.622													4	92					0	0	1	0	0	
RNASE9	390443	broad.mit.edu	37	14	21024951	21024951	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:21024951T>C	uc010aho.2	-	4	437	c.278A>G	c.(277-279)TAC>TGC	p.Y93C	RNASE9_uc001vxq.3_Missense_Mutation_p.Y98C|RNASE9_uc010ahp.2_Missense_Mutation_p.Y98C|RNASE9_uc010ahq.2_Missense_Mutation_p.Y98C|RNASE9_uc010ahr.2_Missense_Mutation_p.Y98C|RNASE9_uc010ahs.2_Missense_Mutation_p.Y93C|RNASE9_uc010aht.2_Missense_Mutation_p.Y93C|RNASE9_uc010ahu.2_Missense_Mutation_p.Y93C	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	93						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		GTGTTTGTAGTAAACATTTTT	0.373													14	144					0	0	1	0	0	
RNASE11	122651	broad.mit.edu	37	14	21052427	21052427	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:21052427A>G	uc010ahv.2	-	2	392	c.207T>C	c.(205-207)GAT>GAC	p.D69D	RNASE11_uc010ahx.2_Silent_p.D69D|RNASE11_uc010ahw.2_Silent_p.D69D|RNASE11_uc001vxs.2_Silent_p.D69D	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	69						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		AAGACATATCATCCTTGGACA	0.388													30	214					0	0	1	0	0	
RPGRIP1	57096	broad.mit.edu	37	14	21769187	21769187	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:21769187C>A	uc001wag.2	+	3	281	c.281C>A	c.(280-282)GCG>GAG	p.A94E		NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	94					response to stimulus|visual perception	cilium		p.H94Y(1)		ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		GCGGAGGAGGCGGCGCCGCTC	0.677													4	37					0.00024832	0.000256562	1	1	0	
RAB2B	84932	broad.mit.edu	37	14	21944741	21944741	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:21944741G>A	uc010tlt.1	-	2	165	c.64C>T	c.(64-66)CTC>TTC	p.L22F	RAB2B_uc010tls.1_5'UTR|RAB2B_uc001wax.2_5'UTR|RAB2B_uc010ain.2_5'UTR|TOX4_uc001way.2_5'Flank|TOX4_uc001waz.2_5'Flank|TOX4_uc001wba.2_5'Flank|TOX4_uc010tlu.1_5'Flank	NM_032846	NP_116235	Q8WUD1	RAB2B_HUMAN	RAB2B protein isoform 1	22					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|plasma membrane	GTP binding			ovary(1)	1	all_cancers(95;0.000858)		Epithelial(56;1.53e-06)|all cancers(55;1.44e-05)	GBM - Glioblastoma multiforme(265;0.00391)		TGCAGGAGGAGACATGACTTC	0.517													35	81					0	0	1	0	0	
LRP10	26020	broad.mit.edu	37	14	23345962	23345962	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23345962G>A	uc001whd.2	+	6	2042	c.1489G>A	c.(1489-1491)GGG>AGG	p.G497R	LRP10_uc001whe.2_Missense_Mutation_p.G373R	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	497	Cytoplasmic (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CCCTTCCTACGGGCAGCTCAT	0.552													9	80					0	0	1	0	0	
CDH24	64403	broad.mit.edu	37	14	23522901	23522901	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23522901G>A	uc001wil.2	-	7	1290	c.1030C>T	c.(1030-1032)CTC>TTC	p.L344F	CDH24_uc010akf.2_Missense_Mutation_p.L344F|CDH24_uc001win.3_Missense_Mutation_p.L344F	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	344	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		GGGTCAATGAGCGTGTTGGTG	0.602													4	32					0	0	1	0	0	
SLC22A17	51310	broad.mit.edu	37	14	23818480	23818480	+	Splice_Site	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23818480C>T	uc001wjl.2	-	3	582	c.526_splice	c.e3+1	p.R176_splice	SLC22A17_uc010akk.2_Splice_Site|SLC22A17_uc001wjn.2_Splice_Site|SLC22A17_uc001wjm.2_Splice_Site_p.R176_splice|SLC22A17_uc010akl.1_Missense_Mutation_p.R176H	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a						siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		GTGCCACTTACGCATCAGGTA	0.617													20	55					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23871975	23871975	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23871975G>A	uc001wjv.2	-	11	1000	c.933C>T	c.(931-933)TAC>TAT	p.Y311Y	MYH6_uc010akp.1_Silent_p.Y311Y	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	311	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ACACGAAGGCGTAGTCGTAGG	0.433													15	43					0	0	1	0	0	
MYH7	4625	broad.mit.edu	37	14	23884267	23884267	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23884267G>A	uc001wjx.2	-	37	5602	c.5496C>T	c.(5494-5496)CGC>CGT	p.R1832R		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1832	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ACTCTGCGTTGCGCTTCTGCT	0.652													5	193					0	0	1	0	0	
MYH7	4625	broad.mit.edu	37	14	23898464	23898464	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:23898464C>T	uc001wjx.2	-	13	1337	c.1231G>A	c.(1231-1233)GTC>ATC	p.V411I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	411	Myosin head-like.		V -> I (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CCCTTGGTGACGTACTCATTG	0.567													47	124					0	0	1	0	0	
LRRC16B	90668	broad.mit.edu	37	14	24523312	24523312	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:24523312C>T	uc001wlj.2	+	3	308	c.151C>T	c.(151-153)CGC>TGC	p.R51C		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	51										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GACCTCCTGGCGCCTCCACCT	0.617													11	52					0	0	1	0	0	
LRRC16B	90668	broad.mit.edu	37	14	24532697	24532697	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:24532697G>T	uc001wlj.2	+	31	3091	c.2934G>T	c.(2932-2934)AGG>AGT	p.R978S	LRRC16B_uc001wlk.2_Missense_Mutation_p.R74S	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	978										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CACAAGGGAGGCCCCGCCCCC	0.597													7	71					1.06961e-07	1.13526e-07	1	1	0	
LRRC16B	90668	broad.mit.edu	37	14	24537831	24537831	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:24537831A>G	uc001wlj.2	+	37	3878	c.3721A>G	c.(3721-3723)AGC>GGC	p.S1241G	LRRC16B_uc001wlk.2_Missense_Mutation_p.S294G|CPNE6_uc010tnv.1_5'Flank|CPNE6_uc001wlm.2_5'Flank|CPNE6_uc001wll.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1241										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CCAGAGTCCCAGCCCAGCCTC	0.582													10	81					0	0	1	0	0	
ADCY4	196883	broad.mit.edu	37	14	24791428	24791428	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:24791428A>G	uc001wov.2	-	20	2436	c.2430T>C	c.(2428-2430)AAT>AAC	p.N810N	ADCY4_uc001wow.2_Silent_p.N810N|ADCY4_uc010toh.1_Silent_p.N496N|ADCY4_uc001wox.2_Silent_p.N810N|ADCY4_uc001woy.2_Silent_p.N810N	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	810	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		AGTAGTACTCATTCTGGGGAG	0.602													10	69					0	0	1	0	0	
FOXG1	2290	broad.mit.edu	37	14	29237305	29237305	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:29237305C>T	uc001wqe.2	+	1	1019	c.820C>T	c.(820-822)CGG>TGG	p.R274W		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	274	Fork-head.			Missing (in Ref. 1; CAA52240 and 2; CAA55038).	axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		GGGCAAGCTGCGGCGCCGCTC	0.701													12	22					0	0	1	0	0	
RALGAPA1	253959	broad.mit.edu	37	14	36147154	36147154	+	Splice_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:36147154G>A	uc001wti.2	-	21	3497	c.3106_splice	c.e21+1	p.E1036_splice	RALGAPA1_uc001wtj.2_Splice_Site_p.E1036_splice|RALGAPA1_uc010tpv.1_Splice_Site_p.E1049_splice|RALGAPA1_uc010tpw.1_Splice_Site_p.E1083_splice|RALGAPA1_uc001wtk.1_Silent_p.G934G	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1						activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						TTGAAATATTGCCTAGATCAT	0.368													20	54					0	0	1	0	0	
BRMS1L	84312	broad.mit.edu	37	14	36302197	36302197	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:36302197C>T	uc001wtl.2	+	3	373	c.247C>T	c.(247-249)CGA>TGA	p.R83*	BRMS1L_uc010tpx.1_Nonsense_Mutation_p.R35*	NM_032352	NP_115728	Q5PSV4	BRM1L_HUMAN	breast cancer metastasis-suppressor 1-like	83	Potential.				regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				skin(1)	1	Breast(36;0.137)|Hepatocellular(127;0.158)		Lung(8;1.7e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.00467)|all cancers(34;0.0157)|BRCA - Breast invasive adenocarcinoma(188;0.158)	GBM - Glioblastoma multiforme(112;0.0333)		TTATAAAGAACGATTAAGTCA	0.323													7	42					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	14	36840675	36840675	+	Silent	SNP	C	T	T	rs151079135	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:36840675C>T	uc001wtp.2	+	1	306	c.57C>T	c.(55-57)ACC>ACT	p.T19T		NM_199286	NP_954980			stella																		AAATGCTCACCGAAGAAAATT	0.473													8	22					0	0	1	0	0	
PAX9	5083	broad.mit.edu	37	14	37132240	37132240	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:37132240T>C	uc001wty.3	+	3	860	c.143T>C	c.(142-144)GTC>GCC	p.V48A	PAX9_uc010amq.2_5'Flank	NM_006194	NP_006185	P55771	PAX9_HUMAN	paired box 9	48	Paired.				multicellular organismal development|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.218)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.00998)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0181)		CAGCTACGGGTCTCGCACGGC	0.662													6	37					0	0	1	0	0	
LRFN5	145581	broad.mit.edu	37	14	42356964	42356964	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:42356964A>G	uc001wvm.2	+	3	2334	c.1136A>G	c.(1135-1137)CAC>CGC	p.H379R	LRFN5_uc010ana.2_Missense_Mutation_p.H379R	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	379	Extracellular (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AAGCTCCCTCACTTACTAAAT	0.398										HNSCC(30;0.082)			9	77					0	0	1	0	0	
KLHL28	54813	broad.mit.edu	37	14	45414264	45414264	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:45414264C>G	uc001wvq.2	-	2	1114	c.868G>C	c.(868-870)GGG>CGG	p.G290R	KLHL28_uc001wvr.2_Missense_Mutation_p.G290R|KLHL28_uc001wvt.3_Missense_Mutation_p.G290R	NM_017658	NP_060128	Q9NXS3	KLH28_HUMAN	BTB (POZ) domain containing 5	290	Kelch 1.									ovary(1)	1						CCAGATTTCCCTCCTACTGCA	0.403													7	108					0	0	1	0	0	
FANCM	57697	broad.mit.edu	37	14	45645243	45645243	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:45645243C>T	uc001wwd.3	+	14	3385	c.3286C>T	c.(3286-3288)CCT>TCT	p.P1096S	FANCM_uc010anf.2_Missense_Mutation_p.P1070S|FANCM_uc001wwe.3_Missense_Mutation_p.P632S|FANCM_uc010ang.2_Missense_Mutation_p.P310S	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1096					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AAATTTAGTACCTAACAATCG	0.348								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				5	49					0	0	1	0	0	
MDGA2	161357	broad.mit.edu	37	14	47342767	47342767	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:47342767C>T	uc001wwj.3	-	14	2610	c.2414G>A	c.(2413-2415)CGA>CAA	p.R805Q	MDGA2_uc001wwh.3_Missense_Mutation_p.R7Q|MDGA2_uc001wwi.3_Missense_Mutation_p.R576Q|MDGA2_uc010ani.2_Missense_Mutation_p.R365Q	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	805	MAM.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						CAATCTGGGTCGTGATGTCTC	0.378													8	76					0	0	1	0	0	
ABHD12B	145447	broad.mit.edu	37	14	51355547	51355547	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:51355547C>A	uc001wys.2	+	9	721	c.706C>A	c.(706-708)CCA>ACA	p.P236T	ABHD12B_uc001wyq.2_Missense_Mutation_p.P129T|ABHD12B_uc001wyr.2_Missense_Mutation_p.P159T|ABHD12B_uc010any.2_RNA	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	236							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					TCAAGGATGCCCAGTTGATGC	0.353													3	62					6.4e-05	6.65405e-05	1	1	0	
TRIM9	114088	broad.mit.edu	37	14	51561493	51561493	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:51561493G>A	uc001wyx.3	-	1	930	c.165C>T	c.(163-165)TCC>TCT	p.S55S	TRIM9_uc001wyy.2_Silent_p.S55S|TRIM9_uc001wyz.3_Silent_p.S55S	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	55					proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					CGGAGACCCCGGAGCCCGCGG	0.642													4	16					0	0	1	0	0	
WDHD1	11169	broad.mit.edu	37	14	55429711	55429711	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:55429711C>T	uc001xbm.1	-	19	2568	c.2490G>A	c.(2488-2490)GAG>GAA	p.E830E	WDHD1_uc010aom.1_Silent_p.E347E|WDHD1_uc001xbn.1_Silent_p.E707E	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	830	Glu-rich (acidic).					cytoplasm|nucleoplasm	DNA binding			skin(1)	1						cttcttcttcctcttcCACCT	0.333													4	15					0	0	1	0	0	
PSMA3	5684	broad.mit.edu	37	14	58734211	58734211	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:58734211G>A	uc001xdj.1	+	8	609	c.563G>A	c.(562-564)CGT>CAT	p.R188H	C14orf37_uc010tro.1_Intron|PSMA3_uc001xdk.1_Missense_Mutation_p.R181H|uc001xdl.2_Intron	NM_002788	NP_002779	P25788	PSA3_HUMAN	proteasome alpha 3 subunit isoform 1	188					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	protein binding|threonine-type endopeptidase activity				0						ATGACCTGCCGTGATATCGTT	0.274													11	62					0	0	1	0	0	
TOMM20L	387990	broad.mit.edu	37	14	58863027	58863027	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:58863027G>A	uc001xdr.1	+	2	180	c.148G>A	c.(148-150)GAG>AAG	p.E50K	TOMM20L_uc010trq.1_RNA	NM_207377	NP_997260	Q6UXN7	TO20L_HUMAN	translocase of outer mitochondrial membrane 20	50	Cytoplasmic (Potential).				protein targeting	integral to membrane|mitochondrial outer membrane translocase complex					0						AAGAAGAGCAGAGCCTCAAAA	0.662													4	39					0	0	1	0	0	
WDR89	112840	broad.mit.edu	37	14	64066595	64066595	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:64066595C>T	uc001xgh.2	-	3	312	c.66G>A	c.(64-66)GAG>GAA	p.E22E	WDR89_uc001xgi.2_Silent_p.E22E	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	22	WD 1.										0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		GGTAAGTGGGCTCTTTGGTTC	0.383													14	66					0	0	1	0	0	
SYNE2	23224	broad.mit.edu	37	14	64408821	64408821	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:64408821T>G	uc001xgm.2	+	6	598	c.368T>G	c.(367-369)ATT>AGT	p.I123S	SYNE2_uc001xgk.2_Missense_Mutation_p.I123S|SYNE2_uc001xgl.2_Missense_Mutation_p.I123S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	123	CH 1.|Cytoplasmic (Potential).|Actin-binding.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AACCCATCCATTATCCTTGGC	0.313													7	62					0	0	1	0	0	
HSPA2	3306	broad.mit.edu	37	14	65008911	65008911	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:65008911C>T	uc001xhj.2	+	2	1420	c.1344C>T	c.(1342-1344)GGC>GGT	p.G448G	HSPA2_uc001xhk.3_Silent_p.G448G	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	448					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		TATACGAGGGCGAACGGGCCA	0.597													7	101					0	0	1	0	0	
SIPA1L1	26037	broad.mit.edu	37	14	72152299	72152299	+	Missense_Mutation	SNP	G	A	A	rs113469231		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:72152299G>A	uc001xms.2	+	10	3673	c.3325G>A	c.(3325-3327)GCC>ACC	p.A1109T	SIPA1L1_uc001xmt.2_Missense_Mutation_p.A1109T|SIPA1L1_uc001xmu.2_Missense_Mutation_p.A1109T|SIPA1L1_uc001xmv.2_Missense_Mutation_p.A1109T|SIPA1L1_uc010ttm.1_Missense_Mutation_p.A584T	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1109					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		AGAAAGAGCCGCCAACATCCC	0.562													6	62					0	0	1	0	0	
PAPLN	89932	broad.mit.edu	37	14	73730973	73730973	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:73730973C>T	uc010ttx.1	+	20	3079	c.2916C>T	c.(2914-2916)GAC>GAT	p.D972D	PAPLN_uc001xnw.3_Silent_p.D945D|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Silent_p.D956D|PAPLN_uc010arm.2_Silent_p.D171D|PAPLN_uc010arn.2_Silent_p.D172D	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	972	Ig-like C2-type 1.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		AGGCAGAGGACGCGGGCACCT	0.647													32	99					0	0	1	0	0	
DLST	1743	broad.mit.edu	37	14	75361105	75361105	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:75361105G>A	uc001xqv.2	+	10	826	c.763G>A	c.(763-765)GAC>AAC	p.D255N	DLST_uc001xqu.2_Missense_Mutation_p.D167N|DLST_uc001xqt.2_Missense_Mutation_p.D171N|DLST_uc010tuw.1_Missense_Mutation_p.D169N|DLST_uc001xqs.2_RNA|DLST_uc010tuv.1_Missense_Mutation_p.D255N	NM_001933	NP_001924	P36957	ODO2_HUMAN	dihydrolipoamide S-succinyltransferase (E2	255					lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleus	dihydrolipoyllysine-residue succinyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00698)		TAATGAGATTGACATGAGGTA	0.453													12	134					0	0	1	0	0	
ISM2	145501	broad.mit.edu	37	14	77942332	77942332	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:77942332G>T	uc001xtz.2	-	7	1396	c.1322C>A	c.(1321-1323)CCT>CAT	p.P441H	ISM2_uc001xua.2_3'UTR|ISM2_uc001xty.2_Missense_Mutation_p.P353H|ISM2_uc010tvl.1_Missense_Mutation_p.P360H	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	441	AMOP.					extracellular region				skin(1)	1						TAGGCTCACAGGGCTGTCCAT	0.647													5	53					1	1	1	1	0	
NRXN3	9369	broad.mit.edu	37	14	80328033	80328033	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:80328033G>A	uc001xun.2	+	17	3403	c.2912G>A	c.(2911-2913)CGG>CAG	p.R971Q	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Missense_Mutation_p.R547Q|NRXN3_uc010asw.2_Missense_Mutation_p.R369Q|NRXN3_uc001xur.3_Missense_Mutation_p.R342Q	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1553	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGAATCAGACGGGTTCCGGGG	0.592													14	39					0	0	1	0	0	
DIO2	1734	broad.mit.edu	37	14	80669184	80669184	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:80669184C>T	uc010tvq.1	-	4	1072	c.670G>A	c.(670-672)GGG>AGG	p.G224R	DIO2_uc010tvp.1_Missense_Mutation_p.G260R|DIO2_uc001xut.2_RNA|DIO2_uc010asx.2_3'UTR|DIO2_uc010tvr.1_Missense_Mutation_p.G224R|DIO2_uc010asy.2_3'UTR	NM_000793	NP_000784	Q92813	IOD2_HUMAN	deiodinase, iodothyronine, type II isoform a	224					hormone biosynthetic process|selenocysteine incorporation|thyroid hormone generation	integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|ubiquitin protein ligase binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0281)		AAGGCTACCCCGTAAGCTATG	0.542													19	45					0	0	1	0	0	
PTPN21	11099	broad.mit.edu	37	14	88946663	88946663	+	Missense_Mutation	SNP	T	C	C	rs141723672		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:88946663T>C	uc001xwv.3	-	13	1443	c.1112A>G	c.(1111-1113)TAC>TGC	p.Y371C	PTPN21_uc010twc.1_Missense_Mutation_p.Y167C	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	371						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						AGAGTGACAGTAGTATCCGTT	0.413													6	72					0	0	1	0	0	
FOXN3	1112	broad.mit.edu	37	14	89878421	89878421	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:89878421G>A	uc001xxo.3	-	2	537	c.400C>T	c.(400-402)CGC>TGC	p.R134C	FOXN3_uc001xxn.3_Missense_Mutation_p.R134C|FOXN3_uc010atk.2_Missense_Mutation_p.R134C|FOXN3_uc001xxp.2_Missense_Mutation_p.R134C	NM_001085471	NP_001078940	O00409	FOXN3_HUMAN	checkpoint suppressor 1 isoform 1	134	Fork-head.				DNA damage checkpoint|embryo development|G2 phase of mitotic cell cycle|negative regulation of transcription, DNA-dependent|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein C-terminus binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(2)|ovary(1)	3						ACTGGCAGGCGCTTGGTTGGA	0.488													15	107					0	0	1	0	0	
SMEK1	55671	broad.mit.edu	37	14	91925133	91925133	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:91925133T>C	uc001xzn.2	-	15	3294	c.2472A>G	c.(2470-2472)CCA>CCG	p.P824P	SMEK1_uc001xzm.2_Silent_p.P811P|SMEK1_uc001xzo.2_Silent_p.P811P|SMEK1_uc010atz.2_Silent_p.P585P	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	824						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		TCTTTGACAATGGTAACGTAT	0.343													10	71					0	0	1	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94103591	94103591	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:94103591A>G	uc001ybv.1	+	31	5481	c.5398A>G	c.(5398-5400)AAC>GAC	p.N1800D	KIAA1409_uc001ybs.1_Missense_Mutation_p.N1778D	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1955						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		acgccagtgtaacgtgccaac	0.005													6	59					0	0	1	0	0	
DICER1	23405	broad.mit.edu	37	14	95562378	95562378	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:95562378C>T	uc001ydw.2	-	24	5061	c.4879G>A	c.(4879-4881)GCC>ACC	p.A1627T	DICER1_uc010avh.1_Missense_Mutation_p.A525T|DICER1_uc001ydv.2_Missense_Mutation_p.A1617T|DICER1_uc001ydx.2_Missense_Mutation_p.A1627T|DICER1_uc001ydy.1_Missense_Mutation_p.A479T	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1627					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		CGTGAACTGGCCACAGAAGCA	0.438			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				34	278					0	0	1	0	0	
CLMN	79789	broad.mit.edu	37	14	95679626	95679626	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:95679626C>T	uc001yef.2	-	6	654	c.538G>A	c.(538-540)GCA>ACA	p.A180T		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	180	Actin-binding.					integral to membrane	actin binding				0				Epithelial(152;0.193)		ACCGATATTGCCACGCTCCTC	0.577													9	86					0	0	1	0	0	
SETD3	84193	broad.mit.edu	37	14	99872896	99872896	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:99872896C>T	uc001ygc.2	-	9	1051	c.881G>A	c.(880-882)CGC>CAC	p.R294H		NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	294	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				ACACTCACAGCGGTCATCTTC	0.522													24	52					0	0	1	0	0	
WARS	7453	broad.mit.edu	37	14	100801346	100801346	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:100801346C>T	uc001yhf.1	-	10	1366	c.1282G>A	c.(1282-1284)GGT>AGT	p.G428S	WARS_uc001yhe.1_Missense_Mutation_p.G234S|WARS_uc001yhg.1_Missense_Mutation_p.G428S|WARS_uc001yhh.1_Missense_Mutation_p.G428S|WARS_uc001yhi.1_Missense_Mutation_p.G387S|WARS_uc001yhj.1_Missense_Mutation_p.G387S|WARS_uc001yhk.1_Missense_Mutation_p.G387S|WARS_uc001yhl.1_Missense_Mutation_p.G428S	NM_173701	NP_776049	P23381	SYWC_HUMAN	tryptophanyl-tRNA synthetase isoform a	428					angiogenesis|negative regulation of cell proliferation|regulation of angiogenesis|tryptophanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|protein binding|tryptophan-tRNA ligase activity			breast(1)	1		all_cancers(154;0.00223)|all_lung(585;2.48e-06)|all_epithelial(191;0.000564)|Melanoma(154;0.152)			L-Tryptophan(DB00150)	TTGAGCTCACCGGTGAGCATG	0.597													8	54					0	0	1	0	0	
SNORD113-2	767562	broad.mit.edu	37	14	101393683	101393683	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:101393683C>T	uc001yij.2	+	1		c.5C>T				NR_003230				Homo sapiens small nucleolar RNA, C/D box 113-2 (SNORD113-2), non-coding RNA.												0						TCAAGTATAGCCAATCATTAG	0.279													4	50					0	0	1	0	0	
PPP2R5C	5527	broad.mit.edu	37	14	102359431	102359431	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:102359431G>A	uc001yko.2	+	7	924	c.784G>A	c.(784-786)GTC>ATC	p.V262I	PPP2R5C_uc010txr.1_Missense_Mutation_p.V293I|PPP2R5C_uc001ykk.2_Missense_Mutation_p.V317I|PPP2R5C_uc010txt.1_Missense_Mutation_p.V252I|PPP2R5C_uc001ykn.2_Missense_Mutation_p.V262I|PPP2R5C_uc001ykp.2_Missense_Mutation_p.V262I|PPP2R5C_uc001ykq.2_Missense_Mutation_p.V160I	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	262					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						ATCTCTGAGTGTCTACCATCC	0.423													4	46					0	0	1	0	0	
WDR20	91833	broad.mit.edu	37	14	102676020	102676020	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:102676020C>A	uc001ykz.2	+	3	1562	c.1513C>A	c.(1513-1515)CCT>ACT	p.P505T	WDR20_uc001yky.1_Missense_Mutation_p.P248T|WDR20_uc001yla.2_Missense_Mutation_p.P381T|WDR20_uc001ylb.2_Missense_Mutation_p.P444T|WDR20_uc010txu.1_Missense_Mutation_p.P536T|WDR20_uc001ylc.2_Intron|WDR20_uc001yld.2_Missense_Mutation_p.P505T|WDR20_uc001yle.2_Missense_Mutation_p.P444T|WDR20_uc001ylf.2_Missense_Mutation_p.P517T	NM_144574	NP_653175	Q8TBZ3	WDR20_HUMAN	WD repeat domain 20 isoform 2	505											0						CAAAACGGACCCTGCTAAAAC	0.458											OREG0022939	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	90					0.00198382	0.00202401	1	1	0	
RAGE	5891	broad.mit.edu	37	14	102717229	102717229	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:102717229C>T	uc001ylm.2	-	7	736	c.510G>A	c.(508-510)CCG>CCA	p.P170P	RAGE_uc010txv.1_Silent_p.P140P|RAGE_uc001yln.2_5'UTR	NM_014226	NP_055041	Q9UQ07	MOK_HUMAN	MAPK/MAK/MRK overlapping kinase	170	Protein kinase.				signal transduction	Golgi apparatus	ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						GGAGACACTCCGGGGCCCGGT	0.587													9	110					0	0	1	0	0	
KIAA0284	283638	broad.mit.edu	37	14	105350360	105350360	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:105350360G>A	uc010axb.2	+	9	1468	c.1244G>A	c.(1243-1245)CGA>CAA	p.R415Q	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.R345Q|KIAA0284_uc001yps.2_Missense_Mutation_p.R321Q	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	415						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GACACACCCCGAAAGAAGCGC	0.652													5	18					0	0	1	0	0	
JAG2	3714	broad.mit.edu	37	14	105622217	105622217	+	Silent	SNP	G	A	A	rs139004148		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:105622217G>A	uc001yqg.2	-	4	989	c.585C>T	c.(583-585)CGC>CGT	p.R195R	JAG2_uc001yqh.2_Silent_p.R195R	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	195	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		CGCAGCGCACGCGGATCTGCA	0.622													5	16					0	0	1	0	0	
BRF1	2972	broad.mit.edu	37	14	105693007	105693007	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:105693007C>T	uc001yqp.2	-	8	1242	c.879G>A	c.(877-879)TCG>TCA	p.S293S	BRF1_uc010tyo.1_Silent_p.S178S|BRF1_uc010typ.1_Silent_p.S178S|BRF1_uc001yql.2_Silent_p.S89S|BRF1_uc001yqo.2_Silent_p.S55S|BRF1_uc010axg.1_Silent_p.S266S|BRF1_uc001yqn.2_RNA|BRF1_uc010axh.1_RNA|BRF1_uc010axj.1_RNA	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	293					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		CAGCTGTGTACGAGGGGGGGT	0.582													29	75					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106091026	106091026	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:106091026G>A	uc010tyt.1	-	3648		c.62385C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						ACTCCACGGCGATGTCGCTGG	0.612													17	200					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106173670	106173670	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:106173670G>A	uc010tyt.1	-	3633		c.60228C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						CGGCTGCCACGCGCAGTATGC	0.657													9	70					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	106667652	106667652	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:106667652C>T	uc010tyt.1	-	877		c.22213G>A								Parts of antibodies, mostly variable regions.												0						GAGTTCTTGGCGTTGTCTCTG	0.537													64	203					0	0	1	0	0	
ADAM6	8755	broad.mit.edu	37	14	107062359	107062359	+	RNA	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:107062359G>T	uc010tyt.1	-	131		c.6236C>A								Parts of antibodies, mostly variable regions.												0						AGACAGCGCAGATGAGGGACA	0.607													4	48					0.00198382	0.00202401	1	1	0	
ADAM6	8755	broad.mit.edu	37	14	107282974	107282974	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:107282974G>A	uc010tyt.1	-	2		c.92C>T			uc001ytb.1_Missense_Mutation_p.P57S					Parts of antibodies, mostly variable regions.												0						GGGGCCTGTGGCACCCAATTC	0.557													17	115					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	15	20496632	20496632	+	RNA	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:20496632A>G	uc001ytf.1	+	6		c.685A>G								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		ATGAAGGGGAAGCCGAGGGTG	0.438													3	76					0	0	1	0	0	
CYFIP1	23191	broad.mit.edu	37	15	22928165	22928165	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:22928165A>G	uc001yus.2	+	4	348	c.244A>G	c.(244-246)ATG>GTG	p.M82V	CYFIP1_uc001yut.2_Missense_Mutation_p.M82V|CYFIP1_uc010aya.1_Missense_Mutation_p.M110V	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	82					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ATATGCTGTCATGCTGTACAC	0.612													46	127					0	0	1	0	0	
HERC2P2	400322	broad.mit.edu	37	15	23330043	23330043	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:23330043T>C	uc001yvr.2	-	9	1235	c.1035A>G	c.(1033-1035)ATA>ATG	p.I345M	HERC2P2_uc010ayf.1_Intron					RecName: Full=Putative HERC2-like protein 3;												0						ACTTAGACATTATAGAGAGGT	0.398													4	39					0	0	1	0	0	
MAGEL2	54551	broad.mit.edu	37	15	23889660	23889660	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:23889660A>G	uc001ywj.3	-	1	1516	c.1421T>C	c.(1420-1422)TTG>TCG	p.L474S		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		AATTTCTTTCAATTGATAACC	0.418													10	24					0	0	1	0	0	
NDN	4692	broad.mit.edu	37	15	23932112	23932112	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:23932112C>T	uc001ywk.2	-	1	339	c.253G>A	c.(253-255)GCG>ACG	p.A85T		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	85					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		GGCTGGGCCGCGCTCGGGGCC	0.741									Prader-Willi_syndrome				6	7					0	0	1	0	0	
ATP10A	57194	broad.mit.edu	37	15	25971230	25971230	+	Splice_Site	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:25971230C>A	uc010ayu.2	-	5	954	c.848_splice	c.e5-1	p.G283_splice		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A						ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GTTTCATGTCCTGTCGGGGAG	0.572													4	55					0.150653	0.151361	1	1	0	
GABRA5	2558	broad.mit.edu	37	15	27160004	27160004	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:27160004G>A	uc001zbd.1	+	8	891	c.552G>A	c.(550-552)GCG>GCA	p.A184A	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	184	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CGATGGATGCGCACGCTTGCC	0.438													3	50					0	0	1	0	0	
HERC2	8924	broad.mit.edu	37	15	28514464	28514464	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:28514464G>A	uc001zbj.2	-	11	1482	c.1376C>T	c.(1375-1377)GCA>GTA	p.A459V	HERC2_uc001zbl.1_Missense_Mutation_p.A154V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	459					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACGCTTCTCTGCACAGGCAAT	0.522													10	37					0	0	1	0	0	
TRPM1	4308	broad.mit.edu	37	15	31332410	31332410	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:31332410G>A	uc001zfm.2	-	17	2289	c.2161C>T	c.(2161-2163)CGG>TGG	p.R721W	TRPM1_uc010azy.2_Missense_Mutation_p.R628W|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	721	Cytoplasmic (Potential).		R -> Q (in CSNB1C).		cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		ATGAAGTCCCGGTGTTTGGCT	0.557													26	76					0	0	1	0	0	
RYR3	6263	broad.mit.edu	37	15	34123231	34123231	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:34123231A>T	uc001zhi.2	+	86	11472	c.11402A>T	c.(11401-11403)AAT>ATT	p.N3801I	RYR3_uc010bar.2_Missense_Mutation_p.N3796I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3801					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GGACAGCACAATTTTTCCAAA	0.378													12	38					0	0	1	0	0	
AVEN	57099	broad.mit.edu	37	15	34168182	34168182	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:34168182G>A	uc001zhj.2	-	3	516	c.460C>T	c.(460-462)CAG>TAG	p.Q154*		NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	154					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		AACCGGAACTGTGAGAATGAG	0.408													16	35					0	0	1	0	0	
AVEN	57099	broad.mit.edu	37	15	34295366	34295366	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:34295366A>G	uc001zhj.2	-	2	368	c.312T>C	c.(310-312)GAT>GAC	p.D104D	CHRM5_uc001zhk.1_Intron	NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	104					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		TTCCCTGTTCATCATTCTCTT	0.383													12	23					0	0	1	0	0	
ZNF770	54989	broad.mit.edu	37	15	35273567	35273567	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:35273567A>G	uc001ziw.2	-	3	2380	c.2069T>C	c.(2068-2070)GTT>GCT	p.V690A		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	690					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		AATTTACATAACCGAATCTAA	0.383													4	19					0	0	1	0	0	
MEIS2	4212	broad.mit.edu	37	15	37388529	37388529	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:37388529G>A	uc001zjr.2	-	3	1385	c.348C>T	c.(346-348)TCC>TCT	p.S116S	MEIS2_uc001zjl.2_Silent_p.S103S|MEIS2_uc010ucj.1_Silent_p.S103S|MEIS2_uc001zjm.2_Silent_p.S28S|MEIS2_uc001zjn.2_Intron|MEIS2_uc001zjo.2_Silent_p.S116S|MEIS2_uc001zjp.2_Silent_p.S116S|MEIS2_uc001zjs.2_Silent_p.S116S|MEIS2_uc001zju.2_Silent_p.S103S|MEIS2_uc001zjt.2_Silent_p.S116S	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	116					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		TGAAGGAGTCGGAGGAGCAGA	0.602													5	24					0	0	1	0	0	
MEIS2	4212	broad.mit.edu	37	15	37390178	37390178	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:37390178C>T	uc001zjr.2	-	2	1272	c.235G>A	c.(235-237)GCG>ACG	p.A79T	MEIS2_uc001zjl.2_Missense_Mutation_p.A66T|MEIS2_uc010ucj.1_Missense_Mutation_p.A66T|MEIS2_uc001zjm.2_5'UTR|MEIS2_uc001zjn.2_5'UTR|MEIS2_uc001zjo.2_Missense_Mutation_p.A79T|MEIS2_uc001zjp.2_Missense_Mutation_p.A79T|MEIS2_uc001zjs.2_Missense_Mutation_p.A79T|MEIS2_uc001zju.2_Missense_Mutation_p.A66T|MEIS2_uc001zjt.2_Missense_Mutation_p.A79T	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	79					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		CCATAGATCGCGTCCTTGTCC	0.607													9	37					0	0	1	0	0	
THBS1	7057	broad.mit.edu	37	15	39881276	39881276	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:39881276G>T	uc001zkh.2	+	11	1941	c.1762G>T	c.(1762-1764)GAT>TAT	p.D588Y	THBS1_uc010bbi.2_Missense_Mutation_p.D60Y	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	588	EGF-like 2; calcium-binding (Potential).				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CCAGTGCACAGATGTTGATGA	0.517													30	73					5.91797e-21	6.49876e-21	1	1	0	
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42126983	42126983	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:42126983C>G	uc001zoo.3	+	2	150	c.110C>G	c.(109-111)ACT>AGT	p.T37S	JMJD7-PLA2G4B_uc010bcm.1_RNA|JMJD7-PLA2G4B_uc001zom.2_Intron|JMJD7-PLA2G4B_uc001zon.2_Missense_Mutation_p.T37S|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.T37S|JMJD7-PLA2G4B_uc001zop.1_5'UTR|JMJD7-PLA2G4B_uc001zoq.3_5'Flank	NM_005090	NP_005081	P0C869	PA24B_HUMAN	JMJD7-PLA2G4B protein	Error:Variant_position_missing_in_P0C869_after_alignment					arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						AAACCCCCAACTCCGCTCCAC	0.617													13	132					0	0	1	0	0	
CDAN1	146059	broad.mit.edu	37	15	43020419	43020419	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:43020419C>A	uc001zql.2	-	21	2968	c.2851G>T	c.(2851-2853)GAG>TAG	p.E951*	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Nonsense_Mutation_p.E277*	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	951						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		GGGGTCTCCTCTGGAAGCAGC	0.627													11	96					0.000978159	0.00100216	1	1	0	
TGM7	116179	broad.mit.edu	37	15	43585733	43585733	+	Missense_Mutation	SNP	C	T	T	rs150218635	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:43585733C>T	uc001zrf.1	-	2	112	c.107G>A	c.(106-108)CGC>CAC	p.R36H		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	36					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CTGGCCGCGGCGCACAGTGAG	0.617													61	48					0	0	1	0	0	
B2M	567	broad.mit.edu	37	15	45003812	45003812	+	Splice_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:45003812G>A	uc001zuc.2	+	1	127	c.67_splice	c.e1+1	p.R23_splice	B2M_uc010uek.1_Splice_Site_p.R23_splice|B2M_uc010bdx.1_Splice_Site_p.R23_splice	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor						antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GCTATCCAGCGTGAGTCTCTC	0.617													64	36					0	0	1	0	0	
DUOX2	50506	broad.mit.edu	37	15	45392026	45392026	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:45392026T>C	uc010bea.2	-	25	3452	c.3249A>G	c.(3247-3249)TCA>TCG	p.S1083S	DUOX2_uc001zun.2_Silent_p.S1083S	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1083	Interaction with TXNDC11 (By similarity).|Helical; (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCGTGCCTCGTGACAGGATGA	0.572													9	62					0	0	1	0	0	
DMXL2	23312	broad.mit.edu	37	15	51773773	51773773	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:51773773G>T	uc002abf.2	-	24	5755	c.5530C>A	c.(5530-5532)CTT>ATT	p.L1844I	DMXL2_uc002abd.2_5'UTR|DMXL2_uc010ufy.1_Missense_Mutation_p.L1844I|DMXL2_uc010bfa.2_Missense_Mutation_p.L1208I	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1844						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TGAGTTCGAAGGTAGTTATAA	0.348													28	24					6.38683e-12	6.9248e-12	1	1	0	
KIAA1370	56204	broad.mit.edu	37	15	52897418	52897418	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:52897418A>G	uc002acg.3	-	7	2525	c.2372T>C	c.(2371-2373)GTG>GCG	p.V791A	KIAA1370_uc002ach.3_RNA|KIAA1370_uc010bfg.1_Missense_Mutation_p.V703A|KIAA1370_uc010ugf.1_Missense_Mutation_p.V798A	NM_019600	NP_062546	Q32MH5	K1370_HUMAN	hypothetical protein LOC56204	791											0				all cancers(107;0.0803)		TTTTCGCCACACATTTGAATG	0.333													15	135					0	0	1	0	0	
WDR72	256764	broad.mit.edu	37	15	53994441	53994441	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:53994441G>T	uc002acj.2	-	12	1501	c.1459C>A	c.(1459-1461)CTG>ATG	p.L487M	WDR72_uc010bfi.1_Missense_Mutation_p.L487M	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	487	WD 6.							p.L487L(1)		lung(1)|skin(1)	2				all cancers(107;0.0511)		CATGAGTCCAGGTCCCCAGAC	0.398													12	139					0.010729	0.0108751	1	1	0	
ZNF280D	54816	broad.mit.edu	37	15	56959098	56959098	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:56959098G>T	uc002adu.2	-	15	1849	c.1632C>A	c.(1630-1632)CTC>CTA	p.L544L	ZNF280D_uc002adv.2_Silent_p.L531L|ZNF280D_uc010bfq.2_Silent_p.L544L|ZNF280D_uc002adw.1_Silent_p.L572L|ZNF280D_uc010bfr.1_RNA|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	544				L -> P (in Ref. 3; BAA90940).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		TTGGAGGTGAGAGCTGAAGGG	0.383													3	34					0.115264	0.116009	1	1	0	
HERC1	8925	broad.mit.edu	37	15	63953190	63953190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:63953190G>A	uc002amp.2	-	46	9353	c.9205C>T	c.(9205-9207)CAA>TAA	p.Q3069*		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	3069					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						ACACTGTCTTGCTTGCCAATT	0.338													4	68					0	0	1	0	0	
RBPMS2	348093	broad.mit.edu	37	15	65040633	65040633	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:65040633G>A	uc002anq.2	-	6	804	c.552C>T	c.(550-552)GCC>GCT	p.A184A		NM_194272	NP_919248	Q6ZRY4	RBPS2_HUMAN	RNA binding protein with multiple splicing 2	184							nucleic acid binding|nucleotide binding				0						CGTGGAGGGCGGCGGCAGCGG	0.637													7	60					0	0	1	0	0	
UACA	55075	broad.mit.edu	37	15	70960242	70960242	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:70960242C>T	uc002asr.2	-	16	2885	c.2781G>A	c.(2779-2781)GAG>GAA	p.E927E	UACA_uc010uke.1_Silent_p.E818E|UACA_uc002asq.2_Silent_p.E914E|UACA_uc010bin.1_Silent_p.E902E	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	927	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						TTGCCTCGTGCTCTGCCAGGC	0.388													10	61					0	0	1	0	0	
PKM2	5315	broad.mit.edu	37	15	72502688	72502688	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:72502688G>A	uc002atx.1	-	4	619	c.378C>T	c.(376-378)GGC>GGT	p.G126G	PKM2_uc002att.1_5'Flank|PKM2_uc002atu.1_5'Flank|PKM2_uc010bit.1_Silent_p.G131G|PKM2_uc010uki.1_Silent_p.G200G|PKM2_uc002atv.1_Silent_p.G161G|PKM2_uc002atw.1_Silent_p.G126G|PKM2_uc002aty.1_Silent_p.G126G|PKM2_uc010ukj.1_Silent_p.G111G|PKM2_uc010ukk.1_Intron|PKM2_uc010biu.1_Silent_p.G147G|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	126					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	GAATACTCACGCCCTTGATGA	0.557													14	224					0	0	1	0	0	
ISLR2	57611	broad.mit.edu	37	15	74425583	74425583	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:74425583C>T	uc002axd.2	+	4	1257	c.488C>T	c.(487-489)GCG>GTG	p.A163V	ISLR2_uc002axe.2_Missense_Mutation_p.A163V|ISLR2_uc010bjg.2_Missense_Mutation_p.A163V|ISLR2_uc010bjf.2_Missense_Mutation_p.A163V	NM_001130136	NP_001123608	Q6UXK2	ISLR2_HUMAN	immunoglobulin superfamily containing	163	Extracellular (Potential).|LRR 5.				positive regulation of axon extension	cell surface|integral to membrane|plasma membrane					0						CGTACGCTGGCGCCTGGCACC	0.652													5	65					0	0	1	0	0	
LMAN1L	79748	broad.mit.edu	37	15	75117889	75117889	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:75117889C>A	uc002ayt.1	+	14	1526	c.1524C>A	c.(1522-1524)ACC>ACA	p.T508T	LMAN1L_uc010bke.1_Silent_p.T496T|CPLX3_uc002ayu.1_5'Flank	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	508	Cytoplasmic (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CACCACACACCCCCAGGGCCC	0.612													86	53					1.99054e-24	2.19151e-24	1	1	0	
PTPN9	5780	broad.mit.edu	37	15	75763086	75763086	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:75763086T>C	uc002bal.2	-	11	1802	c.1294A>G	c.(1294-1296)ACC>GCC	p.T432A		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	432	Tyrosine-protein phosphatase.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						CCTAGATTGGTCACTGTGAGG	0.438													12	107					0	0	1	0	0	
SNUPN	10073	broad.mit.edu	37	15	75890977	75890977	+	Missense_Mutation	SNP	C	T	T	rs138384328	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:75890977C>T	uc002ban.2	-	9	895	c.805G>A	c.(805-807)GGA>AGA	p.G269R	SNUPN_uc002bao.2_Missense_Mutation_p.G269R|SNUPN_uc002bap.2_Missense_Mutation_p.G311R|SNUPN_uc002baq.2_Missense_Mutation_p.G269R|SNUPN_uc002bar.2_Missense_Mutation_p.G269R|SNUPN_uc002bas.2_Missense_Mutation_p.G269R	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	269	Necessary for binding to the m3G-cap structure.				ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						GGAGTGCTTCCGGGGCTGTAG	0.552													14	203					0	0	1	0	0	
MORF4L1	10933	broad.mit.edu	37	15	79170560	79170560	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:79170560C>T	uc002bel.2	+	2	234	c.46C>T	c.(46-48)CGA>TGA	p.R16*	MORF4L1_uc010bli.1_Nonsense_Mutation_p.R16*|MORF4L1_uc010blj.1_Nonsense_Mutation_p.R16*|MORF4L1_uc002bem.2_Nonsense_Mutation_p.R16*|MORF4L1_uc010une.1_5'UTR	NM_206839	NP_996670	Q9UBU8	MO4L1_HUMAN	MORF-related gene 15 isoform 2	16					double-strand break repair via homologous recombination|histone deacetylation|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Sin3 complex	protein N-terminus binding				0						TACAGGTGAGCGAGTGCTGTG	0.358													37	16					0	0	1	0	0	
WHAMM	123720	broad.mit.edu	37	15	83481903	83481903	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:83481903G>A	uc002bje.2	+	2	1164	c.658G>A	c.(658-660)GTT>ATT	p.V220I		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	220						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						ATTAATGAACGTTTACCAAGA	0.408													11	7					0	0	1	0	0	
PDE8A	5151	broad.mit.edu	37	15	85634368	85634368	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:85634368G>A	uc002blh.2	+	8	997	c.808G>A	c.(808-810)GCT>ACT	p.A270T	PDE8A_uc002bli.2_Intron|PDE8A_uc010bnc.2_Missense_Mutation_p.A23T|PDE8A_uc010bnd.2_Missense_Mutation_p.A23T|PDE8A_uc002blj.2_Intron|PDE8A_uc002blk.2_Intron	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	270	PAS.				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TGAAAAAAAGGCTGACTTGCT	0.393													9	33					0	0	1	0	0	
AGBL1	123624	broad.mit.edu	37	15	86813174	86813174	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:86813174C>T	uc002blz.1	+	13	1805	c.1725C>T	c.(1723-1725)AAC>AAT	p.N575N	AGBL1_uc002bma.1_Silent_p.N306N|AGBL1_uc002bmb.1_Silent_p.N269N	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	575					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TGCTGGTCAACGCAGATGTGA	0.473													7	34					0	0	1	0	0	
SV2B	9899	broad.mit.edu	37	15	91835608	91835608	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:91835608C>A	uc002bqv.2	+	12	2269	c.1878C>A	c.(1876-1878)GCC>GCA	p.A626A	SV2B_uc010uqv.1_Silent_p.A475A|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	626	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GAGCAACAGCCTTCGGCATTC	0.443													56	25					3.28615e-30	3.62961e-30	1	1	0	
PCSK6	5046	broad.mit.edu	37	15	101971538	101971538	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:101971538A>G	uc002bwy.2	-	5	958	c.644T>C	c.(643-645)CTG>CCG	p.L215P	PCSK6_uc010bpd.2_Missense_Mutation_p.L85P|PCSK6_uc010bpe.2_Missense_Mutation_p.L215P|PCSK6_uc002bxa.2_Missense_Mutation_p.L215P|PCSK6_uc002bxb.2_Missense_Mutation_p.L215P|PCSK6_uc002bxc.1_Missense_Mutation_p.L215P|PCSK6_uc002bxd.1_Missense_Mutation_p.L215P|PCSK6_uc002bxe.2_Missense_Mutation_p.L215P|PCSK6_uc002bxg.1_Missense_Mutation_p.L215P	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	215	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			ATTTGGGGCCAGGTCAGGGTG	0.448													5	47					0	0	1	0	0	
LUC7L	55692	broad.mit.edu	37	16	258086	258086	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:258086A>G	uc002cgc.1	-	4	468	c.357T>C	c.(355-357)GTT>GTC	p.V119V	LUC7L_uc002cga.1_Silent_p.V119V|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Silent_p.V119V|LUC7L_uc002cgb.1_Silent_p.V33V	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	119	Potential.						metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CCTTTGCAGAAACTTCCGCAC	0.403													5	68					0	0	1	0	0	
RAB40C	57799	broad.mit.edu	37	16	676075	676075	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:676075C>T	uc002chr.2	+	5	635	c.519C>T	c.(517-519)ATC>ATT	p.I173I	RAB40C_uc002chq.2_Silent_p.I154I	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	173					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				TATCCCGCATCGTGCTCATGC	0.642													9	89					0	0	1	0	0	
WDR90	197335	broad.mit.edu	37	16	702537	702537	+	Splice_Site	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:702537T>C	uc002cii.1	+	10	1176	c.1122_splice	c.e10+2	p.Q374_splice	WDR90_uc002cig.1_Splice_Site_p.Q374_splice|WDR90_uc002cih.1_Splice_Site_p.Q375_splice|WDR90_uc002cij.1_Splice_Site|WDR90_uc002cik.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90											ovary(1)	1		Hepatocellular(780;0.0218)				ACCAGACAGGTGAGGCTCCTG	0.622													17	30					0	0	1	0	0	
WDR90	197335	broad.mit.edu	37	16	715686	715686	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:715686A>G	uc002cii.1	+	35	4373	c.4319A>G	c.(4318-4320)GAG>GGG	p.E1440G	WDR90_uc002cij.1_Intron|WDR90_uc002cil.1_RNA|WDR90_uc002cin.1_Missense_Mutation_p.E55G|WDR90_uc010uul.1_Missense_Mutation_p.E39G|WDR90_uc002cio.1_Missense_Mutation_p.E39G|WDR90_uc010bqx.1_Missense_Mutation_p.E39G|RHOT2_uc010uum.1_5'Flank|RHOT2_uc002cip.2_5'Flank|RHOT2_uc002ciq.2_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	1440	WD 17.									ovary(1)	1		Hepatocellular(780;0.0218)				CAGGTGAACGAGGTGGTCTTC	0.652													4	83					0	0	1	0	0	
RHOT2	89941	broad.mit.edu	37	16	721704	721704	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:721704G>A	uc002cip.2	+	12	944	c.877G>A	c.(877-879)GTG>ATG	p.V293M	RHOT2_uc002ciq.2_Missense_Mutation_p.V186M|RHOT2_uc010bqy.2_Missense_Mutation_p.V72M	NM_138769	NP_620124	Q8IXI1	MIRO2_HUMAN	ras homolog gene family, member T2	293	Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			pancreas(1)	1		Hepatocellular(780;0.0218)				CAGGATCCACGTGCCCCCCGG	0.617													4	120					0	0	1	0	0	
SSTR5	6755	broad.mit.edu	37	16	1129314	1129314	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:1129314G>A	uc002ckq.2	+	1	534	c.446G>A	c.(445-447)CGC>CAC	p.R149H	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	149	Cytoplasmic (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	AGCTCGGCCCGCTGGCGCCGC	0.682													5	13					0	0	1	0	0	
IFT140	9742	broad.mit.edu	37	16	1652450	1652450	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:1652450G>A	uc002cmb.2	-	4	652	c.290C>T	c.(289-291)ACG>ATG	p.T97M		NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	97	WD 2.									ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CAGGGGCATCGTGTGCTGCTC	0.617													18	47					0	0	1	0	0	
MAPK8IP3	23162	broad.mit.edu	37	16	1818284	1818284	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:1818284C>T	uc002cmk.2	+	30	3764	c.3644C>T	c.(3643-3645)GCG>GTG	p.A1215V	MAPK8IP3_uc002cml.2_Missense_Mutation_p.A1209V|MAPK8IP3_uc010uvl.1_Missense_Mutation_p.A1216V	NM_015133	NP_055948	Q9UPT6	JIP3_HUMAN	mitogen-activated protein kinase 8 interacting	1215					vesicle-mediated transport	Golgi membrane	kinesin binding|MAP-kinase scaffold activity|protein kinase binding			breast(2)|central_nervous_system(1)	3						AGTGACAGGGCGGCCAGCAGC	0.632													40	124					0	0	1	0	0	
ZNF598	90850	broad.mit.edu	37	16	2052681	2052681	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:2052681C>A	uc002cof.1	-	6	533	c.518G>T	c.(517-519)CGC>CTC	p.R173L	ZNF598_uc002coe.1_5'Flank	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	173						intracellular	zinc ion binding			lung(1)|breast(1)	2						ACCCTGCATGCGATGCCGGGC	0.617													3	16					0.115264	0.116009	1	1	0	
SRRM2	23524	broad.mit.edu	37	16	2812472	2812472	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:2812472G>A	uc002crk.2	+	11	2492	c.1943G>A	c.(1942-1944)CGC>CAC	p.R648H	SRRM2_uc002crj.1_Missense_Mutation_p.R552H|SRRM2_uc002crl.1_Missense_Mutation_p.R648H|SRRM2_uc010bsu.1_Missense_Mutation_p.R552H	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	648	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGCAGGTCACGCTCTAGAACC	0.607													15	99					0	0	1	0	0	
SRRM2	23524	broad.mit.edu	37	16	2813634	2813634	+	Silent	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:2813634C>G	uc002crk.2	+	11	3654	c.3105C>G	c.(3103-3105)CTC>CTG	p.L1035L	SRRM2_uc002crj.1_Silent_p.L939L|SRRM2_uc002crl.1_Silent_p.L1035L|SRRM2_uc010bsu.1_Silent_p.L939L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1035	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCCTCTCTCTCTGTGCAGGAG	0.478													11	94					0	0	1	0	0	
CLDN6	9074	broad.mit.edu	37	16	3065718	3065718	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:3065718G>A	uc002csu.3	-	2	365	c.305C>T	c.(304-306)GCC>GTC	p.A102V		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	102	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGTACACTTGGCCCCAGCAAG	0.612													5	33					0	0	1	0	0	
ZNF597	146434	broad.mit.edu	37	16	3487176	3487176	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:3487176G>A	uc002cvd.2	-	4	707	c.523C>T	c.(523-525)CAG>TAG	p.Q175*		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	175	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAATTTTCTGATGCAAAACT	0.403													44	122					0	0	1	0	0	
BTBD12	84464	broad.mit.edu	37	16	3639789	3639789	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:3639789C>T	uc002cvp.2	-	12	4477	c.3850G>A	c.(3850-3852)GTG>ATG	p.V1284M		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1284	Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						ACCGCCTGCACGGCCAGCCCG	0.632								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				5	75					0	0	1	0	0	
DNASE1	1773	broad.mit.edu	37	16	3705926	3705926	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:3705926A>G	uc002cvr.2	+	3	2331	c.224A>G	c.(223-225)GAC>GGC	p.D75G		NM_005223	NP_005214	P24855	DNAS1_HUMAN	deoxyribonuclease I precursor	75					apoptosis|DNA catabolic process	extracellular region|nuclear envelope	actin binding|deoxyribonuclease I activity				0		Ovarian(90;0.0261)		Kidney(780;0.0556)	Dornase Alfa(DB00003)	AAGCTGCTGGACAACCTCAAT	0.627								Direct_reversal_of_damage					8	73					0	0	1	0	0	
ADCY9	115	broad.mit.edu	37	16	4164856	4164856	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:4164856C>T	uc002cvx.2	-	2	1127	c.588G>A	c.(586-588)ACG>ACA	p.T196T		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	196	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CTGAGACAGGCGTCAAGACCT	0.617													4	55					0	0	1	0	0	
GLYR1	84656	broad.mit.edu	37	16	4871450	4871450	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:4871450G>T	uc002cxx.3	-	9	774	c.737C>A	c.(736-738)ACT>AAT	p.T246N	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.T160N|GLYR1_uc002cya.2_Missense_Mutation_p.T246N|GLYR1_uc010uxv.1_Missense_Mutation_p.T165N	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	246					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						GGTGGAGCCAGTTTCCTACGG	0.522													3	41					0.004672	0.00475816	1	1	0	
NAGPA	51172	broad.mit.edu	37	16	5083687	5083687	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:5083687C>T	uc002cyg.2	-	2	150	c.129G>A	c.(127-129)GCG>GCA	p.A43A	ALG1_uc002cyj.2_5'Flank|NAGPA_uc002cyf.2_5'UTR|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_5'UTR|NAGPA_uc010uxx.1_Silent_p.A43A	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	43	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	GGCGCGCGCGCGCGCGTGGAT	0.761													5	12					0	0	1	0	0	
ALG1	56052	broad.mit.edu	37	16	5130946	5130946	+	Splice_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:5130946G>A	uc002cym.2	+	10	1003	c.962_splice	c.e10-1	p.G321_splice	ALG1_uc002cyj.2_Splice_Site_p.G210_splice|ALG1_uc002cyn.2_Splice_Site_p.G321_splice|ALG1_uc010bue.2_Splice_Site_p.G210_splice|ALG1_uc010uxy.1_Splice_Site_p.G210_splice	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase						dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				TCTCTGTGAAGGCAAAGGGCC	0.612													21	62					0	0	1	0	0	
TMEM186	25880	broad.mit.edu	37	16	8889867	8889867	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:8889867C>T	uc002cze.2	-	2	618	c.584G>A	c.(583-585)CGC>CAC	p.R195H	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	195						integral to membrane|mitochondrion				ovary(1)	1						GTCCAGGATGCGTCCATAGCG	0.557													36	104					0	0	1	0	0	
TMEM186	25880	broad.mit.edu	37	16	8890042	8890042	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:8890042C>T	uc002cze.2	-	2	443	c.409G>A	c.(409-411)GGC>AGC	p.G137S	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	137						integral to membrane|mitochondrion				ovary(1)	1						AGCATGGTGCCAGACTCATTC	0.552													5	89					0	0	1	0	0	
USP7	7874	broad.mit.edu	37	16	8988952	8988952	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:8988952A>G	uc002czl.2	-	28	3174	c.2975T>C	c.(2974-2976)GTG>GCG	p.V992A	USP7_uc010uyk.1_Missense_Mutation_p.V893A|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.V893A|USP7_uc002czk.2_Missense_Mutation_p.V976A	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	992					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GAAATGCGCCACTGTGACAAG	0.502													6	309					0	0	1	0	0	
ATF7IP2	80063	broad.mit.edu	37	16	10525021	10525021	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:10525021G>A	uc002czu.2	+	3	771	c.544G>A	c.(544-546)GAG>AAG	p.E182K	ATF7IP2_uc002czv.2_Missense_Mutation_p.E182K|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.E182K|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TCAGATGCCAGAGTCTACAGT	0.428													4	105					0	0	1	0	0	
CIITA	4261	broad.mit.edu	37	16	11000842	11000842	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11000842T>C	uc002dai.3	+	11	1626	c.1493T>C	c.(1492-1494)CTA>CCA	p.L498P	CIITA_uc002daj.3_Missense_Mutation_p.L499P|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.L498P|CIITA_uc002dah.2_Missense_Mutation_p.L450P|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	498	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CTGCTCATCCTAGACGGCTTC	0.657			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								8	123					0	0	1	0	0	
CIITA	4261	broad.mit.edu	37	16	11000938	11000938	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11000938C>T	uc002dai.3	+	11	1722	c.1589C>T	c.(1588-1590)GCC>GTC	p.A530V	CIITA_uc002daj.3_Missense_Mutation_p.A531V|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Missense_Mutation_p.A530V|CIITA_uc002dah.2_Missense_Mutation_p.A482V|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	530	NACHT.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						GGGCTGCTGGCCGGCCTTTTC	0.692			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								4	33					0	0	1	0	0	
CIITA	4261	broad.mit.edu	37	16	11016335	11016335	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11016335T>C	uc002dai.3	+	18	3438	c.3305T>C	c.(3304-3306)GTG>GCG	p.V1102A	CIITA_uc002daj.3_Missense_Mutation_p.V1103A|CIITA_uc002dak.3_Missense_Mutation_p.V518A	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	1102					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TGTCCTCATGTGGAGACGCTG	0.562			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								4	32					0	0	1	0	0	
CLEC16A	23274	broad.mit.edu	37	16	11118742	11118742	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11118742G>A	uc002dao.2	+	13	1731	c.1501G>A	c.(1501-1503)GTG>ATG	p.V501M	CLEC16A_uc002dan.3_Missense_Mutation_p.V483M	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	501								p.0?(1)		ovary(1)|central_nervous_system(1)	2						TGCCCTGTTCGTGCTCTGCCT	0.547													3	12					0	0	1	0	0	
TXNDC11	51061	broad.mit.edu	37	16	11773600	11773600	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11773600G>A	uc010buu.1	-	13	2471	c.2409C>T	c.(2407-2409)AGC>AGT	p.S803S	TXNDC11_uc002dbg.1_Silent_p.S776S	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	803					cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						CATTCTGGGGGCTGGAAGCAG	0.527													20	62					0	0	1	0	0	
ZC3H7A	29066	broad.mit.edu	37	16	11873209	11873209	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:11873209C>T	uc002dbk.2	-	3	317	c.119G>A	c.(118-120)CGT>CAT	p.R40H	ZC3H7A_uc002dbl.2_Missense_Mutation_p.R40H|ZC3H7A_uc002dbm.1_Missense_Mutation_p.R40H	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	40						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						CACGAGAGCACGCAAATATAC	0.333													9	35					0	0	1	0	0	
MKL2	57496	broad.mit.edu	37	16	14334332	14334332	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:14334332C>T	uc010uza.1	+	10	1225	c.1070C>T	c.(1069-1071)GCA>GTA	p.A357V	MKL2_uc002dcg.2_Missense_Mutation_p.A357V|MKL2_uc002dch.2_Missense_Mutation_p.A346V|MKL2_uc010uzb.1_Missense_Mutation_p.A306V	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	346					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						ATCCTGCCTGCACCATTCAAG	0.502													12	138					0	0	1	0	0	
BFAR	51283	broad.mit.edu	37	16	14742310	14742310	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:14742310A>G	uc002dco.2	+	3	610	c.329A>G	c.(328-330)AAT>AGT	p.N110S	BFAR_uc002dcm.2_Missense_Mutation_p.N110S|BFAR_uc002dcn.2_Intron|BFAR_uc002dcp.2_Intron|BFAR_uc010uzh.1_Intron	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	110	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						CAGCAGAATAATGACATAGTC	0.403													23	133					0	0	1	0	0	
NTAN1	123803	broad.mit.edu	37	16	15133905	15133905	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:15133905G>A	uc002ddd.2	-	8	565	c.560C>T	c.(559-561)GCA>GTA	p.A187V	PDXDC1_uc002ddc.2_Intron|NTAN1_uc010uzo.1_Missense_Mutation_p.A82V	NM_173474	NP_775745	Q96AB6	NTAN1_HUMAN	N-terminal Asn amidase	187						cytoplasm					0						GTAAATCTCTGCAGTCTTAAT	0.473													9	141					0	0	1	0	0	
ABCC1	4363	broad.mit.edu	37	16	16108453	16108453	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:16108453C>A	uc010bvi.2	+	4	632	c.457C>A	c.(457-459)CTG>ATG	p.L153M	ABCC1_uc010bvj.2_Missense_Mutation_p.L153M|ABCC1_uc010bvk.2_Missense_Mutation_p.L153M|ABCC1_uc010bvl.2_Missense_Mutation_p.L153M|ABCC1_uc010bvm.2_Missense_Mutation_p.L153M|ABCC1_uc002del.3_Missense_Mutation_p.L37M|ABCC1_uc010bvn.2_Missense_Mutation_p.L16M	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	153	Helical; Name=4.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CCTAGCCATCCTGAGATCCAA	0.512													24	76					4.22769e-11	4.56644e-11	1	1	0	
ARL6IP1	23204	broad.mit.edu	37	16	18806789	18806789	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:18806789C>T	uc002dfl.1	-	4	474	c.405G>A	c.(403-405)AAG>AAA	p.K135K	ARL6IP1_uc010van.1_Silent_p.K106K|ARL6IP1_uc010bvz.1_Intron	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	135	Helical; (Potential).					integral to membrane	protein binding				0						AAAGTACCATCTTAGGTTTTT	0.338													6	51					0	0	1	0	0	
TMC5	79838	broad.mit.edu	37	16	19483534	19483534	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:19483534C>T	uc002dgc.3	+	11	2656	c.1907C>T	c.(1906-1908)GCC>GTC	p.A636V	TMC5_uc010vaq.1_Intron|TMC5_uc002dgb.3_Missense_Mutation_p.A636V|TMC5_uc010var.1_Missense_Mutation_p.A636V|TMC5_uc002dgd.1_Missense_Mutation_p.A390V|TMC5_uc002dge.3_Missense_Mutation_p.A390V|TMC5_uc002dgf.3_Missense_Mutation_p.A319V|TMC5_uc002dgg.3_Missense_Mutation_p.A277V	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	636	Helical; (Potential).					integral to membrane				skin(1)	1						TGCTGTGCAGCCGTTTATTAC	0.542													23	49					0	0	1	0	0	
IQCK	124152	broad.mit.edu	37	16	19745102	19745102	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:19745102G>A	uc002dgr.2	+	4	1028	c.329G>A	c.(328-330)CGT>CAT	p.R110H	IQCK_uc002dgs.2_RNA|IQCK_uc010vat.1_Missense_Mutation_p.R110H|IQCK_uc010bwc.2_RNA|IQCK_uc010vau.1_Missense_Mutation_p.R22H	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	110										skin(1)	1						ATGATCTCACGTACACCCTGT	0.438													31	72					0	0	1	0	0	
DNAH3	55567	broad.mit.edu	37	16	20966217	20966217	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:20966217C>A	uc010vbe.1	-	55	10989	c.10989G>T	c.(10987-10989)AAG>AAT	p.K3663N	DNAH3_uc010vbd.1_Missense_Mutation_p.K1098N	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3663	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACATCACCGCCTTTGCACAGC	0.517													5	154					0.00198382	0.00202401	1	1	0	
RRN3P3	100131998	broad.mit.edu	37	16	22441145	22441145	+	RNA	SNP	C	A	A	rs144619055	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:22441145C>A	uc002dkp.2	-	5		c.1261G>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TCAAAGGGGACGAAGGTGTCC	0.428													5	72					2.0095e-06	2.11708e-06	1	1	0	
USP31	57478	broad.mit.edu	37	16	23080573	23080573	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:23080573G>A	uc002dll.2	-	16	2853	c.2853C>T	c.(2851-2853)GAC>GAT	p.D951D	USP31_uc002dlk.2_Silent_p.D223D|USP31_uc010vca.1_Silent_p.D254D|USP31_uc010bxm.2_Silent_p.D239D	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	951	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		TGTCCGATTCGTCTTTGAACA	0.557													36	114					0	0	1	0	0	
USP31	57478	broad.mit.edu	37	16	23080800	23080800	+	Missense_Mutation	SNP	G	A	A	rs149268440		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:23080800G>A	uc002dll.2	-	16	2626	c.2626C>T	c.(2626-2628)CGC>TGC	p.R876C	USP31_uc002dlk.2_Missense_Mutation_p.R148C|USP31_uc010vca.1_Missense_Mutation_p.R179C|USP31_uc010bxm.2_Missense_Mutation_p.R164C	NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	876	Ser-rich.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		GAATTGGAGCGCATCTGCAGC	0.517													5	48					0	0	1	0	0	
IL21R	50615	broad.mit.edu	37	16	27441381	27441381	+	Translation_Start_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:27441381G>A	uc002doq.1	+	2	222	c.-11G>A	c.(-13--9)CCGTG>CCATG		IL21R_uc002dor.1_Translation_Start_Site|IL21R_uc002dos.1_Translation_Start_Site	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor						natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						TTGCAGGCCCGTGGGAGTCAG	0.706			T	BCL6	NHL								4	19					0	0	1	0	0	
GTF3C1	2975	broad.mit.edu	37	16	27481581	27481581	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:27481581G>A	uc002dov.1	-	31	4702	c.4662C>T	c.(4660-4662)AAC>AAT	p.N1554N	GTF3C1_uc002dou.2_Silent_p.N1554N	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1554						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CCACCATGTCGTTTGTGGGCT	0.542													31	73					0	0	1	0	0	
GSG1L	146395	broad.mit.edu	37	16	27895882	27895882	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:27895882C>T	uc002doz.2	-	3	560	c.475G>A	c.(475-477)GAG>AAG	p.E159K	GSG1L_uc010bya.1_Intron|GSG1L_uc010bxz.1_Missense_Mutation_p.E4K|GSG1L_uc002doy.2_Missense_Mutation_p.E4K	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	159						integral to membrane				ovary(1)	1						TGGAAGAGCTCGAGACACATG	0.592													5	23					0	0	1	0	0	
SPN	6693	broad.mit.edu	37	16	29675600	29675600	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:29675600G>A	uc002dtm.2	+	2	687	c.551G>A	c.(550-552)GGA>GAA	p.G184E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SPN_uc002dtn.2_Missense_Mutation_p.G184E|SPN_uc010bzd.2_RNA	NM_001030288	NP_001025459	P16150	LEUK_HUMAN	sialophorin precursor	184	Extracellular (Potential).				blood coagulation|cellular defense response|chemotaxis|defense response to bacterium|establishment or maintenance of cell polarity|immune response|leukocyte migration|negative regulation of cell adhesion|positive regulation of tumor necrosis factor biosynthetic process	extracellular space|integral to plasma membrane	bacterial cell surface binding|transmembrane receptor activity			central_nervous_system(2)	2						GGCACCTCTGGACCCCCTGTT	0.597													20	156					0	0	1	0	0	
TAOK2	9344	broad.mit.edu	37	16	29996880	29996880	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:29996880G>A	uc002dva.1	+	14	2552	c.1769G>A	c.(1768-1770)CGC>CAC	p.R590H	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Missense_Mutation_p.R590H|TAOK2_uc002dvc.1_Missense_Mutation_p.R590H|TAOK2_uc010bzm.1_Missense_Mutation_p.R597H|TAOK2_uc002dvd.1_Missense_Mutation_p.R417H	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	590	Potential.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						TACAAACTTCGCAAGGAACAG	0.642													15	35					0	0	1	0	0	
ITGAL	3683	broad.mit.edu	37	16	30532882	30532882	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:30532882G>A	uc002dyi.3	+	31	3585	c.3409G>A	c.(3409-3411)GCA>ACA	p.A1137T	ITGAL_uc002dyj.3_Missense_Mutation_p.A1053T|ITGAL_uc010vev.1_Missense_Mutation_p.A371T	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1137	Cytoplasmic (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TGGAATCCCTGCAGAAGACTC	0.542													21	60					0	0	1	0	0	
ARMC5	79798	broad.mit.edu	37	16	31473646	31473646	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:31473646C>T	uc002ecc.2	+	3	1307	c.778C>T	c.(778-780)CGT>TGT	p.R260C	ARMC5_uc010vfn.1_Missense_Mutation_p.R355C|ARMC5_uc010vfo.1_Missense_Mutation_p.R292C|ARMC5_uc002eca.3_Missense_Mutation_p.R260C|ARMC5_uc010vfp.1_Intron|ARMC5_uc002ecb.2_Missense_Mutation_p.R260C	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	260	ARM 3.						binding			pancreas(1)	1						AGCCCTCGTCCGTGCCCTCCT	0.687													11	29					0	0	1	0	0	
ARMC5	79798	broad.mit.edu	37	16	31477726	31477726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:31477726G>A	uc002ecc.2	+	6	2853	c.2324G>A	c.(2323-2325)CGG>CAG	p.R775Q	ARMC5_uc010vfn.1_Missense_Mutation_p.R870Q|ARMC5_uc010vfo.1_Missense_Mutation_p.R807Q|ARMC5_uc002eca.3_3'UTR|ARMC5_uc010vfp.1_Missense_Mutation_p.R583Q|ARMC5_uc002ecb.2_3'UTR	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	775	BTB.						binding			pancreas(1)	1						CCTTTCTTCCGGGCCCTGCTG	0.667													4	14					0	0	1	0	0	
ABCC12	94160	broad.mit.edu	37	16	48139203	48139203	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:48139203G>A	uc002efc.1	-	19	2866	c.2520C>T	c.(2518-2520)GGC>GGT	p.G840G	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	840	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				CCAGCACCGCGCCGACCTCAC	0.527													9	15					0	0	1	0	0	
HEATR3	55027	broad.mit.edu	37	16	50106523	50106523	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:50106523A>C	uc002efw.2	+	5	682	c.520A>C	c.(520-522)AGT>CGT	p.S174R	HEATR3_uc002efx.2_Missense_Mutation_p.S88R	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	174							binding			ovary(1)|skin(1)	2						TAGTGAATGCAGTAGTAGAGC	0.338													24	51					0	0	1	0	0	
RBL2	5934	broad.mit.edu	37	16	53524153	53524153	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:53524153A>C	uc002ehi.3	+	22	3479	c.3361A>C	c.(3361-3363)AAT>CAT	p.N1121H	RBL2_uc002ehj.2_Missense_Mutation_p.N831H|RBL2_uc010vgw.1_Missense_Mutation_p.N500H	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	1121					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TTGCCCAGAAAATCATTCTGC	0.383													11	96					0	0	1	0	0	
IRX6	79190	broad.mit.edu	37	16	55363085	55363085	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:55363085G>A	uc002ehy.2	+	5	1728	c.1195G>A	c.(1195-1197)GCG>ACG	p.A399T	IRX6_uc002ehx.2_Missense_Mutation_p.A399T	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	399						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						CAGAGACTCCGCGTGCGACGA	0.642													23	53					0	0	1	0	0	
IRX6	79190	broad.mit.edu	37	16	55363166	55363166	+	Missense_Mutation	SNP	C	T	T	rs138532658		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:55363166C>T	uc002ehy.2	+	5	1809	c.1276C>T	c.(1276-1278)CCG>TCG	p.P426S	IRX6_uc002ehx.2_Missense_Mutation_p.P426S	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	426						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						GAACTGTGCGCCGTGCCCGCG	0.617													6	79					0	0	1	0	0	
HERPUD1	9709	broad.mit.edu	37	16	56966259	56966259	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:56966259G>A	uc002eke.1	+	1	512	c.103G>A	c.(103-105)GGC>AGC	p.G35S	HERPUD1_uc010vhj.1_Missense_Mutation_p.G96S|HERPUD1_uc002ekf.1_Missense_Mutation_p.G35S|HERPUD1_uc002ekg.1_Missense_Mutation_p.G35S|HERPUD1_uc010cco.1_Missense_Mutation_p.G96S|HERPUD1_uc010ccp.1_Missense_Mutation_p.G96S	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	35	Ubiquitin-like.|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						CTGGAGTGTGGGCCACCTCAA	0.721			T	ERG	prostate								3	13					0	0	1	0	0	
NLRC5	84166	broad.mit.edu	37	16	57095558	57095558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:57095558C>T	uc002ekk.1	+	32	4324	c.4099C>T	c.(4099-4101)CAG>TAG	p.Q1367*	NLRC5_uc002ekn.2_Nonsense_Mutation_p.Q1028*|NLRC5_uc002ekl.2_Nonsense_Mutation_p.Q1171*|NLRC5_uc002ekm.2_Nonsense_Mutation_p.Q1141*|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekp.1_Nonsense_Mutation_p.Q282*|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Nonsense_Mutation_p.Q254*	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1367					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GGGCCAGAAGCAGCTGGCCAT	0.677													22	70					0	0	1	0	0	
CX3CL1	6376	broad.mit.edu	37	16	57416243	57416243	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:57416243T>C	uc002eli.2	+	3	560	c.493T>C	c.(493-495)TCA>CCA	p.S165P		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	165	Mucin-like stalk.|Extracellular (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						GACTGGTTCCTCAGGGACCAG	0.672													11	17					0	0	1	0	0	
GPR56	9289	broad.mit.edu	37	16	57689903	57689903	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:57689903C>T	uc002emb.2	+	8	1308	c.1016C>T	c.(1015-1017)CCG>CTG	p.P339L	GPR56_uc002elz.1_Missense_Mutation_p.P169L|GPR56_uc002ema.1_Missense_Mutation_p.P164L|GPR56_uc002emc.2_Missense_Mutation_p.P339L|GPR56_uc002emf.2_Missense_Mutation_p.P339L|GPR56_uc010vhs.1_Missense_Mutation_p.P339L|GPR56_uc002emd.2_Missense_Mutation_p.P339L|GPR56_uc002eme.2_Missense_Mutation_p.P339L|GPR56_uc010vht.1_Missense_Mutation_p.P344L|GPR56_uc002emg.3_Missense_Mutation_p.P339L|GPR56_uc010vhu.1_Missense_Mutation_p.P164L	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	339	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						CAGCTACAGCCGGTGAGTGGG	0.552													9	106					0	0	1	0	0	
CNOT1	23019	broad.mit.edu	37	16	58617056	58617056	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:58617056C>T	uc002env.2	-	9	1130	c.837G>A	c.(835-837)CAG>CAA	p.Q279Q	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.Q279Q|CNOT1_uc002enx.2_Silent_p.Q279Q|CNOT1_uc002enz.1_Intron	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	279					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GAACACCAAACTGCACGATTA	0.428													8	85					0	0	1	0	0	
CDH11	1009	broad.mit.edu	37	16	64981896	64981896	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:64981896C>T	uc002eoi.2	-	13	2435	c.2001G>A	c.(1999-2001)GGG>GGA	p.G667G	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_3'UTR|CDH11_uc010vin.1_Silent_p.G541G	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	667	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTTCCCCACCCCCTTCATCAT	0.433			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			9	97					0	0	1	0	0	
CDH11	1009	broad.mit.edu	37	16	65038607	65038607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:65038607C>T	uc002eoi.2	-	3	600	c.166G>A	c.(166-168)GTC>ATC	p.V56I	CDH11_uc010cdn.2_RNA|CDH11_uc002eoj.2_Missense_Mutation_p.V56I|CDH11_uc010vin.1_Intron|CDH11_uc010vio.1_Missense_Mutation_p.V56I	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	56	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		TGGTTCCAGACCCAGCCACGC	0.637			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			6	63					0	0	1	0	0	
FHOD1	29109	broad.mit.edu	37	16	67265542	67265542	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:67265542G>A	uc002esl.2	-	15	2495	c.2383C>T	c.(2383-2385)CGG>TGG	p.R795W	FHOD1_uc002esk.2_5'Flank|FHOD1_uc010ced.2_Missense_Mutation_p.R602W	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	795	Interaction with ROCK1.|FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		CCAGGTACCCGCTCCATGCTG	0.562													23	49					0	0	1	0	0	
PLEKHG4	25894	broad.mit.edu	37	16	67316181	67316181	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:67316181A>G	uc002eso.3	+	8	3717	c.1182A>G	c.(1180-1182)CAA>CAG	p.Q394Q	PLEKHG4_uc002esp.3_Silent_p.Q201Q|PLEKHG4_uc002esq.3_Silent_p.Q394Q|PLEKHG4_uc010cef.2_Silent_p.Q394Q|PLEKHG4_uc002ess.3_Silent_p.Q394Q|PLEKHG4_uc010ceg.2_Silent_p.Q313Q	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	394					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		CATGGCTACAATGCCAGGGGG	0.607													3	40					0	0	1	0	0	
CTCF	10664	broad.mit.edu	37	16	67660619	67660619	+	Splice_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:67660619G>A	uc002etl.2	+	8	1808	c.1518_splice	c.e8+1	p.Q506_splice	CTCF_uc010cek.2_Splice_Site_p.Q178_splice|CTCF_uc002etm.1_5'Flank	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor						chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		TTGTAGACAGGTAGGAACCTT	0.428													9	47					0	0	1	0	0	
RLTPR	146206	broad.mit.edu	37	16	67683857	67683857	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:67683857C>T	uc002etn.2	+	21	2188	c.2068C>T	c.(2068-2070)CGT>TGT	p.R690C	RLTPR_uc010cel.1_Missense_Mutation_p.R683C|RLTPR_uc010vjr.1_Missense_Mutation_p.R654C	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	690										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		ACTGACAGCACGTGCAGTCCA	0.642													10	16					0	0	1	0	0	
LCAT	3931	broad.mit.edu	37	16	67976779	67976779	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:67976779T>C	uc002euy.1	-	3	423	c.412A>G	c.(412-414)AGC>GGC	p.S138G		NM_000229	NP_000220	P04180	LCAT_HUMAN	lecithin-cholesterol acyltransferase precursor	138					cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|reverse cholesterol transport|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein A-I binding|phosphatidylcholine-sterol O-acyltransferase activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00418)|Epithelial(162;0.0183)|all cancers(182;0.12)		AGCTTGCTGCTGTCCAGGTAC	0.652													23	75					0	0	1	0	0	
NOB1	28987	broad.mit.edu	37	16	69776336	69776336	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:69776336T>C	uc002exs.2	-	9	1154	c.1138A>G	c.(1138-1140)AGC>GGC	p.S380G		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	380						nucleus	metal ion binding|protein binding				0						GCTGAGCGGCTGGAGATGTCA	0.572													16	44					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70841851	70841851	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:70841851T>C	uc002ezr.2	-	86	15123	c.14995A>G	c.(14995-14997)AAG>GAG	p.K4999E	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	5000										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGATGCCCTTGGTCTCACCC	0.567													12	89					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70852299	70852299	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:70852299G>A	uc002ezr.2	-	84	14729	c.14601C>T	c.(14599-14601)TGC>TGT	p.C4867C	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4868										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CGGGCATCCGGCATTCCGTGG	0.617													9	14					0	0	1	0	0	
ZNF19	7567	broad.mit.edu	37	16	71509691	71509691	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:71509691A>G	uc010cgc.1	-	6	1265	c.759T>C	c.(757-759)AGT>AGC	p.S253S	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Silent_p.S241S|ZNF19_uc002fal.1_Silent_p.S241S|ZNF19_uc002fam.1_Silent_p.S253S	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	253	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		TACTCGTGAAACTATTCCCAC	0.443													5	135					0	0	1	0	0	
ZFHX3	463	broad.mit.edu	37	16	72821576	72821576	+	Silent	SNP	C	T	T	rs138643120		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:72821576C>T	uc002fck.2	-	10	11272	c.10599G>A	c.(10597-10599)GCG>GCA	p.A3533A	uc002fcj.1_RNA|ZFHX3_uc002fcl.2_Silent_p.A2619A	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3533	C2H2-type 22.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CGCTCTCGCACGCCAGGCAGT	0.393													19	117					0	0	1	0	0	
ZFHX3	463	broad.mit.edu	37	16	72991508	72991508	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:72991508C>T	uc002fck.2	-	2	3210	c.2537G>A	c.(2536-2538)CGC>CAC	p.R846H	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	846				RHLG -> HHRV (in Ref. 1).	muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCCCAGGTGGCGGTTGTGTTG	0.562													9	80					0	0	1	0	0	
GLG1	2734	broad.mit.edu	37	16	74526897	74526897	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:74526897G>A	uc002fcy.3	-	7	1242	c.1192C>T	c.(1192-1194)CTC>TTC	p.L398F	GLG1_uc002fcx.2_Missense_Mutation_p.L398F|GLG1_uc002fcw.3_Missense_Mutation_p.L387F|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	398	Cys-rich GLG1 5.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						AAGTAGGAGAGCCTGGCTTCA	0.398													9	39					0	0	1	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77334209	77334209	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:77334209G>T	uc002ffc.3	-	17	3044	c.2625C>A	c.(2623-2625)GCC>GCA	p.A875A	ADAMTS18_uc010chc.1_Silent_p.A463A|ADAMTS18_uc002ffe.1_Silent_p.A571A	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	875	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCCAGGTATAGGCAGGTCTTT	0.473													13	40					2.89027e-11	3.1258e-11	1	1	0	
KIAA0182	23199	broad.mit.edu	37	16	85690909	85690909	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:85690909G>A	uc002fix.2	+	8	1413	c.1339G>A	c.(1339-1341)GCG>ACG	p.A447T	KIAA0182_uc002fiw.2_Missense_Mutation_p.A343T|KIAA0182_uc002fiy.2_Missense_Mutation_p.A374T	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	447							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						CGGCCTGCAGGCGCCCAAGCC	0.642													5	75					0	0	1	0	0	
KIAA0182	23199	broad.mit.edu	37	16	85698686	85698686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:85698686G>A	uc002fix.2	+	12	2784	c.2710G>A	c.(2710-2712)GAC>AAC	p.D904N	KIAA0182_uc002fiw.2_Missense_Mutation_p.D800N|KIAA0182_uc002fiy.2_Missense_Mutation_p.D831N|KIAA0182_uc002fiz.2_Intron|KIAA0182_uc010cho.2_Missense_Mutation_p.D84N	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	904							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						AGCAGTGGCCGACTCCTTGAC	0.557													3	56					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	16	88620287	88620287	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:88620287C>T	uc010vox.1	-	2	343	c.343G>A	c.(343-345)GAC>AAC	p.D115N						RecName: Full=Putative uncharacterized protein C16orf85;																		AGGAAGGAGTCAGCCCCGGTG	0.602													8	20					0	0	1	0	0	
CPNE7	27132	broad.mit.edu	37	16	89661935	89661935	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:89661935G>C	uc002fnp.2	+	16	1818	c.1688G>C	c.(1687-1689)GGC>GCC	p.G563A	CPNE7_uc002fnq.2_Missense_Mutation_p.G488A	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	563	VWFA.				lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GGCGACGACGGCGTCCTGCGC	0.667													10	28					0	0	1	0	0	
SPATA2L	124044	broad.mit.edu	37	16	89764300	89764300	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:89764300G>A	uc002foj.2	-	3	782	c.717C>T	c.(715-717)GAC>GAT	p.D239D	SPATA2L_uc002fok.2_Intron	NM_152339	NP_689552	Q8IUW3	SPA2L_HUMAN	spermatogenesis associated 2-like	239											0		Lung NSC(15;0.00043)|all_lung(18;0.000665)|all_hematologic(23;0.0355)		BRCA - Breast invasive adenocarcinoma(80;0.0272)		ACAGGCTGGCGTCCTCCGACC	0.682													5	16					0	0	1	0	0	
TUBB3	10381	broad.mit.edu	37	16	89986444	89986444	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:89986444C>T	uc002fpf.2	+	1	1186	c.778C>T	c.(778-780)CAT>TAT	p.H260Y	MC1R_uc002fpe.3_Missense_Mutation_p.H260Y|TUBB3_uc010ciz.1_5'Flank	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	Error:Variant_position_missing_in_Q13509_after_alignment					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CTTCTTCCTGCATCTCACACT	0.587													7	82					0	0	1	0	0	
PRDM7	11105	broad.mit.edu	37	16	90126823	90126823	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:90126823T>G	uc010cje.2	-	9	1179	c.1159A>C	c.(1159-1161)ATG>CTG	p.M387L	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.M181L	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	387						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCATACCAGACCAG	0.522													4	78					0	0	1	0	0	
GEMIN4	50628	broad.mit.edu	37	17	650620	650620	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:650620G>A	uc002frs.1	-	2	782	c.663C>T	c.(661-663)CGC>CGT	p.R221R	GEMIN4_uc010vqa.1_Intron	NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	221					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		GTGTCAGCCCGCGGAGCAGCA	0.622													30	71					0	0	1	0	0	
SCARF1	8578	broad.mit.edu	37	17	1538704	1538704	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:1538704C>T	uc002fsz.1	-	11	1891	c.1841G>A	c.(1840-1842)CGA>CAA	p.R614Q	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.R528Q	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	614	Pro/Ser-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CTTGGGCTTTCGGAGCGGGCT	0.662													14	44					0	0	1	0	0	
SGSM2	9905	broad.mit.edu	37	17	2276761	2276761	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:2276761G>A	uc002fun.3	+	16	2094	c.1919G>A	c.(1918-1920)AGC>AAC	p.S640N	SGSM2_uc002fum.3_Missense_Mutation_p.S685N|SGSM2_uc010vqw.1_Missense_Mutation_p.S640N|SGSM2_uc002fuo.2_3'UTR|SGSM2_uc002fup.1_5'Flank|SGSM2_uc002fuq.2_5'Flank	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	640	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AGCATCGACAGCCACGTGCAG	0.657													4	61					0	0	1	0	0	
OR1D4	8385	broad.mit.edu	37	17	2966259	2966259	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:2966259T>C	uc010vra.1	-	1	697	c.697A>G	c.(697-699)ACC>GCC	p.T233A		NM_003552	NP_003543			olfactory receptor, family 1, subfamily D,												0						TAGGATGTGGTCATGAACCCT	0.498													3	33					0	0	1	0	0	
SPNS3	201305	broad.mit.edu	37	17	4348354	4348354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:4348354C>T	uc002fxt.2	+	3	337	c.293C>T	c.(292-294)GCA>GTA	p.A98V	SPNS3_uc002fxu.2_Intron	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	98	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTGCTGTCTGCACCTGTGTTT	0.617													71	153					0	0	1	0	0	
PSMB6	5694	broad.mit.edu	37	17	4701657	4701657	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:4701657G>A	uc002fzb.2	+	6	693	c.660G>A	c.(658-660)CGG>CGA	p.R220R		NM_002798	NP_002789	P28072	PSB6_HUMAN	proteasome beta 6 subunit precursor	220					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity			ovary(2)	2						GGGTAGAGCGGCAAGTACTTT	0.532													12	192					0	0	1	0	0	
KIF1C	10749	broad.mit.edu	37	17	4910366	4910366	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:4910366T>C	uc002gan.1	+	14	1648	c.1322T>C	c.(1321-1323)ATG>ACG	p.M441T		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	441	Potential.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GAGGAAGCCATGGAGAGGCTG	0.567													14	38					0	0	1	0	0	
KIAA0753	9851	broad.mit.edu	37	17	6531749	6531749	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:6531749T>C	uc002gde.3	-	3	765	c.406A>G	c.(406-408)AAG>GAG	p.K136E	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	136						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		ATTTTATACTTAGTATGTCCA	0.433													12	41					0	0	1	0	0	
TEKT1	83659	broad.mit.edu	37	17	6718526	6718526	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:6718526T>C	uc002gdt.2	-	5	695	c.585A>G	c.(583-585)TCA>TCG	p.S195S	TEKT1_uc010vth.1_Silent_p.S49S	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	195					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TGATGTTTGGTGAGTTGTTGT	0.502													9	108					0	0	1	0	0	
C17orf81	23587	broad.mit.edu	37	17	7155822	7155822	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7155822A>G	uc002gfg.1	+	2	108	c.1A>G	c.(1-3)ATG>GTG	p.M1V	DULLARD_uc002gfd.2_5'Flank|DULLARD_uc002gfe.2_5'Flank|DULLARD_uc002gff.2_5'Flank|DULLARD_uc002gfc.2_5'Flank|C17orf81_uc002gfj.2_Missense_Mutation_p.M1V|C17orf81_uc010cmb.2_Missense_Mutation_p.M1V|C17orf81_uc002gfh.1_Missense_Mutation_p.M1V|C17orf81_uc002gfi.1_Missense_Mutation_p.M1V|C17orf81_uc002gfk.1_Missense_Mutation_p.M1V|C17orf81_uc002gfl.1_Missense_Mutation_p.M1V	NM_203415	NP_981960	Q8TE02	DERP6_HUMAN	S-phase 2 protein isoform 4	1					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding				0						ACACTGGGTCATGACGCCATC	0.602													4	27					0	0	1	0	0	
C17orf74	201243	broad.mit.edu	37	17	7329644	7329644	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7329644T>C	uc002ggw.2	+	3	407	c.334T>C	c.(334-336)TTC>CTC	p.F112L	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	112						integral to membrane					0		Prostate(122;0.157)				CTGCCACCATTTCTCCAACCA	0.438													51	101					0	0	1	0	0	
ZBTB4	57659	broad.mit.edu	37	17	7365271	7365271	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7365271G>A	uc002ghc.3	-	4	3280	c.3030C>T	c.(3028-3030)GGC>GGT	p.G1010G	ZBTB4_uc002ghd.3_Silent_p.G1010G	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	1010					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		ACCCCACATCGCCCTTCTGGG	0.642													10	51					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7695578	7695578	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7695578A>G	uc002giu.1	+	45	7076	c.7062A>G	c.(7060-7062)GTA>GTG	p.V2354V		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2354					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGGACACGGTATATGAGTATT	0.532													8	91					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7721318	7721318	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7721318G>A	uc002giu.1	+	67	10305	c.10291G>A	c.(10291-10293)GCC>ACC	p.A3431T	DNAH2_uc010cnm.1_Missense_Mutation_p.A369T	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3431	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CCTAGAACACGCCATTCACTT	0.532													19	155					0	0	1	0	0	
KDM6B	23135	broad.mit.edu	37	17	7750893	7750893	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7750893G>A	uc002giw.1	+	11	1663	c.1287G>A	c.(1285-1287)GCG>GCA	p.A429A	KDM6B_uc002gix.2_5'UTR	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	429	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						AAACTCCCGCGCTGGAGGTCT	0.537													18	32					0	0	1	0	0	
CHD3	1107	broad.mit.edu	37	17	7807305	7807305	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7807305A>G	uc002gje.2	+	24	4040	c.3890A>G	c.(3889-3891)GAC>GGC	p.D1297G	CHD3_uc002gjd.2_Missense_Mutation_p.D1356G|CHD3_uc002gjf.2_Missense_Mutation_p.D1297G|CHD3_uc002gjh.2_5'UTR|SCARNA21_uc002gji.1_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1297					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CGGGAAGAAGACAAGGTGAGA	0.527													4	75					0	0	1	0	0	
CHD3	1107	broad.mit.edu	37	17	7813856	7813856	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:7813856C>T	uc002gje.2	+	38	5851	c.5701C>T	c.(5701-5703)CGC>TGC	p.R1901C	CHD3_uc002gjd.2_Missense_Mutation_p.R1960C|CHD3_uc002gjf.2_Missense_Mutation_p.R1867C|CHD3_uc002gjh.2_Missense_Mutation_p.R478C|CHD3_uc002gjj.2_Missense_Mutation_p.R64C	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1901	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GATGTCCGAGCGCAGCATCCT	0.642													8	48					0	0	1	0	0	
CCDC42	146849	broad.mit.edu	37	17	8638542	8638542	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:8638542C>T	uc002gln.2	-	6	972	c.745G>A	c.(745-747)GCA>ACA	p.A249T	CCDC42_uc002glo.2_Missense_Mutation_p.A175T	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	249										ovary(1)	1						TTCTTGGCTGCGGTGTTCTGG	0.478													11	36					0	0	1	0	0	
MYH13	8735	broad.mit.edu	37	17	10265498	10265498	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:10265498G>A	uc002gmk.1	-	5	532	c.442C>T	c.(442-444)CGC>TGC	p.R148C		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	148	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCTCCTGGCGCTTTTTGCCT	0.522													12	145					0	0	1	0	0	
TEKT3	64518	broad.mit.edu	37	17	15215749	15215749	+	Missense_Mutation	SNP	G	A	A	rs147750959	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:15215749G>A	uc002gon.2	-	7	1115	c.928C>T	c.(928-930)CGC>TGC	p.R310C		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	310					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		CTCTGGGAGCGGAGAATATTG	0.458													5	65					0	0	1	0	0	
TBC1D26	353149	broad.mit.edu	37	17	15644464	15644464	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:15644464G>A	uc010cov.2	+	10	825	c.575G>A	c.(574-576)CGC>CAC	p.R192H	TBC1D26_uc002gpb.3_RNA	NM_178571	NP_848666	Q86UD7	TBC26_HUMAN	TBC1 domain family, member 26	192	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.078)		GACCTGAGCCGCATCACTGCC	0.592													15	59					0	0	1	0	0	
NCOR1	9611	broad.mit.edu	37	17	15961030	15961030	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:15961030C>T	uc002gpo.2	-	40	6430	c.6190G>A	c.(6190-6192)GCT>ACT	p.A2064T	NCOR1_uc002gpn.2_Missense_Mutation_p.A1961T|NCOR1_uc002gpl.2_Missense_Mutation_p.A79T|NCOR1_uc002gpm.2_Missense_Mutation_p.A584T|NCOR1_uc010vwb.1_Missense_Mutation_p.A648T|NCOR1_uc010coy.2_Missense_Mutation_p.A972T|NCOR1_uc010vwc.1_Missense_Mutation_p.A874T	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	2064	Interaction with C1D (By similarity).|ID1 (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGATTTCTAGCAAAATCTTGT	0.368													22	60					0	0	1	0	0	
RAI1	10743	broad.mit.edu	37	17	17698552	17698552	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:17698552G>T	uc002grm.2	+	3	2759	c.2290G>T	c.(2290-2292)GAG>TAG	p.E764*	RAI1_uc002grn.1_Nonsense_Mutation_p.E764*	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	764						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		GCACCCTGGCGAGCTTACCAA	0.642													16	65					1.5739e-10	1.6968e-10	1	1	0	
FLII	2314	broad.mit.edu	37	17	18148464	18148464	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:18148464C>A	uc002gsr.1	-	30	3849	c.3798G>T	c.(3796-3798)AAG>AAT	p.K1266N	FLII_uc002gsq.1_Missense_Mutation_p.K1137N|FLII_uc010cpy.1_Missense_Mutation_p.K1255N|FLII_uc010vxn.1_Missense_Mutation_p.K1235N|FLII_uc010vxo.1_Missense_Mutation_p.K1211N	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	1266					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					AGGCCAGGGCCTTGCAGAAGG	0.632													10	103					6.40141e-05	6.65405e-05	1	1	0	
PRPSAP2	5636	broad.mit.edu	37	17	18833976	18833976	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:18833976T>C	uc002gup.1	+	12	1286	c.1075T>C	c.(1075-1077)TCC>CCC	p.S359P	PRPSAP2_uc002guo.1_Missense_Mutation_p.S273P|PRPSAP2_uc010vyi.1_Missense_Mutation_p.S307P|PRPSAP2_uc010vyj.1_Missense_Mutation_p.S273P|PRPSAP2_uc010vyk.1_Missense_Mutation_p.S298P|PRPSAP2_uc002guq.1_Missense_Mutation_p.S146P	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	359					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						GGAGTCCATGTCCTACCTTTT	0.478													6	35					0	0	1	0	0	
NOS2	4843	broad.mit.edu	37	17	26105782	26105782	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:26105782C>T	uc002gzu.2	-	11	1479	c.1215G>A	c.(1213-1215)AAG>AAA	p.K405K	NOS2_uc010crh.1_Silent_p.K405K|NOS2_uc010wab.1_Silent_p.K405K	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	405					arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	GCGAGGCCAGCTTGTGCGTTT	0.547													32	81					0	0	1	0	0	
SPAG5	10615	broad.mit.edu	37	17	26911493	26911493	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:26911493G>A	uc002hbq.2	-	12	2259	c.2167C>T	c.(2167-2169)CGG>TGG	p.R723W	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	723	Gln-rich.				cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					AACTGAGCCCGGAGATCTAGA	0.498													10	148					0	0	1	0	0	
SGK494	124923	broad.mit.edu	37	17	26940691	26940691	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:26940691G>A	uc002hbr.1	-	2	123	c.91C>T	c.(91-93)CGG>TGG	p.R31W	SGK494_uc010waq.1_Missense_Mutation_p.R31W|SGK494_uc010war.1_RNA|uc010crq.1_5'Flank|uc002hbs.1_Intron	NM_144610	NP_653211			uncharacterized serine/threonine-protein kinase												0						CAGGGACCCCGGATGTTGCCA	0.572											OREG0024279	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	40					0	0	1	0	0	
MYO18A	399687	broad.mit.edu	37	17	27424848	27424848	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:27424848G>A	uc002hdt.1	-	26	4218	c.4060C>T	c.(4060-4062)CGG>TGG	p.R1354W	MYO18A_uc010wbc.1_Missense_Mutation_p.R896W|MYO18A_uc002hds.2_Missense_Mutation_p.R896W|MYO18A_uc010csa.1_Missense_Mutation_p.R1354W|MYO18A_uc002hdu.1_Missense_Mutation_p.R1354W|MYO18A_uc010wbd.1_Missense_Mutation_p.R1023W	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1354	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TCCGCTGCCCGGATGAGACGG	0.592													40	108					0	0	1	0	0	
MYO18A	399687	broad.mit.edu	37	17	27438750	27438750	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:27438750A>G	uc002hdt.1	-	16	2888	c.2730T>C	c.(2728-2730)GGT>GGC	p.G910G	MYO18A_uc010wbc.1_Silent_p.G452G|MYO18A_uc002hds.2_Silent_p.G452G|MYO18A_uc010csa.1_Silent_p.G910G|MYO18A_uc002hdu.1_Silent_p.G910G|MYO18A_uc010wbd.1_Silent_p.G579G	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	910	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CTTTTTTGTCACCTTCCTGGG	0.612											OREG0024287	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	31					0	0	1	0	0	
SSH2	85464	broad.mit.edu	37	17	27963595	27963595	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:27963595T>C	uc002heo.1	-	14	1572	c.1572A>G	c.(1570-1572)AAA>AAG	p.K524K	SSH2_uc010wbh.1_Silent_p.K551K	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	524					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						TCATTCTTTCTTTGGTACACA	0.433													31	59					0	0	1	0	0	
SLC6A4	6532	broad.mit.edu	37	17	28545192	28545192	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:28545192G>A	uc002hey.3	-	5	1186	c.642C>T	c.(640-642)TCC>TCT	p.S214S		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	214	Extracellular (Potential).				response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TGTTGTCCTCGGAGAAGTAAT	0.557													17	44					0	0	1	0	0	
CPD	1362	broad.mit.edu	37	17	28791624	28791624	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:28791624T>C	uc002hfb.1	+	21	3950	c.3935T>C	c.(3934-3936)TTG>TCG	p.L1312S	CPD_uc010wbo.1_Missense_Mutation_p.L1065S|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	1312	Helical; (Potential).				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						ATGTCGGCATTGATCCTAACA	0.388													19	166					0	0	1	0	0	
RAB11FIP4	84440	broad.mit.edu	37	17	29848367	29848367	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:29848367G>A	uc002hgn.1	+	5	976	c.747G>A	c.(745-747)TCG>TCA	p.S249S	RAB11FIP4_uc002hgo.2_Silent_p.S147S	NM_032932	NP_116321	Q86YS3	RFIP4_HUMAN	RAB11 family interacting protein 4 (class II)	249	Necessary for interaction with RAB11A, subcellular location, homo- or heterooligomerization.				cytokinesis|interspecies interaction between organisms|protein transport	cleavage furrow|endocytic vesicle|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding			skin(1)	1		all_cancers(10;3.62e-13)|all_epithelial(10;0.000387)|all_lung(9;0.0132)|Breast(31;0.014)|all_hematologic(16;0.015)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0259)|Ovarian(249;0.0423)|Lung NSC(157;0.066)				TGGGGTCTTCGGTGTCTTCCA	0.582													10	26					0	0	1	0	0	
AP2B1	163	broad.mit.edu	37	17	33954489	33954489	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:33954489A>G	uc002hjr.2	+	8	1213	c.1024A>G	c.(1024-1026)ATG>GTG	p.M342V	AP2B1_uc002hjq.2_Missense_Mutation_p.M342V|AP2B1_uc010wci.1_Missense_Mutation_p.M304V|AP2B1_uc002hjs.2_Missense_Mutation_p.M285V|AP2B1_uc002hjt.2_Missense_Mutation_p.M342V|AP2B1_uc010ctv.2_Missense_Mutation_p.M342V|AP2B1_uc010wcj.1_Missense_Mutation_p.M79V	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	342					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		GTTGGACATCATGATTCGTTT	0.403													21	47					0	0	1	0	0	
MMP28	79148	broad.mit.edu	37	17	34106043	34106043	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:34106043G>T	uc002hjy.1	-	3	487	c.228C>A	c.(226-228)GGC>GGA	p.G76G	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA|MMP28_uc002hka.2_Silent_p.G76G	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	76					proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GGTCCAACACGCCGCTGACAG	0.617													7	20					2.0095e-06	2.11708e-06	1	1	0	
ACACA	31	broad.mit.edu	37	17	35580491	35580491	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:35580491T>A	uc002hnm.2	-	28	3586	c.3395A>T	c.(3394-3396)GAT>GTT	p.D1132V	ACACA_uc002hnk.2_Missense_Mutation_p.D1054V|ACACA_uc002hnl.2_Missense_Mutation_p.D1074V|ACACA_uc002hnn.2_Missense_Mutation_p.D1132V|ACACA_uc002hno.2_Missense_Mutation_p.D1169V|ACACA_uc010cuz.2_Missense_Mutation_p.D1132V	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	1132					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGGTAGGACATCAAAAATAGA	0.383													22	57					0	0	1	0	0	
SRCIN1	80725	broad.mit.edu	37	17	36720452	36720452	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:36720452G>A	uc002hqd.2	-	4	668	c.443C>T	c.(442-444)TCG>TTG	p.S148L	SRCIN1_uc002hqf.1_5'Flank|SRCIN1_uc002hqe.2_Missense_Mutation_p.S2L|SRCIN1_uc002hqh.1_Missense_Mutation_p.S208L	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	Error:Variant_position_missing_in_Q9C0H9_after_alignment					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						CTCGGCCTCCGACATGGTCTC	0.692													5	7					0	0	1	0	0	
GRB7	2886	broad.mit.edu	37	17	37902041	37902041	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:37902041G>A	uc002hsr.2	+	12	1520	c.1270G>A	c.(1270-1272)GCC>ACC	p.A424T	GRB7_uc002hss.2_Missense_Mutation_p.A424T|GRB7_uc010cwc.2_Missense_Mutation_p.A424T|GRB7_uc002hst.2_Missense_Mutation_p.A424T	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	424					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCTCAGTGCAGGTGGGTGACG	0.632													15	30					0	0	1	0	0	
GSDMA	284110	broad.mit.edu	37	17	38133118	38133118	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:38133118T>C	uc002htl.1	+	12	1263	c.1145T>C	c.(1144-1146)TTC>TCC	p.F382S	GSDMA_uc002htm.1_Missense_Mutation_p.F382S	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	382					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						GAGGGTGTTTTCCCCCTGCAA	0.557													29	79					0	0	1	0	0	
CCR7	1236	broad.mit.edu	37	17	38711960	38711960	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:38711960T>C	uc002huw.2	-	3	234	c.171A>G	c.(169-171)AAA>AAG	p.K57K		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	57	Extracellular (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				GGAACCAGGCTTTAAAGTTCC	0.483													7	56					0	0	1	0	0	
SMARCE1	6605	broad.mit.edu	37	17	38792670	38792670	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:38792670A>C	uc002hux.2	-	6	470	c.346T>G	c.(346-348)TTA>GTA	p.L116V	SMARCE1_uc010wff.1_Missense_Mutation_p.L81V|SMARCE1_uc010wfg.1_Missense_Mutation_p.L46V|SMARCE1_uc002huy.2_Missense_Mutation_p.L81V|SMARCE1_uc010wfh.1_Missense_Mutation_p.L46V|SMARCE1_uc010wfi.1_Missense_Mutation_p.L98V|SMARCE1_uc002huz.1_Missense_Mutation_p.L81V|SMARCE1_uc010wfj.1_Missense_Mutation_p.L98V	NM_003079	NP_003070	Q969G3	SMCE1_HUMAN	SWI/SNF-related matrix-associated	116	HMG box.				chromatin modification|negative regulation of transcription, DNA-dependent|nervous system development|nucleosome disassembly|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nuclear chromosome|SWI/SNF complex|transcriptional repressor complex	chromatin binding|DNA binding|N-acetyltransferase activity|protein binding|protein N-terminus binding|transcription coactivator activity				0		Breast(137;0.000812)				TATTCGTTTAAATATTCTTGT	0.388													24	192					0	0	1	0	0	
KRT28	162605	broad.mit.edu	37	17	38953225	38953225	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:38953225G>A	uc002hvh.1	-	5	987	c.921C>T	c.(919-921)ACC>ACT	p.T307T		NM_181535	NP_853513	Q7Z3Y7	K1C28_HUMAN	keratin 25D	307	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GCCTCATCTCGGTGAGCTGGC	0.617													25	64					0	0	1	0	0	
KRT23	25984	broad.mit.edu	37	17	39092710	39092710	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:39092710G>A	uc002hvm.1	-	2	735	c.146C>T	c.(145-147)ACG>ATG	p.T49M	KRT23_uc010wfl.1_Intron|KRT23_uc010cxf.1_Intron|KRT23_uc010cxg.2_Missense_Mutation_p.T49M|KRT23_uc002hvn.1_Missense_Mutation_p.T49M	NM_015515	NP_056330	Q9C075	K1C23_HUMAN	keratin 23	49	Head.					intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)|Ovarian(249;0.15)				GCAGCTCCGCGTGGTGAAGGA	0.687													13	40					0	0	1	0	0	
KRTAP1-1	81851	broad.mit.edu	37	17	39197586	39197586	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:39197586A>G	uc002hvw.1	-	1	128	c.64T>C	c.(64-66)TCC>CCC	p.S22P		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	22			Missing (in allele KAP1.7).|PSCSTSGTCGSSCCQPSCCETSSCQPRCCETSCCQPSCCQT SFCGFP -> R (in allele KAP1.6).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CAGCAGCTGGAGCCGCAGGTC	0.612													6	58					0	0	1	0	0	
KRT32	3882	broad.mit.edu	37	17	39622023	39622023	+	Splice_Site	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:39622023A>G	uc002hwr.2	-	3	769	c.708_splice	c.e3+1	p.E236_splice		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32						epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				TTCCAGCCTCACCTCCTCATG	0.403													5	73					0	0	1	0	0	
KRT9	3857	broad.mit.edu	37	17	39723536	39723536	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:39723536A>G	uc002hxe.3	-	7	1927	c.1861T>C	c.(1861-1863)TCC>CCC	p.S621P	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	621	Tail.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TAGGAATGGGATGATTTtccg	0.239													14	70					0	0	1	0	0	
CNP	1267	broad.mit.edu	37	17	40120397	40120397	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:40120397G>A	uc002hyl.1	+	2	459	c.315G>A	c.(313-315)GAG>GAA	p.E105E	CNP_uc002hyk.1_Silent_p.E105E|CNP_uc010wfz.1_Intron|CNP_uc002hym.1_Silent_p.E85E|CNP_uc010wga.1_Intron	NM_033133	NP_149124	P09543	CN37_HUMAN	2',3'-cyclic nucleotide 3' phosphodiesterase	105					cell killing|cyclic nucleotide catabolic process|RNA metabolic process|synaptic transmission	extracellular space|melanosome	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity|ATP binding|protein binding				0		all_cancers(22;2.38e-06)|all_epithelial(22;6.79e-05)|Breast(137;0.000143)		UCEC - Uterine corpus endometrioid carcinoma (308;0.171)		GGCTCGATGAGGACCTGGCTG	0.592													4	30					0	0	1	0	0	
KCNH4	23415	broad.mit.edu	37	17	40312256	40312256	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:40312256C>T	uc002hzb.2	-	16	3189	c.2856G>A	c.(2854-2856)ACG>ACA	p.T952T		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	952	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CTTCAGCAAGCGTAGTATCCT	0.617													6	69					0	0	1	0	0	
WNK4	65266	broad.mit.edu	37	17	40948272	40948272	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:40948272G>A	uc002ibj.2	+	17	3584	c.3563G>A	c.(3562-3564)CGC>CAC	p.R1188H	WNK4_uc010wgx.1_Missense_Mutation_p.R852H|CCDC56_uc010wgz.1_Intron|CNTD1_uc002ibm.3_5'Flank|CNTD1_uc010wha.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	1188					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CGCCAGCGCCGCCTCTCCAAG	0.612													3	4					0	0	1	0	0	
DHX8	1659	broad.mit.edu	37	17	41585055	41585055	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:41585055A>G	uc002idu.1	+	14	2181	c.2108A>G	c.(2107-2109)AAG>AGG	p.K703R	DHX8_uc010wif.1_Missense_Mutation_p.K612R|DHX8_uc010wig.1_Missense_Mutation_p.K703R	NM_004941	NP_004932	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	703	Helicase ATP-binding.					catalytic step 2 spliceosome	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|pancreas(1)	4		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		TTGTTGAAAAAGGTAACTAGA	0.448													9	121					0	0	1	0	0	
MPP2	4355	broad.mit.edu	37	17	41960294	41960294	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:41960294G>A	uc010wip.1	-	5	622	c.565C>T	c.(565-567)CGC>TGC	p.R189C	MPP2_uc002ien.1_Missense_Mutation_p.R161C|MPP2_uc010wim.1_Missense_Mutation_p.R133C|MPP2_uc002ieo.1_Missense_Mutation_p.R144C|MPP2_uc010win.1_Missense_Mutation_p.R5C|MPP2_uc010wio.1_Missense_Mutation_p.R133C|MPP2_uc010czm.1_Missense_Mutation_p.R127C	NM_005374	NP_005365	Q14168	MPP2_HUMAN	palmitoylated membrane protein 2	168					signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity				0		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		GCTGTCTTGCGGATGCCCACC	0.592													21	240					0	0	1	0	0	
ITGA2B	3674	broad.mit.edu	37	17	42461924	42461924	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:42461924C>T	uc002igt.1	-	8	861	c.829G>A	c.(829-831)GGG>AGG	p.G277R		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	277	Potential.|Extracellular (Potential).|FG-GAP 4.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	TTGAGATCCCCGTCGAACTCG	0.562													26	63					0	0	1	0	0	
ADAM11	4185	broad.mit.edu	37	17	42837183	42837183	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:42837183G>A	uc002ihh.2	+	2	155	c.155G>A	c.(154-156)CGT>CAT	p.R52H	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	52					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GAACCCAGCCGTCTGGTTAGG	0.692													11	15					0	0	1	0	0	
ADAM11	4185	broad.mit.edu	37	17	42855087	42855087	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:42855087C>T	uc002ihh.2	+	23	1926	c.1926C>T	c.(1924-1926)GAC>GAT	p.D642D	ADAM11_uc010wjd.1_Silent_p.D442D|ADAM11_uc002ihi.2_Translation_Start_Site	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	642	Cys-rich.|Extracellular (Potential).				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				AGCTGGCGGACGGCTCTGACC	0.632													20	50					0	0	1	0	0	
MAP3K14	9020	broad.mit.edu	37	17	43345039	43345039	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:43345039T>C	uc002iiw.1	-	13	2169	c.2060A>G	c.(2059-2061)CAT>CGT	p.H687R	LOC100133991_uc010dah.2_Intron|LOC100133991_uc002iit.3_Intron|LOC100133991_uc010dai.2_Intron|MAP3K14_uc002iiu.1_Missense_Mutation_p.H217R|MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_Missense_Mutation_p.H271R	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	687					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CGGCTGGGCATGGAGGGTCTG	0.587													11	106					0	0	1	0	0	
SP2	6668	broad.mit.edu	37	17	45993853	45993853	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:45993853A>G	uc002imk.2	+	3	553	c.416A>G	c.(415-417)CAG>CGG	p.Q139R	SP2_uc002iml.2_Missense_Mutation_p.Q132R|uc002imm.2_Intron	NM_003110	NP_003101	Q02086	SP2_HUMAN	Sp2 transcription factor	139					immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|histone deacetylase binding|zinc ion binding				0						CCTCAGATTCAGGCAAGCAAT	0.542													12	91					0	0	1	0	0	
SP2	6668	broad.mit.edu	37	17	46002400	46002400	+	Silent	SNP	C	T	T	rs138122841		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:46002400C>T	uc002imk.2	+	5	1625	c.1488C>T	c.(1486-1488)CCC>CCT	p.P496P	SP2_uc002iml.2_Silent_p.P489P	NM_003110	NP_003101	Q02086	SP2_HUMAN	Sp2 transcription factor	496					immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|histone deacetylase binding|zinc ion binding				0						AGACCCAGCCCGGGGAGAAGC	0.607													7	54					0	0	1	0	0	
LRRC59	55379	broad.mit.edu	37	17	48472334	48472334	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:48472334C>T	uc002iqt.2	-	2	275	c.121G>A	c.(121-123)GCC>ACC	p.A41T		NM_018509	NP_060979	Q96AG4	LRC59_HUMAN	leucine rich repeat containing 59	41	Cytoplasmic (Potential).|LRR 2.					endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial nucleoid	protein binding			central_nervous_system(1)	1	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			AGGATGGTGGCCTTTGGAAGG	0.453													6	43					0	0	1	0	0	
SPATA20	64847	broad.mit.edu	37	17	48632944	48632944	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:48632944C>T	uc002irf.2	+	16	2423	c.2282C>T	c.(2281-2283)ACT>ATT	p.T761I	SPATA20_uc002irc.2_Missense_Mutation_p.T428I|SPATA20_uc002ire.2_Missense_Mutation_p.T717I|SPATA20_uc002ird.2_Missense_Mutation_p.T777I|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	761					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			GACCAGGCCACTGCATATGTG	0.572													11	59					0	0	1	0	0	
CACNA1G	8913	broad.mit.edu	37	17	48692826	48692826	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:48692826G>A	uc002irk.1	+	27	5236	c.4864G>A	c.(4864-4866)GGG>AGG	p.G1622R	CACNA1G_uc002irj.1_Missense_Mutation_p.G1588R|CACNA1G_uc002irl.1_Missense_Mutation_p.G1599R|CACNA1G_uc002irm.1_Missense_Mutation_p.G1588R|CACNA1G_uc002irn.1_Missense_Mutation_p.G1581R|CACNA1G_uc002iro.1_Missense_Mutation_p.G1588R|CACNA1G_uc002irp.1_Missense_Mutation_p.G1622R|CACNA1G_uc002irq.1_Missense_Mutation_p.G1599R|CACNA1G_uc002irr.1_Missense_Mutation_p.G1622R|CACNA1G_uc002irs.1_Missense_Mutation_p.G1611R|CACNA1G_uc002irt.1_Missense_Mutation_p.G1604R|CACNA1G_uc002irv.1_Missense_Mutation_p.G1611R|CACNA1G_uc002irw.1_Missense_Mutation_p.G1599R|CACNA1G_uc002iru.1_Missense_Mutation_p.G1588R|CACNA1G_uc002irx.1_Missense_Mutation_p.G1535R|CACNA1G_uc002iry.1_Missense_Mutation_p.G1524R|CACNA1G_uc002irz.1_Missense_Mutation_p.G1535R|CACNA1G_uc002isa.1_Missense_Mutation_p.G1501R|CACNA1G_uc002isb.1_Missense_Mutation_p.G1542R|CACNA1G_uc002isc.1_Missense_Mutation_p.G1524R|CACNA1G_uc002isd.1_Missense_Mutation_p.G1517R|CACNA1G_uc002ise.1_Missense_Mutation_p.G1490R|CACNA1G_uc002isf.1_Missense_Mutation_p.G1517R|CACNA1G_uc002isg.1_Missense_Mutation_p.G1483R|CACNA1G_uc002ish.1_Missense_Mutation_p.G1490R|CACNA1G_uc002isi.1_Missense_Mutation_p.G1478R	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1622	IV.|Helical; Name=S1 of repeat IV; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	AGGTGTCATCGGGCTGAACGT	0.612													9	31					0	0	1	0	0	
CACNA1G	8913	broad.mit.edu	37	17	48703460	48703460	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:48703460C>T	uc002irk.1	+	38	6854	c.6482C>T	c.(6481-6483)CCG>CTG	p.P2161L	CACNA1G_uc002irj.1_Intron|CACNA1G_uc002irl.1_Missense_Mutation_p.P2045L|CACNA1G_uc002irm.1_Missense_Mutation_p.P2082L|CACNA1G_uc002irn.1_Missense_Mutation_p.P2027L|CACNA1G_uc002iro.1_Missense_Mutation_p.P2034L|CACNA1G_uc002irp.1_Missense_Mutation_p.P2116L|CACNA1G_uc002irq.1_Missense_Mutation_p.P2138L|CACNA1G_uc002irr.1_Missense_Mutation_p.P2068L|CACNA1G_uc002irs.1_Missense_Mutation_p.P2105L|CACNA1G_uc002irt.1_Missense_Mutation_p.P2050L|CACNA1G_uc002irv.1_Missense_Mutation_p.P2057L|CACNA1G_uc002irw.1_Missense_Mutation_p.P2090L|CACNA1G_uc002iru.1_Missense_Mutation_p.P2127L|CACNA1G_uc002irx.1_Intron|CACNA1G_uc002iry.1_Intron|CACNA1G_uc002irz.1_Missense_Mutation_p.P1974L|CACNA1G_uc002isa.1_Missense_Mutation_p.P1947L|CACNA1G_uc002isb.1_Missense_Mutation_p.P1988L|CACNA1G_uc002isc.1_Missense_Mutation_p.P2063L|CACNA1G_uc002isd.1_Missense_Mutation_p.P1956L|CACNA1G_uc002ise.1_Missense_Mutation_p.P1984L|CACNA1G_uc002isf.1_Missense_Mutation_p.P2011L|CACNA1G_uc002isg.1_Missense_Mutation_p.P1929L|CACNA1G_uc002ish.1_Missense_Mutation_p.P1936L|CACNA1G_uc002isi.1_Missense_Mutation_p.P1924L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2161	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGGCCCTCCCCGCCCCTGGCC	0.642											OREG0024569	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	35					0	0	1	0	0	
LUC7L3	51747	broad.mit.edu	37	17	48822104	48822104	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:48822104T>C	uc002isr.2	+	7	740	c.623T>C	c.(622-624)GTA>GCA	p.V208A	LUC7L3_uc002isp.1_Missense_Mutation_p.V132A|LUC7L3_uc010wmw.1_Missense_Mutation_p.V132A|LUC7L3_uc002isq.2_Missense_Mutation_p.V208A|LUC7L3_uc002iss.2_Missense_Mutation_p.V208A	NM_006107	NP_006098	O95232	LC7L3_HUMAN	LUC7-like 3	208					apoptosis|mRNA processing|response to stress|RNA splicing	focal adhesion|nuclear speck	DNA binding|mRNA binding|protein binding				0						CAGTCCCGGGTAGATGACCAT	0.328													4	80					0	0	1	0	0	
KIF2B	84643	broad.mit.edu	37	17	51902173	51902173	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:51902173A>C	uc002iua.2	+	1	1935	c.1779A>C	c.(1777-1779)AAA>AAC	p.K593N	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	593					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGGAGCAGAAAGAGATTGAAG	0.418													6	97					0	0	1	0	0	
STXBP4	252983	broad.mit.edu	37	17	53077036	53077036	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:53077036G>A	uc002iuf.1	+	6	538	c.331G>A	c.(331-333)GAC>AAC	p.D111N	STXBP4_uc010dcc.1_Missense_Mutation_p.D36N|STXBP4_uc010dcd.1_Missense_Mutation_p.D111N	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	111						cytoplasm	calcium ion binding			ovary(1)	1						ACAAAAATCCGACAACATTCA	0.353													9	38					0	0	1	0	0	
BZRAP1	9256	broad.mit.edu	37	17	56389881	56389881	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:56389881A>G	uc002ivx.3	-	17	3172	c.2301T>C	c.(2299-2301)CCT>CCC	p.P767P	BZRAP1_uc010dcs.2_Silent_p.P707P|BZRAP1_uc010wnt.1_Silent_p.P767P	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	767						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCTCCTCCTCAGGTCTGGGCT	0.657													20	86					0	0	1	0	0	
BZRAP1	9256	broad.mit.edu	37	17	56389972	56389972	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:56389972C>G	uc002ivx.3	-	17	3081	c.2210G>C	c.(2209-2211)AGC>ACC	p.S737T	BZRAP1_uc010dcs.2_Missense_Mutation_p.S677T|BZRAP1_uc010wnt.1_Missense_Mutation_p.S737T	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	737						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AGGGCCTGAGCTGTGGGACAA	0.612													9	80					0	0	1	0	0	
SUPT4H1	6827	broad.mit.edu	37	17	56424934	56424934	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:56424934A>G	uc002iwe.1	-	3	255	c.188T>C	c.(187-189)ATG>ACG	p.M63T	uc010dct.1_Intron|uc010dcu.1_Intron|uc002ivz.2_Intron|uc010dcv.1_Intron|uc002iwa.2_Intron|uc002iwb.2_Intron|uc002iwc.2_Intron|SUPT4H1_uc002iwd.1_RNA	NM_003168	NP_003159	P63272	SPT4H_HUMAN	suppressor of Ty 4 homolog 1	63					chromatin remodeling|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGGACTCATCATCGCAATGAT	0.498													6	54					0	0	1	0	0	
TLK2	11011	broad.mit.edu	37	17	60657500	60657500	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:60657500A>G	uc010ddp.2	+	16	1649	c.1381A>G	c.(1381-1383)AGA>GGA	p.R461G	TLK2_uc002izx.3_Missense_Mutation_p.R287G|TLK2_uc002izz.3_Missense_Mutation_p.R439G|TLK2_uc002jaa.3_Missense_Mutation_p.R407G|TLK2_uc010wpd.1_Missense_Mutation_p.R407G	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	461					cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						GCTAAATGACAGATATTTGTT	0.403													3	53					0	0	1	0	0	
SMURF2	64750	broad.mit.edu	37	17	62551006	62551006	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:62551006A>G	uc002jep.1	-	15	2104	c.1716T>C	c.(1714-1716)CCT>CCC	p.P572P	SMURF2_uc002jeq.1_Silent_p.P331P|SMURF2_uc002jer.1_Silent_p.P331P	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	572	HECT.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			CTTCATTAACAGGGATACTTT	0.313													5	53					0	0	1	0	0	
CCDC46	201134	broad.mit.edu	37	17	64049989	64049989	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:64049989A>G	uc002jfl.2	-	12	1302	c.1083T>C	c.(1081-1083)AAT>AAC	p.N361N	CCDC46_uc010deo.2_Silent_p.N103N|CCDC46_uc002jfm.2_Silent_p.N361N|CCDC46_uc010dep.2_Silent_p.N319N	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	361	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			CTGCTACAGCATTGTGAAGCT	0.338													6	76					0	0	1	0	0	
BPTF	2186	broad.mit.edu	37	17	65888143	65888143	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:65888143G>A	uc002jgf.2	+	5	2109	c.2048G>A	c.(2047-2049)GGC>GAC	p.G683D	BPTF_uc002jge.2_Missense_Mutation_p.G809D|BPTF_uc010wqm.1_Missense_Mutation_p.G746D	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	809					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TTTAAGGAGGGCAAAGAGGTG	0.388													14	27					0	0	1	0	0	
LOC651250	651250	broad.mit.edu	37	17	66122838	66122838	+	RNA	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:66122838T>C	uc002jgq.2	+	6		c.1961T>C			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						CCAGATAACATGAGAAATGAA	0.502													16	80					0	0	1	0	0	
ABCA9	10350	broad.mit.edu	37	17	66982372	66982372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:66982372G>A	uc002jhu.2	-	32	4284	c.4141C>T	c.(4141-4143)CAG>TAG	p.Q1381*	ABCA9_uc010dez.2_Nonsense_Mutation_p.Q1343*	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1381	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					TCCAGGTGCTGCCTCACTGTC	0.607													38	87					0	0	1	0	0	
ABCA10	10349	broad.mit.edu	37	17	67170783	67170783	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:67170783C>A	uc010dfa.1	-	25	3892	c.3013G>T	c.(3013-3015)GGA>TGA	p.G1005*	ABCA10_uc010wqs.1_Intron|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1005	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					AGCTGGAATCCCAGAAATATG	0.343													10	122					0.00136819	0.00140093	1	1	0	
ABCA10	10349	broad.mit.edu	37	17	67210857	67210857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:67210857G>A	uc010dfa.1	-	10	1873	c.994C>T	c.(994-996)CGA>TGA	p.R332*	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'UTR|ABCA10_uc010dfc.1_Nonsense_Mutation_p.R224*	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	332					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GGTAAAACTCGCTCAAAATAT	0.279													9	86					0	0	1	0	0	
SLC39A11	201266	broad.mit.edu	37	17	70943934	70943934	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:70943934A>G	uc002jjb.2	-	5	502	c.387T>C	c.(385-387)GGT>GGC	p.G129G	SLC39A11_uc002jja.2_Silent_p.G129G|SLC39A11_uc002jjc.1_Silent_p.G129G	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1	129					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						GCAGCGCGGGACCCTCAGGAT	0.547													5	72					0	0	1	0	0	
CDC42EP4	23580	broad.mit.edu	37	17	71281599	71281599	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:71281599A>G	uc002jjn.2	-	2	1188	c.1041T>C	c.(1039-1041)GAT>GAC	p.D347D	CDC42EP4_uc002jjo.2_Silent_p.D347D|CDC42EP4_uc002jjp.1_Silent_p.D277D	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	347					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			CCTCCTCCTCATCCATGAAGG	0.637													12	121					0	0	1	0	0	
SDK2	54549	broad.mit.edu	37	17	71398134	71398134	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:71398134G>A	uc010dfm.2	-	19	2631	c.2631C>T	c.(2629-2631)CCC>CCT	p.P877P	SDK2_uc002jjt.3_Silent_p.P36P|SDK2_uc010dfn.2_Silent_p.P556P	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	877	Fibronectin type-III 3.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GCCCGTCCCCGGGGGTGGTGA	0.657													8	15					0	0	1	0	0	
OTOP3	347741	broad.mit.edu	37	17	72945440	72945440	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:72945440G>A	uc010wrr.1	+	7	1720	c.1720G>A	c.(1720-1722)GGC>AGC	p.G574S	OTOP3_uc010wrq.1_Missense_Mutation_p.G556S	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	574	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CGTCAACTTCGGCCTGCCTCT	0.592													7	91					0	0	1	0	0	
LLGL2	3993	broad.mit.edu	37	17	73568034	73568034	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:73568034C>T	uc002joh.2	+	19	2503	c.2349C>T	c.(2347-2349)GAC>GAT	p.D783D	LLGL2_uc002joi.2_Silent_p.D783D|LLGL2_uc010dgg.1_Silent_p.D783D|LLGL2_uc002joj.2_Silent_p.D772D|LLGL2_uc010wsd.1_Silent_p.D410D	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	783	WD 12.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TGGTGCTCGACGGACACAGCG	0.657													5	30					0	0	1	0	0	
ITGB4	3691	broad.mit.edu	37	17	73747158	73747158	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:73747158C>T	uc002jpg.2	+	30	3946	c.3759C>T	c.(3757-3759)TAC>TAT	p.Y1253Y	ITGB4_uc002jph.2_Silent_p.Y1253Y|ITGB4_uc002jpi.3_Silent_p.Y1253Y|ITGB4_uc002jpj.2_Silent_p.Y1253Y	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1253	Fibronectin type-III 2.|Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCACAGCCTACGAGGTCTGCT	0.597													18	53					0	0	1	0	0	
FBF1	85302	broad.mit.edu	37	17	73916363	73916363	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:73916363C>T	uc002jqc.2	-	17	2051	c.1777G>A	c.(1777-1779)GAG>AAG	p.E593K	FBF1_uc002jqa.1_RNA|FBF1_uc010wsp.1_Missense_Mutation_p.E584K|FBF1_uc002jqd.1_Missense_Mutation_p.E594K|FBF1_uc002jqb.2_5'Flank|FBF1_uc010dgr.1_5'UTR	NM_001080542	NP_001074011	Q8TES7	FBF1_HUMAN	Fas (TNFRSF6) binding factor 1	593											0						ACCTGGGCCTCCAGCTCTGCC	0.667													6	14					0	0	1	0	0	
ACOX1	51	broad.mit.edu	37	17	73946860	73946860	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:73946860C>T	uc002jqf.2	-	9	1583	c.1293G>A	c.(1291-1293)ACG>ACA	p.T431T	ACOX1_uc010wsq.1_Silent_p.T393T|ACOX1_uc002jqe.2_Silent_p.T431T|ACOX1_uc010wsr.1_Silent_p.T363T	NM_007292	NP_009223	Q15067	ACOX1_HUMAN	acyl-Coenzyme A oxidase 1 isoform b	431					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|prostaglandin metabolic process|very long-chain fatty acid metabolic process	peroxisomal matrix	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity|flavin adenine dinucleotide binding|protein N-terminus binding			ovary(1)	1						CTCACCTAGCCGTCTGGAGCA	0.433													24	56					0	0	1	0	0	
EVPL	2125	broad.mit.edu	37	17	74005245	74005245	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:74005245C>T	uc002jqi.2	-	22	4269	c.4041G>A	c.(4039-4041)GCG>GCA	p.A1347A	EVPL_uc010wss.1_Silent_p.A1369A|EVPL_uc010wst.1_Silent_p.A817A	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1347	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCGCGTCCTCCGCGGCCCGCC	0.682													4	51					0	0	1	0	0	
EVPL	2125	broad.mit.edu	37	17	74011054	74011054	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:74011054C>T	uc002jqi.2	-	17	2393	c.2165G>A	c.(2164-2166)CGC>CAC	p.R722H	EVPL_uc010wss.1_Missense_Mutation_p.R744H|EVPL_uc010wst.1_Missense_Mutation_p.R192H	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	722	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCGCACCTGGCGCTGCTGGCG	0.667													7	42					0	0	1	0	0	
QRICH2	84074	broad.mit.edu	37	17	74278023	74278023	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:74278023C>T	uc002jrd.1	-	8	3867	c.3687G>A	c.(3685-3687)CGG>CGA	p.R1229R	QRICH2_uc010wsz.1_Silent_p.R1155R|QRICH2_uc010dgw.1_Silent_p.R73R	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1229							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCTCATAGCGCCGCACCAGCG	0.642													5	24					0	0	1	0	0	
SPHK1	8877	broad.mit.edu	37	17	74382513	74382513	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:74382513G>A	uc002jrf.1	+	7	1107	c.298G>A	c.(298-300)GCC>ACC	p.A100T	SPHK1_uc002jrg.1_Missense_Mutation_p.A49T|SPHK1_uc002jrh.2_Missense_Mutation_p.A114T|SPHK1_uc002jrj.2_Missense_Mutation_p.A186T|SPHK1_uc002jri.2_Missense_Mutation_p.A100T|SPHK1_uc002jrk.3_Missense_Mutation_p.A100T	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	100	DAGKc.				'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						CTGGGAGACCGCCATCCAGAA	0.657											OREG0024750	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	56					0	0	1	0	0	
ST6GALNAC2	10610	broad.mit.edu	37	17	74566696	74566696	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:74566696A>T	uc002jsg.3	-	6	979	c.724T>A	c.(724-726)TCG>ACG	p.S242T		NM_006456	NP_006447	Q9UJ37	SIA7B_HUMAN	sialyltransferase 7B	242	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity				0						AGAATGGCCGATCTCAGCATC	0.582													4	36					0	0	1	0	0	
SEPT9	10801	broad.mit.edu	37	17	75398265	75398265	+	Silent	SNP	C	T	T	rs61744333		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:75398265C>T	uc002jts.3	+	3	327	c.201C>T	c.(199-201)GGC>GGT	p.G67G	SEPT9_uc010wtk.1_Silent_p.G48G|SEPT9_uc002jtt.3_5'UTR|SEPT9_uc002jtu.3_Silent_p.G49G|SEPT9_uc002jtv.2_Silent_p.G60G|SEPT9_uc002jtw.2_5'UTR|SEPT9_uc002jtx.1_5'UTR|SEPT9_uc010wtl.1_5'Flank	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	67					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			AGGACCTGGGCGTGAAGAACT	0.667													19	49					0	0	1	0	0	
TNRC6C	57690	broad.mit.edu	37	17	76089061	76089061	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:76089061A>G	uc002jud.2	+	16	4618	c.4018A>G	c.(4018-4020)ATT>GTT	p.I1340V	TNRC6C_uc002juf.2_Missense_Mutation_p.I1337V	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1340					gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			TAAGTCCTCCATTGATGACTC	0.507													3	31					0	0	1	0	0	
DNAH17	8632	broad.mit.edu	37	17	76548815	76548815	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:76548815A>G	uc002jvv.1	-	11	1463	c.1357T>C	c.(1357-1359)TTG>CTG	p.L453L						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCAGCGCTCAATAACTTGACA	0.423													22	228					0	0	1	0	0	
ENGASE	64772	broad.mit.edu	37	17	77076406	77076406	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:77076406G>A	uc002jwv.2	+	5	691	c.683G>A	c.(682-684)CGT>CAT	p.R228H	ENGASE_uc002jwu.1_Missense_Mutation_p.R228H|ENGASE_uc010wtz.1_Missense_Mutation_p.R42H|ENGASE_uc002jww.2_5'UTR	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	228						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CAGTTTTTTCGTTTTGATGGC	0.607													14	42					0	0	1	0	0	
CBX4	8535	broad.mit.edu	37	17	77809003	77809003	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:77809003C>T	uc002jxe.2	-	5	601	c.438G>A	c.(436-438)AAG>AAA	p.K146K		NM_003655	NP_003646	O00257	CBX4_HUMAN	chromobox homolog 4	146	Interaction with BMI1.				anti-apoptosis|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|PcG protein complex	enzyme binding|transcription corepressor activity			skin(2)	2			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ACTTGCCGCTCTTGCCCGGCG	0.637											OREG0024799	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	93					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	17	78269393	78269393	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:78269393G>A	uc002jyf.2	+	10	1935	c.1792G>A	c.(1792-1794)GTG>ATG	p.V598M	uc002jyg.1_Missense_Mutation_p.V329M	NM_020954	NP_066005			hypothetical protein LOC57714																		GAAAAAACACGTGGTACCATT	0.488													10	29					0	0	1	0	0	
RPTOR	57521	broad.mit.edu	37	17	78599517	78599517	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:78599517T>C	uc002jyt.1	+	2	994	c.189T>C	c.(187-189)GTT>GTC	p.V63V	RPTOR_uc002jys.2_Silent_p.V63V|RPTOR_uc010wuf.1_5'UTR|RPTOR_uc010wug.1_Silent_p.V63V	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	63					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						TTGCCTTAGTTTTGTGCCTGA	0.438													11	113					0	0	1	0	0	
AATK	9625	broad.mit.edu	37	17	79094124	79094124	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:79094124C>T	uc010dia.2	-	11	3692	c.3612G>A	c.(3610-3612)GCG>GCA	p.A1204A	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	1204						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCAGGTTGCGCGCGCTCTGGC	0.662													4	22					0	0	1	0	0	
AZI1	22994	broad.mit.edu	37	17	79173252	79173252	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:79173252C>T	uc002jzp.1	-	10	1321	c.1121G>A	c.(1120-1122)CGG>CAG	p.R374Q	AZI1_uc002jzm.1_5'Flank|AZI1_uc002jzn.1_Missense_Mutation_p.R374Q|AZI1_uc002jzo.1_Missense_Mutation_p.R374Q|AZI1_uc010wum.1_Missense_Mutation_p.R374Q	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	374					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			AGCAGGCTGCCGCATTCCTGG	0.657													6	13					0	0	1	0	0	
C17orf70	80233	broad.mit.edu	37	17	79512907	79512907	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:79512907G>A	uc002kaq.2	-	6	2230	c.2175C>T	c.(2173-2175)GGC>GGT	p.G725G	C17orf70_uc002kao.1_Silent_p.G374G|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Silent_p.G574G	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	725					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			ACAGGGGCACGCCTGGAGGGG	0.642													4	11					0	0	1	0	0	
TSPAN10	83882	broad.mit.edu	37	17	79612028	79612028	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:79612028G>A	uc010die.2	+	2	137	c.47G>A	c.(46-48)GGC>GAC	p.G16D	TSPAN10_uc002kaw.1_Missense_Mutation_p.G16D|TSPAN10_uc010did.1_RNA	NM_031945	NP_114151	Q9H1Z9	TSN10_HUMAN	tetraspanin 10	16						integral to membrane				ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.175)|Lung NSC(278;0.192)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GAAACTGCAGGCCAGAAGCCC	0.642													3	41					0	0	1	0	0	
P4HB	5034	broad.mit.edu	37	17	79803437	79803437	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:79803437C>T	uc002kbn.1	-	9	1556	c.1359G>A	c.(1357-1359)ACG>ACA	p.T453T	P4HB_uc002kbl.1_Silent_p.T130T|P4HB_uc002kbm.1_Silent_p.T130T	NM_000918	NP_000909	P07237	PDIA1_HUMAN	prolyl 4-hydroxylase, beta subunit precursor	453	Thioredoxin 2.				cell redox homeostasis|glycerol ether metabolic process|lipid metabolic process|lipoprotein metabolic process|peptidyl-proline hydroxylation to 4-hydroxy-L-proline	cell surface|endoplasmic reticulum lumen|ER-Golgi intermediate compartment|extracellular region|melanosome|plasma membrane	electron carrier activity|procollagen-proline 4-dioxygenase activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0509)			GAAGGCGCACCGTCCTGTCGG	0.642													8	21					0	0	1	0	0	
RFNG	5986	broad.mit.edu	37	17	80006940	80006940	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:80006940G>A	uc002kdj.2	-	7	889	c.881C>T	c.(880-882)GCT>GTT	p.A294V	RFNG_uc002kdh.2_Missense_Mutation_p.A79V|GPS1_uc002kdk.1_5'Flank|GPS1_uc002kdl.1_5'Flank|GPS1_uc010dij.1_5'Flank|GPS1_uc002kdm.1_5'Flank|GPS1_uc002kdn.1_5'Flank|GPS1_uc002kdo.1_5'Flank|GPS1_uc010wvh.1_5'Flank	NM_002917	NP_002908	Q9Y644	RFNG_HUMAN	radical fringe	294	Lumenal (Potential).				cell differentiation|nervous system development|organ morphogenesis|pattern specification process	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			GAAGCCTCCAGCCACGTTCAC	0.607													9	38					0	0	1	0	0	
CCDC57	284001	broad.mit.edu	37	17	80059604	80059604	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:80059604C>T	uc002kdx.1	-	17	2739	c.2702G>A	c.(2701-2703)GGC>GAC	p.G901D		NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	902										ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			CCTCTGGCAGCCTTTAGCTTT	0.612													12	124					0	0	1	0	0	
CSNK1D	1453	broad.mit.edu	37	17	80213367	80213367	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:80213367G>T	uc002kej.2	-	3	590	c.274C>A	c.(274-276)CTC>ATC	p.L92I	SLC16A3_uc002kee.2_Intron|CSNK1D_uc002kef.2_Missense_Mutation_p.L92I|CSNK1D_uc002kei.2_Missense_Mutation_p.L92I|CSNK1D_uc010wvj.1_5'UTR|CSNK1D_uc002keh.2_5'Flank|CSNK1D_uc010dim.1_5'Flank	NM_001893	NP_001884	P48730	KC1D_HUMAN	casein kinase 1, delta isoform 1	92	Protein kinase.				circadian regulation of gene expression|DNA repair|G2/M transition of mitotic cell cycle|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|regulation of circadian rhythm|Wnt receptor signaling pathway	centrosome|cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			breast(2)	2	Breast(20;0.00136)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0155)			AAGTTGAAGAGGTCCTCCAGG	0.552													14	112					2.62699e-14	2.85912e-14	1	1	0	
CD7	924	broad.mit.edu	37	17	80274772	80274772	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:80274772C>T	uc002kel.1	-	2	277	c.168G>A	c.(166-168)GGG>GGA	p.G56G	CD7_uc010din.2_Silent_p.G56G|CD7_uc002kem.2_Missense_Mutation_p.D38N|CD7_uc010wvk.1_Silent_p.G56G	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	56	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			TCAGGTAGATCCCACGCAGGC	0.657													4	45					0	0	1	0	0	
TBCD	6904	broad.mit.edu	37	17	80861301	80861301	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:80861301C>T	uc002kfz.2	+	19	1881	c.1751C>T	c.(1750-1752)GCG>GTG	p.A584V	TBCD_uc002kfx.1_Missense_Mutation_p.A567V|TBCD_uc002kfy.1_Missense_Mutation_p.A584V|TBCD_uc002kgb.1_5'UTR	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	584	HEAT 2.				'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			GAGTTGGCTGCGAGGGCGCTG	0.557													3	9					0	0	1	0	0	
SMCHD1	23347	broad.mit.edu	37	18	2700817	2700817	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:2700817T>C	uc002klm.3	+	12	1737	c.1548T>C	c.(1546-1548)AAT>AAC	p.N516N	SMCHD1_uc002klk.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	516					chromosome organization		ATP binding				0						TATTCACTAATGACAAATTCC	0.368													7	58					0	0	1	0	0	
DLGAP1	9229	broad.mit.edu	37	18	3729198	3729198	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:3729198A>G	uc002kmf.2	-	4	1595	c.1528T>C	c.(1528-1530)TCC>CCC	p.S510P	DLGAP1_uc010wyz.1_Missense_Mutation_p.S510P|DLGAP1_uc002kme.1_Missense_Mutation_p.S208P|DLGAP1_uc010dkn.2_Missense_Mutation_p.S208P|DLGAP1_uc010wyw.1_Missense_Mutation_p.S216P|DLGAP1_uc010wyx.1_Missense_Mutation_p.S222P|DLGAP1_uc010wyy.1_Missense_Mutation_p.S222P|DLGAP1_uc002kmg.2_Missense_Mutation_p.S208P|DLGAP1_uc002kmk.2_Missense_Mutation_p.S510P	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	510					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GACCTCAGGGACACGCACTCG	0.687													13	27					0	0	1	0	0	
EPB41L3	23136	broad.mit.edu	37	18	5419828	5419828	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:5419828T>G	uc002kmt.1	-	12	1474	c.1388A>C	c.(1387-1389)AAC>ACC	p.N463T	EPB41L3_uc010wzh.1_Missense_Mutation_p.N481T|EPB41L3_uc002kmu.1_Missense_Mutation_p.N481T|EPB41L3_uc010dkq.1_Missense_Mutation_p.N372T|EPB41L3_uc002kms.1_5'UTR|EPB41L3_uc010wze.1_5'UTR|EPB41L3_uc010wzf.1_5'UTR|EPB41L3_uc010wzg.1_5'UTR|EPB41L3_uc010dkr.2_Missense_Mutation_p.N42T	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	463	Hydrophilic.				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GGTGATCAAGTTGGTCTGAGA	0.333													4	71					0	0	1	0	0	
LAMA1	284217	broad.mit.edu	37	18	6999505	6999505	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:6999505G>T	uc002knm.2	-	32	4696	c.4602C>A	c.(4600-4602)GCC>GCA	p.A1534A	LAMA1_uc010wzj.1_Silent_p.A1010A	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1534	Laminin EGF-like 17.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGCCCCGAGGCCCCCAGCC	0.547													17	29					1.56452e-12	1.70061e-12	1	1	0	
PTPRM	5797	broad.mit.edu	37	18	7567873	7567873	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:7567873G>A	uc002knn.3	+	1	560	c.57G>A	c.(55-57)GCG>GCA	p.A19A	PTPRM_uc010dkv.2_Silent_p.A19A	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	19					homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TAACTGCGGCGGGCGAGACGT	0.393													17	53					0	0	1	0	0	
KIAA0802	23255	broad.mit.edu	37	18	8720350	8720350	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:8720350A>G	uc002knr.2	+	4	355	c.213A>G	c.(211-213)GTA>GTG	p.V71V	KIAA0802_uc002knq.2_Silent_p.V71V	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	422											0						CCAAAGATGTATCTGTCAGAT	0.448													9	85					0	0	1	0	0	
APCDD1	147495	broad.mit.edu	37	18	10468632	10468632	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:10468632C>T	uc002kom.3	+	2	579	c.225C>T	c.(223-225)GGC>GGT	p.G75G		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	75	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		CAATCGAGGGCCACTGGGTCT	0.542													5	44					0	0	1	0	0	
MC2R	4158	broad.mit.edu	37	18	13884951	13884951	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:13884951G>A	uc002ksp.1	-	2	744	c.567C>T	c.(565-567)ATC>ATT	p.I189I		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	189	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	AGAGGCACAGGATGAAGACCA	0.567													8	80					0	0	1	0	0	
SS18	6760	broad.mit.edu	37	18	23637588	23637588	+	Missense_Mutation	SNP	G	A	A	rs149732063	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:23637588G>A	uc002kvm.2	-	4	428	c.350C>T	c.(349-351)CCG>CTG	p.P117L	SS18_uc002kvn.2_Missense_Mutation_p.P117L|SS18_uc010xbf.1_Missense_Mutation_p.P35L|SS18_uc010xbg.1_Missense_Mutation_p.P65L|SS18_uc010xbh.1_Missense_Mutation_p.P65L|SS18_uc010xbi.1_Missense_Mutation_p.P94L|SS18_uc010dlz.1_Missense_Mutation_p.P65L	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	117	Transcriptional activation.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					CTGCATGTGCGGTGCAGGAGG	0.547			T	SSX1| SSX2	synovial sarcoma								13	75					0	0	1	0	0	
DSC3	1825	broad.mit.edu	37	18	28581620	28581620	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:28581620A>G	uc002kwj.3	-	14	2354	c.2199T>C	c.(2197-2199)ATT>ATC	p.I733I	DSC3_uc002kwi.3_Silent_p.I733I	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	733	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TGTTTGATATAATTAAGTTTT	0.308													6	91					0	0	1	0	0	
DSG4	147409	broad.mit.edu	37	18	28965115	28965115	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:28965115A>G	uc002kwq.2	+	2	200	c.65A>G	c.(64-66)AAC>AGC	p.N22S	DSG4_uc002kwr.2_Missense_Mutation_p.N22S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	22					homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATGGAAGTAAACAGTGAATTT	0.204													10	82					0	0	1	0	0	
DSG4	147409	broad.mit.edu	37	18	28986046	28986046	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:28986046C>T	uc002kwq.2	+	12	1778	c.1643C>T	c.(1642-1644)TCG>TTG	p.S548L	DSG4_uc002kwr.2_Missense_Mutation_p.S548L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	548	Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TCAGCTACCTCGGCAATCCTT	0.418													3	70					0	0	1	0	0	
KIAA1012	22878	broad.mit.edu	37	18	29522637	29522637	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:29522637G>A	uc002kxc.3	-	1	455	c.91C>T	c.(91-93)CTC>TTC	p.L31F	KIAA1012_uc002kxb.3_Intron|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Missense_Mutation_p.L31F	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	31					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						AGACGAGTGAGCCGCTCGGCT	0.612													3	6					0	0	1	0	0	
ASXL3	80816	broad.mit.edu	37	18	31326458	31326458	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:31326458C>T	uc010dmg.1	+	12	6701	c.6646C>T	c.(6646-6648)CGG>TGG	p.R2216W	ASXL3_uc002kxq.2_Missense_Mutation_p.R1923W	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2216	PHD-type; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATGCTCTTGCCGGCTGAAAGC	0.507													6	29					0	0	1	0	0	
DTNA	1837	broad.mit.edu	37	18	32455306	32455306	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:32455306C>T	uc010dmn.1	+	17	1767	c.1766C>T	c.(1765-1767)ACG>ATG	p.T589M	DTNA_uc002kxw.2_Missense_Mutation_p.T532M|DTNA_uc010dmj.2_Missense_Mutation_p.T529M|DTNA_uc002kxz.2_Missense_Mutation_p.T536M|DTNA_uc002kxy.2_Missense_Mutation_p.T529M|DTNA_uc010xby.1_Missense_Mutation_p.T279M|DTNA_uc010xbz.1_Missense_Mutation_p.T298M|DTNA_uc010xca.1_Missense_Mutation_p.T241M|DTNA_uc002kye.2_Missense_Mutation_p.T237M	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	589					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						CCGACGCACACGCCGCAGGAC	0.582													26	66					0	0	1	0	0	
SLC39A6	25800	broad.mit.edu	37	18	33706548	33706548	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:33706548C>T	uc010dmy.2	-	2	713	c.423G>A	c.(421-423)AAG>AAA	p.K141K	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	141	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						GAGCTTTTCGCTTATTTTTAC	0.289													7	40					0	0	1	0	0	
ELP2	55250	broad.mit.edu	37	18	33726340	33726340	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:33726340A>G	uc002kzk.1	+	11	1131	c.1121A>G	c.(1120-1122)AAC>AGC	p.N374S	ELP2_uc010xcg.1_Missense_Mutation_p.N439S|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.N348S|ELP2_uc010xch.1_Intron|ELP2_uc002kzn.1_Intron|ELP2_uc002kzo.1_Missense_Mutation_p.N304S	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	374	WD 7.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						AATACAGTTAACCCAGTAAGA	0.348													12	54					0	0	1	0	0	
ACAA2	10449	broad.mit.edu	37	18	47311699	47311699	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:47311699T>C	uc002ldw.3	-	9	1374	c.977A>G	c.(976-978)CAG>CGG	p.Q326R	ACAA2_uc002ldx.3_Missense_Mutation_p.Q323R	NM_006111	NP_006102	P42765	THIM_HUMAN	acetyl-coenzyme A acyltransferase 2	326					anti-apoptosis|cholesterol biosynthetic process		acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1						AGCCAAGTACTGGGGAGCAAA	0.403													5	39					0	0	1	0	0	
CCDC68	80323	broad.mit.edu	37	18	52571597	52571597	+	Missense_Mutation	SNP	G	A	A	rs141183307		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:52571597G>A	uc002lfs.2	-	12	1172	c.1000C>T	c.(1000-1002)CGG>TGG	p.R334W	CCDC68_uc002lft.2_Missense_Mutation_p.R334W	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	334										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		GTTCATTTCCGTAACCTAATC	0.363													13	50					0	0	1	0	0	
ZNF532	55205	broad.mit.edu	37	18	56651464	56651464	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:56651464C>T	uc002lho.2	+	11	4219	c.3672C>T	c.(3670-3672)ATC>ATT	p.I1224I	ZNF532_uc002lhp.2_Silent_p.I1222I|ZNF532_uc010xeg.1_Silent_p.I1222I|ZNF532_uc002lhr.2_Silent_p.I1222I|ZNF532_uc002lhs.2_Silent_p.I1222I|ZNF532_uc010xeh.1_Silent_p.I312I	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1224	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						ACCTCTTCATCGTACACAAGT	0.532													6	51					0	0	1	0	0	
SERPINB4	6318	broad.mit.edu	37	18	61305030	61305030	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:61305030T>C	uc002ljf.2	-	8	1182	c.1096A>G	c.(1096-1098)AAT>GAT	p.N366D	SERPINB4_uc002lje.2_Missense_Mutation_p.N345D|SERPINB4_uc002ljg.2_Missense_Mutation_p.N366D	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	366					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AAAGGGTGATTACAACAGAAC	0.443													13	148					0	0	1	0	0	
SERPINB8	5271	broad.mit.edu	37	18	61649053	61649053	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:61649053G>A	uc002ljv.2	+	4	574	c.405G>A	c.(403-405)TGG>TGA	p.W135*	SERPINB8_uc002ljs.1_Nonsense_Mutation_p.W135*|SERPINB8_uc002ljt.2_Nonsense_Mutation_p.W135*|SERPINB8_uc002lju.2_Nonsense_Mutation_p.W135*|SERPINB8_uc010xex.1_5'UTR	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	135					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				TAAATGACTGGGTGGCAGAGA	0.443													11	145					0	0	1	0	0	
TMX3	54495	broad.mit.edu	37	18	66350180	66350180	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:66350180A>G	uc002lkf.2	-	13	1022	c.887T>C	c.(886-888)ATA>ACA	p.I296T	TMX3_uc010xez.1_Missense_Mutation_p.I155T	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	296	Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						CAAGGTATTTATGTAGTCATT	0.363													16	160					0	0	1	0	0	
RTTN	25914	broad.mit.edu	37	18	67684828	67684828	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:67684828A>G	uc002lkp.2	-	46	6304	c.6236T>C	c.(6235-6237)TTG>TCG	p.L2079S	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Missense_Mutation_p.L1167S|RTTN_uc002lkn.2_Missense_Mutation_p.L69S|RTTN_uc010dqp.2_Missense_Mutation_p.L331S	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	2079							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				GAGTAACTTCAACCAAAGAAT	0.378													5	97					0	0	1	0	0	
CBLN2	147381	broad.mit.edu	37	18	70205584	70205584	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:70205584G>T	uc002lku.2	-	4	737	c.502C>A	c.(502-504)CCA>ACA	p.P168T	CBLN2_uc002lkv.2_Missense_Mutation_p.P168T	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	168	C1q.					integral to membrane					0		Esophageal squamous(42;0.131)				GAGATCACTGGGTAGCCATTC	0.493													7	66					0.00307968	0.00313834	1	1	0	
FBXO15	201456	broad.mit.edu	37	18	71740785	71740785	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:71740785T>A	uc002lle.2	-	10	1552	c.1216A>T	c.(1216-1218)ATC>TTC	p.I406F	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.I482F	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	406										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		GTCTCTCTGATCCACACCAGC	0.483													16	193					0	0	1	0	0	
SALL3	27164	broad.mit.edu	37	18	76754750	76754750	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:76754750C>T	uc002lmt.2	+	2	2759	c.2759C>T	c.(2758-2760)CCG>CTG	p.P920L	SALL3_uc010dra.2_Missense_Mutation_p.P527L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	920					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TCCAAGTCCCCGGGCCTGGGC	0.602													8	15					0	0	1	0	0	
PRSSL1	400668	broad.mit.edu	37	19	691994	691994	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:691994C>T	uc002lpl.1	-	3	276	c.245G>A	c.(244-246)CGC>CAC	p.R82H	PRSSL1_uc010xfs.1_Missense_Mutation_p.R81H	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	82	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGCCAGTGCGGAGGTCTCT	0.637													3	7					0	0	1	0	0	
C19orf22	91300	broad.mit.edu	37	19	902066	902066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:902066G>A	uc002lqg.2	-	2	204	c.136C>T	c.(136-138)CGG>TGG	p.R46W	C19orf22_uc002lqh.2_Missense_Mutation_p.R25W|C19orf22_uc002lqi.2_Missense_Mutation_p.R46W|C19orf22_uc002lqj.2_5'UTR	NM_138774	NP_620129	Q96D70	CS022_HUMAN	hypothetical protein LOC91300	46						nucleus	nucleic acid binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCTGTTTCCGCCTGGAAGCC	0.657													18	89					0	0	1	0	0	
POLR2E	5434	broad.mit.edu	37	19	1095303	1095303	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:1095303C>G	uc002lre.3	-	1	89	c.12G>C	c.(10-12)GAG>GAC	p.E4D	POLR2E_uc010xgf.1_RNA	NM_002695	NP_002686	P19388	RPAB1_HUMAN	DNA directed RNA polymerase II polypeptide E	4					interspecies interaction between organisms|mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGTCTCCTCCTCGTCGTCCA	0.612													6	57					0	0	1	0	0	
ADAMTSL5	339366	broad.mit.edu	37	19	1507635	1507635	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:1507635G>A	uc002ltd.2	-	8	1053	c.609C>T	c.(607-609)TTC>TTT	p.F203F	ADAMTSL5_uc010dsl.2_5'UTR|ADAMTSL5_uc010xgq.1_Silent_p.F213F	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	203						proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTACCCAGCGAAGGCACCTG	0.517													4	56					0	0	1	0	0	
TLE6	79816	broad.mit.edu	37	19	2991927	2991927	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:2991927G>T	uc002lwu.2	+	13	1362	c.962G>T	c.(961-963)CGG>CTG	p.R321L	TLE6_uc002lwt.2_Missense_Mutation_p.R444L|TLE6_uc010dtg.2_Missense_Mutation_p.R444L|TLE6_uc002lwv.2_Missense_Mutation_p.R225L	NM_024760	NP_079036	Q9H808	TLE6_HUMAN	transducin-like enhancer of split 6 isoform 2	321	WD 4.				regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTGTCTGCGGTGCTGGGAC	0.582													17	48					3.41278e-10	3.66772e-10	1	1	0	
TLE2	7089	broad.mit.edu	37	19	3005947	3005947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:3005947C>T	uc002lww.2	-	16	1783	c.1520G>A	c.(1519-1521)CGT>CAT	p.R507H	TLE2_uc010xhb.1_Missense_Mutation_p.R174H|TLE2_uc010dth.2_Missense_Mutation_p.R508H|TLE2_uc010xhc.1_Missense_Mutation_p.R385H|TLE2_uc010dti.2_Missense_Mutation_p.R521H	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	507	WD 2.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTGCAGGAACGAATGTAGTT	0.632													15	40					0	0	1	0	0	
EEF2	1938	broad.mit.edu	37	19	3977944	3977944	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:3977944C>T	uc002lze.2	-	12	2023	c.1940G>A	c.(1939-1941)CGC>CAC	p.R647H		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	647						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGATCTTGCGGGCCTCAGC	0.632													16	33					0	0	1	0	0	
KDM4B	23030	broad.mit.edu	37	19	5032920	5032920	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:5032920G>A	uc002mbq.3	+	3	245	c.19G>A	c.(19-21)GGC>AGC	p.G7S	KDM4B_uc010xil.1_Missense_Mutation_p.G7S|KDM4B_uc010xim.1_Missense_Mutation_p.G7S	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	7					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						TGAGGACCACGGCGCCCAGAA	0.572													22	65					0	0	1	0	0	
KDM4B	23030	broad.mit.edu	37	19	5131974	5131974	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:5131974G>A	uc002mbq.3	+	13	2088	c.1862G>A	c.(1861-1863)CGG>CAG	p.R621Q	KDM4B_uc010xim.1_Missense_Mutation_p.R655Q|KDM4B_uc002mbr.3_Missense_Mutation_p.R379Q	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	621					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						CCGCCCACCCGGTCCCCACTG	0.632													3	9					0	0	1	0	0	
PTPRS	5802	broad.mit.edu	37	19	5214592	5214592	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:5214592G>A	uc002mbv.2	-	29	4708	c.4474C>T	c.(4474-4476)CGG>TGG	p.R1492W	PTPRS_uc002mbu.1_Missense_Mutation_p.R1061W|PTPRS_uc010xin.1_Missense_Mutation_p.R1034W|PTPRS_uc002mbw.2_Missense_Mutation_p.R1454W|PTPRS_uc002mbx.2_Missense_Mutation_p.R1049W|PTPRS_uc002mby.2_Missense_Mutation_p.R1045W	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1492	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		TCCTCCAGCCGCGTCATCATG	0.637													10	31					0	0	1	0	0	
RFX2	5990	broad.mit.edu	37	19	6042100	6042100	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:6042100A>G	uc002meb.2	-	4	484	c.215T>C	c.(214-216)GTG>GCG	p.V72A	RFX2_uc002mec.2_Missense_Mutation_p.V72A|RFX2_uc010xiy.1_Missense_Mutation_p.V27A	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						CACGTACTGCACCTGGGCAGG	0.607													18	81					0	0	1	0	0	
EMR1	2015	broad.mit.edu	37	19	6901939	6901939	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:6901939A>G	uc002mfw.2	+	6	606	c.568A>G	c.(568-570)AAC>GAC	p.N190D	EMR1_uc010dvc.2_Missense_Mutation_p.N190D|EMR1_uc010dvb.2_Missense_Mutation_p.N138D|EMR1_uc010xji.1_Intron|EMR1_uc010xjj.1_Intron	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	190	Extracellular (Potential).|EGF-like 4; calcium-binding (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AACTTGTAATAACACTGTTGG	0.463													6	248					0	0	1	0	0	
MCOLN1	57192	broad.mit.edu	37	19	7591468	7591468	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:7591468G>T	uc002mgo.2	+	3	506	c.381G>T	c.(379-381)CAG>CAT	p.Q127H	MCOLN1_uc002mgp.2_Missense_Mutation_p.R14M	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	127					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						AGCTGTACCAGGCCATCTTCC	0.388													33	87					3.93418e-24	4.32861e-24	1	1	0	
KIAA1543	57662	broad.mit.edu	37	19	7675435	7675435	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:7675435C>A	uc002mgv.3	+	6	935	c.834C>A	c.(832-834)GCC>GCA	p.A278A	KIAA1543_uc002mgu.3_Silent_p.A305A	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	278	CH.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						ATTTCTGTGCCTCTCGCCTTC	0.642													50	162					4.09106e-26	4.51282e-26	1	1	0	
ELAVL1	1994	broad.mit.edu	37	19	8038749	8038749	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:8038749C>T	uc002mjb.2	-	4	457	c.290G>A	c.(289-291)CGC>CAC	p.R97H		NM_001419	NP_001410	Q15717	ELAV1_HUMAN	ELAV-like 1	97	RRM 1.				3'-UTR-mediated mRNA stabilization|multicellular organismal development	cytoplasm|nucleoplasm	identical protein binding|mRNA binding|nucleotide binding				0						TGAGCTCGGGCGAGCATACGA	0.542													4	52					0	0	1	0	0	
MYO1F	4542	broad.mit.edu	37	19	8595150	8595150	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:8595150C>T	uc002mkg.2	-	21	2372	c.2258G>A	c.(2257-2259)CGT>CAT	p.R753H		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	753						unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CAGGAACTGACGCAGCTCGGG	0.617													24	236					0	0	1	0	0	
ACTL9	284382	broad.mit.edu	37	19	8807821	8807821	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:8807821C>T	uc002mkl.2	-	1	1352	c.1231G>A	c.(1231-1233)GTG>ATG	p.V411M		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	411						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						TTGCGGTACACGATATAGGGA	0.632													18	77					0	0	1	0	0	
OR7D2	162998	broad.mit.edu	37	19	9296577	9296577	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:9296577G>A	uc002mkz.1	+	1	308	c.120G>A	c.(118-120)CTG>CTA	p.L40L		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	40	Helical; Name=1; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGACGGTGCTGGGAAACCTGC	0.512													25	88					0	0	1	0	0	
ZNF699	374879	broad.mit.edu	37	19	9406947	9406947	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:9406947A>G	uc002mlc.1	-	5	1133	c.1133T>C	c.(1132-1134)CTC>CCC	p.L378P		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	378	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGTACAGTGAGTTTTGAGGA	0.423													7	71					0	0	1	0	0	
ZNF426	79088	broad.mit.edu	37	19	9639131	9639131	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:9639131T>G	uc002mlq.2	-	8	1854	c.1590A>C	c.(1588-1590)AAA>AAC	p.K530N	ZNF426_uc010dws.2_Missense_Mutation_p.K492N	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATTTATAGGGTTTCTCTTCTG	0.418													7	51					0	0	1	0	0	
OLFM2	93145	broad.mit.edu	37	19	9968005	9968005	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:9968005A>G	uc002mmp.2	-	4	542	c.514T>C	c.(514-516)TAT>CAT	p.Y172H	OLFM2_uc002mmo.2_Missense_Mutation_p.Y94H	NM_058164	NP_477512	O95897	NOE2_HUMAN	olfactomedin 2 precursor	172	Potential.					extracellular region				large_intestine(1)|skin(1)	2						AGGTCCTCATACCCGTAGGCA	0.637													3	63					0	0	1	0	0	
ANGPTL6	83854	broad.mit.edu	37	19	10203376	10203376	+	Silent	SNP	G	A	A	rs138536720		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:10203376G>A	uc002mmx.1	-	6	1420	c.1302C>T	c.(1300-1302)CAC>CAT	p.H434H	C19orf66_uc002mmu.3_3'UTR|C19orf66_uc002mmv.3_3'UTR|C19orf66_uc002mmw.3_3'UTR|ANGPTL6_uc002mmy.1_Silent_p.H434H	NM_031917	NP_114123	Q8NI99	ANGL6_HUMAN	angiopoietin-like 6 precursor	434	Fibrinogen C-terminal.				angiogenesis|cell differentiation|signal transduction	extracellular space	receptor binding				0			OV - Ovarian serous cystadenocarcinoma(20;3.58e-08)|Epithelial(33;2.5e-05)|all cancers(31;5.96e-05)			AGTGGCCGCCGTGGTGCCACA	0.622													15	44					0	0	1	0	0	
KEAP1	9817	broad.mit.edu	37	19	10610476	10610476	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:10610476G>A	uc002moq.1	-	2	390	c.234C>T	c.(232-234)GAC>GAT	p.D78D	KEAP1_uc002mor.1_Silent_p.D78D	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	78	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			GCAGTGTGACGTCACACAGCT	0.597													9	36					0	0	1	0	0	
TSPAN16	26526	broad.mit.edu	37	19	11408917	11408917	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:11408917G>A	uc002mqv.1	+	2	319	c.169G>A	c.(169-171)GTT>ATT	p.V57I	TSPAN16_uc002mqu.1_RNA	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	57	Helical; (Potential).					integral to membrane				skin(1)	1						CCTCCTTCACGTTGGCAACCT	0.572													27	78					0	0	1	0	0	
LPPR2	64748	broad.mit.edu	37	19	11471930	11471930	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:11471930C>T	uc002mre.1	+	6	766	c.429C>T	c.(427-429)TTC>TTT	p.F143F	LPPR2_uc002mrf.1_Silent_p.F118F|LPPR2_uc010dxy.1_5'UTR	NM_022737	NP_073574	Q96GM1	LPPR2_HUMAN	lipid phosphate phosphatase-related protein type	143	Helical; (Potential).					integral to membrane	phosphatidate phosphatase activity			large_intestine(1)	1						CGACCATCTTCGCCAACGCGG	0.642													19	42					0	0	1	0	0	
ACP5	54	broad.mit.edu	37	19	11687099	11687099	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:11687099C>T	uc002msg.3	-	4	840	c.694G>A	c.(694-696)GGG>AGG	p.G232R	ACP5_uc002msh.3_Missense_Mutation_p.G232R|ACP5_uc002msi.3_Missense_Mutation_p.G232R|ACP5_uc002msj.3_Missense_Mutation_p.G232R	NM_001611	NP_001602	P13686	PPA5_HUMAN	acid phosphatase 5, tartrate resistant	232					water-soluble vitamin metabolic process	cytosol|integral to membrane|lysosome	acid phosphatase activity|ferric iron binding|ferrous iron binding			central_nervous_system(1)	1						GCAGTGACCCCGTATGTGGCC	0.662													4	30					0	0	1	0	0	
ZNF700	90592	broad.mit.edu	37	19	12058330	12058330	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:12058330A>G	uc002msu.2	+	3	318	c.192A>G	c.(190-192)GGA>GGG	p.G64G	ZNF700_uc010xme.1_Silent_p.G82G|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	64	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTATTTTAGGAAAAAAATGGA	0.368													6	66					0	0	1	0	0	
MAN2B1	4125	broad.mit.edu	37	19	12769060	12769060	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:12769060C>T	uc002mub.2	-	9	1284	c.1208G>A	c.(1207-1209)CGC>CAC	p.R403H	MAN2B1_uc010dyv.1_Missense_Mutation_p.R402H	NM_000528	NP_000519	O00754	MA2B1_HUMAN	mannosidase, alpha, class 2B, member 1	403					protein deglycosylation	lysosome	alpha-mannosidase activity|zinc ion binding			ovary(4)|central_nervous_system(2)	6						GTAGCTGAGGCGCTCGTAGCG	0.632													21	41					0	0	1	0	0	
ZSWIM4	65249	broad.mit.edu	37	19	13919924	13919924	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:13919924G>A	uc002mxh.1	+	5	1091	c.902G>A	c.(901-903)CGC>CAC	p.R301H	ZSWIM4_uc010xng.1_Missense_Mutation_p.R107H	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	301							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AACGGGGCGCGCATGCTGATT	0.687													13	96					0	0	1	0	0	
NANOS3	342977	broad.mit.edu	37	19	13988138	13988138	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:13988138C>T	uc002mxj.3	+	1	189	c.76C>T	c.(76-78)CCT>TCT	p.P26S		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	26					anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GAAAGAGGGTCCTGAAACCAG	0.642													6	159					0	0	1	0	0	
LPHN1	22859	broad.mit.edu	37	19	14269224	14269224	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:14269224C>T	uc010xnn.1	-	13	2601	c.2305G>A	c.(2305-2307)GCA>ACA	p.A769T	LPHN1_uc010xno.1_Missense_Mutation_p.A764T|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	769	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						ATGGATGCTGCGATGACCTGT	0.642													6	70					0	0	1	0	0	
CCDC105	126402	broad.mit.edu	37	19	15132166	15132166	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:15132166G>A	uc002nae.2	+	4	975	c.876G>A	c.(874-876)GCG>GCA	p.A292A		NM_173482	NP_775753	Q8IYK2	CC105_HUMAN	coiled-coil domain containing 105	292					microtubule cytoskeleton organization	microtubule				ovary(1)	1						CATTTGCAGCGTGCGCCTTGG	0.617													6	17					0	0	1	0	0	
CYP4F2	8529	broad.mit.edu	37	19	16000370	16000370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:16000370G>A	uc002nbs.1	-	7	831	c.781C>T	c.(781-783)CGC>TGC	p.R261C	CYP4F2_uc010xot.1_Missense_Mutation_p.R112C|CYP4F2_uc010xou.1_Missense_Mutation_p.R112C	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	261					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGCACCAGGCGGCAGGCCCTG	0.562													19	120					0	0	1	0	0	
CYP4F11	57834	broad.mit.edu	37	19	16040401	16040401	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:16040401G>A	uc002nbu.2	-	3	245	c.209C>T	c.(208-210)ACG>ATG	p.T70M	CYP4F11_uc010eab.1_Missense_Mutation_p.T70M|CYP4F11_uc002nbt.2_Missense_Mutation_p.T70M	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	70					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCCCTCTTCCGTGGGAGTGAC	0.388													14	109					0	0	1	0	0	
MED26	9441	broad.mit.edu	37	19	16688383	16688383	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:16688383C>T	uc002nen.1	-	3	519	c.258G>A	c.(256-258)CCG>CCA	p.P86P	MED26_uc002nee.2_RNA	NM_004831	NP_004822	O95402	MED26_HUMAN	mediator complex subunit 26	86	TFIIS N-terminal.				regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|RNA polymerase II transcription cofactor activity|transcription coactivator activity			ovary(2)	2						GCTGGTGTGCCGGCTCGATGA	0.692													8	27					0	0	1	0	0	
TMEM38A	79041	broad.mit.edu	37	19	16791318	16791318	+	Missense_Mutation	SNP	C	T	T	rs139650677		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:16791318C>T	uc002nes.2	+	3	483	c.392C>T	c.(391-393)GCG>GTG	p.A131V		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	131	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						CGCAAGATCGCGGTGGGCATC	0.527													15	125					0	0	1	0	0	
HAUS8	93323	broad.mit.edu	37	19	17179875	17179875	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:17179875C>T	uc002nfe.2	-	3	224	c.113G>A	c.(112-114)CGG>CAG	p.R38Q	HAUS8_uc002nff.2_Missense_Mutation_p.R38Q|HAUS8_uc002nfg.1_5'UTR|HAUS8_uc002nfh.1_Missense_Mutation_p.R38Q	NM_033417	NP_219485	Q9BT25	HAUS8_HUMAN	sarcoma antigen NY-SAR-48 isoform a	38				R -> P (in Ref. 5; AAH04398).	cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle pole					0						CTGCAGATACCGGGACTCAAT	0.532													4	26					0	0	1	0	0	
ANKLE1	126549	broad.mit.edu	37	19	17396335	17396335	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:17396335C>T	uc002nga.2	+	7	1748	c.1472C>T	c.(1471-1473)ACG>ATG	p.T491M	ANKLE1_uc010xpm.1_RNA|ANKLE1_uc010eao.1_Missense_Mutation_p.T487M|ANKLE1_uc010xpn.1_Missense_Mutation_p.T519M|ANKLE1_uc002nfy.2_Missense_Mutation_p.T454M|ANKLE1_uc002nfz.2_Missense_Mutation_p.T197M	NM_152363	NP_689576	Q8NAG6	ANKL1_HUMAN	ankyrin repeat domain 41	491						nuclear envelope					0						GGCAAAGGGACGAGGGCCCGG	0.612													6	132					0	0	1	0	0	
MAP1S	55201	broad.mit.edu	37	19	17831825	17831825	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:17831825A>G	uc002nhe.1	+	2	208	c.199A>G	c.(199-201)ACC>GCC	p.T67A	MAP1S_uc010eaz.1_RNA|MAP1S_uc010eba.1_Missense_Mutation_p.T67A|MAP1S_uc002nhf.1_Intron|MAP1S_uc010xpv.1_Missense_Mutation_p.T41A	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	67	Necessary for the microtubule-organizing center localization.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						ACACTCTGCCACCTTCTCCAG	0.582													5	119					0	0	1	0	0	
B3GNT3	10331	broad.mit.edu	37	19	17922546	17922546	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:17922546T>C	uc002nhk.1	+	3	819	c.734T>C	c.(733-735)ATC>ACC	p.I245T	B3GNT3_uc002nhl.1_Missense_Mutation_p.I245T|B3GNT3_uc010ebd.1_Missense_Mutation_p.I245T|B3GNT3_uc010ebe.1_Missense_Mutation_p.I245T	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	245	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						GTGGGCCCCATCCGGGCTTTT	0.572													5	71					0	0	1	0	0	
UPF1	5976	broad.mit.edu	37	19	18967788	18967788	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:18967788G>A	uc002nkg.2	+	14	2235	c.1960G>A	c.(1960-1962)GAG>AAG	p.E654K	UPF1_uc002nkf.2_Missense_Mutation_p.E643K|UPF1_uc002nkh.2_5'Flank	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	654					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CCAGGCCACCGAGCCGGAGTG	0.607													11	110					0	0	1	0	0	
DDX49	54555	broad.mit.edu	37	19	19035782	19035782	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:19035782C>A	uc002nkq.1	+	9	1078	c.1021C>A	c.(1021-1023)CGT>AGT	p.R341S	HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_Missense_Mutation_p.R234S|DDX49_uc002nkt.1_3'UTR	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	341	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			CCGGACGGCCCGTGCAGGTGA	0.657													11	27					5.50884e-06	5.78597e-06	1	1	0	
NCAN	1463	broad.mit.edu	37	19	19360629	19360629	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:19360629A>G	uc002nlz.2	+	15	3974	c.3875A>G	c.(3874-3876)CAG>CGG	p.Q1292R	NCAN_uc002nma.2_Missense_Mutation_p.S48G	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1292					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			caccaccaccagcatcaccac	0.433													9	43					0	0	1	0	0	
LOC284441	284441	broad.mit.edu	37	19	20369969	20369969	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:20369969G>A	uc002nov.2	+	1	1513	c.762G>A	c.(760-762)ATG>ATA	p.M254I		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						GGTCTACTATGTATCCTGGCC	0.388													4	95					0	0	1	0	0	
ZNF43	7594	broad.mit.edu	37	19	22000730	22000730	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:22000730C>A	uc002nqj.2	-	3	319	c.189G>T	c.(187-189)TGG>TGT	p.W63C	ZNF43_uc010ecv.2_Missense_Mutation_p.W57C|ZNF43_uc002nql.2_Missense_Mutation_p.W57C|ZNF43_uc002nqm.2_Missense_Mutation_p.W57C|ZNF43_uc002nqk.2_5'UTR	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	63	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		TCATAGGCTCCCAAGGCTCTT	0.423													7	124					0.000274275	0.000283037	1	1	0	
ZNF208	7757	broad.mit.edu	37	19	22193695	22193695	+	Translation_Start_Site	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:22193695C>T	uc002nqp.2	-	1	51	c.-98G>A	c.(-100--96)GTGTG>GTATG		ZNF208_uc002nqo.1_Translation_Start_Site|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GCAGAGGACACACAGCAGTAA	0.592													6	16					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	19	22785471	22785471	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:22785471C>T	uc002nqu.3	+	8		c.1560C>T								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		GCTGGAACATCGCTGCATCCA	0.607													17	82					0	0	1	0	0	
ZNF492	57615	broad.mit.edu	37	19	22836737	22836737	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:22836737A>C	uc002nqw.3	+	3	294	c.50A>C	c.(49-51)AAG>ACG	p.K17T		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	17	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				GCTGCCTCTAAGCCAGACCTG	0.403													11	73					0	0	1	0	0	
LOC100101266	100101266	broad.mit.edu	37	19	24346148	24346148	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:24346148G>A	uc010edb.1	-	1		c.102C>T				NR_003603				Homo sapiens hepatitis A virus cellular receptor 1 pseudogene (LOC100101266), non-coding RNA.												0						CGTGATAGACGGACCTGCCAT	0.483													9	27					0	0	1	0	0	
SLC7A9	11136	broad.mit.edu	37	19	33353425	33353425	+	Silent	SNP	C	T	T	rs75036167		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:33353425C>T	uc002ntv.3	-	5	663	c.546G>A	c.(544-546)GCG>GCA	p.A182A	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Silent_p.A182A|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	182	Helical; (Potential).		A -> T (in CSNU; type III; frequent mutation; mild loss of amino acid transport activity).		blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	CCAGCTTGGCCGCGGTGAAGA	0.597													16	38					0	0	1	0	0	
CHST8	64377	broad.mit.edu	37	19	34263385	34263385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:34263385G>A	uc002nus.3	+	5	1197	c.692G>A	c.(691-693)AGC>AAC	p.S231N	CHST8_uc002nut.3_Missense_Mutation_p.S231N|CHST8_uc002nuu.2_Missense_Mutation_p.S231N	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	231	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CACTATGGCAGCGCTCTCAAG	0.632													10	44					0	0	1	0	0	
HPN	3249	broad.mit.edu	37	19	35550829	35550829	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:35550829G>A	uc002nxq.1	+	7	587	c.342G>A	c.(340-342)ACG>ACA	p.T114T	HPN_uc002nxr.1_Silent_p.T114T|HPN_uc002nxs.1_Intron|HPN_uc010xsh.1_Silent_p.T83T|HPN_uc002nxt.1_5'UTR|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	114	SRCR.|Extracellular (Potential).				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CCAATGGCACGTCGGGCTTCT	0.706													4	5					0	0	1	0	0	
USF2	7392	broad.mit.edu	37	19	35769944	35769944	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:35769944G>A	uc002nyq.1	+	9	1027	c.918G>A	c.(916-918)CGG>CGA	p.R306R	USF2_uc010xss.1_Silent_p.R306R|USF2_uc002nyr.1_Silent_p.R239R|USF2_uc002nys.1_Silent_p.R108R|USF2_uc002nyt.1_Silent_p.R175R|USF2_uc002nyu.1_Silent_p.R108R|USF2_uc002nyv.1_Silent_p.R100R	NM_003367	NP_003358	Q15853	USF2_HUMAN	upstream stimulatory factor 2 isoform 1	306					lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter by glucose	nucleus	bHLH transcription factor binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity				0	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			AGGCCGAGCGGCTGCAGATGG	0.652													15	21					0	0	1	0	0	
MAG	4099	broad.mit.edu	37	19	35800865	35800865	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:35800865G>A	uc002nyy.1	+	8	1469	c.1320G>A	c.(1318-1320)CCG>CCA	p.P440P	MAG_uc002nyx.1_Silent_p.P440P|MAG_uc010eds.1_Silent_p.P415P|MAG_uc002nyz.1_Silent_p.P440P	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	440	Ig-like C2-type 4.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			ACCCGGAGCCGTCCGTGGCCT	0.667													7	105					0	0	1	0	0	
U2AF1L4	199746	broad.mit.edu	37	19	36235042	36235042	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:36235042C>A	uc002obg.2	-	5	368	c.59G>T	c.(58-60)CGG>CTG	p.R20L	TMEM149_uc002obb.2_5'Flank|TMEM149_uc002obc.2_5'Flank|TMEM149_uc002obd.3_5'Flank|TMEM149_uc010xsy.1_5'Flank|TMEM149_uc010eej.2_5'UTR|U2AF1L4_uc002obh.1_5'UTR|U2AF1L4_uc002obe.2_Missense_Mutation_p.R79L|U2AF1L4_uc002obf.2_Missense_Mutation_p.R79L|PSENEN_uc002obi.1_5'Flank|PSENEN_uc002obj.1_5'Flank|PSENEN_uc002obk.1_5'Flank			Q8WU68	U2AF4_HUMAN	Homo sapiens cDNA FLJ35525 fis, clone SPLEN2001650.	118	RRM.				mRNA processing|RNA splicing	nuclear speck|spliceosomal complex	nucleotide binding|RNA binding|zinc ion binding				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTCCTCCCTCCGGAACTGCAG	0.577													9	27					0.000978159	0.00100216	1	1	0	
ARHGAP33	115703	broad.mit.edu	37	19	36278199	36278199	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:36278199T>C	uc002obs.1	+	21	2334	c.2249T>C	c.(2248-2250)GTG>GCG	p.V750A	ARHGAP33_uc002obt.1_Missense_Mutation_p.V775A|ARHGAP33_uc010eel.2_Missense_Mutation_p.V499A|ARHGAP33_uc002obv.1_Missense_Mutation_p.V499A	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	803					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCTCAGCAGGTGGCCGAGCAA	0.716													18	40					0	0	1	0	0	
WDR62	284403	broad.mit.edu	37	19	36593955	36593955	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:36593955C>T	uc002odc.2	+	28	3517	c.3426C>T	c.(3424-3426)TAC>TAT	p.Y1142Y	WDR62_uc002odd.2_Silent_p.Y1147Y	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1142	WD 14.				cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GTACTGGCTACGCCTCCCCAG	0.647													4	33					0	0	1	0	0	
ZNF146	7705	broad.mit.edu	37	19	36727780	36727780	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:36727780T>C	uc002odq.3	+	4	1961	c.438T>C	c.(436-438)CAT>CAC	p.H146H	ZNF146_uc010eet.2_Silent_p.H146H|ZNF146_uc010eeu.2_Silent_p.H146H	NM_007145	NP_009076	Q15072	OZF_HUMAN	zinc finger protein 146	146	C2H2-type 5.				regulation of transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|heparin binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TTACTGAGCATGAGAAAATCC	0.423													7	85					0	0	1	0	0	
ZNF345	25850	broad.mit.edu	37	19	37367968	37367968	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:37367968G>A	uc002oex.2	+	3	614	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	ZNF345_uc002oey.3_Missense_Mutation_p.R79Q|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	79	C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTCCTTGTTCGACATCAGCGA	0.403													16	38					0	0	1	0	0	
ZNF569	148266	broad.mit.edu	37	19	37903706	37903706	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:37903706G>T	uc002ogi.2	-	6	2412	c.1854C>A	c.(1852-1854)AGC>AGA	p.S618R	ZNF569_uc002ogh.2_Missense_Mutation_p.S459R|ZNF569_uc002ogj.2_Missense_Mutation_p.S642R	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	618	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TAAGGGATGAGCTTTGGGAGA	0.413													22	74					1.37657e-19	1.50972e-19	1	1	0	
PAPL	390928	broad.mit.edu	37	19	39589701	39589701	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:39589701C>A	uc002oki.2	+	4	698	c.424C>A	c.(424-426)CTG>ATG	p.L142M	PAPL_uc010egl.2_Missense_Mutation_p.L142M	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	142						extracellular region	acid phosphatase activity|metal ion binding				0						GTTTGGAGACCTGGGGGCTGA	0.632													4	72					0.184627	0.185277	1	1	0	
ZNF780B	163131	broad.mit.edu	37	19	40541822	40541822	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:40541822C>T	uc002omu.2	-	5	1009	c.944G>A	c.(943-945)CGA>CAA	p.R315Q	ZNF780B_uc002omv.2_Missense_Mutation_p.R167Q	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	315	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTAATGATATCGAAAGGCCAT	0.383													9	116					0	0	1	0	0	
ADCK4	79934	broad.mit.edu	37	19	41209479	41209479	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:41209479C>T	uc002oor.2	-	9	1068	c.766G>A	c.(766-768)GCG>ACG	p.A256T	ADCK4_uc002oop.1_5'Flank|ADCK4_uc002ooq.1_Missense_Mutation_p.A215T	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	256	Protein kinase.					integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			TTGAGTACCGCCAGCAGGTTC	0.617													6	44					0	0	1	0	0	
CYP2F1	1572	broad.mit.edu	37	19	41630643	41630643	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:41630643C>T	uc002opu.1	+	8	1040	c.984C>T	c.(982-984)ATC>ATT	p.I328I	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Missense_Mutation_p.S309L|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	328					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						AGGAGGAGATCGACCTCGTGG	0.672													5	23					0	0	1	0	0	
CYP2S1	29785	broad.mit.edu	37	19	41700534	41700534	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:41700534G>A	uc002opw.2	+	2	318	c.263G>A	c.(262-264)CGG>CAG	p.R88Q	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_5'UTR	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	88					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						GAGGCTGTGCGGGAGGCCCTG	0.632													11	48					0	0	1	0	0	
CD79A	973	broad.mit.edu	37	19	42383351	42383351	+	Missense_Mutation	SNP	G	A	A	rs144367487	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:42383351G>A	uc002orv.2	+	2	556	c.371G>A	c.(370-372)CGC>CAC	p.R124H	CD79A_uc002oru.2_Intron	NM_001783	NP_001774	P11912	CD79A_HUMAN	CD79A antigen isoform 1 precursor	124	Extracellular (Potential).				B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			ovary(2)|pancreas(1)	3						ACCTACCTCCGCGTGCGCCGT	0.597			O|S		DLBCL								5	21					0	0	1	0	0	
ATP1A3	478	broad.mit.edu	37	19	42489240	42489240	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:42489240C>T	uc002osg.2	-	8	977	c.823G>A	c.(823-825)GCC>ACC	p.A275T	ATP1A3_uc010xwf.1_Missense_Mutation_p.A286T|ATP1A3_uc010xwg.1_Missense_Mutation_p.A245T|ATP1A3_uc010xwh.1_Missense_Mutation_p.A288T|ATP1A3_uc002osh.2_Missense_Mutation_p.A275T	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	275	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						ATCTCGATGGCGATGGGCGTC	0.632													3	27					0	0	1	0	0	
MEGF8	1954	broad.mit.edu	37	19	42880243	42880243	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:42880243C>T	uc002otl.3	+	41	8288	c.7653C>T	c.(7651-7653)GGC>GGT	p.G2551G	MEGF8_uc002otm.3_Silent_p.G2159G|MEGF8_uc002otn.3_Silent_p.G212G	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2618	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TGCTGCTGGGCGTGGGAGACC	0.647													16	38					0	0	1	0	0	
PSG1	5669	broad.mit.edu	37	19	43376071	43376071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:43376071C>T	uc002ovb.2	-	3	695	c.557G>A	c.(556-558)AGC>AAC	p.S186N	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.S186N|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.S186N|PSG1_uc010eio.1_Missense_Mutation_p.S186N|PSG1_uc002oux.1_Missense_Mutation_p.S115N|PSG1_uc002ouy.1_Missense_Mutation_p.S186N|PSG1_uc002ouz.1_Missense_Mutation_p.S186N|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.S186N	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	186	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CATAGGGAGGCTCTGACCATT	0.498													83	241					0	0	1	0	0	
CD177	57126	broad.mit.edu	37	19	43859890	43859890	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:43859890A>G	uc002owi.2	+	4	499	c.457A>G	c.(457-459)AAG>GAG	p.K153E	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	153	UPAR/Ly6 1.				blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GATCTGCCCCAAGGGGACCAC	0.577													12	34					0	0	1	0	0	
XRCC1	7515	broad.mit.edu	37	19	44057061	44057061	+	Splice_Site	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:44057061C>A	uc002owt.2	-	8	832	c.712_splice	c.e8-1	p.P238_splice	XRCC1_uc010xwp.1_Splice_Site_p.P207_splice	NM_006297	NP_006288	P18887	XRCC1_HUMAN	X-ray repair cross complementing protein 1						base-excision repair|single strand break repair	nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(2)|large_intestine(1)|prostate(1)|breast(1)	7		Prostate(69;0.0153)				ACTCCTGGGGCTGAGGGGATG	0.562								Other_BER_factors					3	14					0.115264	0.116009	1	1	0	
ZNF155	7711	broad.mit.edu	37	19	44500799	44500799	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:44500799G>T	uc002oxy.1	+	5	995	c.790G>T	c.(790-792)GCA>TCA	p.A264S	ZNF155_uc002oxz.1_Missense_Mutation_p.A264S|ZNF155_uc010xwt.1_Missense_Mutation_p.A275S	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	264	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				CATTTGTGAGGCATGTGGGAA	0.403													20	148					1.2644e-06	1.33539e-06	1	1	0	
CEACAM19	56971	broad.mit.edu	37	19	45179597	45179597	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:45179597C>T	uc002ozo.3	+	3	959	c.479C>T	c.(478-480)GCG>GTG	p.A160V	CEACAM19_uc002ozp.3_Missense_Mutation_p.A160V	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	160	Helical; (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				GGGATCCTGGCGGCCACCATC	0.577													23	60					0	0	1	0	0	
GIPR	2696	broad.mit.edu	37	19	46176148	46176148	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:46176148G>A	uc002pcu.1	+	5	419	c.320G>A	c.(319-321)GGC>GAC	p.G107D	GIPR_uc002pct.1_Missense_Mutation_p.G107D|GIPR_uc010xxp.1_Missense_Mutation_p.G71D|GIPR_uc010xxq.1_RNA|MIR642_hsa-mir-642|MI0003657_5'Flank	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	107	Extracellular (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		GGCAGTGATGGCCAATGGGGA	0.498													9	56					0	0	1	0	0	
DMPK	1760	broad.mit.edu	37	19	46280967	46280967	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:46280967C>T	uc002pdd.1	-	6	1414	c.870G>A	c.(868-870)GCG>GCA	p.A290A	DMPK_uc010xxs.1_Silent_p.A191A|DMPK_uc002pde.1_Silent_p.A290A|DMPK_uc002pdf.1_Silent_p.A280A|DMPK_uc002pdg.1_Silent_p.A280A|DMPK_uc002pdh.1_Silent_p.A280A|DMPK_uc002pdi.1_Silent_p.A306A|DMPK_uc010xxt.1_Silent_p.A280A	NM_001081563	NP_001075032	Q09013	DMPK_HUMAN	myotonic dystrophy protein kinase isoform 1	290	Protein kinase.				regulation of heart contraction		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)	3		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00616)|GBM - Glioblastoma multiforme(486;0.0825)|Epithelial(262;0.24)		CCGTGGAATCCGCGTAGAAGG	0.642													15	142					0	0	1	0	0	
CCDC8	83987	broad.mit.edu	37	19	46915642	46915642	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:46915642G>A	uc002pep.2	-	1	1278	c.426C>T	c.(424-426)AGC>AGT	p.S142S		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	142						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		TCTCCAGGTCGCTTCCCAGGA	0.667													12	61					0	0	1	0	0	
GRLF1	2909	broad.mit.edu	37	19	47422062	47422062	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:47422062C>T	uc010ekv.2	+	1	130	c.130C>T	c.(130-132)CGC>TGC	p.R44C		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	44					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		CCGCTTCGTGCGCCCGAGTGC	0.527													7	83					0	0	1	0	0	
BCAT2	587	broad.mit.edu	37	19	49303347	49303347	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:49303347T>G	uc002pkr.2	-	5	459	c.422A>C	c.(421-423)AAG>ACG	p.K141T	BCAT2_uc002pkp.2_Missense_Mutation_p.K101T|BCAT2_uc002pkq.3_Missense_Mutation_p.K101T|BCAT2_uc002pks.2_Missense_Mutation_p.K101T|BCAT2_uc002pkt.2_Missense_Mutation_p.K49T|BCAT2_uc010emh.1_Missense_Mutation_p.K141T|BCAT2_uc010emi.1_Missense_Mutation_p.K49T|BCAT2_uc002pku.1_Missense_Mutation_p.K101T|BCAT2_uc010emj.1_RNA	NM_001190	NP_001181	O15382	BCAT2_HUMAN	branched chain aminotransferase 2, mitochondrial	141						mitochondrial matrix	L-isoleucine transaminase activity|L-leucine transaminase activity|L-valine transaminase activity			ovary(1)	1		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.000366)|Epithelial(262;0.0195)|GBM - Glioblastoma multiforme(486;0.0224)	L-Glutamic Acid(DB00142)|L-Isoleucine(DB00167)|L-Leucine(DB00149)|Pyridoxal Phosphate(DB00114)	CAACTCCAGCTTGTCGAAACT	0.662													4	71					0	0	1	0	0	
PPFIA3	8541	broad.mit.edu	37	19	49642973	49642973	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:49642973G>A	uc002pmr.2	+	17	2457	c.2125G>A	c.(2125-2127)GCC>ACC	p.A709T	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.A577T	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	709						cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		GGAGGGGCCGGCCATCCCAGG	0.627													18	55					0	0	1	0	0	
PRR12	57479	broad.mit.edu	37	19	50099565	50099565	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:50099565C>T	uc002poo.3	+	4	1973	c.1973C>T	c.(1972-1974)GCG>GTG	p.A658V		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		ACCTCAGGGGCGGACGGCTTG	0.701													8	10					0	0	1	0	0	
PRMT1	3276	broad.mit.edu	37	19	50189959	50189959	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:50189959C>T	uc010enf.1	+	10	1050	c.1008C>T	c.(1006-1008)GGC>GGT	p.G336G	PRMT1_uc002ppc.1_RNA|PRMT1_uc002ppd.2_Silent_p.G312G|PRMT1_uc002ppe.2_Silent_p.G318G|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Silent_p.G283G|PRMT1_uc010ybb.1_5'Flank|C19orf76_uc002pph.2_5'Flank	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	317						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		GCACCATCGGCATGCGGCCCA	0.448													6	66					0	0	1	0	0	
TSKS	60385	broad.mit.edu	37	19	50249873	50249873	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:50249873G>A	uc002ppm.2	-	6	857	c.846C>T	c.(844-846)TGC>TGT	p.C282C		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	282							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GCGGGCCGGGGCAGCCCTGGG	0.567													11	33					0	0	1	0	0	
MYH14	79784	broad.mit.edu	37	19	50794294	50794294	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:50794294C>T	uc002prr.1	+	34	5040	c.4993C>T	c.(4993-4995)CGC>TGC	p.R1665C	MYH14_uc010enu.1_Missense_Mutation_p.R1706C|MYH14_uc002prq.1_Missense_Mutation_p.R1673C|MYH14_uc010ycb.1_Missense_Mutation_p.R16C|MYH14_uc002prs.1_Missense_Mutation_p.R16C	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1665	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		GAAGCAGCTTCGCAAGATGCA	0.642													9	24					0	0	1	0	0	
POLD1	5424	broad.mit.edu	37	19	50910265	50910265	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:50910265G>A	uc002psb.3	+	13	1576	c.1520G>A	c.(1519-1521)CGC>CAC	p.R507H	POLD1_uc002psc.3_Missense_Mutation_p.R507H|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Missense_Mutation_p.R507H	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	507					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		ACCCGCCGCCGCCTGGCTGTG	0.418								DNA_polymerases_(catalytic_subunits)					14	137					0	0	1	0	0	
LRRC4B	94030	broad.mit.edu	37	19	51021034	51021034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:51021034C>T	uc002pss.2	-	3	2073	c.1936G>A	c.(1936-1938)GGG>AGG	p.G646R		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	646	Cytoplasmic (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		TGGCTGTCCCCGCCCACACCA	0.721													6	11					0	0	1	0	0	
GPR32	2854	broad.mit.edu	37	19	51273872	51273872	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:51273872G>A	uc010ycf.1	+	1	15	c.15G>A	c.(13-15)TCG>TCA	p.S5S		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	5	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		ATGGGGTCTCGGAGGGGACCA	0.383													3	16					0	0	1	0	0	
KLK15	55554	broad.mit.edu	37	19	51330229	51330229	+	Missense_Mutation	SNP	G	A	A	rs139927076		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:51330229G>A	uc002ptl.2	-	3	417	c.386C>T	c.(385-387)ACG>ATG	p.T129M	KLK15_uc002ptm.2_Intron|KLK15_uc002ptn.2_Missense_Mutation_p.T129M|KLK15_uc002pto.2_Missense_Mutation_p.T128M|KLK15_uc010ych.1_Intron|KLK15_uc010yci.1_Missense_Mutation_p.T128M|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	129	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		GGGGCAACGCGTGGGTAGCAC	0.716													28	45					0	0	1	0	0	
SIGLEC5	8778	broad.mit.edu	37	19	52130718	52130718	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:52130718G>T	uc002pxe.2	-	6	1418	c.1279C>A	c.(1279-1281)CAA>AAA	p.Q427K		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	427	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CCCTGACCTTGCAGCAGCAGG	0.642													53	138					4.09171e-25	4.50772e-25	1	1	0	
ZNF350	59348	broad.mit.edu	37	19	52469195	52469195	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:52469195G>A	uc002pyd.2	-	5	739	c.511C>T	c.(511-513)CGA>TGA	p.R171*	uc002pyb.2_Intron|uc002pyc.2_Intron	NM_021632	NP_067645	Q9GZX5	ZN350_HUMAN	zinc finger protein 350	171					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix|transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			breast(1)	1		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0179)		GTATGAAGTCGTTCATGGTTA	0.373													27	105					0	0	1	0	0	
ZNF616	90317	broad.mit.edu	37	19	52618898	52618898	+	Missense_Mutation	SNP	G	A	A	rs149072042	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:52618898G>A	uc002pym.2	-	4	1802	c.1519C>T	c.(1519-1521)CGT>TGT	p.R507C	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	507	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		ACTGCAAGACGTGAATGTTGA	0.433													24	126					0	0	1	0	0	
ZNF83	55769	broad.mit.edu	37	19	53116634	53116634	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:53116634T>C	uc002pzu.3	-	2	2428	c.1184A>G	c.(1183-1185)CAT>CGT	p.H395R	ZNF83_uc002pzv.3_Missense_Mutation_p.H395R|ZNF83_uc010eps.2_Missense_Mutation_p.H367R|ZNF83_uc010ept.2_Missense_Mutation_p.H395R|ZNF83_uc010epu.2_Missense_Mutation_p.H395R|ZNF83_uc010epv.2_Missense_Mutation_p.H395R|ZNF83_uc010epw.2_Missense_Mutation_p.H395R|ZNF83_uc010epx.2_Missense_Mutation_p.H367R|ZNF83_uc010epy.2_Missense_Mutation_p.H395R|ZNF83_uc010epz.2_Missense_Mutation_p.H367R	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	395	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		CTCTCCAGTATGGATTCTGTG	0.363													11	106					0	0	1	0	0	
ZNF320	162967	broad.mit.edu	37	19	53367219	53367219	+	RNA	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:53367219A>G	uc010eqh.1	-	3		c.458T>C			ZNF320_uc010eqi.1_RNA			A2RRD8	ZN320_HUMAN	Homo sapiens full length insert cDNA clone ZD42C02.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		AAAAGAGAATACAAAACCAGG	0.313													5	29					0	0	1	0	0	
ZNF415	55786	broad.mit.edu	37	19	53612025	53612025	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:53612025A>G	uc002qax.2	-	7	1766	c.1417T>C	c.(1417-1419)TCA>CCA	p.S473P	ZNF415_uc002qat.2_Missense_Mutation_p.S437P|ZNF415_uc002qaw.2_Missense_Mutation_p.S425P|ZNF415_uc010yds.1_Missense_Mutation_p.S425P|ZNF415_uc010ydt.1_Missense_Mutation_p.S425P|ZNF415_uc002qau.2_Missense_Mutation_p.S412P|ZNF415_uc002qav.2_Missense_Mutation_p.S437P|ZNF415_uc002qba.2_Missense_Mutation_p.S195P|ZNF415_uc002qay.2_Missense_Mutation_p.S412P|ZNF415_uc002qaz.2_Missense_Mutation_p.S473P	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	473	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		GCAAGGTGTGAATTGTAACTG	0.418													4	128					0	0	1	0	0	
MIR515-1	574462	broad.mit.edu	37	19	54182284	54182284	+	RNA	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:54182284G>T	hsa-mir-515-1|MI0003144	+			c.28G>T			uc010ydz.1_RNA|MIR519E_hsa-mir-519e|MI0003145_5'Flank																	0						CCAAAAGAAAGCACTTTCTGT	0.378													5	33					0.0215528	0.0217946	1	1	0	
LILRA5	353514	broad.mit.edu	37	19	54822903	54822903	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:54822903G>A	uc002qfe.2	-	5	613	c.493C>T	c.(493-495)CGG>TGG	p.R165W	LILRA5_uc002qff.2_Missense_Mutation_p.R153W|LILRA5_uc010yev.1_Missense_Mutation_p.R165W|LILRA5_uc010yew.1_Missense_Mutation_p.R153W|LILRA5_uc002qfh.1_Missense_Mutation_p.R153W|LILRA5_uc002qfg.1_Missense_Mutation_p.R165W	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	165	Extracellular (Potential).|Ig-like C2-type 2.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AATCTCAGCCGTGAGCCACAC	0.582													7	79					0	0	1	0	0	
LILRA4	23547	broad.mit.edu	37	19	54848764	54848764	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:54848764G>A	uc002qfj.2	-	5	916	c.859C>T	c.(859-861)CGC>TGC	p.R287C	LILRA4_uc002qfi.2_Missense_Mutation_p.R221C	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	287	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CCGTAGGAGCGGCTCACAGGG	0.682													14	37					0	0	1	0	0	
FCAR	2204	broad.mit.edu	37	19	55401033	55401033	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:55401033A>G	uc002qhr.1	+	5	865	c.668A>G	c.(667-669)TAC>TGC	p.Y223C	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.Y174C|FCAR_uc010esi.1_Missense_Mutation_p.Y100C|FCAR_uc002qhu.1_Missense_Mutation_p.Y127C|FCAR_uc002qhv.1_Missense_Mutation_p.Y201C|FCAR_uc002qhw.1_Missense_Mutation_p.Y211C|FCAR_uc002qhx.1_Missense_Mutation_p.Y115C|FCAR_uc002qhy.1_Missense_Mutation_p.Y189C|FCAR_uc002qhz.1_Silent_p.L186L|FCAR_uc002qia.1_Missense_Mutation_p.Y114C	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	223	Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CACCAAGATTACACGACGCAG	0.537													41	484					0	0	1	0	0	
RPL28	6158	broad.mit.edu	37	19	55899400	55899400	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:55899400G>A	uc002qkv.2	+	4	350	c.308G>A	c.(307-309)CGC>CAC	p.R103H	RPL28_uc010yga.1_Missense_Mutation_p.R103H|RPL28_uc010ygb.1_Missense_Mutation_p.R103H|RPL28_uc002qkw.1_3'UTR	NM_000991	NP_000982	P46779	RL28_HUMAN	ribosomal protein L28 isoform 2	103					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	protein binding|RNA binding|structural constituent of ribosome				0	Breast(117;0.191)	Renal(1328;0.245)	LUSC - Lung squamous cell carcinoma(43;0.13)|BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0443)		AACAAGTACCGCCCCGACCTG	0.607													9	78					0	0	1	0	0	
ZNF628	89887	broad.mit.edu	37	19	55993235	55993235	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:55993235G>A	uc002qld.2	+	3	1228	c.663G>A	c.(661-663)ACG>ACA	p.T221T		NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	221	C2H2-type 7.					nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		ACCAGCGCACGCAcggcgccg	0.542													5	1					0	0	1	0	0	
U2AF2	11338	broad.mit.edu	37	19	56166473	56166473	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:56166473G>A	uc002qlu.2	+	1	1058	c.3G>A	c.(1-3)ATG>ATA	p.M1I	U2AF2_uc002qlt.2_Missense_Mutation_p.M1I	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	1					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		GCCTCAGCATGTCGGACTTCG	0.682													5	33					0	0	1	0	0	
ZNF787	126208	broad.mit.edu	37	19	56599515	56599515	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:56599515G>A	uc010eth.1	-	3	1145	c.1026C>T	c.(1024-1026)GGC>GGT	p.G342G		NM_001002836	NP_001002836	Q6DD87	ZN787_HUMAN	zinc finger protein 787	342					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;3.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0559)		CCGAGGGCGCGCCCACCGCGT	0.756													4	22					0	0	1	0	0	
ZNF71	58491	broad.mit.edu	37	19	57133439	57133439	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:57133439C>T	uc002qnm.3	+	3	1022	c.784C>T	c.(784-786)CGC>TGC	p.R262C		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	262	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		CGTGCACCAGCGCACGCACAC	0.672													10	47					0	0	1	0	0	
ZIM2	23619	broad.mit.edu	37	19	57286450	57286450	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:57286450G>T	uc002qnr.2	-	11	1572	c.1190C>A	c.(1189-1191)GCG>GAG	p.A397E	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Missense_Mutation_p.A193E|ZIM2_uc010ygr.1_Missense_Mutation_p.A193E|ZIM2_uc002qnq.2_Missense_Mutation_p.A397E|ZIM2_uc010etp.2_Missense_Mutation_p.A397E|ZIM2_uc010ygs.1_Missense_Mutation_p.A397E	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	397					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		ACAGAGATTCGCACACTGGAC	0.458													9	44					9.70103e-10	1.04061e-09	1	1	0	
PEG3	5178	broad.mit.edu	37	19	57325987	57325987	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:57325987T>G	uc002qnu.2	-	7	4174	c.3823A>C	c.(3823-3825)AGT>CGT	p.S1275R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S1246R|PEG3_uc002qnv.2_Missense_Mutation_p.S1275R|PEG3_uc002qnw.2_Missense_Mutation_p.S1151R|PEG3_uc002qnx.2_Missense_Mutation_p.S1149R|PEG3_uc010etr.2_Missense_Mutation_p.S1275R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1275					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCGGTCTGACTTCTCTGAAAC	0.463													3	47					0	0	1	0	0	
ZNF805	390980	broad.mit.edu	37	19	57765778	57765778	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:57765778A>G	uc010ygt.1	+	4	1798	c.1591A>G	c.(1591-1593)ATC>GTC	p.I531V	ZNF805_uc010ygu.1_Missense_Mutation_p.I398V	NM_001023563	NP_001018857	Q5CZA5	ZN805_HUMAN	zinc finger protein 805 isoform 1	531	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCGACACTCTATCATCCACAC	0.507													5	71					0	0	1	0	0	
ZNF543	125919	broad.mit.edu	37	19	57840273	57840273	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:57840273C>T	uc002qoi.1	+	4	1788	c.1443C>T	c.(1441-1443)TGC>TGT	p.C481C		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	481	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CCTATGAGTGCGTGGAGTGTG	0.493													8	73					0	0	1	0	0	
ZBTB45	84878	broad.mit.edu	37	19	59028928	59028928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:59028928C>T	uc002qtd.2	-	2	405	c.113G>A	c.(112-114)CGC>CAC	p.R38H	ZBTB45_uc002qte.2_Missense_Mutation_p.R38H|ZBTB45_uc002qtf.2_Missense_Mutation_p.R38H	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	38	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		TTCACGAATGCGCACAGTCAC	0.602											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	31					0	0	1	0	0	
TMEM18	129787	broad.mit.edu	37	2	675583	675583	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:675583G>A	uc002qwl.2	-	2	199	c.105C>T	c.(103-105)CAC>CAT	p.H35H	TMEM18_uc002qwk.2_RNA|uc002qwm.1_5'Flank	NM_152834	NP_690047	Q96B42	TMM18_HUMAN	transmembrane protein 18	35	Helical; (Potential).				cell migration	integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;5.27e-05)|all_epithelial(98;2.11e-06)|Ovarian(717;0.0253)		all cancers(51;1.95e-21)|Epithelial(75;9.47e-21)|OV - Ovarian serous cystadenocarcinoma(76;8.15e-18)|GBM - Glioblastoma multiforme(21;0.0285)		CGCAGAGCGCGTGGAAGGTGG	0.572													23	47					0	0	1	0	0	
RNF144A	9781	broad.mit.edu	37	2	7164594	7164594	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:7164594A>G	uc002qys.2	+	7	1046	c.604A>G	c.(604-606)ATG>GTG	p.M202V	RNF144A_uc002qyt.2_Missense_Mutation_p.M51V	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	202	RING-type 2; degenerate.					Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		CGCGCAGATGATGTGCAAGAA	0.547													25	51					0	0	1	0	0	
KIDINS220	57498	broad.mit.edu	37	2	8957838	8957838	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:8957838C>T	uc002qzc.2	-	4	398	c.216G>A	c.(214-216)TGG>TGA	p.W72*	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Nonsense_Mutation_p.W30*|KIDINS220_uc010yiw.1_Nonsense_Mutation_p.W72*	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	72	Cytoplasmic (Potential).|ANK 3.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TAAGTGCTGTCCAATTATCCT	0.353													8	120					0	0	1	0	0	
E2F6	1876	broad.mit.edu	37	2	11587798	11587798	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:11587798C>A	uc002rbh.2	-	6	1046	c.754G>T	c.(754-756)GGG>TGG	p.G252W	E2F6_uc002rbe.2_Missense_Mutation_p.G177W|E2F6_uc002rbf.2_Missense_Mutation_p.G220W|E2F6_uc002rbg.2_Missense_Mutation_p.G177W|E2F6_uc002rbi.2_Missense_Mutation_p.G177W|E2F6_uc010yjl.1_RNA	NM_198256	NP_937987	O75461	E2F6_HUMAN	E2F transcription factor 6	252	Transcription repression.				negative regulation of transcription from RNA polymerase II promoter	MLL1 complex|transcription factor complex	DNA binding|transcription corepressor activity			skin(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.114)|OV - Ovarian serous cystadenocarcinoma(76;0.168)		GAAGAGGTCCCGACACCTTCA	0.433													7	138					2.74318e-10	2.94995e-10	1	1	0	
GREB1	9687	broad.mit.edu	37	2	11706636	11706636	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:11706636T>G	uc002rbk.1	+	4	608	c.308T>G	c.(307-309)CTT>CGT	p.L103R	GREB1_uc002rbl.2_Missense_Mutation_p.L103R|GREB1_uc002rbm.2_5'UTR|GREB1_uc002rbn.1_Missense_Mutation_p.L103R	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	103						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GACCTGCGCCTTGTCTCCATT	0.647													5	57					0	0	1	0	0	
GREB1	9687	broad.mit.edu	37	2	11774326	11774326	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:11774326C>T	uc002rbk.1	+	29	5361	c.5061C>T	c.(5059-5061)GAC>GAT	p.D1687D	GREB1_uc002rbp.1_Silent_p.D685D	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1687						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CGGCCCCCGACATCATGCACT	0.617													28	82					0	0	1	0	0	
LAPTM4A	9741	broad.mit.edu	37	2	20251253	20251253	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:20251253C>T	uc002rdm.2	-	1	537	c.29G>A	c.(28-30)CGC>CAC	p.R10H	LAPTM4A_uc002rdn.2_5'UTR|LAPTM4A_uc010yjx.1_Missense_Mutation_p.R10H	NM_014713	NP_055528	Q15012	LAP4A_HUMAN	lysosomal protein transmembrane 4 alpha	10					transport	endomembrane system|Golgi apparatus|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCGGTCACTGCGGTTCCGCTT	0.627													6	6					0	0	1	0	0	
GDF7	151449	broad.mit.edu	37	2	20871149	20871149	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:20871149C>T	uc002rdz.1	+	2	1893	c.1317C>T	c.(1315-1317)TAC>TAT	p.Y439Y		NM_182828	NP_878248	Q7Z4P5	GDF7_HUMAN	growth differentiation factor 7 preproprotein	439					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACAAGCAATACGAGGACATGG	0.687													8	32					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21228086	21228086	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:21228086G>A	uc002red.2	-	26	11782	c.11654C>T	c.(11653-11655)GCA>GTA	p.A3885V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3885					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTCAAAGCGTGCAGTCAGTGC	0.468													20	69					0	0	1	0	0	
APOB	338	broad.mit.edu	37	2	21232835	21232835	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:21232835C>A	uc002red.2	-	26	7033	c.6905G>T	c.(6904-6906)GGA>GTA	p.G2302V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2302					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATTGTAGTTCCCAATTGATC	0.328													7	148					0.307466	0.307826	1	1	0	
APOB	338	broad.mit.edu	37	2	21233839	21233839	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:21233839T>G	uc002red.2	-	26	6029	c.5901A>C	c.(5899-5901)AAA>AAC	p.K1967N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1967					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGGCACTGACTTTGTGTTCAA	0.453													13	65					0	0	1	0	0	
MFSD2B	388931	broad.mit.edu	37	2	24244805	24244805	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:24244805G>A	uc002reo.1	+	8	873	c.859G>A	c.(859-861)GTG>ATG	p.V287M		NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	287	Helical; (Potential).				transport	integral to membrane				ovary(2)	2						CCTGAAGCTGGTGATCTCCTT	0.617													13	142					0	0	1	0	0	
HADHA	3030	broad.mit.edu	37	2	26414471	26414471	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:26414471C>T	uc002rgy.2	-	19	2157	c.2027G>A	c.(2026-2028)CGC>CAC	p.R676H	HADHA_uc010yks.1_Missense_Mutation_p.R589H	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	676					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	TGTCACCAGGCGGAACTGGAT	0.532													9	50					0	0	1	0	0	
OTOF	9381	broad.mit.edu	37	2	26684998	26684998	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:26684998G>A	uc002rhk.2	-	42	5371	c.5244C>T	c.(5242-5244)GAC>GAT	p.D1748D	OTOF_uc010yla.1_Silent_p.D478D|OTOF_uc002rhh.2_Silent_p.D981D|OTOF_uc002rhi.2_Silent_p.D1058D|OTOF_uc002rhj.2_Silent_p.D981D	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1748	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAAGTCGTCGTCCTCCAAGA	0.607													82	231					0	0	1	0	0	
C2orf70	339778	broad.mit.edu	37	2	26802284	26802284	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:26802284G>A	uc010eyn.2	+	4	584	c.584G>A	c.(583-585)TGC>TAC	p.C195Y		NM_001105519	NP_001098989	A6NJV1	CB070_HUMAN	hypothetical protein LOC339778	195										skin(1)	1						AAGAGAGACTGCTACTTTGAG	0.502													28	62					0	0	1	0	0	
AGBL5	60509	broad.mit.edu	37	2	27276774	27276774	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:27276774C>T	uc002rie.2	+	4	615	c.398C>T	c.(397-399)ACG>ATG	p.T133M	AGBL5_uc002ric.2_Missense_Mutation_p.T133M|AGBL5_uc002rid.2_Missense_Mutation_p.T133M|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	133					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATGACAGAGACGCAGTTTGTG	0.552													6	75					0	0	1	0	0	
EMILIN1	11117	broad.mit.edu	37	2	27307392	27307392	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:27307392G>A	uc002rii.3	+	5	2978	c.2550G>A	c.(2548-2550)GGG>GGA	p.G850G	EMILIN1_uc002rik.3_Silent_p.G85G|KHK_uc002ril.2_5'Flank|KHK_uc002rim.2_5'Flank|KHK_uc002rin.2_5'Flank|KHK_uc002rio.2_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	850	Collagen-like.|Potential.				cell adhesion	collagen		p.G850R(1)		pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCCCATCGGGCCACCAGGTA	0.687													4	38					0	0	1	0	0	
GTF3C2	2976	broad.mit.edu	37	2	27566379	27566379	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:27566379C>T	uc002rjv.1	-	3	406	c.43G>A	c.(43-45)GGC>AGC	p.G15S	GTF3C2_uc002rju.1_Missense_Mutation_p.G26S|GTF3C2_uc002rjw.1_Missense_Mutation_p.G15S|GTF3C2_uc010eyz.1_Missense_Mutation_p.G15S	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	15						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCACGGGGCCGGCCTCCCCC	0.557													9	103					0	0	1	0	0	
IFT172	26160	broad.mit.edu	37	2	27702965	27702965	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:27702965C>T	uc002rku.2	-	9	888	c.837G>A	c.(835-837)AAG>AAA	p.K279K	IFT172_uc002rkw.2_Silent_p.K279K|IFT172_uc010yls.1_Silent_p.K258K|IFT172_uc010ezc.2_Silent_p.K279K|IFT172_uc002rkv.2_Silent_p.K279K	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	279					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TCTCCTTGGGCTTTGCCTCTT	0.478													3	50					0	0	1	0	0	
CCDC121	79635	broad.mit.edu	37	2	27850186	27850186	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:27850186C>T	uc002rle.2	-	2	662	c.481G>A	c.(481-483)GAC>AAC	p.D161N	ZNF512_uc010yly.1_Intron|CCDC121_uc010eze.2_Missense_Mutation_p.D325N|CCDC121_uc002rld.2_Missense_Mutation_p.D323N|GPN1_uc010ezf.2_5'Flank|GPN1_uc010yma.1_5'Flank|GPN1_uc010ymb.1_5'Flank|GPN1_uc010ymc.1_5'Flank|GPN1_uc010ymd.1_5'Flank|GPN1_uc010yme.1_5'Flank|GPN1_uc010ezg.1_5'Flank	NM_024584	NP_078860	Q6ZUS5	CC121_HUMAN	coiled-coil domain containing 121 isoform 3	161	Potential.										0	Acute lymphoblastic leukemia(172;0.155)					AGCCTCCTGTCTGGCTCGCTC	0.478													6	53					0	0	1	0	0	
FOSL2	2355	broad.mit.edu	37	2	28627100	28627100	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:28627100C>A	uc002rma.2	+	2	1038	c.229C>A	c.(229-231)CCT>ACT	p.P77T	FOSL2_uc010ymi.1_Missense_Mutation_p.P38T	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	77					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					CAACCCATACCCTCGCTCGCA	0.627													11	145					1.05317e-09	1.1283e-09	1	1	0	
C2orf71	388939	broad.mit.edu	37	2	29296745	29296745	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:29296745T>C	uc002rmt.1	-	1	383	c.383A>G	c.(382-384)GAC>GGC	p.D128G		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	128					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TCCAGAAAAGTCTGCCCCTTG	0.468													11	113					0	0	1	0	0	
FEZ2	9637	broad.mit.edu	37	2	36818143	36818143	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:36818143G>A	uc002rph.2	-	2	325	c.278C>T	c.(277-279)GCC>GTC	p.A93V	FEZ2_uc002rpf.2_5'UTR|FEZ2_uc002rpg.2_Missense_Mutation_p.A93V|FEZ2_uc002rpi.2_Intron|FEZ2_uc002rpj.2_Missense_Mutation_p.A93V	NM_005102	NP_005093	Q9UHY8	FEZ2_HUMAN	zygin 2 isoform 1	93					axon guidance|signal transduction		protein binding			ovary(1)	1		all_hematologic(82;0.21)				ATCTGTCAGGGCATTCCAAAT	0.368													7	18					0	0	1	0	0	
PRKD3	23683	broad.mit.edu	37	2	37483955	37483955	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:37483955G>A	uc002rqd.2	-	16	2818	c.2263C>T	c.(2263-2265)CGT>TGT	p.R755C	PRKD3_uc002rqe.1_Missense_Mutation_p.R355C	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	755	Protein kinase.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				TCTAGGGAACGGTTGTAACCT	0.433													41	97					0	0	1	0	0	
DHX57	90957	broad.mit.edu	37	2	39070156	39070156	+	Missense_Mutation	SNP	G	A	A	rs145590165		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:39070156G>A	uc002rrf.2	-	12	2515	c.2416C>T	c.(2416-2418)CGC>TGC	p.R806C	DHX57_uc002rrd.3_Missense_Mutation_p.R190C|DHX57_uc002rre.2_Missense_Mutation_p.R239C	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	806							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				CCTTTATAGCGGGCCAGGAGC	0.408													12	35					0	0	1	0	0	
PPM1B	5495	broad.mit.edu	37	2	44428909	44428909	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:44428909C>T	uc002rtt.2	+	2	999	c.571C>T	c.(571-573)CGT>TGT	p.R191C	PPM1B_uc002rts.2_Missense_Mutation_p.R191C|PPM1B_uc002rtu.2_Missense_Mutation_p.R191C|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.R191C|PPM1B_uc002rtx.2_Missense_Mutation_p.R191C	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	191					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GATGATACAACGTGTTAATGG	0.468													24	70					0	0	1	0	0	
SLC3A1	6519	broad.mit.edu	37	2	44528255	44528255	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:44528255C>T	uc002ruc.3	+	6	1203	c.1125C>T	c.(1123-1125)CCC>CCT	p.P375P	SLC3A1_uc002rty.2_Silent_p.P375P|SLC3A1_uc002rtz.2_Silent_p.P375P|SLC3A1_uc002rua.2_Silent_p.P375P|SLC3A1_uc002rub.2_Silent_p.P375P|SLC3A1_uc002rud.3_Silent_p.P97P|SLC3A1_uc002rue.3_5'Flank	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	375	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	GCACGGAGCCCGGCAGATACA	0.527													13	37					0	0	1	0	0	
KLRAQ1	129285	broad.mit.edu	37	2	48692092	48692092	+	Silent	SNP	C	T	T	rs140345835	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:48692092C>T	uc002rwm.2	+	8	896	c.711C>T	c.(709-711)AAC>AAT	p.N237N	KLRAQ1_uc002rwi.1_Silent_p.N237N|KLRAQ1_uc002rwj.2_Silent_p.N237N|KLRAQ1_uc002rwl.2_Silent_p.N191N|KLRAQ1_uc002rwk.2_Silent_p.N237N|KLRAQ1_uc010yok.1_Silent_p.N237N	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	237										ovary(1)	1						GTCAGTACAACGCTCTGAACG	0.323													6	52					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	50170901	50170901	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:50170901G>A	uc010fbp.2	-	5	1769	c.962C>T	c.(961-963)GCA>GTA	p.A321V	NRXN1_uc002rxb.3_Missense_Mutation_p.A1058V|NRXN1_uc010fbq.2_Missense_Mutation_p.A1426V|NRXN1_uc002rxe.3_Missense_Mutation_p.A1356V|NRXN1_uc010yon.1_Missense_Mutation_p.A21V|NRXN1_uc002rxa.3_Missense_Mutation_p.A21V	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	321	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GGGACACTCTGCTGAGGCCAC	0.438													4	28					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	50464107	50464107	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:50464107A>G	uc010fbp.2	-	2	1068	c.261T>C	c.(259-261)GCT>GCC	p.A87A	NRXN1_uc002rxb.3_Silent_p.P794P|NRXN1_uc010fbq.2_Silent_p.P1162P|NRXN1_uc002rxe.3_Silent_p.P1122P|NRXN1_uc002rxc.1_RNA	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	87	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			ATGTCGTCCCAGCTGGAAAAC	0.408													15	56					0	0	1	0	0	
BCL11A	53335	broad.mit.edu	37	2	60688092	60688092	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:60688092G>A	uc002sae.1	-	4	2183	c.1955C>T	c.(1954-1956)ACG>ATG	p.T652M	BCL11A_uc002sab.2_Missense_Mutation_p.T652M|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.T321M|BCL11A_uc010ypj.1_Missense_Mutation_p.T618M|BCL11A_uc002sad.1_Missense_Mutation_p.T500M|BCL11A_uc002saf.1_Missense_Mutation_p.T618M	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	652					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CACGTTCTCCGTGTTGGGCAT	0.617			T	IGH@	B-CLL								11	43					0	0	1	0	0	
EHBP1	23301	broad.mit.edu	37	2	63206338	63206338	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:63206338C>T	uc002sby.2	+	16	3063	c.2581C>T	c.(2581-2583)CGA>TGA	p.R861*	EHBP1_uc010fcp.2_Nonsense_Mutation_p.R826*|EHBP1_uc002sbz.2_Nonsense_Mutation_p.R826*|EHBP1_uc002scb.2_Nonsense_Mutation_p.R826*	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	861	Potential.					cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AGATGAAGAGCGACGTCGGCA	0.433									Hereditary_Prostate_Cancer				4	79					0	0	1	0	0	
GKN2	200504	broad.mit.edu	37	2	69174390	69174390	+	Splice_Site	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:69174390C>T	uc002sfa.2	-	4	314	c.205_splice	c.e4-1	p.G69_splice	GKN2_uc002sfb.3_Splice_Site_p.G69_splice	NM_182536	NP_872342	Q86XP6	GKN2_HUMAN	trefoil factor interactions(z) 1 precursor							extracellular region					0						CAATGTAGCCCTGAGGCAGCA	0.488													21	47					0	0	1	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71163176	71163176	+	Missense_Mutation	SNP	G	A	A	rs143516810		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:71163176G>A	uc002shj.2	+	1	179	c.92G>A	c.(91-93)CGA>CAA	p.R31Q	ATP6V1B1_uc002shi.1_Missense_Mutation_p.R31Q|ATP6V1B1_uc010fdv.2_Missense_Mutation_p.R31Q|ATP6V1B1_uc010fdw.2_RNA	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	31					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCGGTCACCCGAAACTACATC	0.667													31	71					0	0	1	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71190412	71190412	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:71190412C>T	uc002shj.2	+	10	1117	c.1030C>T	c.(1030-1032)CAG>TAG	p.Q344*	ATP6V1B1_uc010fdv.2_Intron|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Nonsense_Mutation_p.Q302*	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	344					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						ATCCATCACACAGATCCCCAT	0.612													5	68					0	0	1	0	0	
ZNF638	27332	broad.mit.edu	37	2	71577059	71577059	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:71577059A>T	uc002shx.2	+	2	1294	c.975A>T	c.(973-975)CAA>CAT	p.Q325H	ZNF638_uc010fec.2_Missense_Mutation_p.Q431H|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.Q325H|ZNF638_uc002shy.2_Missense_Mutation_p.Q325H|ZNF638_uc002shz.2_Missense_Mutation_p.Q325H|ZNF638_uc002sia.2_Missense_Mutation_p.Q325H|ZNF638_uc002sib.1_Missense_Mutation_p.Q325H	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	325					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						CAATGAGTCAATCTCTGATTC	0.423													18	153					0	0	1	0	0	
DYSF	8291	broad.mit.edu	37	2	71762412	71762412	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:71762412C>T	uc002sie.2	+	15	1744	c.1368C>T	c.(1366-1368)TGC>TGT	p.C456C	DYSF_uc010feg.2_Silent_p.C487C|DYSF_uc010feh.2_Silent_p.C456C|DYSF_uc002sig.3_Silent_p.C456C|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.C456C|DYSF_uc010fef.2_Silent_p.C487C|DYSF_uc010fei.2_Silent_p.C487C|DYSF_uc010fek.2_Silent_p.C488C|DYSF_uc010fej.2_Silent_p.C457C|DYSF_uc010fel.2_Silent_p.C457C|DYSF_uc010feo.2_Silent_p.C488C|DYSF_uc010fem.2_Silent_p.C457C|DYSF_uc010fen.2_Silent_p.C488C|DYSF_uc002sif.2_Silent_p.C457C	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	456	Cytoplasmic (Potential).|C2 3.		C -> W (in MMD1).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CCTCCATGTGCGAAAAAATGA	0.522													31	85					0	0	1	0	0	
SFXN5	94097	broad.mit.edu	37	2	73198729	73198729	+	Silent	SNP	G	A	A	rs148361418	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:73198729G>A	uc002siq.2	-	11	842	c.711C>T	c.(709-711)CTC>CTT	p.L237L	SFXN5_uc002sio.2_Silent_p.L129L|SFXN5_uc010yrc.1_Silent_p.L86L|SFXN5_uc002sip.2_Intron|SFXN5_uc010fet.2_Intron|SFXN5_uc010fer.2_RNA|SFXN5_uc010feq.2_Silent_p.L19L|SFXN5_uc010fes.2_Silent_p.L19L	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	237					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						AGGAGCCCACGAGGTTGCCAT	0.612													17	40					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73747133	73747133	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:73747133C>T	uc002sje.1	+	13	9885	c.9774C>T	c.(9772-9774)CGC>CGT	p.R3258R	ALMS1_uc002sjf.1_Silent_p.R3214R|ALMS1_uc002sjg.2_Silent_p.R2644R|ALMS1_uc002sjh.1_Silent_p.R2644R|ALMS1_uc010fev.1_Silent_p.R73R	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3256					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CTTTTTCTCGCGGCACAGATG	0.403													15	166					0	0	1	0	0	
TPRKB	51002	broad.mit.edu	37	2	73957738	73957738	+	Missense_Mutation	SNP	C	A	A	rs144417465	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:73957738C>A	uc002sjn.2	-	4	501	c.390G>T	c.(388-390)CAG>CAT	p.Q130H	TPRKB_uc002sjm.2_Missense_Mutation_p.Q169H|TPRKB_uc002sjl.2_Missense_Mutation_p.Q97H|TPRKB_uc002sjo.2_Missense_Mutation_p.Q130H|TPRKB_uc010yrm.1_Missense_Mutation_p.Q97H	NM_016058	NP_057142	Q9Y3C4	TPRKB_HUMAN	TP53RK binding protein	130					protein catabolic process	cytosol|nucleus	protein kinase binding			ovary(1)|skin(1)	2						TCAGAGAAACCTGATGACCTT	0.313													4	50					0.00024832	0.000256562	1	1	0	
TET3	200424	broad.mit.edu	37	2	74317124	74317124	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:74317124C>T	uc002skb.3	+	5	2584	c.2584C>T	c.(2584-2586)CGG>TGG	p.R862W		NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	862							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CAAGTATGCTCGGAGCAAGAC	0.607													15	130					0	0	1	0	0	
SEMA4F	10505	broad.mit.edu	37	2	74906809	74906809	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:74906809T>C	uc002sna.1	+	14	1897	c.1786T>C	c.(1786-1788)TGT>CGT	p.C596R	SEMA4F_uc010ffr.1_Missense_Mutation_p.C208R|SEMA4F_uc002snb.1_Missense_Mutation_p.C208R|SEMA4F_uc002snc.1_Missense_Mutation_p.C441R	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	596	Ig-like C2-type.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ATGGGCATCCTGTGTGTGGCA	0.592													53	94					0	0	1	0	0	
LRRTM4	80059	broad.mit.edu	37	2	77746704	77746704	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:77746704A>G	uc002snr.2	-	3	706	c.291T>C	c.(289-291)ATT>ATC	p.I97I	LRRTM4_uc002snq.2_Silent_p.I97I|LRRTM4_uc002sns.2_Silent_p.I97I|LRRTM4_uc002snt.2_Silent_p.I98I	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	97	LRR 2.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CCACTGAGCTAATGTAATTAT	0.368													9	58					0	0	1	0	0	
CTNNA2	1496	broad.mit.edu	37	2	80874797	80874797	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:80874797A>G	uc010ysh.1	+	18	2667	c.2662A>G	c.(2662-2664)ACC>GCC	p.T888A	CTNNA2_uc010yse.1_Missense_Mutation_p.T840A|CTNNA2_uc010ysf.1_Missense_Mutation_p.T840A|CTNNA2_uc010ysg.1_Missense_Mutation_p.T795A|CTNNA2_uc010ysi.1_Missense_Mutation_p.T472A|CTNNA2_uc010ysj.1_Missense_Mutation_p.T169A	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	888					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TGTGGCCTCAACCAAATACCA	0.483													5	127					0	0	1	0	0	
TCF7L1	83439	broad.mit.edu	37	2	85532493	85532493	+	Missense_Mutation	SNP	C	T	T	rs138614113	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:85532493C>T	uc002soy.2	+	8	1030	c.956C>T	c.(955-957)CCG>CTG	p.P319L		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	319	Pro-rich.				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						AAGCAGGAACCGGCACCCCCC	0.662													5	49					0	0	1	0	0	
RNF103	7844	broad.mit.edu	37	2	86831536	86831536	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:86831536A>G	uc002srn.2	-	4	2457	c.1488T>C	c.(1486-1488)CCT>CCC	p.P496P	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Silent_p.P357P|uc002sro.2_Intron	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	496					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						GCCAAAGGTCAGGGAAAGCTA	0.443													9	77					0	0	1	0	0	
CD8A	925	broad.mit.edu	37	2	87017603	87017603	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:87017603A>G	uc002srt.2	-	2	1140	c.251T>C	c.(250-252)CTG>CCG	p.L84P	RMND5A_uc002srs.3_Intron|CD8A_uc002srv.2_Missense_Mutation_p.L84P|CD8A_uc010ytn.1_Missense_Mutation_p.L125P|CD8A_uc002sru.2_Missense_Mutation_p.L84P	NM_001768	NP_001759	P01732	CD8A_HUMAN	CD8 antigen alpha polypeptide isoform 1	84	Ig-like V-type.|Extracellular (Potential).				antigen processing and presentation|regulation of immune response|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			ovary(1)	1						CTGGGTGTCCAGCCCCTCGGC	0.662													11	100					0	0	1	0	0	
RPIA	22934	broad.mit.edu	37	2	89034099	89034099	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:89034099G>A	uc002ste.2	+	5	534	c.493G>A	c.(493-495)GTA>ATA	p.V165I		NM_144563	NP_653164	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	165					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			ovary(1)	1		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				TGCTGATGAAGTAGATGCTGA	0.428													9	83					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	2	89399582	89399582	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:89399582C>T	uc010ytr.1	-	46		c.4863G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GTGATGGTGACTCTGTCTCCT	0.483													10	128					0	0	1	0	0	
ANKRD20B	729171	broad.mit.edu	37	2	95522779	95522779	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:95522779C>T	uc010fhp.2	-	1		c.42G>A				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ACCTCCGCGGCGTCGCCTTTG	0.682													13	26					0	0	1	0	0	
ZNF2	7549	broad.mit.edu	37	2	95847304	95847304	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:95847304C>A	uc002suf.2	+	6	1190	c.728C>A	c.(727-729)TCC>TAC	p.S243Y	ZNF2_uc002sug.2_Missense_Mutation_p.S201Y|ZNF2_uc010yue.1_Missense_Mutation_p.S206Y|ZNF2_uc010fhs.2_Missense_Mutation_p.S164Y	NM_021088	NP_066574	Q9BSG1	ZNF2_HUMAN	zinc finger protein 2 isoform a	243	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(717;0.00768)		READ - Rectum adenocarcinoma(193;0.0222)		GACCGTTCGTCCCTAACTGTC	0.517													11	136					0.00010058	0.000104233	1	1	0	
INPP4A	3631	broad.mit.edu	37	2	99172076	99172076	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:99172076C>T	uc002syy.2	+	17	2035	c.1642C>T	c.(1642-1644)CTG>TTG	p.L548L	INPP4A_uc010yvj.1_Silent_p.L548L|INPP4A_uc010yvk.1_Silent_p.L548L|INPP4A_uc002syx.2_Silent_p.L543L|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	548					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						TGTGGACAAGCTGCTGCAGAA	0.582													15	38					0	0	1	0	0	
INPP4A	3631	broad.mit.edu	37	2	99204042	99204042	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:99204042G>A	uc002syy.2	+	26	3298	c.2905G>A	c.(2905-2907)GAA>AAA	p.E969K	INPP4A_uc010yvk.1_Missense_Mutation_p.E930K|INPP4A_uc002syx.2_Missense_Mutation_p.E964K|INPP4A_uc010fik.2_Missense_Mutation_p.E298K	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	969					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						CAGGCCTCCCGAAGGGACTTA	0.413													28	60					0	0	1	0	0	
TBC1D8	11138	broad.mit.edu	37	2	101644825	101644825	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:101644825G>A	uc010fiv.2	-	13	2378	c.2247C>T	c.(2245-2247)TCC>TCT	p.S749S	TBC1D8_uc002tau.3_Silent_p.S506S	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	749					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						CCTGGTCGTCGGAGAAAAAGG	0.587													3	57					0	0	1	0	0	
NCK2	8440	broad.mit.edu	37	2	106498353	106498353	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:106498353G>A	uc002tdg.2	+	4	1238	c.796G>A	c.(796-798)GCC>ACC	p.A266T	NCK2_uc002tdh.2_Intron|NCK2_uc002tdi.2_Missense_Mutation_p.A266T	NM_003581	NP_003572	O43639	NCK2_HUMAN	NCK adaptor protein 2 isoform A	266					axon guidance|epidermal growth factor receptor signaling pathway|negative regulation of cell proliferation|positive regulation of actin filament polymerization|positive regulation of T cell proliferation|regulation of epidermal growth factor receptor activity|regulation of translation|signal complex assembly|T cell activation	cytosol|endoplasmic reticulum	cytoskeletal adaptor activity|receptor signaling complex scaffold activity			ovary(1)|lung(1)	2						CCCTGCGCACGCCCCACAGAT	0.667													6	28					0	0	1	0	0	
RANBP2	5903	broad.mit.edu	37	2	109400128	109400128	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:109400128A>T	uc002tem.3	+	29	9572	c.9446A>T	c.(9445-9447)GAT>GTT	p.D3149V		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	3149	PPIase cyclophilin-type.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GAAAATTTTGATGTGAAACAT	0.343													5	115					0	0	1	0	0	
POLR1B	84172	broad.mit.edu	37	2	113332680	113332680	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:113332680A>G	uc002thw.2	+	15	3362	c.2782A>G	c.(2782-2784)ATG>GTG	p.M928V	POLR1B_uc010fkn.2_Missense_Mutation_p.M872V|POLR1B_uc002thx.2_Missense_Mutation_p.M789V|POLR1B_uc010fko.2_Missense_Mutation_p.M745V|POLR1B_uc010fkp.2_Missense_Mutation_p.M367V|POLR1B_uc010yxn.1_Missense_Mutation_p.M966V|POLR1B_uc002thy.2_Missense_Mutation_p.M789V|POLR1B_uc010yxo.1_Missense_Mutation_p.M705V	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	928					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						GACCATTGGGATGTTAATTGA	0.502													13	127					0	0	1	0	0	
TFCP2L1	29842	broad.mit.edu	37	2	121997199	121997199	+	Silent	SNP	G	A	A	rs143023699	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:121997199G>A	uc002tmx.2	-	8	888	c.795C>T	c.(793-795)TAC>TAT	p.Y265Y	TFCP2L1_uc010flr.2_Silent_p.Y265Y	NM_014553	NP_055368	Q9NZI6	TF2L1_HUMAN	LBP-9	265					female pregnancy|steroid biosynthetic process	mitochondrion|nucleolus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			pancreas(2)|ovary(1)	3	Renal(3;0.01)					TGTTCACCTGGTAGGCCACGT	0.627													8	59					0	0	1	0	0	
CLASP1	23332	broad.mit.edu	37	2	122215303	122215303	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:122215303T>C	uc002tnc.2	-	14	1735	c.1345A>G	c.(1345-1347)ATA>GTA	p.I449V	CLASP1_uc002tna.2_5'UTR|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.I449V|CLASP1_uc010yza.1_Missense_Mutation_p.I449V|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.I449V	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	449	HEAT 4.				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					TTGCTTGTTATGACAGGTATT	0.323													5	58					0	0	1	0	0	
POTEF	728378	broad.mit.edu	37	2	130832416	130832416	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:130832416G>A	uc010fmh.2	-	17	3029	c.2629C>T	c.(2629-2631)CGC>TGC	p.R877C		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	877	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						AGGTCTAGGCGCAGGGTGGCA	0.612													9	45					0	0	1	0	0	
POTEF	728378	broad.mit.edu	37	2	130877790	130877790	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:130877790T>G	uc010fmh.2	-	3	699	c.299A>C	c.(298-300)AAG>ACG	p.K100T		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	100						cell cortex	ATP binding	p.K100N(1)		skin(3)|ovary(2)	5						GCAGCACCACTTGCCCATCTT	0.607													9	271					0	0	1	0	0	
POTEE	445582	broad.mit.edu	37	2	131976274	131976274	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:131976274A>C	uc002tsn.2	+	1	351	c.299A>C	c.(298-300)AAG>ACG	p.K100T	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	100							ATP binding				0						AAGATGGGGAAGTGGTGCTGC	0.617													4	47					0	0	1	0	0	
GPR39	2863	broad.mit.edu	37	2	133403128	133403128	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:133403128G>A	uc002ttl.2	+	2	1780	c.1311G>A	c.(1309-1311)GCG>GCA	p.A437A	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	437						integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						ACTCAGGCGCGAAACCAGCCA	0.517													6	82					0	0	1	0	0	
LCT	3938	broad.mit.edu	37	2	136566490	136566490	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:136566490C>T	uc002tuu.1	-	8	3438	c.3427G>A	c.(3427-3429)GCT>ACT	p.A1143T		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1143	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		ATTCGGTCAGCGGCTTCCACA	0.557													16	49					0	0	1	0	0	
KYNU	8942	broad.mit.edu	37	2	143715236	143715236	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:143715236T>C	uc002tvl.2	+	7	664	c.534T>C	c.(532-534)CTT>CTC	p.L178L	KYNU_uc002tvk.2_Silent_p.L178L|KYNU_uc010fnm.2_Silent_p.L178L	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	178					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	AACTACAACTTCACGGACTTA	0.303													24	56					0	0	1	0	0	
ZEB2	9839	broad.mit.edu	37	2	145157300	145157300	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:145157300T>G	uc002tvu.2	-	8	1934	c.1454A>C	c.(1453-1455)AAG>ACG	p.K485T	ZEB2_uc002tvv.2_Missense_Mutation_p.K479T|ZEB2_uc010zbm.1_Missense_Mutation_p.K456T|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.K514T	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	485	SMAD-MH2 binding domain (By similarity).					cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		ACCTTTCAACTTTGAAATTTC	0.408													9	80					0	0	1	0	0	
RIF1	55183	broad.mit.edu	37	2	152324542	152324542	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:152324542T>C	uc002txm.2	+	31	6759	c.6629T>C	c.(6628-6630)ATA>ACA	p.I2210T	RIF1_uc002txl.2_Missense_Mutation_p.I2210T|RIF1_uc002txn.2_Missense_Mutation_p.I2210T|RIF1_uc002txo.2_Missense_Mutation_p.I2210T|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2210	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		GCAGATCCAATATACCAAGCA	0.353													10	90					0	0	1	0	0	
NR4A2	4929	broad.mit.edu	37	2	157182339	157182339	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:157182339G>A	uc002tyz.3	-	8	2136	c.1714C>T	c.(1714-1716)CGC>TGC	p.R572C	NR4A2_uc002tyx.3_Missense_Mutation_p.R509C|NR4A2_uc010zcf.1_Missense_Mutation_p.R572C	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	572					cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						TAGAAAATGCGCTGTAGCCCC	0.488													22	76					0	0	1	0	0	
FIGN	55137	broad.mit.edu	37	2	164467599	164467599	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:164467599G>A	uc002uck.1	-	3	1054	c.743C>T	c.(742-744)CCG>CTG	p.P248L		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	248	Pro-rich.					nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GCTAGCAGACGGATAGCTGTA	0.607													3	33					0	0	1	0	0	
CSRNP3	80034	broad.mit.edu	37	2	166535234	166535234	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:166535234C>T	uc002udf.2	+	7	1105	c.729C>T	c.(727-729)TGC>TGT	p.C243C	CSRNP3_uc002udg.2_Silent_p.C243C	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	243	Cys-rich.				apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						CTTTCCCATGCGGCTGCACTA	0.403													7	66					0	0	1	0	0	
SCN7A	6332	broad.mit.edu	37	2	167262882	167262882	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:167262882G>T	uc002udu.1	-	25	4384	c.4257C>A	c.(4255-4257)ACC>ACA	p.T1419T		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1419					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TGTTGCCAAAGGTTTCAAAAT	0.363													7	185					4.84862e-15	5.28043e-15	1	1	0	
XIRP2	129446	broad.mit.edu	37	2	168105930	168105930	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:168105930A>G	uc002udx.2	+	8	8046	c.8028A>G	c.(8026-8028)AAA>AAG	p.K2676K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K2501K|XIRP2_uc010fpq.2_Silent_p.K2454K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Silent_p.K22K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2501					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GCGAAATTAAACAAAGTCACC	0.378													5	56					0	0	1	0	0	
LRP2	4036	broad.mit.edu	37	2	170063685	170063685	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:170063685C>T	uc002ues.2	-	39	6758	c.6545G>A	c.(6544-6546)CGT>CAT	p.R2182H		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2182	LDL-receptor class B 21.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AAGAAGAACACGGCGGTAAGT	0.418													7	79					0	0	1	0	0	
LRP2	4036	broad.mit.edu	37	2	170103435	170103435	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:170103435C>T	uc002ues.2	-	21	3183	c.2970G>A	c.(2968-2970)CCG>CCA	p.P990P	LRP2_uc010zdf.1_Silent_p.P853P	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	990	EGF-like 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AATTTGGCACCGGGAAGCAGA	0.542													6	57					0	0	1	0	0	
GORASP2	26003	broad.mit.edu	37	2	171807902	171807902	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:171807902A>G	uc002ugk.2	+	5	640	c.500A>G	c.(499-501)AAC>AGC	p.N167S	GORASP2_uc002ugj.2_Missense_Mutation_p.N99S|GORASP2_uc010zdl.1_Missense_Mutation_p.N179S|GORASP2_uc010zdm.1_Missense_Mutation_p.N123S|GORASP2_uc002ugl.2_Missense_Mutation_p.N99S	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	167						Golgi membrane				breast(1)|central_nervous_system(1)	2						TATGTGTACAACACAGACACT	0.388													8	74					0	0	1	0	0	
HAT1	8520	broad.mit.edu	37	2	172844276	172844276	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:172844276G>T	uc002uhi.2	+	10	1168	c.1092G>T	c.(1090-1092)AAG>AAT	p.K364N	HAT1_uc010fqi.2_Missense_Mutation_p.K199N|HAT1_uc002uhj.2_Missense_Mutation_p.K279N	NM_003642	NP_003633	O14929	HAT1_HUMAN	histone acetyltransferase 1	364					chromatin silencing at telomere|DNA packaging	cytoplasm|nuclear matrix|nucleoplasm	histone acetyltransferase activity|protein binding			large_intestine(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GCCCATATAAGGTAGGACTTT	0.338													5	47					3.59834e-05	3.74717e-05	1	1	0	
SCRN3	79634	broad.mit.edu	37	2	175263039	175263039	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:175263039G>A	uc002uiq.2	+	2	116	c.28G>A	c.(28-30)GTG>ATG	p.V10M	CIR1_uc002uim.2_5'Flank|CIR1_uc002uin.2_5'Flank|CIR1_uc002uio.2_5'Flank|CIR1_uc002uip.2_5'Flank|SCRN3_uc010zen.1_Intron|SCRN3_uc010zeo.1_Translation_Start_Site|SCRN3_uc002uir.1_RNA	NM_024583	NP_078859	Q0VDG4	SCRN3_HUMAN	secernin 3	10					proteolysis		dipeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.229)			TGACACTTTCGTGGCATTACC	0.294													8	75					0	0	1	0	0	
EVX2	344191	broad.mit.edu	37	2	176945561	176945561	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:176945561C>T	uc010zeu.1	-	3	891	c.705G>A	c.(703-705)TGG>TGA	p.W235*		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	235	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		GGTTCTGGAACCACACCTGCG	0.672													3	21					0	0	1	0	0	
HOXD3	3232	broad.mit.edu	37	2	177036780	177036780	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:177036780C>T	uc002ukt.1	+	3	1253	c.1077C>T	c.(1075-1077)GGC>GGT	p.G359G		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	359					anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		TGTACGTGGGCGGCAACTTCG	0.697													6	11					0	0	1	0	0	
HOXD1	3231	broad.mit.edu	37	2	177054563	177054563	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:177054563G>A	uc002ukv.3	+	2	903	c.680G>A	c.(679-681)AGC>AAC	p.S227N	HOXD1_uc010fqy.2_Silent_p.*271*|HOXD1_uc010zez.1_Missense_Mutation_p.S227N	NM_024501	NP_078777	Q9GZZ0	HXD1_HUMAN	homeobox D1	227						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.0226)		GGGGCCGCTAGCCCCTCCAGC	0.557													8	119					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179430621	179430621	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179430621G>A	uc010zfg.1	-	275	72758	c.72534C>T	c.(72532-72534)AAC>AAT	p.N24178N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.N17873N|TTN_uc010zfi.1_Silent_p.N17806N|TTN_uc010zfj.1_Silent_p.N17681N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25105							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCTGTAAGGTTTTCCACTT	0.398													11	127					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179438533	179438533	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179438533C>T	uc010zfg.1	-	275	64846	c.64622G>A	c.(64621-64623)GGC>GAC	p.G21541D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G15236D|TTN_uc010zfi.1_Missense_Mutation_p.G15169D|TTN_uc010zfj.1_Missense_Mutation_p.G15044D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22468							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTAGCAAAGCCACCAGGATT	0.398													17	39					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179440424	179440424	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179440424G>A	uc010zfg.1	-	275	62955	c.62731C>T	c.(62731-62733)CGG>TGG	p.R20911W	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R14606W|TTN_uc010zfi.1_Missense_Mutation_p.R14539W|TTN_uc010zfj.1_Missense_Mutation_p.R14414W	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21838							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAAGATTTCCGTGTTGCTTCA	0.448													15	41					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179452031	179452031	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179452031C>T	uc010zfg.1	-	256	56427	c.56203G>A	c.(56203-56205)GTG>ATG	p.V18735M	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V12430M|TTN_uc010zfi.1_Missense_Mutation_p.V12363M|TTN_uc010zfj.1_Missense_Mutation_p.V12238M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19662							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGTTTCTCCACGATATAATGT	0.458													4	22					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179516199	179516199	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179516199T>C	uc010zfg.1	-	161	32450	c.32226A>G	c.(32224-32226)CCA>CCG	p.P10742P	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11669							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGGGCTTCTGGCTTTTTGG	0.478													8	39					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179596108	179596108	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179596108C>A	uc010zfg.1	-	56	13877	c.13653G>T	c.(13651-13653)AAG>AAT	p.K4551N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K1212N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5478							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCATCATGCTTGACTTCAA	0.408													18	267					1.01871e-10	1.09895e-10	1	1	0	
TTN	7273	broad.mit.edu	37	2	179606044	179606044	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179606044G>A	uc010zfh.1	-	46	11627	c.11403C>T	c.(11401-11403)TTC>TTT	p.F3801F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.F3734F|TTN_uc010zfj.1_Silent_p.F3609F|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTTTCTTTGAACCATGTAA	0.443													15	136					0	0	1	0	0	
CCDC141	285025	broad.mit.edu	37	2	179732925	179732925	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:179732925C>T	uc002unf.1	-	6	734	c.677G>A	c.(676-678)CGT>CAT	p.R226H		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	226							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTTGATGAGACGTCCCAGCTA	0.418													25	40					0	0	1	0	0	
CERKL	375298	broad.mit.edu	37	2	182423344	182423344	+	Nonsense_Mutation	SNP	G	A	A	rs121909398	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:182423344G>A	uc002unx.2	-	6	948	c.847C>T	c.(847-849)CGA>TGA	p.R283*	CERKL_uc002uny.2_Nonsense_Mutation_p.R257*|CERKL_uc010zfm.1_Nonsense_Mutation_p.R239*|CERKL_uc002unz.2_Nonsense_Mutation_p.R5*|CERKL_uc002uoa.2_Intron|CERKL_uc002uob.2_Nonsense_Mutation_p.R5*|CERKL_uc002uoc.2_Intron|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_Nonsense_Mutation_p.R52*|CERKL_uc002uoe.2_Nonsense_Mutation_p.R257*	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	283	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GTCAGGATTCGGTCTGTTTCC	0.483													4	74					0	0	1	0	0	
NEUROD1	4760	broad.mit.edu	37	2	182542664	182542664	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:182542664C>T	uc002uof.2	-	2	1160	c.924G>A	c.(922-924)CTG>CTA	p.L308L	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	308					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GGGCCCCTGCCAGTGTCGCTG	0.522													8	51					0	0	1	0	0	
NCKAP1	10787	broad.mit.edu	37	2	183902820	183902820	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:183902820C>T	uc002upc.2	-	1	410	c.8G>A	c.(7-9)CGC>CAC	p.R3H	NCKAP1_uc002upb.2_Missense_Mutation_p.R3H	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	3					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CAGCACTGAGCGCGACATGGT	0.557													4	14					0	0	1	0	0	
FAM171B	165215	broad.mit.edu	37	2	187605049	187605049	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:187605049G>A	uc002ups.2	+	2	445	c.333G>A	c.(331-333)AAG>AAA	p.K111K	FAM171B_uc002upr.1_Silent_p.K111K	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	111	Extracellular (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						ACTACACGAAGACAAATTCCA	0.388													4	58					0	0	1	0	0	
FAM171B	165215	broad.mit.edu	37	2	187615864	187615864	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:187615864T>C	uc002ups.2	+	5	840	c.728T>C	c.(727-729)TTT>TCT	p.F243S	FAM171B_uc002upr.1_Missense_Mutation_p.F243S	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	243	Extracellular (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						TTTATAGGTTTTGAAAACATT	0.308													9	97					0	0	1	0	0	
COL5A2	1290	broad.mit.edu	37	2	189927974	189927974	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:189927974C>T	uc002uqk.2	-	27	2068	c.1793G>A	c.(1792-1794)CGT>CAT	p.R598H	COL5A2_uc010frx.2_Missense_Mutation_p.R174H	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	598					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			AGGACCTGGACGGCCATCTTC	0.512													4	84					0	0	1	0	0	
STAT4	6775	broad.mit.edu	37	2	191897688	191897688	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:191897688G>A	uc002usm.1	-	21	2294	c.2040C>T	c.(2038-2040)TGC>TGT	p.C680C	STAT4_uc002usn.1_Silent_p.C680C|STAT4_uc010zgk.1_Silent_p.C525C|STAT4_uc002uso.2_Silent_p.C680C	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	680					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			CCTAACCTTCGCAAGGCTGAG	0.363													9	59					0	0	1	0	0	
SDPR	8436	broad.mit.edu	37	2	192701019	192701019	+	Missense_Mutation	SNP	C	T	T	rs146564406		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:192701019C>T	uc002utb.2	-	2	1238	c.908G>A	c.(907-909)CGA>CAA	p.R303Q		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	303						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TTCTCCCTCTCGGACTTTCTT	0.483													34	74					0	0	1	0	0	
MOBKL3	25843	broad.mit.edu	37	2	198415089	198415089	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:198415089G>A	uc002uun.3	+	7	565	c.525G>A	c.(523-525)CGG>CGA	p.R175R	MOBKL3_uc002uum.3_Silent_p.R143R|MOBKL3_uc010fsn.2_Silent_p.R154R|MOBKL3_uc010fso.2_Silent_p.R76R|MOBKL3_uc010zgz.1_Silent_p.R76R	NM_015387	NP_056202	Q9Y3A3	MOBL3_HUMAN	Mps One Binder kinase activator-like 3 isoform	175					transport	Golgi cisterna membrane|perinuclear region of cytoplasm	metal ion binding|protein binding				0			Epithelial(96;0.225)			TTCATCATCGGCAGATATTTG	0.313													6	21					0	0	1	0	0	
CLK1	1195	broad.mit.edu	37	2	201718647	201718647	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:201718647T>C	uc002uwe.2	-	12	1471	c.1290A>G	c.(1288-1290)TCA>TCG	p.S430S	CLK1_uc002uwd.2_Silent_p.S253S|CLK1_uc010zhi.1_Silent_p.S472S|CLK1_uc002uwf.2_Silent_p.S204S|CLK1_uc002uwg.2_Silent_p.S279S|CLK1_uc010fsv.2_RNA	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1	430	Protein kinase.				cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						TACAGCGTCTTGAAACATATC	0.303													14	105					0	0	1	0	0	
CASP10	843	broad.mit.edu	37	2	202074183	202074183	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:202074183T>G	uc002uxl.1	+	9	1731	c.1313T>G	c.(1312-1314)CTT>CGT	p.L438R	CASP10_uc002uxj.1_Missense_Mutation_p.L438R|CASP10_uc002uxk.1_Missense_Mutation_p.L395R|CASP10_uc010fta.1_Missense_Mutation_p.L371R|CASP10_uc002uxm.1_Missense_Mutation_p.L395R|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	438					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GACTTCCTACTTGGTCTGGCC	0.522													25	135					0	0	1	0	0	
ALS2CR4	65062	broad.mit.edu	37	2	202496815	202496815	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:202496815C>T	uc002uyh.1	-	8	613	c.512G>A	c.(511-513)GGC>GAC	p.G171D	ALS2CR4_uc002uyg.1_Missense_Mutation_p.G163D|ALS2CR4_uc010zho.1_5'UTR|ALS2CR4_uc010zhp.1_RNA	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	195						integral to membrane	protein binding				0						CTGGCTAATGCCAGTGGGTGC	0.398													43	73					0	0	1	0	0	
NBEAL1	65065	broad.mit.edu	37	2	204037566	204037566	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:204037566A>G	uc002uzt.3	+	40	6559	c.6226A>G	c.(6226-6228)ATG>GTG	p.M2076V	NBEAL1_uc002uzs.3_Missense_Mutation_p.M786V	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2076	BEACH.						binding			ovary(1)|skin(1)	2						CGCCAAAGCTATGAGAGAAAA	0.313													16	38					0	0	1	0	0	
NBEAL1	65065	broad.mit.edu	37	2	204073415	204073415	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:204073415C>T	uc002uzt.3	+	51	7808	c.7475C>T	c.(7474-7476)ACC>ATC	p.T2492I	NBEAL1_uc002uzs.3_Missense_Mutation_p.T1133I|NBEAL1_uc002uzu.2_5'UTR	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2492	WD 2.						binding			ovary(1)|skin(1)	2						TATGGACACACCAACGAGGTA	0.403													10	81					0	0	1	0	0	
PARD3B	117583	broad.mit.edu	37	2	205983664	205983664	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:205983664C>T	uc002var.1	+	7	907	c.700C>T	c.(700-702)CGA>TGA	p.R234*	PARD3B_uc010fub.1_Nonsense_Mutation_p.R234*|PARD3B_uc002vao.1_Nonsense_Mutation_p.R234*|PARD3B_uc002vap.1_Nonsense_Mutation_p.R234*|PARD3B_uc002vaq.1_Nonsense_Mutation_p.R234*	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	234	PDZ 1.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		ACTCTTCATCCGAGGCATTGA	0.338													16	36					0	0	1	0	0	
NDUFS1	4719	broad.mit.edu	37	2	207006782	207006782	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:207006782C>T	uc002vbe.2	-	12	1272	c.1145G>A	c.(1144-1146)CGT>CAT	p.R382H	NDUFS1_uc010ziq.1_Missense_Mutation_p.R396H|NDUFS1_uc010zir.1_Missense_Mutation_p.R346H|NDUFS1_uc010zis.1_Missense_Mutation_p.R325H|NDUFS1_uc010zit.1_Missense_Mutation_p.R271H|NDUFS1_uc010ziu.1_Missense_Mutation_p.R266H	NM_005006	NP_004997	P28331	NDUS1_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 1,	382					apoptosis|ATP metabolic process|mitochondrial electron transport, NADH to ubiquinone|reactive oxygen species metabolic process|regulation of mitochondrial membrane potential|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	2 iron, 2 sulfur cluster binding|4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NADH dehydrogenase (ubiquinone) activity|protein binding			ovary(1)	1					NADH(DB00157)	ATAATTGGAACGCAAATCTGT	0.338													3	48					0	0	1	0	0	
GPR1	2825	broad.mit.edu	37	2	207041587	207041587	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:207041587T>C	uc002vbl.3	-	3	771	c.385A>G	c.(385-387)ACA>GCA	p.T129A	GPR1_uc010fue.2_Missense_Mutation_p.T129A|GPR1_uc010fuf.2_Missense_Mutation_p.T129A	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	129	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		CTGATCACTGTCAGGAAAAAA	0.458													6	96					0	0	1	0	0	
ZDBF2	57683	broad.mit.edu	37	2	207171520	207171520	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:207171520G>A	uc002vbp.2	+	5	2518	c.2268G>A	c.(2266-2268)CCG>CCA	p.P756P		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	756							nucleic acid binding|zinc ion binding			ovary(3)	3						ATTCTGACCCGCCTCTTCTGT	0.418													21	217					0	0	1	0	0	
CRYGC	1420	broad.mit.edu	37	2	208994365	208994365	+	Missense_Mutation	SNP	C	T	T	rs145041511		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:208994365C>T	uc002vco.3	-	2	90	c.52G>A	c.(52-54)GAA>AAA	p.E18K		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	18	Beta/gamma crystallin 'Greek key' 1.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		GTGGTGGTTTCGTAGCTGCGG	0.522													58	143					0	0	1	0	0	
PIKFYVE	200576	broad.mit.edu	37	2	209138324	209138324	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:209138324C>T	uc002vcz.2	+	3	347	c.189C>T	c.(187-189)GGC>GGT	p.G63G	PIKFYVE_uc010fun.1_5'UTR|PIKFYVE_uc002vcy.1_Silent_p.G63G|PIKFYVE_uc002vcv.2_Silent_p.G63G|PIKFYVE_uc002vcw.2_Silent_p.G63G|PIKFYVE_uc002vcx.2_Silent_p.G63G	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	63					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CAGAAGGAGGCCAGGGAGAAC	0.473													7	64					0	0	1	0	0	
PIKFYVE	200576	broad.mit.edu	37	2	209209854	209209854	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:209209854G>A	uc002vcz.2	+	33	5205	c.5047G>A	c.(5047-5049)GCC>ACC	p.A1683T		NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1683					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						ATACCGAAATGCCTTAGAGGA	0.338													5	50					0	0	1	0	0	
C2orf67	151050	broad.mit.edu	37	2	210887888	210887888	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:210887888G>A	uc002vds.2	-	15	2957	c.2749C>T	c.(2749-2751)CGA>TGA	p.R917*	C2orf67_uc002vdt.2_Nonsense_Mutation_p.R875*	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	917										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		AAAGCCCGTCGTTCCCACCAC	0.378													10	25					0	0	1	0	0	
MYL1	4632	broad.mit.edu	37	2	211179636	211179636	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:211179636T>G	uc002vec.2	-	1	260	c.131A>C	c.(130-132)AAG>ACG	p.K44T		NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	44					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		TTTAGTTACCTTAATGGCAGA	0.318													25	153					0	0	1	0	0	
CPS1	1373	broad.mit.edu	37	2	211442163	211442163	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:211442163C>T	uc002vee.3	+	4	532	c.400C>T	c.(400-402)CTG>TTG	p.L134L	CPS1_uc010fur.2_Silent_p.L140L	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	134	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TTTGCTGGTGCTGGATTATAG	0.383													37	100					0	0	1	0	0	
SMARCAL1	50485	broad.mit.edu	37	2	217285159	217285159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:217285159C>T	uc002vgc.3	+	5	1330	c.1000C>T	c.(1000-1002)CGA>TGA	p.R334*	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Nonsense_Mutation_p.R334*|SMARCAL1_uc010fvg.2_Nonsense_Mutation_p.R334*	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	334					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		TGTCAAAGGGCGATGCATGCT	0.527									Schimke_Immuno-Osseous_Dysplasia				9	54					0	0	1	0	0	
CXCR2	3579	broad.mit.edu	37	2	219000083	219000083	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:219000083G>A	uc002vgz.1	+	4	784	c.559G>A	c.(559-561)GTC>ATC	p.V187I	CXCR2_uc002vha.1_Missense_Mutation_p.V187I|CXCR2_uc002vhb.1_Missense_Mutation_p.V187I	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	187	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						CCGAAGGACCGTCTACTCATC	0.527													10	77					0	0	1	0	0	
TTLL4	9654	broad.mit.edu	37	2	219614016	219614016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:219614016C>T	uc002viy.2	+	14	3011	c.2641C>T	c.(2641-2643)CGA>TGA	p.R881*	TTLL4_uc010zkl.1_Nonsense_Mutation_p.R716*|TTLL4_uc010fvx.2_Nonsense_Mutation_p.R817*|TTLL4_uc010zkm.1_Nonsense_Mutation_p.R84*	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	881	TTL.				protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		GATGTATGTGCGACGGCCCTA	0.527													20	76					0	0	1	0	0	
TTLL4	9654	broad.mit.edu	37	2	219617636	219617636	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:219617636C>T	uc002viy.2	+	17	3497	c.3127C>T	c.(3127-3129)CGA>TGA	p.R1043*	TTLL4_uc010zkl.1_Nonsense_Mutation_p.R878*|TTLL4_uc010fvx.2_Nonsense_Mutation_p.R979*|TTLL4_uc010zkm.1_Nonsense_Mutation_p.R246*	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1043					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		TGAGCAGCCACGATATTTCAA	0.458													22	82					0	0	1	0	0	
CYP27A1	1593	broad.mit.edu	37	2	219679346	219679346	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:219679346C>T	uc002viz.3	+	8	1776	c.1342C>T	c.(1342-1344)CGC>TGC	p.R448C		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	448					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	CCAGCCCCACCGCTGGCTGAG	0.607													3	54					0	0	1	0	0	
SPEG	10290	broad.mit.edu	37	2	220347929	220347929	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:220347929G>A	uc010fwg.2	+	30	5744	c.5744G>A	c.(5743-5745)AGT>AAT	p.S1915N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1915					muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCACCCCCCAGTGGGGGGCTC	0.672													3	15					0	0	1	0	0	
SPEG	10290	broad.mit.edu	37	2	220355154	220355154	+	Missense_Mutation	SNP	C	T	T	rs77554911	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:220355154C>T	uc010fwg.2	+	37	8945	c.8945C>T	c.(8944-8946)GCG>GTG	p.A2982V		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2982	Protein kinase 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GTTGTGCGAGCGTGCCGGGAG	0.662													19	43					0	0	1	0	0	
GMPPA	29926	broad.mit.edu	37	2	220370455	220370455	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:220370455C>T	uc002vlr.2	+	10	940	c.872C>T	c.(871-873)CCG>CTG	p.P291L	GMPPA_uc002vls.2_Missense_Mutation_p.P291L|GMPPA_uc002vlt.2_Missense_Mutation_p.P344L|GMPPA_uc002vlu.2_Missense_Mutation_p.P344L|GMPPA_uc002vlv.2_Missense_Mutation_p.P291L|GMPPA_uc002vlw.2_RNA|GMPPA_uc002vlx.2_Missense_Mutation_p.P291L	NM_013335	NP_037467	Q96IJ6	GMPPA_HUMAN	GDP-mannose pyrophosphorylase A	291					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0		Renal(207;0.0183)		Epithelial(149;3.82e-10)|all cancers(144;6.25e-08)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00807)|READ - Rectum adenocarcinoma(5;0.148)		TACATCCACCCGACCGCCAAG	0.602													15	45					0	0	1	0	0	
OBSL1	23363	broad.mit.edu	37	2	220432656	220432656	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:220432656C>T	uc010fwk.2	-	3	1375	c.1318G>A	c.(1318-1320)GTC>ATC	p.V440I	OBSL1_uc010fwl.1_5'Flank|OBSL1_uc002vmi.2_Missense_Mutation_p.V440I|OBSL1_uc002vmj.2_Missense_Mutation_p.V27I	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	440					cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CCTTCCAGGACGTCGAGCTTC	0.632													12	22					0	0	1	0	0	
KCNE4	23704	broad.mit.edu	37	2	223917920	223917920	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:223917920C>T	uc002vnl.3	+	2	526	c.372C>T	c.(370-372)AGC>AGT	p.S124S		NM_080671	NP_542402	Q8WWG9	KCNE4_HUMAN	potassium voltage-gated channel, Isk-related	124	Cytoplasmic (Potential).					integral to membrane	voltage-gated potassium channel activity			ovary(1)	1		Renal(207;0.0183)|Lung NSC(271;0.137)|all_lung(227;0.175)		Epithelial(121;4.48e-11)|all cancers(144;2.88e-08)|Lung(261;0.00688)|LUSC - Lung squamous cell carcinoma(224;0.008)		AAGGGGACAGCGTGAGCTCCG	0.662													8	47					0	0	1	0	0	
CUL3	8452	broad.mit.edu	37	2	225367719	225367719	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:225367719G>A	uc002vny.2	-	10	1832	c.1448C>T	c.(1447-1449)ACG>ATG	p.T483M	CUL3_uc010zls.1_Missense_Mutation_p.T417M|CUL3_uc010fwy.1_Missense_Mutation_p.T489M|CUL3_uc002vnz.1_5'Flank	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	483					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TTCATCCATCGTTGTGTTTGA	0.363													87	223					0	0	1	0	0	
IRS1	3667	broad.mit.edu	37	2	227663053	227663053	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:227663053G>A	uc002voh.3	-	1	454	c.402C>T	c.(400-402)GGC>GGT	p.G134G		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	134	Poly-Gly.|Mediates interaction with PHIP (By similarity).			G -> GG (in Ref. 2; AAB21608).	fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CGCTGCAGCTGCCCCCACCAC	0.667											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	41					0	0	1	0	0	
COL4A3	1285	broad.mit.edu	37	2	228175562	228175562	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:228175562G>A	uc002vom.1	+	51	4988	c.4826G>A	c.(4825-4827)CGA>CAA	p.R1609Q	COL4A3_uc002von.1_Intron|COL4A3_uc002voo.1_Intron|COL4A3_uc002vop.1_Intron|uc002voq.1_Intron|uc002vor.1_Intron|COL4A3_uc010fxf.1_Missense_Mutation_p.R25Q	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	1609	Collagen IV NC1.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GAAGAATTCCGAGCCAGCCCA	0.463													18	67					0	0	1	0	0	
SP110	3431	broad.mit.edu	37	2	231042313	231042313	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:231042313C>T	uc002vqh.3	-	14	1771	c.1531G>A	c.(1531-1533)GCA>ACA	p.A511T	SP110_uc002vqg.3_Missense_Mutation_p.A511T|SP110_uc002vqi.3_Missense_Mutation_p.A511T|SP110_uc010fxk.2_Missense_Mutation_p.A509T|SP110_uc010fxj.2_Missense_Mutation_p.A154T	NM_004509	NP_004500	Q9HB58	SP110_HUMAN	SP110 nuclear body protein isoform a	511	SAND.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|signal transducer activity|zinc ion binding			ovary(2)|breast(2)	4		Renal(207;0.0112)|all_lung(227;0.0223)|Lung NSC(271;0.0983)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.169)		Epithelial(121;2.61e-12)|all cancers(144;6.39e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.0097)		CAGTTCTTTGCGTTCCTTCCT	0.428													97	214					0	0	1	0	0	
HDAC4	9759	broad.mit.edu	37	2	240056289	240056289	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:240056289A>G	uc002vyk.3	-	10	1821	c.1029T>C	c.(1027-1029)CTT>CTC	p.L343L	HDAC4_uc010fyz.1_Silent_p.L338L|HDAC4_uc010zoa.1_Silent_p.L338L|HDAC4_uc010fza.2_Silent_p.L343L|HDAC4_uc010fyy.2_Silent_p.L295L|HDAC4_uc010znz.1_Silent_p.L226L|HDAC4_uc010fzb.1_RNA	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	343					B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		TGTAGAGGGGAAGTGGAGCGG	0.627													15	59					0	0	1	0	0	
ANKMY1	51281	broad.mit.edu	37	2	241463640	241463640	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:241463640G>A	uc002vyz.1	-	7	1456	c.1227C>T	c.(1225-1227)CAC>CAT	p.H409H	ANKMY1_uc002vza.1_Silent_p.H268H|ANKMY1_uc010fzd.1_Silent_p.H498H|ANKMY1_uc002vzb.1_Intron|ANKMY1_uc002vzc.1_Silent_p.H268H|ANKMY1_uc002vzd.1_Silent_p.H268H|ANKMY1_uc010fze.1_Silent_p.H78H|ANKMY1_uc002vze.2_Silent_p.H170H	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	409							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		GGCCGCCCTCGTGGCTGCCTG	0.637													16	38					0	0	1	0	0	
ANO7	50636	broad.mit.edu	37	2	242142788	242142788	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:242142788G>A	uc002wax.2	+	9	1029	c.926G>A	c.(925-927)CGC>CAC	p.R309H		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	309	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CAGGCTCCACGCCTCAACCAG	0.682													3	8					0	0	1	0	0	
THAP4	51078	broad.mit.edu	37	2	242572343	242572343	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:242572343G>A	uc002wbt.2	-	2	1452	c.1229C>T	c.(1228-1230)TCG>TTG	p.S410L		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	410							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		GCGGCTGGGCGACAGCAGGCT	0.632													8	18					0	0	1	0	0	
SIRPA	140885	broad.mit.edu	37	20	1896067	1896067	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:1896067T>C	uc002wfq.2	+	3	762	c.402T>C	c.(400-402)TTT>TTC	p.F134F	SIRPA_uc010zps.1_Silent_p.F114F|SIRPA_uc002wfr.2_Silent_p.F134F|SIRPA_uc002wfs.2_Silent_p.F134F|SIRPA_uc002wft.2_Silent_p.F134F	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	134	Ig-like V-type.|Extracellular (Potential).		F -> L.		blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		ACGTGGAGTTTAAGTCTGGAG	0.537													6	133					0	0	1	0	0	
TGM3	7053	broad.mit.edu	37	20	2321186	2321186	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:2321186C>A	uc002wfx.3	+	13	2138	c.2041C>A	c.(2041-2043)CCT>ACT	p.P681T		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	681					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CAACAAGTTCCCTGCAATCAA	0.592													5	88					0.000602214	0.000618842	1	1	0	
TGM6	343641	broad.mit.edu	37	20	2378638	2378638	+	Silent	SNP	C	T	T	rs111415879		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:2378638C>T	uc002wfy.1	+	5	679	c.618C>T	c.(616-618)ACC>ACT	p.T206T	TGM6_uc010gal.1_Silent_p.T206T	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	206					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	ACCCAGCCACCGACGTGTCCT	0.582													13	70					0	0	1	0	0	
GNRH2	2797	broad.mit.edu	37	20	3025167	3025167	+	Missense_Mutation	SNP	G	A	A	rs61729221		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:3025167G>A	uc002whr.1	+	2	158	c.107G>A	c.(106-108)CGA>CAA	p.R36Q	GNRH2_uc002whp.1_Missense_Mutation_p.R36Q|GNRH2_uc002whq.1_Missense_Mutation_p.R36Q|GNRH2_uc010gau.1_Missense_Mutation_p.R36Q|MRPS26_uc002whs.2_5'Flank	NM_001501	NP_001492	O43555	GON2_HUMAN	gonadotropin-releasing hormone 2 isoform a	36					multicellular organismal development|signal transduction	extracellular region|soluble fraction	hormone activity				0						GGAGGAAAGCGAGCCCTCAGC	0.657													4	26					0	0	1	0	0	
FASTKD5	60493	broad.mit.edu	37	20	3128087	3128087	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:3128087A>G	uc002whz.2	-	2	1941	c.1630T>C	c.(1630-1632)TTG>CTG	p.L544L	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	544					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TACCACAGCAATTCAGACCCC	0.453													3	46					0	0	1	0	0	
ADAM33	80332	broad.mit.edu	37	20	3653476	3653476	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:3653476G>A	uc002wit.2	-	12	1290	c.1203C>T	c.(1201-1203)GGC>GGT	p.G401G	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Silent_p.G401G|ADAM33_uc002wis.2_5'UTR|ADAM33_uc002wiu.2_Silent_p.G401G|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_3'UTR|ADAM33_uc010zqh.1_3'UTR	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	401	Extracellular (Potential).|Peptidase M12B.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GGCAAGCGCCGCCCCCCTTGC	0.731													9	10					0	0	1	0	0	
SIGLEC1	6614	broad.mit.edu	37	20	3669223	3669223	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:3669223G>A	uc002wja.2	-	21	5114	c.5114C>T	c.(5113-5115)GCC>GTC	p.A1705V	SIGLEC1_uc002wjb.1_3'UTR|SIGLEC1_uc002wiz.3_Missense_Mutation_p.P1681S	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	1705	Cytoplasmic (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						CAGGGGTGGGGCACAGGTTGA	0.587													3	12					0	0	1	0	0	
CDC25B	994	broad.mit.edu	37	20	3782662	3782662	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:3782662G>A	uc002wjn.2	+	10	1791	c.1013G>A	c.(1012-1014)CGG>CAG	p.R338Q	CDC25B_uc010zqk.1_Missense_Mutation_p.R274Q|CDC25B_uc010zql.1_Missense_Mutation_p.R260Q|CDC25B_uc010zqm.1_Missense_Mutation_p.R247Q|CDC25B_uc002wjl.2_Missense_Mutation_p.R226Q|CDC25B_uc002wjm.2_Missense_Mutation_p.R226Q|CDC25B_uc002wjo.2_Missense_Mutation_p.R324Q|CDC25B_uc002wjp.2_Missense_Mutation_p.R297Q|CDC25B_uc002wjq.2_Missense_Mutation_p.R138Q|CDC25B_uc010gbc.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	338					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						AGGCTGGAGCGGCCCCAGGAC	0.657													3	5					0	0	1	0	0	
BMP2	650	broad.mit.edu	37	20	6759451	6759451	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:6759451C>T	uc002wmu.1	+	3	1691	c.906C>T	c.(904-906)TAC>TAT	p.Y302Y		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	302					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	ACCCTTTGTACGTGGACTTCA	0.512													30	46					0	0	1	0	0	
HAO1	54363	broad.mit.edu	37	20	7886818	7886818	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:7886818G>A	uc002wmw.1	-	4	728	c.704C>T	c.(703-705)GCA>GTA	p.A235V	HAO1_uc010gbu.2_Missense_Mutation_p.A235V	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	235	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						AATGCCCTTTGCAACAATTGG	0.383													48	117					0	0	1	0	0	
KIF16B	55614	broad.mit.edu	37	20	16360726	16360726	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:16360726G>A	uc002wpg.1	-	19	2079	c.1921C>T	c.(1921-1923)CGC>TGC	p.R641C	KIF16B_uc002wpe.1_Missense_Mutation_p.R23C|KIF16B_uc002wpf.1_Missense_Mutation_p.R23C|KIF16B_uc010gch.1_Missense_Mutation_p.R641C|KIF16B_uc010gci.1_Missense_Mutation_p.R641C|KIF16B_uc010gcj.1_Missense_Mutation_p.R652C	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	641	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GTCTCCTTGCGCTGGGTCTCC	0.507													31	68					0	0	1	0	0	
ZNF133	7692	broad.mit.edu	37	20	18295989	18295989	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:18295989C>T	uc010gcq.2	+	5	799	c.494C>T	c.(493-495)GCG>GTG	p.A165V	ZNF133_uc010zrv.1_Missense_Mutation_p.A168V|ZNF133_uc010zrw.1_Missense_Mutation_p.A102V|ZNF133_uc010gcr.2_Missense_Mutation_p.A165V|ZNF133_uc010zrx.1_Missense_Mutation_p.A70V|ZNF133_uc002wql.3_Missense_Mutation_p.A164V|ZNF133_uc010gcs.2_Missense_Mutation_p.A164V|ZNF133_uc010zry.1_Missense_Mutation_p.A70V|ZNF133_uc002wqm.2_Missense_Mutation_p.A165V	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	165						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						ACTCTGGGAGCGTTCTCCAGG	0.587													11	121					0	0	1	0	0	
SLC24A3	57419	broad.mit.edu	37	20	19496186	19496186	+	Missense_Mutation	SNP	C	T	T	rs144636987		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:19496186C>T	uc002wrl.2	+	3	523	c.326C>T	c.(325-327)GCG>GTG	p.A109V		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	109	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						AGACAAGGTGCGGTGGTCCTC	0.542													9	144					0	0	1	0	0	
DNMT3B	1789	broad.mit.edu	37	20	31387092	31387092	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:31387092C>T	uc002wyc.2	+	16	2038	c.1717C>T	c.(1717-1719)CGG>TGG	p.R573W	DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.R553W|DNMT3B_uc002wye.2_Missense_Mutation_p.R553W|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.R511W|DNMT3B_uc010zua.1_Missense_Mutation_p.R477W|DNMT3B_uc002wyf.2_Missense_Mutation_p.R565W|DNMT3B_uc002wyg.2_Missense_Mutation_p.R272W|DNMT3B_uc010geg.2_5'Flank|DNMT3B_uc010geh.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	573					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						AGCCCGAAGGCGGCCCATTCG	0.582													8	31					0	0	1	0	0	
ZNF341	84905	broad.mit.edu	37	20	32341075	32341075	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:32341075C>A	uc002wzy.2	+	5	607	c.587C>A	c.(586-588)CCT>CAT	p.P196H	ZNF341_uc002wzx.2_Missense_Mutation_p.P196H|ZNF341_uc010geq.2_Missense_Mutation_p.P106H|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ccacctcagcctccaccacct	0.438													4	13					0.014758	0.0149413	1	1	0	
CEP250	11190	broad.mit.edu	37	20	34055233	34055233	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:34055233C>A	uc002xcm.2	+	10	1375	c.704C>A	c.(703-705)TCT>TAT	p.S235Y	CEP250_uc010zve.1_Translation_Start_Site|CEP250_uc010zvd.1_RNA|CEP250_uc002xco.2_Missense_Mutation_p.S42Y	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	235					centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCCAACGGATCTGGAAGAATG	0.562													15	121					4.7546e-09	5.08107e-09	1	1	0	
RBM39	9584	broad.mit.edu	37	20	34312604	34312604	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:34312604C>A	uc002xeb.2	-	8	919	c.575G>T	c.(574-576)CGT>CTT	p.R192L	RBM39_uc002xdz.2_Missense_Mutation_p.R168L|RBM39_uc002xea.2_Missense_Mutation_p.R35L|RBM39_uc010gfn.2_Missense_Mutation_p.R35L|RBM39_uc010zvm.1_Missense_Mutation_p.R170L|RBM39_uc002xeg.2_Missense_Mutation_p.R170L|RBM39_uc002xec.2_Missense_Mutation_p.R192L|RBM39_uc002xed.2_5'UTR|RBM39_uc002xee.2_Missense_Mutation_p.R35L|RBM39_uc002xef.2_Missense_Mutation_p.R35L|RBM39_uc010zvn.1_Missense_Mutation_p.R35L	NM_184234	NP_909122	Q14498	RBM39_HUMAN	RNA binding motif protein 39 isoform a	192	RRM 1.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	centrosome|nuclear speck	nucleotide binding|protein binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_epithelial(2;0.00295)|Lung NSC(9;0.00453)|Breast(12;0.00544)|all_lung(11;0.00676)					TCCTTTGGAACGTCTTGAATT	0.398													6	100					0.000157383	0.000163001	1	1	0	
C20orf132	140699	broad.mit.edu	37	20	35749348	35749348	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:35749348G>T	uc010zvu.1	-	18	2189	c.2098C>A	c.(2098-2100)CTG>ATG	p.L700M	C20orf132_uc002xgk.2_Missense_Mutation_p.L322M	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				TTTCCTCCCAGGAGAGCCCAT	0.453													5	42					0.00198382	0.00202401	1	1	0	
PLCG1	5335	broad.mit.edu	37	20	39791298	39791298	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:39791298G>A	uc002xjp.1	+	6	735	c.614G>A	c.(613-615)AGC>AAC	p.S205N	PLCG1_uc002xjo.1_Missense_Mutation_p.S205N|PLCG1_uc010zwe.1_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	205					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				GAGCAGCGCAGCGGGGACATC	0.632													4	50					0	0	1	0	0	
CHD6	84181	broad.mit.edu	37	20	40081533	40081533	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:40081533T>C	uc002xka.1	-	21	3348	c.3170A>G	c.(3169-3171)TAC>TGC	p.Y1057C		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1057					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AAACGAGTTGTAGTGTTTGGT	0.498													4	54					0	0	1	0	0	
TTPAL	79183	broad.mit.edu	37	20	43115284	43115284	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43115284C>T	uc002xmc.1	+	5	812	c.688C>T	c.(688-690)CGA>TGA	p.R230*	TTPAL_uc002xmd.1_Nonsense_Mutation_p.R230*|TTPAL_uc010ggr.1_Nonsense_Mutation_p.R43*	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	230	CRAL-TRIO.					intracellular	transporter activity			breast(1)	1						GAATGAACCTCGAATATTTAA	0.388													4	75					0	0	1	0	0	
SERINC3	10955	broad.mit.edu	37	20	43141456	43141456	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43141456C>T	uc002xme.2	-	3	515	c.381G>A	c.(379-381)GCG>GCA	p.A127A	SERINC3_uc002xmf.1_Silent_p.A127A|SERINC3_uc010ggs.1_Silent_p.A120A|SERINC3_uc010zwp.1_Silent_p.A72A	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	127	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			TGTGTACTGCCGCTCGGAGAT	0.388													7	34					0	0	1	0	0	
PKIG	11142	broad.mit.edu	37	20	43243338	43243338	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43243338C>T	uc002xmg.2	+	5	670	c.141C>T	c.(139-141)CTC>CTT	p.L47L	PKIG_uc002xmh.2_Silent_p.L47L|PKIG_uc002xmi.2_Silent_p.L47L	NM_181805	NP_861521	Q9Y2B9	IPKG_HUMAN	cAMP-dependent protein kinase inhibitor gamma	47							cAMP-dependent protein kinase inhibitor activity|protein binding				0		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.001)|COAD - Colon adenocarcinoma(18;0.00189)			AGCTGGCACTCGAGGGGGCAG	0.647													15	32					0	0	1	0	0	
ADA	100	broad.mit.edu	37	20	43249692	43249692	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43249692G>A	uc002xmj.2	-	10	1070	c.942C>T	c.(940-942)GAC>GAT	p.D314D	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	314					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	TAAAGCCCATGTCCCGTTTGG	0.512									Adenosine_Deaminase_Deficiency				10	108					0	0	1	0	0	
WISP2	8839	broad.mit.edu	37	20	43353454	43353454	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43353454G>A	uc002xmn.2	+	4	706	c.353G>A	c.(352-354)AGC>AAC	p.S118N	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Missense_Mutation_p.S118N|WISP2_uc002xmq.2_Intron	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	118	VWFC.				cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CCCCACTGCAGCATCCGCTGC	0.687													3	21					0	0	1	0	0	
MATN4	8785	broad.mit.edu	37	20	43926908	43926908	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:43926908C>T	uc002xnn.2	-	7	1515	c.1328G>A	c.(1327-1329)CGG>CAG	p.R443Q	MATN4_uc002xno.2_Missense_Mutation_p.R402Q|MATN4_uc002xnp.2_Missense_Mutation_p.R361Q|MATN4_uc010zwr.1_Missense_Mutation_p.R391Q|MATN4_uc002xnr.1_Missense_Mutation_p.R443Q	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	484	VWFA 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				GGCACGGGGCCGTGCACCCTG	0.667													6	71					0	0	1	0	0	
SLC9A8	23315	broad.mit.edu	37	20	48431697	48431697	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:48431697T>C	uc002xuv.1	+	2	389	c.179T>C	c.(178-180)ATG>ACG	p.M60T	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010zyj.1_Missense_Mutation_p.M60T|SLC9A8_uc010zyk.1_Missense_Mutation_p.M60T|SLC9A8_uc010zyl.1_Missense_Mutation_p.M60T|SLC9A8_uc010gib.1_Missense_Mutation_p.M60T	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	60	Helical; (Potential).					Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			TCCAGCGGCATGACCATTTTC	0.582													12	108					0	0	1	0	0	
CYP24A1	1591	broad.mit.edu	37	20	52789528	52789528	+	Silent	SNP	G	A	A	rs114334215	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:52789528G>A	uc002xwv.2	-	2	767	c.369C>T	c.(367-369)AGC>AGT	p.S123S	CYP24A1_uc002xwu.1_5'Flank|CYP24A1_uc002xww.2_Silent_p.S123S	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	123					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	GCGGGTACGCGCTCTCGGTGC	0.587													9	85					0	0	1	0	0	
ZBP1	81030	broad.mit.edu	37	20	56191408	56191408	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:56191408G>A	uc002xyo.2	-	2	432	c.151C>T	c.(151-153)CGA>TGA	p.R51*	ZBP1_uc010gjm.2_Nonsense_Mutation_p.R51*|ZBP1_uc002xyp.2_Intron|ZBP1_uc010zzn.1_Nonsense_Mutation_p.R51*	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	51	DRADA 1.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			TTTTTCATTCGGTAGAGGACT	0.582													10	108					0	0	1	0	0	
RAB22A	57403	broad.mit.edu	37	20	56918855	56918855	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:56918855A>G	uc002xyz.2	+	3	460	c.198A>G	c.(196-198)CGA>CGG	p.R66R		NM_020673	NP_065724	Q9UL26	RB22A_HUMAN	RAS-related protein RAB-22A	66					endocytosis|endosome organization|protein transport|small GTPase mediated signal transduction	early endosome|endosome membrane|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_epithelial(3;5.09e-14)|Lung NSC(12;0.000122)|all_lung(29;0.00042)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;4.73e-08)|all cancers(14;4.83e-07)			GACAAGAACGAGTAAGTCACT	0.398													4	19					0	0	1	0	0	
GNAS	2778	broad.mit.edu	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	T	T	rs11554273		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:57484420C>T	uc002xzw.2	+	8	2815	c.2530C>T	c.(2530-2532)CGT>TGT	p.R844C	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.R142C|GNAS_uc002xzx.2_Missense_Mutation_p.R142C|GNAS_uc010gjr.2_Missense_Mutation_p.R92C|GNAS_uc002xzy.2_Missense_Mutation_p.R127C|GNAS_uc002yaa.2_Missense_Mutation_p.R187C|GNAS_uc010zzt.1_Missense_Mutation_p.R202C|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Missense_Mutation_p.R92C|GNAS_uc002yae.2_Missense_Mutation_p.R126C	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	201	GTP (By similarity).		R -> L (in non-MAS endocrine tumors).|R -> S (in AIMAH, pituitary tumor and polyostotic fibrous dysplasia).|R -> H (in MAS, somatotrophinoma and AIMAH).|R -> G (in MAS).		activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity	p.R201C(182)|p.R201S(5)		pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GCTTCGCTGCCGTGTCCTGAC	0.428			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	44					0	0	1	0	0	
LAMA5	3911	broad.mit.edu	37	20	60902996	60902996	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:60902996G>A	uc002ycq.2	-	36	4790	c.4723C>T	c.(4723-4725)CGC>TGC	p.R1575C		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1575	Laminin EGF-like 14.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCACAGGGGCGGCAGCGGGGG	0.682													18	50					0	0	1	0	0	
MIR124-3	406909	broad.mit.edu	37	20	61809912	61809912	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:61809912G>A	hsa-mir-124-3|MI0000445	+			c.61G>A			uc002yeg.1_RNA																	0						ATTAAGGCACGCGGTGAATGC	0.677													6	46					0	0	1	0	0	
ARFGAP1	55738	broad.mit.edu	37	20	61908657	61908657	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:61908657G>A	uc002yem.2	+	5	555	c.443G>A	c.(442-444)CGA>CAA	p.R148Q	ARFGAP1_uc011aas.1_Missense_Mutation_p.R95Q|ARFGAP1_uc011aat.1_Intron|ARFGAP1_uc002yel.2_Missense_Mutation_p.R148Q|ARFGAP1_uc002yen.2_Missense_Mutation_p.R148Q	NM_018209	NP_060679	Q8N6T3	ARFG1_HUMAN	ADP-ribosylation factor GTPase activating	148					COPI coating of Golgi vesicle|protein transport|regulation of ARF GTPase activity|retrograde vesicle-mediated transport, Golgi to ER	cytosol|Golgi-associated vesicle membrane	ARF GTPase activator activity|zinc ion binding			pancreas(1)	1	all_cancers(38;1.59e-09)					ATGGTGCACCGGTAGCTGCTC	0.577													8	14					0	0	1	0	0	
COL20A1	57642	broad.mit.edu	37	20	61938964	61938964	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:61938964G>A	uc011aau.1	+	6	719	c.619G>A	c.(619-621)GCA>ACA	p.A207T	COL20A1_uc011aav.1_Missense_Mutation_p.A28T	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	207	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CAGTGTCATCGCACCCTTTGA	0.652													5	55					0	0	1	0	0	
COL20A1	57642	broad.mit.edu	37	20	61944569	61944569	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:61944569G>A	uc011aau.1	+	17	2277	c.2177G>A	c.(2176-2178)CGC>CAC	p.R726H	COL20A1_uc011aav.1_Missense_Mutation_p.R547H	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	726	Fibronectin type-III 5.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					GACGGGGCCCGCAGTGACCCT	0.657													10	36					0	0	1	0	0	
KCNQ2	3785	broad.mit.edu	37	20	62046276	62046276	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:62046276G>A	uc002yey.1	-	13	1682	c.1505C>T	c.(1504-1506)GCG>GTG	p.A502V	KCNQ2_uc002yez.1_Missense_Mutation_p.A472V|KCNQ2_uc002yfa.1_Missense_Mutation_p.A484V|KCNQ2_uc002yfb.1_Missense_Mutation_p.A474V	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	502	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CTGCCGTGACGCGGCACCCTT	0.672													40	82					0	0	1	0	0	
EEF1A2	1917	broad.mit.edu	37	20	62126389	62126389	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:62126389A>G	uc002yfd.1	-	3	491	c.390T>C	c.(388-390)AAT>AAC	p.N130N	EEF1A2_uc002yfe.1_Silent_p.N130N|EEF1A2_uc010gkg.1_Silent_p.N130N	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	130						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			GCGTCTGCCCATTCTTGGAGA	0.677													5	136					0	0	1	0	0	
PRIC285	85441	broad.mit.edu	37	20	62198376	62198376	+	Missense_Mutation	SNP	G	T	T	rs138788557		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:62198376G>T	uc002yfm.2	-	7	3227	c.2335C>A	c.(2335-2337)CCG>ACG	p.P779T	PRIC285_uc002yfl.1_Missense_Mutation_p.P210T	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	779					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			AACATGAGCGGGTAGTGCCGG	0.647													30	71					2.65835e-16	2.90063e-16	1	1	0	
ZBTB46	140685	broad.mit.edu	37	20	62421541	62421541	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:62421541G>A	uc002ygv.1	-	2	771	c.570C>T	c.(568-570)CAC>CAT	p.H190H	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					TCCCTCCGTCGTGACAGCTGG	0.622													13	17					0	0	1	0	0	
NPBWR2	2832	broad.mit.edu	37	20	62737451	62737451	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:62737451C>T	uc011abt.1	-	1	734	c.734G>A	c.(733-735)CGC>CAC	p.R245H		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	245	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					GGCTCCAGAGCGGAGCCGCAC	0.667													4	9					0	0	1	0	0	
TMPRSS15	5651	broad.mit.edu	37	21	19653413	19653413	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:19653413C>T	uc002ykw.2	-	22	2643	c.2612G>A	c.(2611-2613)CGA>CAA	p.R871Q		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	871	Extracellular (Potential).|Peptidase S1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GTCCTTTCTTCGCCTATTGTA	0.363													17	166					0	0	1	0	0	
ADAMTS1	9510	broad.mit.edu	37	21	28210023	28210023	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:28210023C>T	uc002ymf.2	-	9	3234	c.2779G>A	c.(2779-2781)GGT>AGT	p.G927S		NM_006988	NP_008919	Q9UHI8	ATS1_HUMAN	ADAM metallopeptidase with thrombospondin type 1	927	TSP type-1 3.				integrin-mediated signaling pathway|negative regulation of cell proliferation|proteolysis		heparin binding|zinc ion binding			lung(3)|large_intestine(2)|central_nervous_system(1)	6		Breast(209;0.000962)		Lung(58;0.215)		TTTTTGTAACCCTTCCCACAG	0.483													6	92					0	0	1	0	0	
RNF160	26046	broad.mit.edu	37	21	30359239	30359239	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:30359239C>T	uc002ymr.2	-	2	210	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	RNF160_uc010gll.1_RNA	NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	20							ligase activity|zinc ion binding				0						TTCTGCAGCTCGGCCACTGTT	0.433													14	36					0	0	1	0	0	
KRTAP24-1	643803	broad.mit.edu	37	21	31654858	31654858	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:31654858G>A	uc002ynv.2	-	1	419	c.393C>T	c.(391-393)TGC>TGT	p.C131C		NM_001085455	NP_001078924	Q3LI83	KR241_HUMAN	keratin associated protein 24-1	131						keratin filament	structural molecule activity				0						TGGGTATGTGGCAATTGCATA	0.363													7	83					0	0	1	0	0	
KRTAP19-6	337973	broad.mit.edu	37	21	31914005	31914005	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:31914005C>T	uc002yok.1	-	1	177	c.148G>A	c.(148-150)GAA>AAA	p.E50K		NM_181612	NP_853643	Q3LI70	KR196_HUMAN	keratin associated protein 19-6	50						intermediate filament					0						CCATATCCTTCACGGCATGAT	0.488													9	183					0	0	1	0	0	
TIAM1	7074	broad.mit.edu	37	21	32639198	32639198	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:32639198G>A	uc002yow.1	-	5	563	c.91C>T	c.(91-93)CGC>TGC	p.R31C	TIAM1_uc011adk.1_Missense_Mutation_p.R31C|TIAM1_uc011adl.1_Missense_Mutation_p.R31C|TIAM1_uc002yox.1_Intron	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	31					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TGCGAGAGGCGCAGGGAGCGG	0.582													4	29					0	0	1	0	0	
C21orf59	56683	broad.mit.edu	37	21	33982197	33982197	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:33982197G>A	uc002yqc.2	-	2	371	c.258C>T	c.(256-258)AGC>AGT	p.S86S	C21orf59_uc002ypx.1_5'Flank|C21orf59_uc002ypy.1_Silent_p.S86S|C21orf59_uc002ypz.1_Silent_p.S86S|C21orf59_uc010glx.2_Missense_Mutation_p.A10V|C21orf59_uc002yqd.2_Silent_p.S86S|C21orf59_uc002yqb.3_Silent_p.S86S|C21orf59_uc011adr.1_Intron	NM_021254	NP_067077	P57076	CU059_HUMAN	hypothetical protein LOC56683	86						cytosol|nucleus					0						CTGCACCTCCGCTGGGTACGC	0.418													19	36					0	0	1	0	0	
DONSON	29980	broad.mit.edu	37	21	34950737	34950737	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:34950737T>C	uc002ysk.2	-	10	1644	c.1577A>G	c.(1576-1578)AAG>AGG	p.K526R	DONSON_uc002ysi.1_Missense_Mutation_p.K286R|DONSON_uc002ysj.2_Missense_Mutation_p.K159R|DONSON_uc002ysl.2_Missense_Mutation_p.K159R|DONSON_uc010gme.2_Missense_Mutation_p.K499R|DONSON_uc002ysm.2_Missense_Mutation_p.K526R	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	526					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						AGTAAGCTCCTTATGAACAAC	0.388													3	65					0	0	1	0	0	
PSMG1	8624	broad.mit.edu	37	21	40550511	40550511	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:40550511G>A	uc002yxi.2	-	5	648	c.519C>T	c.(517-519)ACC>ACT	p.T173T	PSMG1_uc002yxj.2_Silent_p.T152T|PSMG1_uc010gob.2_Silent_p.T86T	NM_003720	NP_003711	O95456	PSMG1_HUMAN	Down syndrome critical region protein 2 isoform	173					proteasome assembly	endoplasmic reticulum	protein binding				0		Prostate(19;8.44e-08)				TTTTATAATCGGTAACATGTC	0.368													7	83					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41414322	41414322	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:41414322C>T	uc002yyq.1	-	32	6114	c.5662G>A	c.(5662-5664)GCA>ACA	p.A1888T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1888	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTTGGAACTGCCATATTCATT	0.572													12	50					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41496241	41496241	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:41496241C>T	uc002yyq.1	-	20	4029	c.3577G>A	c.(3577-3579)GCG>ACG	p.A1193T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1193	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTCACACCCGCGGGAGGACCT	0.597													12	52					0	0	1	0	0	
PRDM15	63977	broad.mit.edu	37	21	43256665	43256665	+	Silent	SNP	G	A	A	rs148897785	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:43256665G>A	uc002yzq.1	-	16	2304	c.2193C>T	c.(2191-2193)CTC>CTT	p.L731L	PRDM15_uc002yzo.2_Silent_p.L402L|PRDM15_uc002yzp.2_Silent_p.L402L|PRDM15_uc002yzr.1_Silent_p.L402L	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	731					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTGCTCCCCGAGCTGTTTGA	0.547													12	117					0	0	1	0	0	
C2CD2	25966	broad.mit.edu	37	21	43327823	43327823	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:43327823C>T	uc002yzw.2	-	9	1331	c.1089G>A	c.(1087-1089)ACG>ACA	p.T363T	C2CD2_uc002yzt.2_5'UTR|C2CD2_uc002yzu.2_Silent_p.T195T|C2CD2_uc002yzv.2_Silent_p.T208T|C2CD2_uc002yzx.1_Silent_p.T208T	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	363						cytosol|extracellular region|nucleus				ovary(1)	1						CGCTGGTCAGCGTGAAGCTCT	0.647													7	16					0	0	1	0	0	
TRAPPC10	7109	broad.mit.edu	37	21	45478985	45478985	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:45478985A>G	uc002zea.2	+	6	849	c.680A>G	c.(679-681)GAG>GGG	p.E227G	TRAPPC10_uc010gpo.2_5'UTR|TRAPPC10_uc002zdz.2_Missense_Mutation_p.E227G	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	227					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						GGCGAATAGGAGGAGCTTGCC	0.448													8	53					0	0	1	0	0	
ICOSLG	23308	broad.mit.edu	37	21	45655435	45655435	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:45655435G>A	uc002zee.2	-	4	551	c.417C>T	c.(415-417)AGC>AGT	p.S139S	ICOSLG_uc011afc.1_Silent_p.S49S|ICOSLG_uc002zef.2_Silent_p.S22S|ICOSLG_uc010gpp.1_Silent_p.S139S	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand precursor	139	Extracellular (Potential).				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0				Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)		CGACGGGCACGCTGAAGTTTG	0.597													34	83					0	0	1	0	0	
DNMT3L	29947	broad.mit.edu	37	21	45679416	45679416	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:45679416G>A	uc002zeg.1	-	5	732	c.248C>T	c.(247-249)GCC>GTC	p.A83V	DNMT3L_uc002zeh.1_Missense_Mutation_p.A83V	NM_175867	NP_787063	Q9UJW3	DNM3L_HUMAN	cytosine-5-methyltransferase 3-like protein	83	ADD.				DNA methylation|negative regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|spermatogenesis	cytosol	enzyme activator activity|enzyme binding|metal ion binding			skin(2)	2				Colorectal(79;0.0165)|READ - Rectum adenocarcinoma(84;0.0781)		CAGGAAGAGGGCATCCAGGAA	0.587													8	83					0	0	1	0	0	
COL18A1	80781	broad.mit.edu	37	21	46895395	46895395	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:46895395C>T	uc011afs.1	+	4	2010	c.1989C>T	c.(1987-1989)TCC>TCT	p.S663S	COL18A1_uc002zhg.2_Silent_p.S248S|COL18A1_uc002zhi.2_Silent_p.S428S	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	663	Nonhelical region 1 (NC1).			S -> F (in Ref. 1; AAC39658/AAC39659).	cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CTCAGGCATCCGGAGACTCTG	0.692													3	8					0	0	1	0	0	
MCM3AP	8888	broad.mit.edu	37	21	47666772	47666772	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:47666772G>A	uc002zir.1	-	21	4355	c.4319C>T	c.(4318-4320)GCC>GTC	p.A1440V	MCM3APAS_uc002zim.2_Intron|MCM3APAS_uc002zin.2_Intron|MCM3AP_uc002zio.1_5'UTR|MCM3AP_uc002zip.1_Missense_Mutation_p.A181V|MCM3AP_uc002ziq.1_Missense_Mutation_p.A367V|MCM3APAS_uc002zis.1_Intron	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	1440					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					AGCATCAATGGCACCATCACT	0.577													5	103					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47786513	47786513	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:47786513G>A	uc002zji.3	+	15	2731	c.2624G>A	c.(2623-2625)CGT>CAT	p.R875H	PCNT_uc002zjj.2_Missense_Mutation_p.R757H	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	875					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TTAGAGGAACGTAAAGAGATC	0.517													16	43					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47801609	47801609	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr21:47801609G>T	uc002zji.3	+	16	3273	c.3166G>T	c.(3166-3168)GGT>TGT	p.G1056C	PCNT_uc002zjj.2_Missense_Mutation_p.G938C	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1056	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ATGTGTACAGGGTGAATTTGG	0.408													29	90					4.02929e-09	4.30864e-09	1	1	0	
CECR2	27443	broad.mit.edu	37	22	18021966	18021966	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:18021966G>T	uc010gqw.1	+	15	2194	c.2068G>T	c.(2068-2070)GGG>TGG	p.G690W	CECR2_uc010gqv.1_Missense_Mutation_p.G549W|CECR2_uc002zml.2_Missense_Mutation_p.G549W	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	732					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CTTGCAGCTTGGGCAGATAAG	0.612													7	6					6.5536e-12	7.10112e-12	1	1	0	
DGCR2	9993	broad.mit.edu	37	22	19055688	19055688	+	Missense_Mutation	SNP	G	A	A	rs147748890	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:19055688G>A	uc002zoq.1	-	3	501	c.253C>T	c.(253-255)CGG>TGG	p.R85W	DGCR2_uc002zor.1_5'UTR|DGCR2_uc011agr.1_Missense_Mutation_p.R44W	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	85	Extracellular (Potential).				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					CGCCCCTGCCGCGGATCCACA	0.627													10	20					0	0	1	0	0	
TBX1	6899	broad.mit.edu	37	22	19766891	19766891	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:19766891C>T	uc002zqb.2	+	9	1287	c.1158C>T	c.(1156-1158)GGC>GGT	p.G386G	TBX1_uc002zqc.2_Intron	NM_080646	NP_542377	O43435	TBX1_HUMAN	T-box 1 isoform A	386					embryonic viscerocranium morphogenesis|heart development|parathyroid gland development|pharyngeal system development|regulation of transcription from RNA polymerase II promoter|soft palate development|thymus development	nucleus	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)	2	Colorectal(54;0.0993)	all_lung(157;3.05e-06)				ATACCCAGGGCCTGGTGGCTG	0.592													7	56					0	0	1	0	0	
LZTR1	8216	broad.mit.edu	37	22	21348040	21348040	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:21348040T>C	uc002zto.2	+	12	1453	c.1350T>C	c.(1348-1350)GGT>GGC	p.G450G	LZTR1_uc002ztn.2_Silent_p.G409G|LZTR1_uc011ahy.1_Silent_p.G431G|LZTR1_uc010gsr.1_Silent_p.G321G|LZTR1_uc002ztp.2_5'Flank	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	450	Kelch 6.|BTB 1.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			TCGTGCTGGGTGAGGTGGGTG	0.627													6	21					0	0	1	0	0	
SLC7A4	6545	broad.mit.edu	37	22	21385717	21385717	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:21385717C>T	uc002zud.2	-	2	453	c.385G>A	c.(385-387)GGT>AGT	p.G129S	SLC7A4_uc002zue.2_Missense_Mutation_p.G129S	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	129	Helical; (Potential).				cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GCGGCGCCACCGATGATGTAT	0.602													4	43					0	0	1	0	0	
ZDHHC8P1	150244	broad.mit.edu	37	22	23741995	23741995	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:23741995G>A	uc002zxa.3	-	3		c.1141C>T			ZDHHC8P1_uc002zxb.3_RNA|ZDHHC8P1_uc002zwz.3_RNA	NR_003950				Homo sapiens cDNA FLJ31568 fis, clone NT2RI2001595.												0						CACGGCTCACGGAGCTGGAAA	0.662													4	6					0	0	1	0	0	
CRYBB3	1417	broad.mit.edu	37	22	25597378	25597378	+	Silent	SNP	C	T	T	rs149884520		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:25597378C>T	uc003abo.1	+	2	87	c.15C>T	c.(13-15)CAC>CAT	p.H5H		NM_004076	NP_004067	P26998	CRBB3_HUMAN	crystallin, beta B3	5	N-terminal arm.				visual perception		protein binding|structural constituent of eye lens				0						CGGAACAGCACGGAGCACCCG	0.597													7	129					0	0	1	0	0	
ADRBK2	157	broad.mit.edu	37	22	26118325	26118325	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:26118325C>T	uc003abx.3	+	21	2122	c.1975C>T	c.(1975-1977)CGT>TGT	p.R659C	ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	659							ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity	p.R659P(1)		lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	GCGGCTATTGCGTCGTGCCCC	0.542													6	105					0	0	1	0	0	
OSM	5008	broad.mit.edu	37	22	30660414	30660414	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:30660414G>A	uc003ahb.2	-	3	269	c.217C>T	c.(217-219)CAC>TAC	p.H73Y		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	73					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			TCCCTGCAGTGCTCTCTCAGT	0.602													6	28					0	0	1	0	0	
OSBP2	23762	broad.mit.edu	37	22	31302243	31302243	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:31302243G>A	uc003aiy.1	+	14	2772	c.2668G>A	c.(2668-2670)GGG>AGG	p.G890R	OSBP2_uc011ala.1_Missense_Mutation_p.G724R|OSBP2_uc010gwc.1_Missense_Mutation_p.G717R|OSBP2_uc011alb.1_3'UTR|OSBP2_uc003aiz.1_Missense_Mutation_p.G889R|OSBP2_uc003aja.1_Missense_Mutation_p.G523R|OSBP2_uc011alc.1_Missense_Mutation_p.G633R|OSBP2_uc003ajb.2_Missense_Mutation_p.G435R|OSBP2_uc011ald.1_Missense_Mutation_p.G434R|OSBP2_uc010gwd.1_3'UTR	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	890					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						TCCGCTGACCGGGGAGATGGC	0.612													7	112					0	0	1	0	0	
PLA2G3	50487	broad.mit.edu	37	22	31533732	31533732	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:31533732C>A	uc003aka.2	-	4	1159	c.1030G>T	c.(1030-1032)GGC>TGC	p.G344C		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	344					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CCCTGGAGGCCTGTGGGGGCC	0.617													44	101					6.03219e-31	6.66695e-31	1	1	0	
PISD	23761	broad.mit.edu	37	22	32017778	32017778	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:32017778C>T	uc003alm.3	-	4	422	c.415G>A	c.(415-417)GTC>ATC	p.V139I	PISD_uc003alk.2_Missense_Mutation_p.V105I|PISD_uc003all.2_Missense_Mutation_p.V104I|PISD_uc011alr.1_Missense_Mutation_p.V104I|PISD_uc003aln.3_Missense_Mutation_p.V139I	NM_014338	NP_055153	Q9UG56	PISD_HUMAN	phosphatidylserine decarboxylase	139					phospholipid biosynthetic process	mitochondrion	phosphatidylserine decarboxylase activity			central_nervous_system(2)|ovary(1)	3					Phosphatidylserine(DB00144)	AGGCTGTAGACGGGCCTGCGC	0.607													5	65					0	0	1	0	0	
TOM1	10043	broad.mit.edu	37	22	35719087	35719087	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:35719087G>A	uc003ann.2	+	4	408	c.283G>A	c.(283-285)GTG>ATG	p.V95M	TOM1_uc011ami.1_Missense_Mutation_p.V62M|TOM1_uc011amj.1_Translation_Start_Site|TOM1_uc003ans.2_Translation_Start_Site|TOM1_uc011amk.1_Missense_Mutation_p.V57M|TOM1_uc003anp.2_Missense_Mutation_p.V95M|TOM1_uc011aml.1_Missense_Mutation_p.V95M|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Missense_Mutation_p.V89M|TOM1_uc003anr.2_Translation_Start_Site	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	95	VHS.				endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						CCAGGACTTCGTGGAGAGTGT	0.602													8	52					0	0	1	0	0	
MYH9	4627	broad.mit.edu	37	22	36680552	36680552	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:36680552C>T	uc003apg.2	-	39	5720	c.5489G>A	c.(5488-5490)CGC>CAC	p.R1830H		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1830	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GGCTGCCTGGCGCTCCCTGCA	0.622			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				6	56					0	0	1	0	0	
MYH9	4627	broad.mit.edu	37	22	36684927	36684927	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:36684927G>A	uc003apg.2	-	33	4847	c.4616C>T	c.(4615-4617)ACG>ATG	p.T1539M		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1539	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTCCAGCTGCGTCTTCATCTC	0.627			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				6	85					0	0	1	0	0	
MYH9	4627	broad.mit.edu	37	22	36689446	36689446	+	Missense_Mutation	SNP	G	A	A	rs147901502	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:36689446G>A	uc003apg.2	-	30	4255	c.4024C>T	c.(4024-4026)CGG>TGG	p.R1342W		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1342	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						AGCTGCTCCCGGAAGGAATTC	0.632			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				30	68					0	0	1	0	0	
SH3BP1	23616	broad.mit.edu	37	22	38040646	38040646	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:38040646C>T	uc003ati.2	+	8	732	c.621C>T	c.(619-621)GAC>GAT	p.D207D	SH3BP1_uc003atg.1_RNA|SH3BP1_uc011anl.1_Silent_p.D207D|SH3BP1_uc003ath.1_Silent_p.D207D|SH3BP1_uc003atj.1_Silent_p.D143D|SH3BP1_uc003atk.1_Silent_p.D121D|uc003atl.1_Intron	NM_018957	NP_061830	Q9Y3L3	3BP1_HUMAN	SH3-domain binding protein 1	207	BAR.				signal transduction	cytoplasm	GTPase activator activity|SH3 domain binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TCCCCAAGGACGAGTACTTGG	0.428													23	282					0	0	1	0	0	
KCNJ4	3761	broad.mit.edu	37	22	38824122	38824122	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:38824122G>A	uc003avs.1	-	2	113	c.16C>T	c.(16-18)CGC>TGC	p.R6C	KCNJ4_uc003avt.1_Missense_Mutation_p.R6C	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	6	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					TGGCCGTTGCGGCTGTGTCCG	0.657													77	185					0	0	1	0	0	
GTPBP1	9567	broad.mit.edu	37	22	39112791	39112791	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:39112791G>A	uc003awg.2	+	4	774	c.620G>A	c.(619-621)CGC>CAC	p.R207H		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	207					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					GAATCTGGTCGCACCAGCAGT	0.567													10	96					0	0	1	0	0	
MCHR1	2847	broad.mit.edu	37	22	41077107	41077107	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:41077107C>T	uc003ayz.2	+	2	712	c.444C>T	c.(442-444)GAC>GAT	p.D148D	MCHR1_uc003aza.2_Silent_p.D37D	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	148	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						ACGTCCCCGACATCTTCATCA	0.562													12	66					0	0	1	0	0	
RANGAP1	5905	broad.mit.edu	37	22	41660826	41660826	+	Missense_Mutation	SNP	T	C	C	rs143626610	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:41660826T>C	uc003azs.2	-	4	1792	c.322A>G	c.(322-324)ATC>GTC	p.I108V	RANGAP1_uc003azt.2_Missense_Mutation_p.I108V|RANGAP1_uc003azu.2_Missense_Mutation_p.I108V|RANGAP1_uc011aoz.1_Missense_Mutation_p.I98V	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	108					mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						CCAGCTGTGATGAGTCCTTCC	0.597													13	97					0	0	1	0	0	
MEI1	150365	broad.mit.edu	37	22	42190432	42190432	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:42190432C>A	uc003baz.1	+	28	3510	c.3485C>A	c.(3484-3486)GCT>GAT	p.A1162D	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Missense_Mutation_p.A548D|MEI1_uc003bbc.1_Missense_Mutation_p.A530D|MEI1_uc010gym.1_Missense_Mutation_p.A495D|MEI1_uc003bbd.1_Missense_Mutation_p.A405D|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc011apf.1_3'UTR|MEI1_uc010gyo.1_3'UTR|MEI1_uc003bbf.2_Missense_Mutation_p.A176D|MEI1_uc003bbg.2_Missense_Mutation_p.A176D	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1162							binding			central_nervous_system(1)|skin(1)	2						CTCTTGGATGCTGGAGAGAAT	0.498													17	175					7.07758e-08	7.53065e-08	1	1	0	
NAGA	4668	broad.mit.edu	37	22	42463259	42463259	+	Silent	SNP	C	T	T	rs149600926		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:42463259C>T	uc003bbx.2	-	5	497	c.360G>A	c.(358-360)GCG>GCA	p.A120A	NAGA_uc003bby.2_Silent_p.A120A|NAGA_uc003bbw.3_Silent_p.A120A	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	120					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						TGCCCATGTCCGCGTAGATAC	0.577													12	144					0	0	1	0	0	
PARVB	29780	broad.mit.edu	37	22	44495947	44495947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:44495947C>T	uc003ben.2	+	3	269	c.217C>T	c.(217-219)CGC>TGC	p.R73C	PARVB_uc003bem.2_Missense_Mutation_p.R106C|PARVB_uc010gzn.2_Missense_Mutation_p.R21C|PARVB_uc003beo.2_Missense_Mutation_p.R36C	NM_013327	NP_037459	Q9HBI1	PARVB_HUMAN	parvin, beta isoform b	73					cell adhesion|cell junction assembly	cytoskeleton|cytosol|focal adhesion	actin binding				0		Ovarian(80;0.0246)|all_neural(38;0.0423)				GAACGAGGAGCGCACGATGAT	0.572													4	75					0	0	1	0	0	
KIAA1644	85352	broad.mit.edu	37	22	44681394	44681394	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:44681394C>T	uc003bet.2	-	4	646	c.513G>A	c.(511-513)CCG>CCA	p.P171P		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	171	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				CTTGTGGCAGCGGGCCTGGGG	0.687													24	59					0	0	1	0	0	
FAM118A	55007	broad.mit.edu	37	22	45726600	45726600	+	Silent	SNP	C	T	T	rs150737794	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:45726600C>T	uc003bfz.3	+	6	1255	c.639C>T	c.(637-639)GAC>GAT	p.D213D	FAM118A_uc003bga.3_Silent_p.D213D|FAM118A_uc011aqr.1_Silent_p.D31D	NM_001104595	NP_001098065	Q9NWS6	F118A_HUMAN	hypothetical protein LOC55007	213						integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCACTCAAGACGCAGAAGTCA	0.592													8	32					0	0	1	0	0	
CELSR1	9620	broad.mit.edu	37	22	46859655	46859655	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:46859655A>T	uc003bhw.1	-	2	4132	c.4132T>A	c.(4132-4134)TGC>AGC	p.C1378S		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1378	Extracellular (Potential).|EGF-like 2; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CGGCTGCGGCAGCGGCCGTTG	0.687													5	11					0	0	1	0	0	
BRD1	23774	broad.mit.edu	37	22	50217616	50217616	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:50217616A>C	uc003biv.2	-	1	837	c.350T>G	c.(349-351)CTC>CGC	p.L117R	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Missense_Mutation_p.L117R|BRD1_uc011arh.1_Missense_Mutation_p.L117R|BRD1_uc003biu.3_Missense_Mutation_p.L117R	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	117					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGGCTCCGGGAGGGCACTGGC	0.607													35	64					0	0	1	0	0	
TUBGCP6	85378	broad.mit.edu	37	22	50659166	50659166	+	Missense_Mutation	SNP	T	C	C	rs145066767		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:50659166T>C	uc003bkb.1	-	16	4134	c.3622A>G	c.(3622-3624)ACC>GCC	p.T1208A	TUBGCP6_uc003bka.1_Missense_Mutation_p.T295A|TUBGCP6_uc010har.1_Missense_Mutation_p.T1200A|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1208	7.|9 X 27 AA tandem repeats.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CGTGGCCGGGTGGGAGCCATG	0.622													3	72					0	0	1	0	0	
TYMP	1890	broad.mit.edu	37	22	50966139	50966139	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:50966139A>G	uc003bmb.3	-	4	644	c.524T>C	c.(523-525)GTG>GCG	p.V175A	SCO2_uc003bma.2_5'Flank|SCO2_uc003blz.3_5'Flank|TYMP_uc003bmc.3_Missense_Mutation_p.V175A|TYMP_uc003bmd.3_Missense_Mutation_p.V175A|TYMP_uc010hbd.2_Missense_Mutation_p.V175A|TYMP_uc003bme.3_Missense_Mutation_p.V175A|TYMP_uc003bmf.3_Missense_Mutation_p.V142A|TYMP_uc011arz.1_Missense_Mutation_p.V175A	NM_001113756	NP_001107228	P19971	TYPH_HUMAN	endothelial cell growth factor 1	175					angiogenesis|cell differentiation|chemotaxis|DNA replication|mitochondrial genome maintenance|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|pyrimidine nucleotide metabolic process	cytosol	growth factor activity|platelet-derived growth factor receptor binding|pyrimidine-nucleoside phosphorylase activity|thymidine phosphorylase activity	p.V175V(1)		ovary(1)	1		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)	Capecitabine(DB01101)|Docetaxel(DB01248)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Sulfasalazine(DB00795)|Tamoxifen(DB00675)	GTCCAGCAGCACTTGCATCTG	0.438													9	87					0	0	1	0	0	
KLHDC7B	113730	broad.mit.edu	37	22	50988017	50988017	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr22:50988017C>T	uc003bmi.2	+	1	1556	c.1422C>T	c.(1420-1422)GAC>GAT	p.D474D		NM_138433	NP_612442	Q96G42	KLD7B_HUMAN	kelch domain containing 7B	474	Kelch 4.									central_nervous_system(1)	1		all_cancers(38;1.53e-10)|all_epithelial(38;1.82e-09)|Breast(42;0.000448)|all_lung(38;0.000665)|Lung NSC(38;0.0104)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		OV - Ovarian serous cystadenocarcinoma(4;7.49e-69)|all cancers(3;9.79e-66)|Epithelial(4;1.3e-63)|GBM - Glioblastoma multiforme(4;0.000399)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ATGCTTGGGACGAGTGCCCAT	0.682													9	100					0	0	1	0	0	
LRRN1	57633	broad.mit.edu	37	3	3887325	3887325	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:3887325C>T	uc003bpt.3	+	2	1761	c.1000C>T	c.(1000-1002)CGA>TGA	p.R334*	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	334	LRR 10.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		CTTGGCTTTCCGAAGTGTCCC	0.493													13	29					0	0	1	0	0	
SUMF1	285362	broad.mit.edu	37	3	4418024	4418024	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:4418024A>G	uc003bpz.1	-	8	1029	c.1004T>C	c.(1003-1005)ATG>ACG	p.M335T	SUMF1_uc003bps.1_RNA|SUMF1_uc011ass.1_Missense_Mutation_p.M310T|SUMF1_uc010hby.1_Intron|SUMF1_uc011ast.1_Missense_Mutation_p.M203T	NM_182760	NP_877437	Q8NBK3	SUMF1_HUMAN	sulfatase modifying factor 1 isoform 1	335						endoplasmic reticulum lumen	metal ion binding|oxidoreductase activity			upper_aerodigestive_tract(1)	1		Melanoma(143;0.068)|Colorectal(144;0.233)		Epithelial(13;0.0147)|OV - Ovarian serous cystadenocarcinoma(96;0.0444)|all cancers(10;0.0549)		CCTATGGCACATGTAGGATCC	0.438													15	190					0	0	1	0	0	
LMCD1	29995	broad.mit.edu	37	3	8590348	8590348	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:8590348T>C	uc003bqq.2	+	4	596	c.482T>C	c.(481-483)CTC>CCC	p.L161P	LMCD1_uc011atd.1_Missense_Mutation_p.L88P|LMCD1_uc011ate.1_Missense_Mutation_p.L49P|LMCD1_uc011atf.1_Missense_Mutation_p.L88P	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	161	PET.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		ATGCACCAGCTCCCCATCTAT	0.557													14	144					0	0	1	0	0	
SETD5	55209	broad.mit.edu	37	3	9517751	9517751	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:9517751C>T	uc003brt.2	+	23	4740	c.4305C>T	c.(4303-4305)GTC>GTT	p.V1435V	SETD5_uc003bru.2_Silent_p.V1337V|SETD5_uc003brv.2_Silent_p.V1324V|SETD5_uc010hck.2_Silent_p.V917V|SETD5_uc003brx.2_Silent_p.V1104V	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	1435										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		GGTCAGGAGTCAAGACTCAGA	0.572													7	9					0	0	1	0	0	
ATP2B2	491	broad.mit.edu	37	3	10444026	10444026	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:10444026G>A	uc003bvt.2	-	4	843	c.404C>T	c.(403-405)GCG>GTG	p.A135V	ATP2B2_uc003bvv.2_Missense_Mutation_p.A135V|ATP2B2_uc003bvw.2_Missense_Mutation_p.A135V|ATP2B2_uc010hdp.2_Missense_Mutation_p.A135V|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	135	Extracellular (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGGGCCGTCGCACATCCTGA	0.572													40	89					0	0	1	0	0	
ZFYVE20	64145	broad.mit.edu	37	3	15116196	15116196	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:15116196C>T	uc003bzm.1	-	14	2062	c.1448G>A	c.(1447-1449)CGC>CAC	p.R483H	ZFYVE20_uc010hek.1_Missense_Mutation_p.R483H	NM_022340	NP_071735	Q9H1K0	RBNS5_HUMAN	FYVE-finger-containing Rab5 effector protein	483	Necessary for the interaction with RAB4A.|Potential.|Necessary for the interaction with EHD1.				blood coagulation|endosome transport|protein transport	early endosome membrane|plasma membrane	protein binding|zinc ion binding			skin(2)	2						CTGCAGAGTGCGCACTTCATC	0.622													23	82					0	0	1	0	0	
SCN5A	6331	broad.mit.edu	37	3	38595862	38595862	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:38595862T>C	uc003cio.2	-	27	4915	c.4721A>G	c.(4720-4722)GAG>GGG	p.E1574G	SCN5A_uc003cin.2_Missense_Mutation_p.E1573G|SCN5A_uc003cil.3_Missense_Mutation_p.E1574G|SCN5A_uc010hhi.2_Missense_Mutation_p.E1556G|SCN5A_uc010hhk.2_Intron|SCN5A_uc011ayr.1_Missense_Mutation_p.E1520G	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1574	Helical; Name=S2 of repeat IV; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GACAATACACTCGCCTGTGAA	0.493													14	90					0	0	1	0	0	
C3orf39	84892	broad.mit.edu	37	3	43121611	43121611	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:43121611C>T	uc003cmq.1	-	2	1454	c.1313G>A	c.(1312-1314)CGG>CAG	p.R438Q	C3orf39_uc003cmr.1_Missense_Mutation_p.R438Q	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	438						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		CTCGGGGTTCCGGCAACAGAG	0.637													11	21					0	0	1	0	0	
MAP4	4134	broad.mit.edu	37	3	47958085	47958085	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:47958085A>G	uc003csb.2	-	7	1758	c.1232T>C	c.(1231-1233)GTA>GCA	p.V411A	MAP4_uc003csc.3_Missense_Mutation_p.V411A|MAP4_uc011bbf.1_Missense_Mutation_p.V388A|MAP4_uc003csf.3_Missense_Mutation_p.V428A	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	411	17 X 14 AA tandem repeats.|9.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGAGAGTAATACCAAATCCTT	0.438													19	183					0	0	1	0	0	
COL7A1	1294	broad.mit.edu	37	3	48629343	48629343	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:48629343G>A	uc003ctz.2	-	10	1346	c.1345C>T	c.(1345-1347)CGG>TGG	p.R449W		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	449	Nonhelical region (NC1).|Fibronectin type-III 3.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GTCTCACGCCGCCATTCCAAC	0.627													30	68					0	0	1	0	0	
WDR6	11180	broad.mit.edu	37	3	49050093	49050093	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49050093G>A	uc003cvj.2	+	2	1354	c.1216G>A	c.(1216-1218)GTC>ATC	p.V406I	WDR6_uc011bbx.1_Missense_Mutation_p.V277I|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Missense_Mutation_p.V350I|WDR6_uc011bbz.1_Missense_Mutation_p.V325I	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	376	WD 6.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		TCTCTATGACGTCGAGGTCAA	0.577													16	32					0	0	1	0	0	
WDR6	11180	broad.mit.edu	37	3	49050138	49050138	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49050138C>A	uc003cvj.2	+	2	1399	c.1261C>A	c.(1261-1263)CAG>AAG	p.Q421K	WDR6_uc011bbx.1_Missense_Mutation_p.Q292K|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Missense_Mutation_p.Q365K|WDR6_uc011bbz.1_Missense_Mutation_p.Q340K	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	391					cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		TAAACATTTCCAGTCCTACTG	0.567													4	38					0.00909568	0.00923047	1	1	0	
USP19	10869	broad.mit.edu	37	3	49153200	49153200	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49153200G>T	uc003cwd.1	-	10	1501	c.1340C>A	c.(1339-1341)CCC>CAC	p.P447H	USP19_uc003cwa.2_Missense_Mutation_p.P255H|USP19_uc003cvz.3_Missense_Mutation_p.P550H|USP19_uc011bcg.1_Missense_Mutation_p.P538H|USP19_uc003cwb.2_Missense_Mutation_p.P533H|USP19_uc003cwc.1_Missense_Mutation_p.P205H|USP19_uc011bch.1_Missense_Mutation_p.P548H|USP19_uc011bci.1_Missense_Mutation_p.P535H	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	447	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ATGCTCCATGGGTGTGCGGGT	0.597													9	68					1.76689e-08	1.88469e-08	1	1	0	
LAMB2	3913	broad.mit.edu	37	3	49159273	49159273	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49159273A>G	uc003cwe.2	-	30	5243	c.4944T>C	c.(4942-4944)GGT>GGC	p.G1648G	USP19_uc003cvz.3_5'Flank|USP19_uc011bcg.1_5'Flank|USP19_uc003cwb.2_5'Flank|USP19_uc003cwd.1_5'Flank|USP19_uc011bch.1_5'Flank|USP19_uc011bci.1_5'Flank	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1648	Potential.|Domain I.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CCCGCTCTGCACCTGCCATCC	0.552													4	48					0	0	1	0	0	
GPX1	2876	broad.mit.edu	37	3	49394982	49394982	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49394982T>C	uc011bcl.1	-	3	531	c.451A>G	c.(451-453)ACC>GCC	p.T151A	GPX1_uc011bcm.1_3'UTR	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	151					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	GGAGACCAGGTGATGAGCTTG	0.657													10	61					0	0	1	0	0	
GMPPB	29925	broad.mit.edu	37	3	49759315	49759315	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49759315A>G	uc003cxk.1	-	9	1178	c.953T>C	c.(952-954)GTA>GCA	p.V318A	AMIGO3_uc003cxj.2_5'Flank|GMPPB_uc003cxl.1_Missense_Mutation_p.V345A	NM_021971	NP_068806	Q9Y5P6	GMPPB_HUMAN	GDP-mannose pyrophosphorylase B isoform 2	318					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CTCCATGCGTACCTCCAGGAG	0.617													7	64					0	0	1	0	0	
TRAIP	10293	broad.mit.edu	37	3	49879890	49879890	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49879890C>A	uc003cxs.1	-	6	605	c.499G>T	c.(499-501)GAG>TAG	p.E167*	TRAIP_uc010hla.1_Intron	NM_005879	NP_005870	Q9BWF2	TRAIP_HUMAN	TRAF interacting protein	167	Potential.				cell proliferation|induction of apoptosis	perinuclear region of cytoplasm	protein binding|zinc ion binding			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACTCACTGCTCCATGGTCTTC	0.557													5	90					0.00198382	0.00202401	1	1	0	
CAMKV	79012	broad.mit.edu	37	3	49898891	49898891	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:49898891A>G	uc003cxt.1	-	5	615	c.422T>C	c.(421-423)ATC>ACC	p.I141T	CAMKV_uc011bcy.1_Missense_Mutation_p.I66T|CAMKV_uc003cxv.1_Missense_Mutation_p.I141T|CAMKV_uc003cxw.1_5'UTR|CAMKV_uc003cxx.1_5'UTR|CAMKV_uc003cxu.2_Missense_Mutation_p.I141T|CAMKV_uc011bcz.1_Missense_Mutation_p.I104T|CAMKV_uc011bda.1_Intron|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	141	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCTGTGCACGATCTTGAGTGA	0.592													4	54					0	0	1	0	0	
NPRL2	10641	broad.mit.edu	37	3	50385556	50385556	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:50385556G>A	uc003daj.1	-	9	1334	c.931C>T	c.(931-933)CGG>TGG	p.R311W	ZMYND10_uc003dag.1_5'Flank|ZMYND10_uc010hll.1_5'Flank|ZMYND10_uc003dah.1_5'Flank|ZMYND10_uc010hlm.1_5'Flank|NPRL2_uc003dai.1_Missense_Mutation_p.R191W|CYB561D2_uc003dak.2_5'Flank|CYB561D2_uc003dal.2_5'Flank|CYB561D2_uc003dam.2_5'Flank	NM_006545	NP_006536	Q8WTW4	NPRL2_HUMAN	tumor suppressor candidate 4	311					negative regulation of kinase activity		protein binding|protein kinase activity			lung(1)	1						TCCTCTGACCGTTCATCAACA	0.572													21	73					0	0	1	0	0	
C3orf18	51161	broad.mit.edu	37	3	50603087	50603087	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:50603087C>T	uc003das.2	-	2	495	c.44G>A	c.(43-45)CGC>CAC	p.R15H	C3orf18_uc003dar.2_Missense_Mutation_p.R15H|C3orf18_uc011bdr.1_Intron|C3orf18_uc010hlo.2_Missense_Mutation_p.R15H|C3orf18_uc010hlp.2_Intron|C3orf18_uc003dat.2_Missense_Mutation_p.R15H	NM_016210	NP_057294	Q9UK00	CC018_HUMAN	hypothetical protein LOC51161	15						integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.0175)|Kidney(197;0.0207)		GGTGGGTGGGCGGCTGCTGAA	0.627													13	29					0	0	1	0	0	
RAD54L2	23132	broad.mit.edu	37	3	51667644	51667644	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:51667644T>G	uc011bdt.1	+	7	1002	c.877T>G	c.(877-879)TTT>GTT	p.F293V	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_5'UTR|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	293	Helicase ATP-binding.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TCTGGAGAGGTTTAAGACCAG	0.517													9	88					0	0	1	0	0	
RAD54L2	23132	broad.mit.edu	37	3	51669679	51669679	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:51669679G>A	uc011bdt.1	+	9	1338	c.1213G>A	c.(1213-1215)GAG>AAG	p.E405K	RAD54L2_uc003dbh.2_5'UTR|RAD54L2_uc011bdu.1_Missense_Mutation_p.E99K|RAD54L2_uc003dbj.2_5'UTR	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	405	Helicase ATP-binding.					nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GATGGGGTACGAGATGTACAG	0.483													12	31					0	0	1	0	0	
TLR9	54106	broad.mit.edu	37	3	52257056	52257056	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:52257056G>A	uc003dda.1	-	2	1910	c.1276C>T	c.(1276-1278)CGC>TGC	p.R426C	TLR9_uc003ddb.2_Missense_Mutation_p.R523C	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	426	LRR 14.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CCGCTGATGCGGTTGTCCGAC	0.642													24	118					0	0	1	0	0	
DNAH1	25981	broad.mit.edu	37	3	52400778	52400778	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:52400778G>A	uc011bef.1	+	36	5901	c.5640G>A	c.(5638-5640)ACG>ACA	p.T1880T		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1880	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTGCCATGACGTCACTGAAAG	0.612													21	74					0	0	1	0	0	
NT5DC2	64943	broad.mit.edu	37	3	52568610	52568610	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:52568610C>T	uc003deo.2	-	1	484	c.60G>A	c.(58-60)ACG>ACA	p.T20T	NT5DC2_uc003den.2_5'Flank|NT5DC2_uc010hmi.2_5'Flank|NT5DC2_uc010hmj.2_5'UTR|LOC440957_uc003dep.2_5'Flank	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	20							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		TTTCTAGCAACGTCGACAGGC	0.592													39	109					0	0	1	0	0	
ERC2	26059	broad.mit.edu	37	3	55922525	55922525	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:55922525G>T	uc003dhr.1	-	14	2712	c.2456C>A	c.(2455-2457)ACC>AAC	p.T819N	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Missense_Mutation_p.T298N	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	819	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCGTGCTTTGGTGGCATCCAG	0.522													13	127					1.56452e-12	1.70061e-12	1	1	0	
PDE12	201626	broad.mit.edu	37	3	57543266	57543266	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:57543266G>A	uc003diw.3	+	1	1286	c.1160G>A	c.(1159-1161)CGA>CAA	p.R387Q	PDE12_uc003div.2_Missense_Mutation_p.R387Q	NM_177966	NP_808881	Q6L8Q7	PDE12_HUMAN	phosphodiesterase 12	387							hydrolase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		ACTTTCTACCGAAAGTCTAAG	0.527													8	34					0	0	1	0	0	
SLMAP	7871	broad.mit.edu	37	3	57743556	57743556	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:57743556T>G	uc003dje.1	+	1	383	c.178T>G	c.(178-180)TTT>GTT	p.F60V	SLMAP_uc003djc.1_Missense_Mutation_p.F60V|SLMAP_uc003djd.1_Missense_Mutation_p.F60V|SLMAP_uc003djf.1_Missense_Mutation_p.F60V	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	60	Necessary for targeting to centrosomes (By similarity).|Cytoplasmic (Potential).|FHA.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		TCTCGTCTGGTTTGATCACAA	0.493													4	43					0	0	1	0	0	
PRICKLE2	166336	broad.mit.edu	37	3	64138947	64138947	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:64138947C>T	uc003dmf.2	-	6	1284	c.698G>A	c.(697-699)CGC>CAC	p.R233H		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	233	LIM zinc-binding 2.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		CATGATGTAGCGCTGGCCGCC	0.507													13	138					0	0	1	0	0	
SHQ1	55164	broad.mit.edu	37	3	72799562	72799562	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:72799562C>A	uc003dpf.2	-	11	1714	c.1607G>T	c.(1606-1608)GGG>GTG	p.G536V	SHQ1_uc010hod.2_Missense_Mutation_p.G447V	NM_018130	NP_060600	Q6PI26	SHQ1_HUMAN	SHQ1 homolog	536					ribonucleoprotein complex assembly	cytosol|nucleoplasm	protein binding			ovary(2)|large_intestine(1)	3		Prostate(10;0.00482)|Lung NSC(201;0.0339)|Myeloproliferative disorder(1037;0.204)		BRCA - Breast invasive adenocarcinoma(55;9.68e-05)|Epithelial(33;0.000563)|LUSC - Lung squamous cell carcinoma(21;0.00229)|Lung(16;0.00688)|KIRC - Kidney renal clear cell carcinoma(39;0.018)|Kidney(39;0.0213)		TATCAGAGGCCCAGACACTCC	0.517													22	65					3.73808e-20	4.10231e-20	1	1	0	
PDZRN3	23024	broad.mit.edu	37	3	73453461	73453461	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:73453461A>G	uc003dpl.1	-	4	1100	c.1004T>C	c.(1003-1005)GTG>GCG	p.V335A	PDZRN3_uc011bgh.1_5'UTR|PDZRN3_uc010hoe.1_Missense_Mutation_p.V33A|PDZRN3_uc011bgf.1_Missense_Mutation_p.V52A|PDZRN3_uc011bgg.1_Missense_Mutation_p.V55A	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	335	PDZ 1.						ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TCTTCTCAACACCTGCACCAC	0.493													6	56					0	0	1	0	0	
ROBO2	6092	broad.mit.edu	37	3	77651597	77651597	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:77651597A>T	uc003dpy.3	+	20	3734	c.3091A>T	c.(3091-3093)ATG>TTG	p.M1031L	ROBO2_uc003dpz.2_Missense_Mutation_p.M1035L|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.M1035L|ROBO2_uc003dqa.2_Missense_Mutation_p.M158L	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1031	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AACAGATCTGATGGGATTTGG	0.418													7	116					0	0	1	0	0	
LNP1	348801	broad.mit.edu	37	3	100170683	100170683	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:100170683T>C	uc003dtx.3	+	3	1557	c.277T>C	c.(277-279)TCA>CCA	p.S93P	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	93											0						AGAGGATGGGTCATTCAAGGA	0.448													3	88					0	0	1	0	0	
ZBTB11	27107	broad.mit.edu	37	3	101370285	101370285	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:101370285G>A	uc003dve.3	-	11	3117	c.2887C>T	c.(2887-2889)CAT>TAT	p.H963Y		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	963					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTAACAGCATGTGCCACTTGA	0.433													15	122					0	0	1	0	0	
MORC1	27136	broad.mit.edu	37	3	108773717	108773717	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:108773717G>A	uc003dxl.2	-	14	1275	c.1188C>T	c.(1186-1188)GGC>GGT	p.G396G	MORC1_uc011bhn.1_Silent_p.G396G	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	396					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTCCAACCACGCCTGCGCCAA	0.308													13	35					0	0	1	0	0	
C3orf17	25871	broad.mit.edu	37	3	112724472	112724472	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:112724472T>C	uc003dzr.2	-	9	1676	c.1615A>G	c.(1615-1617)ACG>GCG	p.T539A	GTPBP8_uc011bhy.1_Intron|C3orf17_uc003dzq.2_Missense_Mutation_p.T164A|C3orf17_uc011bhz.1_Missense_Mutation_p.T164A|C3orf17_uc010hqh.2_Missense_Mutation_p.T164A|C3orf17_uc003dzt.2_Missense_Mutation_p.T442A|C3orf17_uc003dzs.2_Missense_Mutation_p.T403A|C3orf17_uc010hqg.2_Missense_Mutation_p.T364A|C3orf17_uc011bia.1_Missense_Mutation_p.T336A|C3orf17_uc003dzu.2_Missense_Mutation_p.T468A|C3orf17_uc011bib.1_Missense_Mutation_p.T428A|C3orf17_uc011bic.1_Missense_Mutation_p.T372A|C3orf17_uc011bid.1_RNA	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	539						integral to membrane					0						TGCATCACCGTCCACGAATCA	0.353													6	87					0	0	1	0	0	
NAA50	80218	broad.mit.edu	37	3	113440776	113440776	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:113440776T>G	uc003ean.1	-	5	641	c.341A>C	c.(340-342)CAG>CCG	p.Q114P	NAA50_uc010hqm.1_Missense_Mutation_p.Q40P|NAA50_uc011bij.1_Missense_Mutation_p.Q40P	NM_025146	NP_079422	Q9GZZ1	NAA50_HUMAN	N-acetyltransferase 13	114	N-acetyltransferase.				N-terminal protein amino acid acetylation	cytoplasm	N-acetyltransferase activity|protein binding				0						ATTGCTGATCTGGACATGCCT	0.373													8	21					0	0	1	0	0	
ZBTB20	26137	broad.mit.edu	37	3	114069855	114069855	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:114069855G>A	uc003ebi.2	-	4	1250	c.1070C>T	c.(1069-1071)ACG>ATG	p.T357M	ZBTB20_uc003ebj.2_Missense_Mutation_p.T284M|ZBTB20_uc010hqp.2_Missense_Mutation_p.T284M|ZBTB20_uc003ebk.2_Missense_Mutation_p.T284M|ZBTB20_uc003ebl.2_Missense_Mutation_p.T284M|ZBTB20_uc003ebm.2_Missense_Mutation_p.T284M|ZBTB20_uc003ebn.2_Missense_Mutation_p.T284M|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	357					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		TGTGTCTTCCGTGCACTCCTC	0.592													22	32					0	0	1	0	0	
NR1I2	8856	broad.mit.edu	37	3	119528957	119528957	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:119528957G>A	uc003edj.2	+	3	2086	c.247G>A	c.(247-249)GCC>ACC	p.A83T	NR1I2_uc003edi.2_Missense_Mutation_p.A83T|NR1I2_uc003edk.2_Missense_Mutation_p.A122T|NR1I2_uc003edl.2_5'Flank	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	83	Nuclear receptor.|Bipartite nuclear localization signal.|NR C4-type.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	CCGGAAGGGCGCCTGCGAGAT	0.652													11	21					0	0	1	0	0	
CASR	846	broad.mit.edu	37	3	121976124	121976124	+	Missense_Mutation	SNP	T	C	C	rs104893696		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:121976124T>C	uc003eev.3	+	3	754	c.382T>C	c.(382-384)TTC>CTC	p.F128L	CASR_uc003eew.3_Missense_Mutation_p.F128L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	128	Extracellular (Potential).		F -> L (in FIH; there is a shift in the dose-response curve so that the extracellular calcium concentration needed to produce half-maximal increase in total inositol phosphate in the cells is significantly lower than the one required for the wild-type receptor).		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCTTGATGAGTTCTGCAACTG	0.483													9	90					0	0	1	0	0	
KALRN	8997	broad.mit.edu	37	3	124053260	124053260	+	Missense_Mutation	SNP	G	A	A	rs35057827		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:124053260G>A	uc003ehg.2	+	9	1686	c.1559G>A	c.(1558-1560)CGG>CAG	p.R520Q	KALRN_uc010hrv.1_Missense_Mutation_p.R520Q|KALRN_uc003ehf.1_Missense_Mutation_p.R520Q|KALRN_uc011bjy.1_Missense_Mutation_p.R520Q	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	520					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CACCAGCGACGGCTGGAGAGC	0.622													11	47					0	0	1	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126723974	126723974	+	Silent	SNP	C	T	T	rs145552902		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:126723974C>T	uc003ejg.2	+	6	1720	c.1716C>T	c.(1714-1716)GGC>GGT	p.G572G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	595	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		TCTCAGCTGGCGTCAACTGCT	0.657													10	25					0	0	1	0	0	
C3orf37	56941	broad.mit.edu	37	3	129007805	129007805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:129007805C>T	uc003elt.2	+	3	380	c.292C>T	c.(292-294)CGT>TGT	p.R98C	C3orf37_uc003elu.2_Missense_Mutation_p.R98C|C3orf37_uc003elv.2_Missense_Mutation_p.R98C|C3orf37_uc003elw.2_Missense_Mutation_p.R98C	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	98										ovary(1)	1						TACCAACTGTCGTAGTGATAC	0.473													4	63					0	0	1	0	0	
ATP2C1	27032	broad.mit.edu	37	3	130735042	130735042	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:130735042C>A	uc011bli.1	+	28	3093	c.2873C>A	c.(2872-2874)CCC>CAC	p.P958H	ATP2C1_uc011blh.1_Missense_Mutation_p.P929H|ATP2C1_uc003enm.2_3'UTR|ATP2C1_uc003enn.2_Missense_Mutation_p.P908H|ATP2C1_uc003enp.2_3'UTR|ATP2C1_uc003enr.2_3'UTR|ATP2C1_uc003ens.2_Missense_Mutation_p.P934H|ATP2C1_uc003ent.2_Missense_Mutation_p.P924H|ASTE1_uc010htm.1_Missense_Mutation_p.G552V|ASTE1_uc003env.1_Missense_Mutation_p.G552V|ASTE1_uc011blj.1_RNA	NM_001001487	NP_001001487	P98194	AT2C1_HUMAN	calcium-transporting ATPase 2C1 isoform 1b	Error:Variant_position_missing_in_P98194_after_alignment					actin cytoskeleton reorganization|ATP biosynthetic process|calcium-dependent cell-cell adhesion|cellular calcium ion homeostasis|cellular manganese ion homeostasis|epidermis development|Golgi calcium ion homeostasis|Golgi calcium ion transport|positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi apparatus|Golgi membrane|integral to membrane|trans-Golgi network	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|manganese ion binding|manganese-transporting ATPase activity|metal ion binding|signal transducer activity			skin(1)	1					Arsenic trioxide(DB01169)|Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Miconazole(DB01110)|Sevoflurane(DB01236)	GAGATACATCCCCATCTGGAG	0.522									Hailey-Hailey_disease				6	71					0.0293803	0.029675	1	1	0	
MRPL3	11222	broad.mit.edu	37	3	131208833	131208833	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:131208833A>T	uc003eoh.2	-	5	724	c.560T>A	c.(559-561)ATT>AAT	p.I187N	MRPL3_uc011blo.1_Missense_Mutation_p.I82N|MRPL3_uc011blp.1_Missense_Mutation_p.I214N	NM_007208	NP_009139	P09001	RM03_HUMAN	mitochondrial ribosomal protein L3	187					translation	mitochondrial large ribosomal subunit	RNA binding|structural constituent of ribosome				0						ACCTGGTTTAATTGCAGCATT	0.363													12	23					0	0	1	0	0	
COPB2	9276	broad.mit.edu	37	3	139085492	139085492	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:139085492C>A	uc003etf.3	-	15	1932	c.1802G>T	c.(1801-1803)AGG>ATG	p.R601M	COPB2_uc011bmv.1_Missense_Mutation_p.R572M|COPB2_uc010hui.2_Missense_Mutation_p.R572M	NM_004766	NP_004757	P35606	COPB2_HUMAN	coatomer protein complex, subunit beta 2 (beta	601					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	protein binding|structural molecule activity			ovary(2)	2						GCTAAAGTCCCTCCGCATGAC	0.438													7	62					0.000274275	0.000283037	1	1	0	
SPSB4	92369	broad.mit.edu	37	3	140785534	140785534	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:140785534C>T	uc003ett.2	+	2	842	c.588C>T	c.(586-588)TAC>TAT	p.Y196Y	SPSB4_uc010hum.2_Silent_p.Y196Y	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	196	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						ATGGCCAGTACCTGGGCGTGG	0.632													3	23					0	0	1	0	0	
TFDP2	7029	broad.mit.edu	37	3	141688962	141688962	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:141688962C>G	uc003eun.3	-	9	1064	c.685G>C	c.(685-687)GAA>CAA	p.E229Q	TFDP2_uc003euk.3_Missense_Mutation_p.E142Q|TFDP2_uc010hur.2_Missense_Mutation_p.E169Q|TFDP2_uc003eul.3_Missense_Mutation_p.E169Q|TFDP2_uc011bnf.1_Missense_Mutation_p.E132Q|TFDP2_uc011bng.1_Missense_Mutation_p.E93Q|TFDP2_uc003eum.3_Missense_Mutation_p.E169Q	NM_006286	NP_006277	Q14188	TFDP2_HUMAN	transcription factor Dp-2 (E2F dimerization	229	Dimerization (Potential).|DCB1.				cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|transcription factor binding			kidney(1)	1						TTTATCCGTTCTATCCGCCTC	0.413													7	90					0	0	1	0	0	
P2RY14	9934	broad.mit.edu	37	3	150931878	150931878	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:150931878A>G	uc003eyr.1	-	3	705	c.227T>C	c.(226-228)TTC>TCC	p.F76S	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Missense_Mutation_p.F76S	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	76	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AAGGATCTTGAAAGGAAAAGT	0.463													17	34					0	0	1	0	0	
MED12L	116931	broad.mit.edu	37	3	151134107	151134107	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:151134107A>G	uc003eyp.2	+	41	6238	c.6200A>G	c.(6199-6201)CAG>CGG	p.Q2067R	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2067	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAGATGcagcagccccagcag	0.333													4	35					0	0	1	0	0	
IGSF10	285313	broad.mit.edu	37	3	151155816	151155816	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:151155816G>T	uc011bod.1	-	6	6533	c.6533C>A	c.(6532-6534)CCT>CAT	p.P2178H	IGSF10_uc011bob.1_Missense_Mutation_p.P205H|IGSF10_uc011boc.1_Missense_Mutation_p.P157H	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2178	Ig-like C2-type 8.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTCATTGGAAGGCAGCAACCA	0.433													4	92					0.000602214	0.000618842	1	1	0	
DHX36	170506	broad.mit.edu	37	3	154017707	154017707	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:154017707G>A	uc003ezy.3	-	12	1550	c.1469C>T	c.(1468-1470)GCG>GTG	p.A490V	DHX36_uc010hvq.2_Missense_Mutation_p.A490V|DHX36_uc003ezz.3_Missense_Mutation_p.A490V	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	490	Helicase C-terminal.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			GACCAGTATCGCACCATCCTA	0.358													8	95					0	0	1	0	0	
DHX36	170506	broad.mit.edu	37	3	154032899	154032899	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:154032899A>G	uc003ezy.3	-	3	620	c.539T>C	c.(538-540)TTA>TCA	p.L180S	DHX36_uc010hvq.2_Missense_Mutation_p.L180S|DHX36_uc003ezz.3_Missense_Mutation_p.L180S	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	180						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTTTTGGTCTAAAGTTCCATC	0.284													4	31					0	0	1	0	0	
PLCH1	23007	broad.mit.edu	37	3	155203168	155203168	+	Missense_Mutation	SNP	A	T	T	rs141197506	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:155203168A>T	uc011bok.1	-	22	3252	c.2975T>A	c.(2974-2976)ATT>AAT	p.I992N	PLCH1_uc011boj.1_Missense_Mutation_p.I992N|PLCH1_uc011bol.1_Missense_Mutation_p.I954N	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	992					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTTCCTTCAATGTCTTTTGC	0.453													7	55					0	0	1	0	0	
C3orf33	285315	broad.mit.edu	37	3	155481323	155481323	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:155481323A>C	uc003fal.1	-	6	1009	c.739T>G	c.(739-741)TTT>GTT	p.F247V	C3orf33_uc003fam.1_Missense_Mutation_p.F290V	NM_173657	NP_775928	Q96NB5	Q96NB5_HUMAN	hypothetical protein LOC285315	247							hydrolase activity, acting on ester bonds|nucleic acid binding				0			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTCTACGAAAGTTTATGCGA	0.318													6	14					0	0	1	0	0	
VEPH1	79674	broad.mit.edu	37	3	157188202	157188202	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:157188202G>T	uc003fbj.1	-	3	572	c.255C>A	c.(253-255)CTC>CTA	p.L85L	VEPH1_uc003fbk.1_Silent_p.L85L|VEPH1_uc010hvu.1_Silent_p.L85L|VEPH1_uc003fbm.2_Silent_p.L85L|VEPH1_uc003fbn.2_Silent_p.L85L	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	85						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			AGGAGTCCCAGAGCCCCACAA	0.463													6	110					0.217242	0.217624	1	1	0	
GFM1	85476	broad.mit.edu	37	3	158369926	158369926	+	Missense_Mutation	SNP	C	T	T	rs150903461		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:158369926C>T	uc003fce.2	+	6	838	c.731C>T	c.(730-732)GCG>GTG	p.A244V	GFM1_uc003fcd.2_Missense_Mutation_p.A244V|GFM1_uc003fcf.2_RNA|GFM1_uc003fcg.2_Missense_Mutation_p.A175V	NM_024996	NP_079272	Q96RP9	EFGM_HUMAN	G elongation factor, mitochondrial 1 precursor	244					mitochondrial translational elongation	mitochondrion	GTP binding|GTPase activity|translation elongation factor activity			ovary(3)|central_nervous_system(1)	4			Lung(72;0.00309)|LUSC - Lung squamous cell carcinoma(72;0.0043)			GAATTAAGGGCGGCGGCCACT	0.408													13	92					0	0	1	0	0	
SLC2A2	6514	broad.mit.edu	37	3	170725002	170725002	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:170725002C>T	uc003fhe.1	-	5	856	c.547G>A	c.(547-549)GCT>ACT	p.A183T	SLC2A2_uc003fhf.1_Missense_Mutation_p.A10T|SLC2A2_uc011bpu.1_Missense_Mutation_p.A56T	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	183	Cytoplasmic (Potential).			A -> S (in Ref. 2; BAF83535).	carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			CCCCTGAGAGCGGTTGGAGCA	0.463													13	49					0	0	1	0	0	
FNDC3B	64778	broad.mit.edu	37	3	171965347	171965347	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:171965347C>T	uc003fhy.2	+	5	461	c.289C>T	c.(289-291)CGC>TGC	p.R97C	FNDC3B_uc003fhz.3_Missense_Mutation_p.R97C|FNDC3B_uc003fia.2_Missense_Mutation_p.R28C	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	97						endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		TACTGGAGTCCGCCGGGTGGT	0.458													16	162					0	0	1	0	0	
CCDC39	339829	broad.mit.edu	37	3	180334112	180334112	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:180334112G>A	uc010hxe.2	-	19	2741	c.2626C>T	c.(2626-2628)CGT>TGT	p.R876C	CCDC39_uc003fkn.2_RNA|TTC14_uc003fkm.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	876	Ser-rich.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			GAGCTCTGACGACTGCCTTTT	0.383													14	46					0	0	1	0	0	
EIF2B5	8893	broad.mit.edu	37	3	183857942	183857942	+	Missense_Mutation	SNP	G	T	T	rs138820746		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:183857942G>T	uc003fmp.2	+	6	1204	c.840G>T	c.(838-840)GAG>GAT	p.E280D	EIF2B5_uc003fmq.2_Translation_Start_Site	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	280					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			TAGTGAATGAGGAGGTGAGAA	0.428													4	33					3.59834e-05	3.74717e-05	1	1	0	
MASP1	5648	broad.mit.edu	37	3	186978565	186978565	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:186978565C>T	uc003frh.1	-	4	843	c.511G>A	c.(511-513)GGC>AGC	p.G171S	MASP1_uc003fri.2_Missense_Mutation_p.G171S|MASP1_uc003frj.2_Missense_Mutation_p.G140S|MASP1_uc003frk.1_Missense_Mutation_p.G171S|MASP1_uc011bse.1_Missense_Mutation_p.G145S	NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	171	Interaction with FCN2.|Interaction with MBL2.|EGF-like; calcium-binding.|Homodimerization (By similarity).				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		AGGATGTAGCCGAAGCGGCAG	0.522													6	78					0	0	1	0	0	
IL1RAP	3556	broad.mit.edu	37	3	190322009	190322009	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:190322009T>G	uc003fsm.1	+	4	363	c.157T>G	c.(157-159)TTC>GTC	p.F53V	IL1RAP_uc003fsk.2_Missense_Mutation_p.F53V|IL1RAP_uc003fsl.2_Missense_Mutation_p.F53V|IL1RAP_uc010hzf.2_Intron|IL1RAP_uc010hzg.1_Missense_Mutation_p.F53V|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.F53V|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Missense_Mutation_p.F53V	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	53	Ig-like C2-type 1.|Extracellular (Potential).				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		CTTTGAACACTTCTTGAAATT	0.498													4	110					0	0	1	0	0	
ATP13A4	84239	broad.mit.edu	37	3	193158373	193158373	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:193158373A>T	uc003ftd.2	-	21	2601	c.2493T>A	c.(2491-2493)AGT>AGA	p.S831R	ATP13A4_uc003fte.1_Missense_Mutation_p.S831R|ATP13A4_uc011bsr.1_Missense_Mutation_p.S302R|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	831	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CTTCCACCAGACTGGACTTCT	0.458													8	61					0	0	1	0	0	
MUC4	4585	broad.mit.edu	37	3	195486030	195486030	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:195486030G>A	uc011bto.1	-	18	15027	c.14567C>T	c.(14566-14568)ACG>ATG	p.T4856M	MUC4_uc003fuz.2_Missense_Mutation_p.T582M|MUC4_uc003fva.2_Missense_Mutation_p.T464M|MUC4_uc003fvb.2_Missense_Mutation_p.T500M|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.T500M|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.T464M|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.T548M|MUC4_uc011bti.1_Missense_Mutation_p.T548M|MUC4_uc011btj.1_Missense_Mutation_p.T725M|MUC4_uc011btk.1_Missense_Mutation_p.T464M|MUC4_uc011btl.1_Missense_Mutation_p.T493M|MUC4_uc011btm.1_Missense_Mutation_p.T673M|MUC4_uc011btn.1_Missense_Mutation_p.T464M|MUC4_uc003fvo.2_Missense_Mutation_p.T748M|MUC4_uc003fvp.2_Missense_Mutation_p.T697M	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1741					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTCTCTGAGCGTGAAGTTGGC	0.552													50	409					0	0	1	0	0	
PAK2	5062	broad.mit.edu	37	3	196509660	196509660	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:196509660A>G	uc003fwy.3	+	2	465	c.143A>G	c.(142-144)AAG>AGG	p.K48R		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	48					axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		GAAGAGAAAAAGCCCAGGCAT	0.443													14	143					0	0	1	0	0	
MFI2	4241	broad.mit.edu	37	3	196735572	196735572	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:196735572T>C	uc003fxk.3	-	13	1819	c.1706A>G	c.(1705-1707)GAC>GGC	p.D569G		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	569	Transferrin-like 2.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		GAAGGCAACGTCACCCGCATT	0.637													5	48					0	0	1	0	0	
ZNF721	170960	broad.mit.edu	37	4	436908	436908	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:436908A>G	uc003gag.2	-	3	2039	c.1348T>C	c.(1348-1350)TGT>CGT	p.C450R	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.C482R|ZNF721_uc010ibe.2_Missense_Mutation_p.C438R	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	450						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GCTTTCCCACATTCTTTACAT	0.368													6	42					0	0	1	0	0	
PIGG	54872	broad.mit.edu	37	4	501310	501310	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:501310C>T	uc003gak.3	+	4	823	c.687C>T	c.(685-687)AGC>AGT	p.S229S	PIGG_uc003gaj.3_Silent_p.S229S|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Intron|PIGG_uc003gal.3_Silent_p.S140S|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Silent_p.S107S|PIGG_uc003gam.2_Silent_p.S140S|PIGG_uc003gan.2_Silent_p.S140S	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	229	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						GGCCCAACAGCCCCCTGATTG	0.537													4	32					0	0	1	0	0	
PCGF3	10336	broad.mit.edu	37	4	727562	727562	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:727562C>T	uc011bva.1	+	5	568	c.93C>T	c.(91-93)ACC>ACT	p.T31T	PCGF3_uc003gbc.1_RNA|PCGF3_uc003gbd.1_RNA|PCGF3_uc003gbe.2_Silent_p.T31T|PCGF3_uc010ibh.2_Silent_p.T31T|PCGF3_uc003gbg.1_5'Flank|PCGF3_uc003gbh.2_5'Flank	NM_006315	NP_006306	Q3KNV8	PCGF3_HUMAN	ring finger protein 3	31	RING-type.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex	zinc ion binding				0						CCACGGTGACCGAGTGTCTGC	0.612													5	65					0	0	1	0	0	
KIAA1530	57654	broad.mit.edu	37	4	1348977	1348977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:1348977G>A	uc003gde.3	+	7	1567	c.1120G>A	c.(1120-1122)GTA>ATA	p.V374I		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	374											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			ATTGGAGCTCGTACTGAGAAA	0.617													3	22					0	0	1	0	0	
CRIPAK	285464	broad.mit.edu	37	4	1389008	1389008	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:1389008G>A	uc003gdf.2	+	1	3669	c.709G>A	c.(709-711)GGA>AGA	p.G237R		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	237	6.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			GTGCCGATGCGGAGTGCCCGC	0.677													43	409					0	0	1	0	0	
WHSC1	7468	broad.mit.edu	37	4	1976611	1976611	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:1976611C>A	uc003gdz.3	+	19	3570	c.3394C>A	c.(3394-3396)CCC>ACC	p.P1132T	WHSC1_uc003geb.3_Missense_Mutation_p.P1132T|WHSC1_uc003gec.3_Missense_Mutation_p.P1132T|WHSC1_uc003ged.3_Missense_Mutation_p.P1132T|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Missense_Mutation_p.P351T|WHSC1_uc011bvh.1_Missense_Mutation_p.P193T|WHSC1_uc010icf.2_Missense_Mutation_p.P480T	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	1132	SET.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		AGACGCTGGCCCCAAAGGAAA	0.453			T	IGH@	MM								12	111					7.93312e-07	8.38364e-07	1	1	0	
POLN	353497	broad.mit.edu	37	4	2082734	2082734	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:2082734T>C	uc003ger.2	-	21	2338	c.2338A>G	c.(2338-2340)ATG>GTG	p.M780V	POLN_uc010icg.1_Missense_Mutation_p.M228V|POLN_uc010ich.1_3'UTR	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	780					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			ACATGGATCATGGCCAGCTTG	0.587								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					8	110					0	0	1	0	0	
FAM193A	8603	broad.mit.edu	37	4	2701952	2701952	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:2701952G>A	uc010icl.2	+	17	3531	c.3180G>A	c.(3178-3180)GCG>GCA	p.A1060A	FAM193A_uc010ick.2_Silent_p.A1260A|FAM193A_uc003gfd.2_Silent_p.A1060A|FAM193A_uc011bvm.1_Silent_p.A1082A|FAM193A_uc011bvn.1_Silent_p.A1060A|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Silent_p.A914A	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	1060										ovary(3)	3						GCGAGCCAGCGAGGAGGCCCA	0.582													8	21					0	0	1	0	0	
NOP14	8602	broad.mit.edu	37	4	2948140	2948140	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:2948140A>G	uc003ggj.1	-	11	1706	c.1634T>C	c.(1633-1635)GTG>GCG	p.V545A	C4orf10_uc003gge.1_Intron|C4orf10_uc003ggh.2_Intron|C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Missense_Mutation_p.V291A|NOP14_uc003ggk.3_Missense_Mutation_p.V545A|NOP14_uc003ggl.2_Missense_Mutation_p.V545A	NM_003703	NP_003694	P78316	NOP14_HUMAN	probable nucleolar complex protein 14	545					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	mitochondrion|Noc4p-Nop14p complex|small-subunit processome	snoRNA binding			pancreas(1)	1						TCTGCTTACCACATCCAACCC	0.522													10	129					0	0	1	0	0	
EVC2	132884	broad.mit.edu	37	4	5687115	5687115	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:5687115G>T	uc003gij.2	-	6	852	c.798C>A	c.(796-798)ACC>ACA	p.T266T	EVC2_uc011bwb.1_5'UTR|EVC2_uc003gik.2_Silent_p.T186T	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	266						integral to membrane				large_intestine(3)|ovary(2)	5						AGCTCTGAAAGGTGAGTTGGG	0.532													8	122					0.00621372	0.00632454	1	1	0	
MAN2B2	23324	broad.mit.edu	37	4	6619137	6619137	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:6619137G>A	uc003gjf.1	+	17	2768	c.2732G>A	c.(2731-2733)CGC>CAC	p.R911H	MAN2B2_uc003gje.1_Missense_Mutation_p.R911H|MAN2B2_uc011bwf.1_Missense_Mutation_p.R860H	NM_015274	NP_056089	Q9Y2E5	MA2B2_HUMAN	mannosidase, alpha, class 2B, member 2	911					mannose metabolic process	extracellular region	alpha-mannosidase activity|carbohydrate binding|zinc ion binding			ovary(2)	2						GCTGACCTCCGCCGTGTCCTG	0.597													26	72					0	0	1	0	0	
CCDC96	257236	broad.mit.edu	37	4	7043253	7043253	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:7043253G>A	uc003gjv.2	-	1	1476	c.1413C>T	c.(1411-1413)GCC>GCT	p.A471A	TADA2B_uc003gjw.3_5'Flank|TADA2B_uc010idi.2_5'Flank	NM_153376	NP_699207	Q2M329	CCD96_HUMAN	coiled-coil domain containing 96	471											0						TTCCTAGGGCGGCCTGGGCCT	0.547													70	176					0	0	1	0	0	
SH3TC1	54436	broad.mit.edu	37	4	8229226	8229226	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:8229226C>T	uc003gkv.3	+	12	1906	c.1805C>T	c.(1804-1806)GCT>GTT	p.A602V	SH3TC1_uc003gkw.3_Missense_Mutation_p.A526V|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	602	TPR 2.						binding			large_intestine(2)|pancreas(1)	3						CTAGTGGTGGCTGTGTACGCC	0.637													31	96					0	0	1	0	0	
LDB2	9079	broad.mit.edu	37	4	16590355	16590355	+	Missense_Mutation	SNP	G	A	A	rs138524887		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:16590355G>A	uc003goz.2	-	4	825	c.509C>T	c.(508-510)CCG>CTG	p.P170L	LDB2_uc003gpa.2_Missense_Mutation_p.P170L|LDB2_uc003gpb.2_Missense_Mutation_p.P170L|LDB2_uc011bxh.1_Missense_Mutation_p.P170L|LDB2_uc010iee.2_Missense_Mutation_p.P170L|LDB2_uc003goy.2_Missense_Mutation_p.P46L|LDB2_uc011bxi.1_Missense_Mutation_p.P46L	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	170							LIM domain binding|transcription cofactor activity				0						GATGCTTCTCGGGACTAACTC	0.393													9	91					0	0	1	0	0	
LCORL	254251	broad.mit.edu	37	4	17964593	17964593	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:17964593A>G	uc003gpq.2	-	3	311	c.300T>C	c.(298-300)AGT>AGC	p.S100S	LCORL_uc011bxk.1_Intron	NM_153686	NP_710153	Q8N3X6	LCORL_HUMAN	ligand dependent nuclear receptor	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						TAAAACTTACACTGACTGCTT	0.313													3	62					0	0	1	0	0	
GPR125	166647	broad.mit.edu	37	4	22422539	22422539	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:22422539A>G	uc003gqm.1	-	12	2044	c.1779T>C	c.(1777-1779)GTT>GTC	p.V593V	GPR125_uc010ieo.1_Silent_p.V467V|GPR125_uc003gqn.1_Silent_p.V367V|GPR125_uc003gqo.2_Silent_p.V593V	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	593	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				ATGTATTTGAAACATTGCACT	0.418													22	251					0	0	1	0	0	
PPARGC1A	10891	broad.mit.edu	37	4	23831131	23831131	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:23831131A>G	uc003gqs.2	-	4	627	c.507T>C	c.(505-507)CAT>CAC	p.H169H	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	169					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				TGTGATTTGCATGGTTCTGGG	0.403													6	59					0	0	1	0	0	
KLF3	51274	broad.mit.edu	37	4	38696378	38696378	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:38696378C>T	uc003gth.3	+	5	1039	c.707C>T	c.(706-708)TCG>TTG	p.S236L		NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	236	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						AATCACCCTTCGGTCATCGTG	0.463													9	143					0	0	1	0	0	
TMEM156	80008	broad.mit.edu	37	4	38990475	38990475	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:38990475C>T	uc003gto.2	-	4	843	c.735G>A	c.(733-735)TGG>TGA	p.W245*	TMEM156_uc010ifj.2_Nonsense_Mutation_p.W245*	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	245	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						ACTTACTCTGCCACTTTTGCA	0.313													50	146					0	0	1	0	0	
RBM47	54502	broad.mit.edu	37	4	40428030	40428030	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:40428030T>C	uc003gvc.2	-	7	2383	c.1673A>G	c.(1672-1674)AAC>AGC	p.N558S	RBM47_uc003gvd.2_Missense_Mutation_p.N489S|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.N520S	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	558	Ala-rich.					nucleus	nucleotide binding|RNA binding			breast(3)	3						GGCTGCCGCGTTCTTCTGTAG	0.597													7	70					0	0	1	0	0	
LIMCH1	22998	broad.mit.edu	37	4	41694373	41694373	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:41694373C>T	uc003gvu.3	+	26	3252	c.3198C>T	c.(3196-3198)AAC>AAT	p.N1066N	LIMCH1_uc003gvv.3_Silent_p.N1040N|LIMCH1_uc003gvw.3_Silent_p.N1039N|LIMCH1_uc003gvx.3_Silent_p.N1052N|LIMCH1_uc003gwe.3_Silent_p.N963N|LIMCH1_uc003gvy.3_Silent_p.N868N|LIMCH1_uc003gwa.3_Silent_p.N880N|LIMCH1_uc003gvz.3_Silent_p.N1450N|LIMCH1_uc011byu.1_Silent_p.N899N|LIMCH1_uc003gwc.3_Silent_p.N885N|LIMCH1_uc003gwd.3_Silent_p.N873N|LIMCH1_uc011byv.1_Silent_p.N816N|LIMCH1_uc011byw.1_Silent_p.N339N|LIMCH1_uc010ifv.2_5'Flank	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	1066	LIM zinc-binding.				actomyosin structure organization		actin binding|zinc ion binding	p.N1066H(1)		ovary(2)|pancreas(1)|skin(1)	4						GTCTCCTGAACTGTAATGATT	0.438													6	98					0	0	1	0	0	
SRP72	6731	broad.mit.edu	37	4	57340534	57340534	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:57340534T>C	uc003hbv.2	+	5	627	c.587T>C	c.(586-588)ATG>ACG	p.M196T	SRP72_uc010ihe.2_Missense_Mutation_p.M196T|SRP72_uc003hbw.1_Missense_Mutation_p.M1T	NM_006947	NP_008878	O76094	SRP72_HUMAN	signal recognition particle 72kDa	196					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|nucleolus|plasma membrane|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding			ovary(1)	1	Glioma(25;0.08)|all_neural(26;0.101)					AACCAGGCCATGAAAATCCTA	0.433													10	62					0	0	1	0	0	
RUFY3	22902	broad.mit.edu	37	4	71588444	71588444	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:71588444C>T	uc003hfq.2	+	1	749	c.154C>T	c.(154-156)CCT>TCT	p.P52S	RUFY3_uc003hfp.3_Intron|RUFY3_uc011cax.1_Missense_Mutation_p.P52S|RUFY3_uc003hfr.2_Missense_Mutation_p.P52S	NM_014961	NP_055776	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 2	52					negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			CTCACTTACACCTGACCCAGA	0.537													6	100					0	0	1	0	0	
ANKRD17	26057	broad.mit.edu	37	4	73943097	73943097	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:73943097C>T	uc003hgp.2	-	32	7679	c.7562G>A	c.(7561-7563)GGC>GAC	p.G2521D	ANKRD17_uc003hgo.2_Missense_Mutation_p.G2408D|ANKRD17_uc003hgq.2_Missense_Mutation_p.G2270D|ANKRD17_uc003hgr.2_Missense_Mutation_p.G2520D	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2521					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GTCCATGTAGCCTGCAGGAAC	0.393													6	104					0	0	1	0	0	
MTHFD2L	441024	broad.mit.edu	37	4	75065537	75065537	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:75065537A>G	uc003hhn.1	+	7	822	c.304A>G	c.(304-306)AAT>GAT	p.N102D	MTHFD2L_uc011cbj.1_Missense_Mutation_p.N102D|MTHFD2L_uc011cbk.1_Missense_Mutation_p.N160D	NM_001144978	NP_001138450	Q9H903	MTD2L_HUMAN	methylenetetrahydrofolate dehydrogenase 2-like	102					folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process		binding|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2			all cancers(17;0.0101)|Lung(101;0.196)			AACAATATGCAATGGAATTGC	0.323													11	88					0	0	1	0	0	
KLHL8	57563	broad.mit.edu	37	4	88116474	88116474	+	Splice_Site	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:88116474A>G	uc011cdb.1	-	2	601	c.216_splice	c.e2+1	p.K72_splice	KLHL8_uc003hql.1_Splice_Site_p.K72_splice|KLHL8_uc003hqm.1_Splice_Site_p.K72_splice|KLHL8_uc003hqn.1_Splice_Site_p.K72_splice|KLHL8_uc010ikj.1_Splice_Site	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8												0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		AGGCAATCTCACCTTGAGTGT	0.353													7	25					0	0	1	0	0	
SPARCL1	8404	broad.mit.edu	37	4	88403698	88403698	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:88403698T>C	uc010ikm.2	-	9	2118	c.1546A>G	c.(1546-1548)ACG>GCG	p.T516A	SPARCL1_uc011cdc.1_Missense_Mutation_p.T391A|SPARCL1_uc003hqs.3_Missense_Mutation_p.T516A|SPARCL1_uc011cdd.1_Missense_Mutation_p.T391A	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	516					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TCAAAGTCCGTACAAGTAGGA	0.413													5	57					0	0	1	0	0	
SPARCL1	8404	broad.mit.edu	37	4	88411935	88411935	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:88411935G>T	uc010ikm.2	-	7	1959	c.1387C>A	c.(1387-1389)CCT>ACT	p.P463T	SPARCL1_uc011cdc.1_Missense_Mutation_p.P338T|SPARCL1_uc003hqs.3_Missense_Mutation_p.P463T|SPARCL1_uc011cdd.1_Missense_Mutation_p.P338T	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	463	Kazal-like.				signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		TTTGTTGGAGGACAAGTCACT	0.408													9	82					1.58986e-06	1.67808e-06	1	1	0	
FAM190A	401145	broad.mit.edu	37	4	91230124	91230124	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:91230124G>T	uc003hsv.3	+	2	1029	c.689G>T	c.(688-690)TGT>TTT	p.C230F	FAM190A_uc003hsu.3_Missense_Mutation_p.C230F|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.C230F	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	230										large_intestine(1)|ovary(1)	2						TCGCCATCCTGTTCTGTGGAT	0.433													11	14					3.86212e-05	4.01942e-05	1	1	0	
C4orf37	285555	broad.mit.edu	37	4	98762072	98762072	+	Silent	SNP	C	T	T	rs149484886	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:98762072C>T	uc003htt.1	-	9	1146	c.1056G>A	c.(1054-1056)GCG>GCA	p.A352A		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	352											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		AGCTGCCTGGCGCTGGAATAA	0.348													6	45					0	0	1	0	0	
ADH4	127	broad.mit.edu	37	4	100065369	100065369	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:100065369C>A	uc003hun.2	-	1	81	c.5G>T	c.(4-6)GGC>GTC	p.G2V	uc003hum.1_Intron|ADH4_uc011ced.1_5'UTR	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	2					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	GCCCTTGGTGCCCATTTTTCT	0.418													7	77					2.17888e-05	2.27731e-05	1	1	0	
PPP3CA	5530	broad.mit.edu	37	4	101947156	101947156	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:101947156G>A	uc011cen.1	-	14	2107	c.1432C>T	c.(1432-1434)CGA>TGA	p.R478*	PPP3CA_uc003hvu.2_Nonsense_Mutation_p.R468*|PPP3CA_uc010ilj.2_Nonsense_Mutation_p.R426*|PPP3CA_uc003hvt.2_Nonsense_Mutation_p.R455*|PPP3CA_uc003hvs.2_Nonsense_Mutation_p.R411*|PPP3CA_uc010ilk.2_Nonsense_Mutation_p.R246*	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	478	Inhibitory domain.				protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		TCATTAATTCGGTCTAAGCCC	0.453													6	80					0	0	1	0	0	
PPA2	27068	broad.mit.edu	37	4	106367600	106367600	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:106367600G>A	uc003hxl.2	-	5	401	c.381C>T	c.(379-381)CGC>CGT	p.R127R	PPA2_uc003hxm.2_Silent_p.R109R|PPA2_uc003hxn.2_Silent_p.R127R|PPA2_uc003hxo.2_Intron|PPA2_uc003hxp.2_Intron|PPA2_uc003hxq.2_Silent_p.R34R|PPA2_uc003hxr.2_Silent_p.R34R|PPA2_uc011cfa.1_Silent_p.R34R	NM_176869	NP_789845	Q9H2U2	IPYR2_HUMAN	inorganic pyrophosphatase 2 isoform 1 precursor	127					diphosphate metabolic process|tRNA aminoacylation for protein translation	mitochondrial matrix	inorganic diphosphatase activity|magnesium ion binding			pancreas(1)	1		Myeloproliferative disorder(5;0.0255)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.03e-07)		TCGCCACATAGCGTAGCTTTC	0.388													38	80					0	0	1	0	0	
TBCK	93627	broad.mit.edu	37	4	106967771	106967771	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:106967771T>C	uc010ilv.2	-	26	3003	c.2638A>G	c.(2638-2640)ATA>GTA	p.I880V	TBCK_uc003hyb.2_Missense_Mutation_p.I623V|TBCK_uc003hye.2_Missense_Mutation_p.I841V|TBCK_uc003hyc.2_Missense_Mutation_p.I817V|TBCK_uc003hyd.2_Missense_Mutation_p.I708V|TBCK_uc003hyf.2_Missense_Mutation_p.I880V	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	880	Rhodanese.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						GTTGGCTTTATTTTATTAATG	0.403													3	57					0	0	1	0	0	
PITX2	5308	broad.mit.edu	37	4	111554122	111554122	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:111554122C>T	uc003iad.2	-	2	615	c.33G>A	c.(31-33)GCG>GCA	p.A11A	PITX2_uc003iae.2_Silent_p.A11A|PITX2_uc010iml.2_Translation_Start_Site|PITX2_uc003iaf.2_Silent_p.A11A	NM_153426	NP_700475	Q99697	PITX2_HUMAN	paired-like homeodomain transcription factor 2	11					determination of left/right symmetry|organ morphogenesis	transcription factor complex	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription factor binding				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00222)		ATTGCACACACGCCGACACCA	0.632													43	143					0	0	1	0	0	
EXOSC9	5393	broad.mit.edu	37	4	122728764	122728764	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:122728764T>G	uc003iea.2	+	6	700	c.592T>G	c.(592-594)TTT>GTT	p.F198V	EXOSC9_uc003idz.2_Missense_Mutation_p.F198V|EXOSC9_uc003ieb.2_Missense_Mutation_p.F182V|EXOSC9_uc010inp.1_RNA	NM_005033	NP_005024	Q06265	EXOS9_HUMAN	exosome component 9 isoform 2	198	ARE binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|immune response|nuclear mRNA surveillance|nuclear polyadenylation-dependent rRNA catabolic process|positive regulation of cell growth|rRNA processing	cytosol|nuclear exosome (RNase complex)|nucleolus|nucleolus|nucleus	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0						CAGTTTTGCCTTTTTCCAGCA	0.358													12	97					0	0	1	0	0	
BBS7	55212	broad.mit.edu	37	4	122782657	122782657	+	Splice_Site	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:122782657A>G	uc003ied.2	-	4	515	c.341_splice	c.e4+1	p.M114_splice	BBS7_uc003iee.1_Splice_Site_p.M114_splice|BBS7_uc010inq.1_Missense_Mutation_p.Y71H	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a						cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						CAAAAGACATACATAGCTTTA	0.313									Bardet-Biedl_syndrome				15	45					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123122208	123122208	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:123122208G>A	uc003ieh.2	+	13	1470	c.1425G>A	c.(1423-1425)CAG>CAA	p.Q475Q	KIAA1109_uc003iei.1_Silent_p.Q229Q|KIAA1109_uc010ins.1_5'UTR	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	475					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ACATGCCGCAGACATGGCAGT	0.368													4	80					0	0	1	0	0	
FAT4	79633	broad.mit.edu	37	4	126242390	126242390	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:126242390T>C	uc003ifj.3	+	1	4824	c.4824T>C	c.(4822-4824)CCT>CCC	p.P1608P		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1608	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACCTTGGGCCTGAAAGGAGGA	0.433													30	76					0	0	1	0	0	
SLC25A31	83447	broad.mit.edu	37	4	128694557	128694557	+	Missense_Mutation	SNP	G	T	T	rs139552475	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:128694557G>T	uc003ifl.2	+	6	922	c.776G>T	c.(775-777)CGG>CTG	p.R259L		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	259	Solcar 3.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GAGGCTAAACGGCAATATAAA	0.373													3	52					0.000602214	0.000618842	1	1	0	
C4orf33	132321	broad.mit.edu	37	4	130023786	130023786	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:130023786C>T	uc003igu.3	+	2	385	c.21C>T	c.(19-21)CAC>CAT	p.H7H	C4orf33_uc010ioc.1_Silent_p.H7H|C4orf33_uc010iod.2_Silent_p.H7H	NM_173487	NP_775758	Q8N1A6	CD033_HUMAN	hypothetical protein LOC132321	7										upper_aerodigestive_tract(1)	1						AAATTGAACACACTTGGGATG	0.353													6	87					0	0	1	0	0	
SLC7A11	23657	broad.mit.edu	37	4	139140496	139140496	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:139140496C>T	uc011chb.1	-	5	950	c.670G>A	c.(670-672)GCC>ACC	p.A224T		NM_014331	NP_055146	Q9UPY5	XCT_HUMAN	solute carrier family 7, (cationic amino acid	224	Extracellular (Potential).				blood coagulation|cellular nitrogen compound metabolic process|leukocyte migration|response to toxin	integral to membrane|plasma membrane	cystine:glutamate antiporter activity|protein binding			skin(1)	1	all_hematologic(180;0.166)				L-Cystine(DB00138)|L-Glutamic Acid(DB00142)|Sulfasalazine(DB00795)	CCTGAAAAGGCGTCTTTAAAG	0.388													4	72					0	0	1	0	0	
TBC1D9	23158	broad.mit.edu	37	4	141598177	141598177	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:141598177G>A	uc010ioj.2	-	6	1202	c.930C>T	c.(928-930)CAC>CAT	p.H310H		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	310	GRAM 2.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TGCAGTCTGTGTGGCCATCTA	0.428													11	111					0	0	1	0	0	
ZNF827	152485	broad.mit.edu	37	4	146770621	146770621	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:146770621G>T	uc003ikn.2	-	6	2122	c.2074C>A	c.(2074-2076)CGG>AGG	p.R692R	ZNF827_uc003ikm.2_Silent_p.R692R|ZNF827_uc010iox.2_Silent_p.R342R	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	692					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					CCAACATTCCGGCTGGGTGAT	0.502													3	111					0.150653	0.151361	1	1	0	
NR3C2	4306	broad.mit.edu	37	4	149356545	149356545	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:149356545G>T	uc003ilj.3	-	2	1802	c.1468C>A	c.(1468-1470)CCA>ACA	p.P490T	NR3C2_uc003ilk.3_Missense_Mutation_p.P490T|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	490	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATACCCACTGGGAATCCGCTG	0.458													6	81					2.0095e-06	2.11708e-06	1	1	0	
NR3C2	4306	broad.mit.edu	37	4	149357244	149357244	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:149357244C>T	uc003ilj.3	-	2	1103	c.769G>A	c.(769-771)GTG>ATG	p.V257M	NR3C2_uc003ilk.3_Missense_Mutation_p.V257M|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	257	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GGAGAGCCCACATTGCTAGCA	0.512													6	89					0	0	1	0	0	
FHDC1	85462	broad.mit.edu	37	4	153895835	153895835	+	Silent	SNP	C	T	T	rs142902459	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:153895835C>T	uc003inf.2	+	11	1467	c.1392C>T	c.(1390-1392)CAC>CAT	p.H464H		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	464	FH2.				actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					AGGACAACCACGACCGGGAGG	0.597													7	28					0	0	1	0	0	
KIAA0922	23240	broad.mit.edu	37	4	154507424	154507424	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:154507424C>T	uc003inm.3	+	14	1424	c.1372C>T	c.(1372-1374)CTT>TTT	p.L458F	KIAA0922_uc010ipp.2_Missense_Mutation_p.L459F|KIAA0922_uc010ipq.2_Missense_Mutation_p.L311F|KIAA0922_uc010ips.1_Missense_Mutation_p.L70F	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	458	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TTCTTTGAAACTTGCTGTTAA	0.333													17	55					0	0	1	0	0	
GUCY1A3	2982	broad.mit.edu	37	4	156651343	156651343	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:156651343G>A	uc003iov.2	+	11	2569	c.2033G>A	c.(2032-2034)GGC>GAC	p.G678D	GUCY1A3_uc003iow.2_Missense_Mutation_p.G678D|GUCY1A3_uc010iqd.2_Missense_Mutation_p.G677D|GUCY1A3_uc003iox.2_Missense_Mutation_p.G678D|GUCY1A3_uc003ioz.2_Missense_Mutation_p.G443D|GUCY1A3_uc003ioy.2_Missense_Mutation_p.G678D|GUCY1A3_uc010iqe.2_Missense_Mutation_p.G443D|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.G678D	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	678				GNANFLGKASGID -> ASQFFRQSIRNRLATYIPIYKSLG FDSLKMCRASESTLGIVDG (in Ref. 1; CAA47145).	blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GTGGAAGATGGCAATGCCAAT	0.393													9	65					0	0	1	0	0	
GUCY1B3	2983	broad.mit.edu	37	4	156721176	156721176	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:156721176G>A	uc003ipc.2	+	9	1292	c.1125G>A	c.(1123-1125)AGG>AGA	p.R375R	GUCY1B3_uc011cio.1_Silent_p.R397R|GUCY1B3_uc011cip.1_Silent_p.R355R|GUCY1B3_uc003ipd.2_Silent_p.R303R|GUCY1B3_uc010iqf.2_Silent_p.R375R|GUCY1B3_uc010iqg.2_Silent_p.R303R|GUCY1B3_uc011ciq.1_Silent_p.R303R	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	375					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		TCACTGACAGGCTACAGCTCA	0.433													5	39					0	0	1	0	0	
SPOCK3	50859	broad.mit.edu	37	4	167675864	167675864	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:167675864G>T	uc003iri.1	-	9	876	c.735C>A	c.(733-735)ATC>ATA	p.I245I	SPOCK3_uc011cjp.1_Silent_p.I202I|SPOCK3_uc011cjq.1_Silent_p.I254I|SPOCK3_uc011cjr.1_Silent_p.I125I|SPOCK3_uc003irj.1_Silent_p.I242I|SPOCK3_uc011cjs.1_Silent_p.I194I|SPOCK3_uc011cjt.1_Silent_p.I153I|SPOCK3_uc011cju.1_Silent_p.I138I|SPOCK3_uc011cjv.1_Silent_p.I147I|SPOCK3_uc003irk.3_Silent_p.I242I	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	245					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		AAATTGGCAAGATGCTGGTAT	0.383													29	71					7.63505e-26	8.41674e-26	1	1	0	
FBXO8	26269	broad.mit.edu	37	4	175160171	175160171	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:175160171A>G	uc003itp.2	-	5	1596	c.746T>C	c.(745-747)TTA>TCA	p.L249S	FBXO8_uc003itq.2_Missense_Mutation_p.L208S	NM_012180	NP_036312	Q9NRD0	FBX8_HUMAN	F-box only protein 8	249	SEC7.				regulation of ARF protein signal transduction|ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ARF guanyl-nucleotide exchange factor activity			breast(2)	2		Prostate(90;0.00201)|Melanoma(52;0.012)|Renal(120;0.0183)|all_neural(102;0.0887)|all_hematologic(60;0.107)		all cancers(43;7.29e-18)|Epithelial(43;1.85e-15)|OV - Ovarian serous cystadenocarcinoma(60;5.62e-09)|GBM - Glioblastoma multiforme(59;0.00115)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.1)		TTCTCGCATTAAATCAGGGTT	0.378													4	44					0	0	1	0	0	
KIAA1712	80817	broad.mit.edu	37	4	175229932	175229932	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:175229932A>G	uc003itr.2	+	7	1014	c.600A>G	c.(598-600)GCA>GCG	p.A200A	KIAA1712_uc010iro.2_Silent_p.A200A|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	200						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		TTAATGAAGCAGTTGATGTGT	0.358													6	50					0	0	1	0	0	
STOX2	56977	broad.mit.edu	37	4	184932048	184932048	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:184932048C>T	uc003ivz.1	+	3	3492	c.2057C>T	c.(2056-2058)GCC>GTC	p.A686V	STOX2_uc003iwa.1_Missense_Mutation_p.A375V	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	686					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		CACCATGGTGCCGAGCCCAGC	0.567													5	19					0	0	1	0	0	
TLR3	7098	broad.mit.edu	37	4	186997812	186997812	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:186997812C>T	uc003iyq.2	+	2	140	c.39C>T	c.(37-39)GGC>GGT	p.G13G		NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	13					activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TTTGGGGGGGCCTTTTGCCCT	0.463													32	54					0	0	1	0	0	
KLKB1	3818	broad.mit.edu	37	4	187158011	187158011	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:187158011A>C	uc003iyy.2	+	5	476	c.405A>C	c.(403-405)GAA>GAC	p.E135D	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.E97D	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	135	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GCAGTGTTGAAGAATGCCAAA	0.398													8	68					0	0	1	0	0	
SDHA	6389	broad.mit.edu	37	5	228384	228384	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:228384G>A	uc003jao.3	+	6	821	c.706G>A	c.(706-708)GCA>ACA	p.A236T	SDHA_uc003jan.2_Missense_Mutation_p.A236T|SDHA_uc011clv.1_Missense_Mutation_p.A236T|SDHA_uc011clw.1_Missense_Mutation_p.A188T|SDHA_uc003jap.3_Missense_Mutation_p.A236T|SDHA_uc003jaq.3_Missense_Mutation_p.A11T|SDHA_uc003jar.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	236					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	TGGTGTCATCGCACTGTGCAT	0.428									Familial_Paragangliomas				5	68					0	0	1	0	0	
SLC6A18	348932	broad.mit.edu	37	5	1235625	1235625	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:1235625G>A	uc003jby.1	+	4	592	c.469G>A	c.(469-471)GCC>ACC	p.A157T		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	157	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGGCAGCAGCGCCGTGAGCTA	0.607													12	27					0	0	1	0	0	
CLPTM1L	81037	broad.mit.edu	37	5	1318500	1318500	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:1318500G>A	uc003jch.2	-	17	1647	c.1601C>T	c.(1600-1602)GCG>GTG	p.A534V	CLPTM1L_uc003jcg.2_Missense_Mutation_p.A365V	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	534	Cytoplasmic (Potential).				apoptosis	integral to membrane		p.A534A(1)		breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		CGTGTGGGGCGCCCGCGTGGC	0.527													4	66					0	0	1	0	0	
DNAH5	1767	broad.mit.edu	37	5	13901461	13901461	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:13901461A>G	uc003jfd.2	-	14	1994	c.1952T>C	c.(1951-1953)CTA>CCA	p.L651P		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	651	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGCCGTGCTTAGCACAGCTGG	0.557									Kartagener_syndrome				9	29					0	0	1	0	0	
MYO10	4651	broad.mit.edu	37	5	16670981	16670981	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:16670981G>A	uc003jft.3	-	39	6005	c.5537C>T	c.(5536-5538)GCT>GTT	p.A1846V	MYO10_uc011cnb.1_Missense_Mutation_p.A475V|MYO10_uc011cnc.1_Missense_Mutation_p.A725V|MYO10_uc011cnd.1_Missense_Mutation_p.A1203V|MYO10_uc011cne.1_Missense_Mutation_p.A1203V|MYO10_uc010itx.2_Missense_Mutation_p.A1468V	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1846	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						TGGGATGGCAGCGTGCAGAGT	0.562													6	30					0	0	1	0	0	
CDH10	1008	broad.mit.edu	37	5	24509701	24509701	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:24509701G>A	uc003jgr.1	-	7	1562	c.1230C>T	c.(1228-1230)GAC>GAT	p.D410D	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	410	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TAGAATCTGGGTCCCTTGCCA	0.308										HNSCC(23;0.051)			15	31					0	0	1	0	0	
NIPBL	25836	broad.mit.edu	37	5	36985317	36985317	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:36985317T>A	uc003jkl.3	+	10	2534	c.2035T>A	c.(2035-2037)TCT>ACT	p.S679T	NIPBL_uc003jkk.3_Missense_Mutation_p.S679T|NIPBL_uc003jkm.1_Missense_Mutation_p.S558T	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	679					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AAATAGACTGTCTGACACAAA	0.398													17	42					0	0	1	0	0	
FYB	2533	broad.mit.edu	37	5	39203057	39203057	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:39203057C>T	uc003jls.2	-	1	73	c.6G>A	c.(4-6)GCG>GCA	p.A2A	FYB_uc003jlt.2_Silent_p.A2A|FYB_uc003jlu.2_Silent_p.A2A|FYB_uc011cpl.1_Silent_p.A12A	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	2					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TGTTATATTTCGCCATGAGGG	0.433													26	56					0	0	1	0	0	
C9	735	broad.mit.edu	37	5	39311417	39311417	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:39311417G>A	uc003jlv.3	-	7	1022	c.933C>T	c.(931-933)CGC>CGT	p.R311R		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	311	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GCACAACATCGCGATTTCTCA	0.368													23	41					0	0	1	0	0	
C6	729	broad.mit.edu	37	5	41149541	41149541	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:41149541C>T	uc003jmk.2	-	17	2635	c.2425G>A	c.(2425-2427)GAT>AAT	p.D809N	C6_uc003jml.1_Missense_Mutation_p.D809N	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	809	C5b-binding domain.|Complement control factor I module 1.|Kazal-like 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GTAAAGTAATCGTTGGAGTCT	0.423													45	118					0	0	1	0	0	
PAIP1	10605	broad.mit.edu	37	5	43556011	43556011	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:43556011A>G	uc003job.2	-	2	603	c.356T>C	c.(355-357)GTT>GCT	p.V119A	PAIP1_uc003joa.2_Missense_Mutation_p.V40A|PAIP1_uc010ivp.2_Missense_Mutation_p.V40A|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.V7A	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	119	PABPC1-interacting motif-2 (PAM2).				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					AGGAGCTACAACCACCTGGGG	0.468													18	255					0	0	1	0	0	
ITGA1	3672	broad.mit.edu	37	5	52227966	52227966	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:52227966G>T	uc003jou.2	+	22	2913	c.2861G>T	c.(2860-2862)AGC>ATC	p.S954I	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Missense_Mutation_p.S485I	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	954	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				CAGTTTTACAGGTAGGAGAAA	0.259													11	17					0.0809354	0.0816989	1	1	0	
CCNO	10309	broad.mit.edu	37	5	54527333	54527333	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:54527333T>C	uc003jpw.2	-	3	1080	c.923A>G	c.(922-924)CAC>CGC	p.H308R	CCNO_uc003jpv.2_RNA	NM_021147	NP_066970	P22674	CCNO_HUMAN	cyclin domain containing	308					cell cycle|cell division|depyrimidination|regulation of cyclin-dependent protein kinase activity	nucleoplasm	protein kinase binding|uracil DNA N-glycosylase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0735)|Prostate(74;0.183)	LUSC - Lung squamous cell carcinoma(15;0.142)|Lung(15;0.161)			CGCCTCCGGGTGGTCTCCCAG	0.637													7	59					0	0	1	0	0	
OCLN	4950	broad.mit.edu	37	5	68805354	68805354	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:68805354C>T	uc003jwu.2	+	3	873	c.437C>T	c.(436-438)GCC>GTC	p.A146V	OCLN_uc003jwv.3_Missense_Mutation_p.A146V	NM_002538	NP_002529			occludin												0		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GCCATGGCTGCCTTTTGTTTC	0.363													6	86					0	0	1	0	0	
MSH3	4437	broad.mit.edu	37	5	79968069	79968069	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:79968069G>A	uc003kgz.2	+	5	1052	c.799G>A	c.(799-801)GCC>ACC	p.A267T		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	267	Interaction with EXO1.				maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		ttaGATTGCAGCCCGAGAGCT	0.274								MMR					3	59					0	0	1	0	0	
CKMT2	1160	broad.mit.edu	37	5	80548680	80548680	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:80548680G>T	uc003khc.3	+	4	561	c.319G>T	c.(319-321)GGC>TGC	p.G107C	RNU5E_uc011cto.1_Intron|CKMT2_uc010jaq.2_Missense_Mutation_p.G107C|CKMT2_uc003khd.3_Missense_Mutation_p.G107C|uc003khe.1_Intron|uc003khf.1_Intron|uc003khg.1_Intron	NM_001825	NP_001816	P17540	KCRS_HUMAN	sarcomeric mitochondrial creatine kinase	107	Phosphagen kinase N-terminal.				creatine metabolic process|muscle contraction	mitochondrial inner membrane	ATP binding|creatine kinase activity				0		Lung NSC(167;0.00475)|all_lung(232;0.00502)|Ovarian(174;0.0336)		OV - Ovarian serous cystadenocarcinoma(54;2.29e-44)|Epithelial(54;1.05e-38)|all cancers(79;4.15e-34)	Creatine(DB00148)	AAAGACTGTGGGCATGGTGGC	0.557													14	138					1.37522e-17	1.50536e-17	1	1	0	
GPR98	84059	broad.mit.edu	37	5	89989724	89989724	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:89989724G>A	uc003kju.2	+	33	7247	c.7151G>A	c.(7150-7152)CGG>CAG	p.R2384Q	GPR98_uc003kjt.2_Missense_Mutation_p.R90Q|GPR98_uc003kjv.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2384	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CACTTTGGTCGGCTGTTGTTG	0.428													3	16					0	0	1	0	0	
ANKRD32	84250	broad.mit.edu	37	5	94030643	94030643	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:94030643A>G	uc003kkr.3	+	21	2883	c.2803A>G	c.(2803-2805)ACA>GCA	p.T935A	ANKRD32_uc003kks.2_Missense_Mutation_p.T299A	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	935										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		AATAGAAGATACAGTGGAGAA	0.358													8	74					0	0	1	0	0	
TTC37	9652	broad.mit.edu	37	5	94872520	94872520	+	Splice_Site	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:94872520C>T	uc003klb.2	-	10	1021	c.751_splice	c.e10+1	p.G251_splice	TTC37_uc010jbf.1_Splice_Site_p.G203_splice	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37								binding			ovary(3)|pancreas(1)	4						GAAGAAATTACCTGATTCAAT	0.343													15	210					0	0	1	0	0	
ERAP2	64167	broad.mit.edu	37	5	96224907	96224907	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:96224907C>A	uc003kmq.2	+	5	1578	c.868C>A	c.(868-870)CCA>ACA	p.P290T	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.P290T|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.P239T|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	290	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		CTATGCATCCCCAGACAAACG	0.408													7	63					0.0293803	0.029675	1	1	0	
SLCO4C1	353189	broad.mit.edu	37	5	101583012	101583012	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:101583012A>G	uc003knm.2	-	10	2042	c.1755T>C	c.(1753-1755)TTT>TTC	p.F585F		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	585	Helical; Name=10; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TAATTACAATAAAGAAAATGC	0.363													9	89					0	0	1	0	0	
MAN2A1	4124	broad.mit.edu	37	5	109103321	109103321	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:109103321T>C	uc003kou.1	+	6	1884	c.921T>C	c.(919-921)TCT>TCC	p.S307S		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	307	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		CTGGACTTTCTCACATGCTTA	0.428													35	126					0	0	1	0	0	
MCC	4163	broad.mit.edu	37	5	112399756	112399756	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:112399756C>T	uc003kqj.3	-	12	2098	c.1568G>A	c.(1567-1569)AGC>AAC	p.S523N	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.S713N|MCC_uc011cwb.1_Missense_Mutation_p.S523N	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	523					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		TCCCCCACAGCTGCCGTCCAG	0.612													8	60					0	0	1	0	0	
SEMA6A	57556	broad.mit.edu	37	5	115803293	115803293	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:115803293T>C	uc010jck.2	-	18	2589	c.1880A>G	c.(1879-1881)CAC>CGC	p.H627R	SEMA6A_uc003krx.3_Missense_Mutation_p.H644R|SEMA6A_uc003krv.3_Missense_Mutation_p.H54R|SEMA6A_uc003krw.3_Intron|SEMA6A_uc010jcj.2_Missense_Mutation_p.H171R	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	627	Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		CTTGTCTTGGTGATTATGGGA	0.532													4	30					0	0	1	0	0	
TCF7	6932	broad.mit.edu	37	5	133477913	133477913	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:133477913C>G	uc003kyt.2	+	6	869	c.673C>G	c.(673-675)CCT>GCT	p.P225A	TCF7_uc003kyu.1_Missense_Mutation_p.P110A|TCF7_uc003kyv.2_Missense_Mutation_p.P110A|TCF7_uc003kyw.2_Missense_Mutation_p.P110A|TCF7_uc003kyx.2_Missense_Mutation_p.P23A|TCF7_uc003kyy.2_Missense_Mutation_p.P110A|TCF7_uc003kyz.2_Missense_Mutation_p.P110A|TCF7_uc003kza.2_Missense_Mutation_p.P110A|TCF7_uc003kzb.2_Missense_Mutation_p.P39A|TCF7_uc010jdu.2_5'Flank	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	225					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTCTGGTGTACCTGGTCACCC	0.567													36	72					0	0	1	0	0	
TRPC7	57113	broad.mit.edu	37	5	135692494	135692494	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:135692494G>A	uc003lbn.1	-	1	582	c.579C>T	c.(577-579)CAC>CAT	p.H193H	TRPC7_uc010jef.1_Silent_p.H185H|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.H185H|TRPC7_uc010jei.1_Silent_p.H185H|TRPC7_uc010jej.1_Translation_Start_Site	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	194	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGAAGTAGTCGTGGGGCCGCT	0.607													19	48					0	0	1	0	0	
KLHL3	26249	broad.mit.edu	37	5	137056165	137056165	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:137056165A>G	uc010jek.2	-	2	567	c.123T>C	c.(121-123)AAT>AAC	p.N41N	MYOT_uc011cye.1_Intron|KLHL3_uc010jem.1_Intron	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	41						cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		TCCGCAGTTCATTCATAACCT	0.488													35	81					0	0	1	0	0	
KIF20A	10112	broad.mit.edu	37	5	137515455	137515455	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:137515455C>T	uc003lcj.2	+	2	582	c.86C>T	c.(85-87)GCA>GTA	p.A29V	BRD8_uc003lcc.1_5'Flank|BRD8_uc003lcf.1_5'Flank|BRD8_uc003lcg.2_5'Flank|BRD8_uc003lci.2_5'Flank|BRD8_uc003lch.2_5'Flank|BRD8_uc011cym.1_5'Flank|BRD8_uc010jer.1_5'Flank|BRD8_uc011cyn.1_5'Flank|BRD8_uc010jes.1_5'Flank|KIF20A_uc011cyo.1_Missense_Mutation_p.A29V	NM_005733	NP_005724	O95235	KI20A_HUMAN	kinesin family member 20A	29					cytokinesis|M phase of mitotic cell cycle|microtubule-based movement|protein transport|vesicle-mediated transport	Golgi apparatus|microtubule|nucleoplasm	ATP binding|microtubule motor activity|protein binding|transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TCCACAGCTGCAGATTTGGGG	0.567													8	88					0	0	1	0	0	
REEP2	51308	broad.mit.edu	37	5	137781024	137781024	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:137781024A>G	uc003lcz.2	+	6	641	c.519A>G	c.(517-519)CGA>CGG	p.R173R	REEP2_uc003lda.2_Silent_p.R175R|REEP2_uc011cyt.1_Silent_p.R134R	NM_016606	NP_057690	Q9BRK0	REEP2_HUMAN	receptor accessory protein 2	173						integral to membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GCCGCCTCCGACCCAGCCCTG	0.672													12	30					0	0	1	0	0	
SLC4A9	83697	broad.mit.edu	37	5	139740369	139740369	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:139740369T>C	uc003lfm.2	+	2	310	c.275T>C	c.(274-276)ATA>ACA	p.I92T	SLC4A9_uc003lfj.2_Intron|SLC4A9_uc011czg.1_Intron|SLC4A9_uc003lfl.2_Intron|SLC4A9_uc003lfk.2_Intron	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	92	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGCCCTCAATAACACTGTCT	0.597													4	15					0	0	1	0	0	
PCDHA2	56146	broad.mit.edu	37	5	140176295	140176295	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140176295G>A	uc003lhd.2	+	1	1852	c.1746G>A	c.(1744-1746)CCG>CCA	p.P582P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.P582P|PCDHA2_uc011czy.1_Silent_p.P582P	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	582	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGGTGCCGTGGTCGGTGG	0.657													32	57					0	0	1	0	0	
PCDHA3	56145	broad.mit.edu	37	5	140182244	140182244	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140182244G>A	uc003lhf.2	+	1	1462	c.1462G>A	c.(1462-1464)GCC>ACC	p.A488T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.A488T	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	488	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGGAGAACGCCCTGGTGTC	0.662													10	147					0	0	1	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140222046	140222046	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140222046T>C	uc003lhs.2	+	1	1140	c.1140T>C	c.(1138-1140)GGT>GGC	p.G380G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.G380G	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	380	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGATTCAGGTGCCAACGGGC	0.542													8	173					0	0	1	0	0	
PCDHA8	56140	broad.mit.edu	37	5	140223200	140223200	+	Missense_Mutation	SNP	C	T	T	rs111750019	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140223200C>T	uc003lhs.2	+	1	2294	c.2294C>T	c.(2293-2295)CCG>CTG	p.P765L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P765L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	765	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGGGCCACCGAAGACGGAC	0.587													11	38					0	0	1	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140248772	140248772	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140248772C>T	uc003lia.2	+	1	942	c.84C>T	c.(82-84)AGC>AGT	p.S28S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.S28S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	28					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGGGGAGCGGCCAGCTCC	0.622													29	53					0	0	1	0	0	
PCDHA13	56136	broad.mit.edu	37	5	140262962	140262962	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140262962C>T	uc003lif.2	+	1	1109	c.1109C>T	c.(1108-1110)GCC>GTC	p.A370V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.A370V|PCDHA13_uc003lid.2_Missense_Mutation_p.A370V	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	370	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCATTATTGCCCTAATCAGT	0.507													11	125					0	0	1	0	0	
PCDHA13	56136	broad.mit.edu	37	5	140263639	140263639	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140263639G>A	uc003lif.2	+	1	1786	c.1786G>A	c.(1786-1788)GCG>ACG	p.A596T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.A596T|PCDHA13_uc003lid.2_Missense_Mutation_p.A596T	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	596	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGGTGCGCGCGGTGGACGC	0.706													12	105					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140515685	140515685	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140515685C>T	uc003liq.2	+	1	886	c.669C>T	c.(667-669)TCC>TCT	p.S223S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	223	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCCCAGGTCCGGGACCACCA	0.567													43	104					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140516972	140516972	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140516972G>A	uc003liq.2	+	1	2173	c.1956G>A	c.(1954-1956)TCG>TCA	p.S652S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	652	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTCCGCGCTCGGCCACCGCCA	0.726													18	57					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140517397	140517397	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140517397T>C	uc003liq.2	+	1	2598	c.2381T>C	c.(2380-2382)TTA>TCA	p.L794S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	794	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCTTTGGATTAAATTAGAGA	0.433													7	73					0	0	1	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140554495	140554495	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140554495C>T	uc003lit.2	+	1	2253	c.2079C>T	c.(2077-2079)GCC>GCT	p.A693A	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	693	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCGTTGGCCTCGGTGTCTT	0.706													11	404					0	0	1	0	0	
PCDHB8	56128	broad.mit.edu	37	5	140559119	140559119	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140559119G>A	uc011dai.1	+	1	1690	c.1504G>A	c.(1504-1506)GCC>ACC	p.A502T	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	502	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGCCCCTCGCCTCCCTGGT	0.672													46	494					0	0	1	0	0	
PCDHB16	57717	broad.mit.edu	37	5	140562190	140562190	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140562190T>C	uc003liv.2	+	1	1211	c.56T>C	c.(55-57)GTT>GCT	p.V19A	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	19					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTTTTCTTTGTTTTGCTGAGC	0.478													7	97					0	0	1	0	0	
PCDHB10	56126	broad.mit.edu	37	5	140574321	140574321	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140574321T>C	uc003lix.2	+	1	2370	c.2196T>C	c.(2194-2196)GGT>GGC	p.G732G		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	732	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCCCGAGGGTCCTTTTCCAG	0.662													11	114					0	0	1	0	0	
PCDHB12	56124	broad.mit.edu	37	5	140590121	140590121	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140590121C>T	uc003liz.2	+	1	1831	c.1642C>T	c.(1642-1644)CGC>TGC	p.R548C	PCDHB12_uc011dak.1_Missense_Mutation_p.R211C	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	548	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCGCTGGTGCGCGTGCTGGT	0.706													7	63					0	0	1	0	0	
PCDHB14	56122	broad.mit.edu	37	5	140603564	140603564	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140603564G>A	uc003ljb.2	+	1	487	c.487G>A	c.(487-489)GGA>AGA	p.G163R	PCDHB14_uc011dal.1_Missense_Mutation_p.G10R	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	163	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTGGATGTCGGAAGCAACAG	0.408													8	82					0	0	1	0	0	
PCDHGA4	56111	broad.mit.edu	37	5	140737100	140737100	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140737100C>T	uc003ljq.1	+	1	2333	c.2333C>T	c.(2332-2334)ACG>ATG	p.T778M	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Missense_Mutation_p.T778M|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	778	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATGCAGACACGCTCATCAGC	0.527													31	99					0	0	1	0	0	
PCDHGB4	8641	broad.mit.edu	37	5	140769364	140769364	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140769364A>C	uc003lkc.1	+	1	1913	c.1913A>C	c.(1912-1914)CAG>CCG	p.Q638P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.Q638P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	638	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGTCCGCCAGCGCCTTCTG	0.701													4	25					0	0	1	0	0	
PCDHGB5	56101	broad.mit.edu	37	5	140778761	140778761	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140778761C>T	uc003lkf.1	+	1	1067	c.1067C>T	c.(1066-1068)GCG>GTG	p.A356V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.A356V	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	356	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGAAAACGCGGTGCCTGGA	0.378													11	44					0	0	1	0	0	
PCDHGC4	56098	broad.mit.edu	37	5	140864818	140864818	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:140864818C>T	uc003lky.1	+	1	78	c.78C>T	c.(76-78)TAC>TAT	p.Y26Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.Y26Y	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	26					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTGGGTTACGTTTGTGGGC	0.537													11	61					0	0	1	0	0	
RBM27	54439	broad.mit.edu	37	5	145609441	145609441	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:145609441G>A	uc003lnz.3	+	5	723	c.557G>A	c.(556-558)CGC>CAC	p.R186H	RBM27_uc003lny.2_Missense_Mutation_p.R186H	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	186	Arg-rich.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGTAGGGGGCGCAGCAAAGAC	0.418													24	71					0	0	1	0	0	
PPP2R2B	5521	broad.mit.edu	37	5	146077585	146077585	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:146077585C>T	uc003loe.2	-	3	816	c.291G>A	c.(289-291)TGG>TGA	p.W97*	PPP2R2B_uc010jgm.2_Nonsense_Mutation_p.W86*|PPP2R2B_uc003log.3_Nonsense_Mutation_p.W97*|PPP2R2B_uc003lof.3_Nonsense_Mutation_p.W97*|PPP2R2B_uc003loi.3_Nonsense_Mutation_p.W100*|PPP2R2B_uc003loh.3_Nonsense_Mutation_p.W97*|PPP2R2B_uc003loj.3_Nonsense_Mutation_p.W77*|PPP2R2B_uc003lok.3_Nonsense_Mutation_p.W86*|PPP2R2B_uc011dbu.1_Nonsense_Mutation_p.W103*|PPP2R2B_uc011dbv.1_Nonsense_Mutation_p.W155*	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	97	WD 2.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCTGGGGGAGCCATCTTATTT	0.388													6	81					0	0	1	0	0	
DPYSL3	1809	broad.mit.edu	37	5	146788353	146788353	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:146788353T>C	uc003lon.1	-	7	738	c.628A>G	c.(628-630)ACC>GCC	p.T210A	DPYSL3_uc003loo.2_Missense_Mutation_p.T324A	NM_001387	NP_001378	Q14195	DPYL3_HUMAN	dihydropyrimidinase-like 3	210					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol|growth cone	dihydropyrimidinase activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACATGCGGGTTTGCTCCTGA	0.418													8	45					0	0	1	0	0	
CSNK1A1	1452	broad.mit.edu	37	5	148886637	148886637	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:148886637T>G	uc003lqx.1	-	8	1290	c.810A>C	c.(808-810)GAA>GAC	p.E270D	CSNK1A1_uc011dcb.1_Missense_Mutation_p.E179D|CSNK1A1_uc011dcc.1_Missense_Mutation_p.E209D|CSNK1A1_uc003lqv.1_Missense_Mutation_p.E181D|CSNK1A1_uc003lqw.1_Missense_Mutation_p.E298D|CSNK1A1_uc003lqy.1_Missense_Mutation_p.E270D|CSNK1A1_uc010jha.1_Missense_Mutation_p.E270D	NM_001892	NP_001883	P48729	KC1A_HUMAN	casein kinase 1, alpha 1 isoform 2	270	Protein kinase.				cell division|mitosis|Wnt receptor signaling pathway	centrosome|condensed chromosome kinetochore|cytosol|nuclear speck	ATP binding|protein binding|protein binding|protein serine/threonine kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		AATCTGGGGCTTCCTCAAAGC	0.373													3	33					0	0	1	0	0	
TIGD6	81789	broad.mit.edu	37	5	149375905	149375905	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:149375905T>C	uc003lri.2	-	2	769	c.7A>G	c.(7-9)AAC>GAC	p.N3D	TIGD6_uc003lrj.2_Missense_Mutation_p.N3D	NM_030953	NP_112215	Q17RP2	TIGD6_HUMAN	hypothetical protein LOC81789	3	HTH psq-type.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TTCCCCTTGTTTGCCATTTCC	0.512													35	83					0	0	1	0	0	
CSF1R	1436	broad.mit.edu	37	5	149460351	149460351	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:149460351C>T	uc003lrl.2	-	2	481	c.286G>A	c.(286-288)GCC>ACC	p.A96T	CSF1R_uc011dcd.1_5'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.A96T|CSF1R_uc011dce.1_Missense_Mutation_p.A96T|CSF1R_uc011dcf.1_Missense_Mutation_p.A96T	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	96	Ig-like C2-type 1.|Extracellular (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	AGGTGGATGGCGGCGCTGCCT	0.582													8	21					0	0	1	0	0	
TCOF1	6949	broad.mit.edu	37	5	149751643	149751643	+	Silent	SNP	G	A	A	rs147186583	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:149751643G>A	uc003lry.2	+	7	822	c.714G>A	c.(712-714)GCG>GCA	p.A238A	TCOF1_uc003lrw.2_Silent_p.A238A|TCOF1_uc011dch.1_Silent_p.A238A|TCOF1_uc003lrz.2_Silent_p.A238A|TCOF1_uc003lrx.2_Intron|TCOF1_uc003lsa.2_Intron	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	238					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAAGAAAGGCGGCCCCAGCCC	0.567													4	30					0	0	1	0	0	
FAT2	2196	broad.mit.edu	37	5	150887067	150887067	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:150887067G>A	uc003lue.3	-	22	12178	c.12165C>T	c.(12163-12165)GCC>GCT	p.A4055A	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Silent_p.A662A	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4055	Helical; (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGAACGCCACGGCCACTGTGA	0.572													7	63					0	0	1	0	0	
SPARC	6678	broad.mit.edu	37	5	151043781	151043781	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:151043781G>A	uc003luh.2	-	8	774	c.750C>T	c.(748-750)ACC>ACT	p.T250T	GM2A_uc011dcs.1_Intron|SPARC_uc003lug.2_Silent_p.T84T|SPARC_uc003lui.2_Silent_p.T250T	NM_003118	NP_003109	P09486	SPRC_HUMAN	secreted protein, acidic, cysteine-rich	250					ossification|platelet activation|platelet degranulation|signal transduction	basement membrane|extracellular space|platelet alpha granule lumen	calcium ion binding|collagen binding			central_nervous_system(1)	1		Medulloblastoma(196;0.109)|all_hematologic(541;0.122)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;0.00118)	Becaplermin(DB00102)	GAGCCAGCTCGGTGTGGGAGA	0.622													3	27					0	0	1	0	0	
LARP1	23367	broad.mit.edu	37	5	154181920	154181920	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:154181920G>A	uc003lvp.2	+	11	2499	c.2070G>A	c.(2068-2070)CTG>CTA	p.L690L	LARP1_uc003lvo.2_Silent_p.L613L|LARP1_uc010jie.1_Silent_p.L485L	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	690							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			AGCAGGACCTGTGGGCTGAAA	0.547													7	48					0	0	1	0	0	
ADAM19	8728	broad.mit.edu	37	5	156915296	156915296	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:156915296C>T	uc003lwz.2	-	21	2591	c.2527G>A	c.(2527-2529)GCA>ACA	p.A843T	ADAM19_uc003lww.1_Missense_Mutation_p.A576T|ADAM19_uc003lwy.2_Missense_Mutation_p.A442T|ADAM19_uc011ddr.1_Missense_Mutation_p.A774T	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	843	Cytoplasmic (Potential).|SH3-binding (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CAATTTGGTGCGGGGGGAATT	0.562													40	152					0	0	1	0	0	
DOCK2	1794	broad.mit.edu	37	5	169506070	169506070	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:169506070C>T	uc003maf.2	+	49	5166	c.5086C>T	c.(5086-5088)CGG>TGG	p.R1696W	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.R1188W|DOCK2_uc003mah.2_Missense_Mutation_p.R252W	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1696					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTCAAGCTGCGGAGGTCCAA	0.572													25	53					0	0	1	0	0	
STK10	6793	broad.mit.edu	37	5	171520517	171520517	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:171520517A>G	uc003mbo.1	-	9	1753	c.1453T>C	c.(1453-1455)TCG>CCG	p.S485P		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	485							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTGCAGTCCGAGTCCCTCTTG	0.607													7	137					0	0	1	0	0	
TSPAN17	26262	broad.mit.edu	37	5	176079825	176079825	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:176079825G>A	uc003met.2	+	4	596	c.367G>A	c.(367-369)GAC>AAC	p.D123N	TSPAN17_uc003mes.3_Missense_Mutation_p.D57N|TSPAN17_uc003meu.2_Missense_Mutation_p.D123N|TSPAN17_uc003mev.2_Missense_Mutation_p.D123N|TSPAN17_uc003mew.2_Missense_Mutation_p.D123N	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	123	Extracellular (Potential).					integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGGATTCGAGACCAGCTCAA	0.522													19	168					0	0	1	0	0	
NSD1	64324	broad.mit.edu	37	5	176719126	176719126	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:176719126G>A	uc003mfr.3	+	22	6568	c.6430G>A	c.(6430-6432)GCA>ACA	p.A2144T	NSD1_uc003mft.3_Missense_Mutation_p.A1875T|NSD1_uc011dfx.1_Missense_Mutation_p.A1792T	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2144	PHD-type 4; atypical.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		AGTTTACCACGCAGACTGTCT	0.502			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			6	49					0	0	1	0	0	
FAM193B	54540	broad.mit.edu	37	5	176966091	176966091	+	Translation_Start_Site	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:176966091G>A	uc003mhs.3	-	3	1518	c.-71C>T	c.(-73--69)AACGC>AATGC		FAM193B_uc003mht.2_5'Flank|FAM193B_uc003mhu.2_5'Flank|FAM193B_uc003mhv.2_Translation_Start_Site|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540												0						CAGCCTTTGCGTTCCCGGTGA	0.587													3	9					0	0	1	0	0	
HNRNPAB	3182	broad.mit.edu	37	5	177633848	177633848	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:177633848C>A	uc003miu.2	+	4	751	c.494C>A	c.(493-495)GCC>GAC	p.A165D	HNRNPAB_uc003miv.2_Missense_Mutation_p.A165D|HNRNPAB_uc010jks.2_Missense_Mutation_p.A165D|HNRNPAB_uc003miw.2_Missense_Mutation_p.A165D|HNRNPAB_uc003mix.2_Missense_Mutation_p.A165D	NM_031266	NP_112556	Q99729	ROAA_HUMAN	heterogeneous nuclear ribonucleoprotein A/B	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0						AATCCTGAAGCCACTGAGGAA	0.537													20	57					7.92952e-12	8.58113e-12	1	1	0	
AGXT2L2	85007	broad.mit.edu	37	5	177642329	177642329	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:177642329T>C	uc003miz.2	-	9	1282	c.1030A>G	c.(1030-1032)ATG>GTG	p.M344V	AGXT2L2_uc003miy.2_Missense_Mutation_p.M69V|AGXT2L2_uc003mjc.2_Missense_Mutation_p.M303V|AGXT2L2_uc003mja.2_RNA|AGXT2L2_uc003mjb.2_Missense_Mutation_p.M69V|AGXT2L2_uc003mjd.1_Missense_Mutation_p.M202V	NM_153373	NP_699204	Q8IUZ5	AT2L2_HUMAN	alanine-glyoxylate aminotransferase 2-like 2	344						mitochondrion	pyridoxal phosphate binding|transaminase activity			pancreas(1)	1	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.181)|all cancers(165;0.235)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	AGGAGCTGCATCAGGAAGCTG	0.617													6	24					0	0	1	0	0	
GRM6	2916	broad.mit.edu	37	5	178413950	178413950	+	Silent	SNP	G	A	A	rs139745015		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:178413950G>A	uc003mjr.2	-	7	1568	c.1389C>T	c.(1387-1389)AAC>AAT	p.N463N	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Silent_p.N46N|GRM6_uc003mjs.1_Silent_p.N83N	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	463	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCGCATCTCCGTTCTCGTTGA	0.657													5	21					0	0	1	0	0	
RUFY1	80230	broad.mit.edu	37	5	178996343	178996343	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:178996343G>T	uc003mka.1	+	5	745	c.745G>T	c.(745-747)GGG>TGG	p.G249W	RUFY1_uc003mkb.1_Missense_Mutation_p.G141W|RUFY1_uc003mkc.1_Missense_Mutation_p.G141W	NM_025158	NP_079434	Q96T51	RUFY1_HUMAN	RUN and FYVE domain-containing 1 isoform a	249	RUN.				endocytosis|protein transport	early endosome membrane	lipid binding|zinc ion binding			ovary(4)|breast(1)	5	all_cancers(89;0.00018)|all_epithelial(37;8.37e-05)|Renal(175;0.000159)|Lung NSC(126;0.00108)|all_lung(126;0.00195)	all_cancers(40;0.0322)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGAGGAAGAAGGGATGGTGAT	0.473										HNSCC(44;0.11)			20	119					4.26978e-12	4.63236e-12	1	1	0	
BTNL9	153579	broad.mit.edu	37	5	180486592	180486592	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:180486592G>A	uc003mmt.2	+	11	1569	c.1338G>A	c.(1336-1338)CCG>CCA	p.P446P		NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	446	Cytoplasmic (Potential).|B30.2/SPRY.					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCGTGCCCCCGCGGCGCCTGG	0.687													14	37					0	0	1	0	0	
C6orf145	221749	broad.mit.edu	37	6	3751713	3751713	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:3751713C>T	uc003mvt.2	-	1	534	c.53G>A	c.(52-54)GGC>GAC	p.G18D		NM_183373	NP_899229	Q5TGL8	CF145_HUMAN	hypothetical protein LOC221749	18	PX.				cell communication		phosphatidylinositol binding			breast(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				CACCCAGCAGCCGCGCACGAA	0.622													4	15					0	0	1	0	0	
GCNT2	2651	broad.mit.edu	37	6	10529926	10529926	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:10529926A>G	uc010joo.2	+	3	1333	c.782A>G	c.(781-783)TAC>TGC	p.Y261C	GCNT2_uc010jol.2_Intron|GCNT2_uc010jom.2_Intron|GCNT2_uc010jop.2_Intron|GCNT2_uc003mza.2_Intron|GCNT2_uc003mzc.3_Missense_Mutation_p.Y260C|GCNT2_uc010jon.2_Missense_Mutation_p.Y260C	NM_145649	NP_663624	Q8N0V5	GNT2A_HUMAN	glucosaminyl (N-acetyl) transferase 2,	261	Lumenal (Potential).					Golgi membrane|integral to membrane	N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(2)	2	Ovarian(93;0.107)|Breast(50;0.148)	all_hematologic(90;0.107)		KIRC - Kidney renal clear cell carcinoma(1;0.099)|Kidney(1;0.119)		ATGGTGATTTACTTTGGCACG	0.453													5	134					0	0	1	0	0	
CAP2	10486	broad.mit.edu	37	6	17551823	17551823	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:17551823G>T	uc003ncb.2	+	12	1581	c.1338G>T	c.(1336-1338)CAG>CAT	p.Q446H	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.Q420H|CAP2_uc011djb.1_Missense_Mutation_p.Q382H|CAP2_uc011djc.1_Missense_Mutation_p.Q334H|CAP2_uc011djd.1_Missense_Mutation_p.Q186H	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	446	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TTATCCCTCAGGATGGTGATT	0.383													38	85					5.48756e-27	6.05719e-27	1	1	0	
NRSN1	140767	broad.mit.edu	37	6	24145884	24145884	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:24145884G>A	uc010jpq.1	+	4	535	c.298G>A	c.(298-300)GTG>ATG	p.V100M		NM_080723	NP_542454	Q8IZ57	NRSN1_HUMAN	neurensin 1	100					nervous system development	growth cone|integral to membrane|neuronal cell body|transport vesicle					0						CGATTTTGTGGTGGTCGACAC	0.517													8	65					0	0	1	0	0	
ZNF192	7745	broad.mit.edu	37	6	28121148	28121148	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:28121148G>A	uc003nkn.1	+	6	1274	c.1090G>A	c.(1090-1092)GCC>ACC	p.A364T	ZNF192_uc010jqx.1_Missense_Mutation_p.A364T|ZNF192_uc010jqy.1_Missense_Mutation_p.A177T|ZNF192_uc011dkz.1_Missense_Mutation_p.A177T	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	364	C2H2-type 2.				viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TTACAGGTCAGCCCTTCTTTC	0.483													98	290					0	0	1	0	0	
GPX6	257202	broad.mit.edu	37	6	28472268	28472268	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:28472268C>T	uc011dlj.1	-	6	517	c.467G>A	c.(466-468)TGC>TAC	p.C156Y	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	156					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GGTCGGAGGGCAGGAGTTCTG	0.438													8	31					0	0	1	0	0	
SCAND3	114821	broad.mit.edu	37	6	28543694	28543694	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:28543694G>A	uc003nlo.2	-	3	1406	c.788C>T	c.(787-789)GCG>GTG	p.A263V		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	263	Potential.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTCCTTTTTCGCCTTAGCTTT	0.358													31	80					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	6	28829611	28829611	+	RNA	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:28829611A>G	uc003nlq.2	-	2		c.576T>C								Homo sapiens cDNA FLJ30941 fis, clone FEBRA2007458.																		CTGCTGAAGAACAGAAATTGG	0.512													3	16					0	0	1	0	0	
HLA-J	3137	broad.mit.edu	37	6	29976188	29976188	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:29976188A>G	uc003rtl.3	+	2	453	c.91A>G	c.(91-93)ACA>GCA	p.T31A	HLA-G_uc011dmb.1_Intron|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						ACAGAGATACACATGCCATGT	0.597													5	28					0	0	1	0	0	
BAT3	7917	broad.mit.edu	37	6	31609931	31609931	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:31609931C>T	uc003nvg.3	-	15	2517	c.2203G>A	c.(2203-2205)GGA>AGA	p.G735R	BAT3_uc003nvf.3_Missense_Mutation_p.G729R|BAT3_uc003nvh.3_Missense_Mutation_p.G729R|BAT3_uc003nvi.3_Missense_Mutation_p.G729R|BAT3_uc011dnw.1_Missense_Mutation_p.G729R|BAT3_uc011dnx.1_Missense_Mutation_p.G603R	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	735					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						TTGCTGGATCCACTGAGGCGT	0.577													7	105					0	0	1	0	0	
C6orf47	57827	broad.mit.edu	37	6	31626870	31626870	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:31626870C>T	uc003nvm.1	-	1	1680	c.855G>A	c.(853-855)GAG>GAA	p.E285E		NM_021184	NP_067007	O95873	CF047_HUMAN	G4 protein	285										ovary(1)	1						CTCCCCTCTGCTCCTCACCTT	0.617													7	148					0	0	1	0	0	
SKIV2L	6499	broad.mit.edu	37	6	31936512	31936512	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:31936512T>C	uc003nyn.1	+	25	3508	c.3119T>C	c.(3118-3120)CTG>CCG	p.L1040P	SKIV2L_uc011dou.1_Missense_Mutation_p.L882P|SKIV2L_uc011dov.1_Missense_Mutation_p.L847P|STK19_uc003nyt.2_5'Flank	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	1040						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						ATGGAGCGGCTGCGCTTCCTA	0.612													14	119					0	0	1	0	0	
NOTCH4	4855	broad.mit.edu	37	6	32166763	32166763	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:32166763C>T	uc003obb.2	-	24	4614	c.4475G>A	c.(4474-4476)CGG>CAG	p.R1492Q	NOTCH4_uc011dpt.1_5'Flank|NOTCH4_uc003oba.2_Missense_Mutation_p.R155Q|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_5'Flank	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1492	Cytoplasmic (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TGACTGAGTCCGAGGCCGTCG	0.642													42	92					0	0	1	0	0	
BRD2	6046	broad.mit.edu	37	6	32942267	32942267	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:32942267C>T	uc003ocn.3	+	3	1759	c.58C>T	c.(58-60)CTG>TTG	p.L20L	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Silent_p.L20L|BRD2_uc003ocp.3_5'UTR|BRD2_uc010juh.2_Silent_p.L20L	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	20					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						TGCAGGGTTGCTGGGGCTGGG	0.527													12	108					0	0	1	0	0	
TAPBP	6892	broad.mit.edu	37	6	33272822	33272822	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:33272822G>A	uc003odx.1	-	4	983	c.812C>T	c.(811-813)GCC>GTC	p.A271V	TAPBP_uc010jus.1_Missense_Mutation_p.A289V|TAPBP_uc003ody.2_Missense_Mutation_p.A271V|TAPBP_uc003odz.2_Missense_Mutation_p.A271V|TAPBP_uc010jut.1_Missense_Mutation_p.A184V|TAPBP_uc011drc.1_Missense_Mutation_p.A271V	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	271	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						GTGTATGGTGGCCAGATAGGT	0.577													53	77					0	0	1	0	0	
ITPR3	3710	broad.mit.edu	37	6	33648141	33648141	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:33648141C>T	uc011drk.1	+	32	4479	c.4260C>T	c.(4258-4260)TGC>TGT	p.C1420C		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1420	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						TGAACCACTGCTACGTGGACA	0.602													6	39					0	0	1	0	0	
ITPR3	3710	broad.mit.edu	37	6	33650343	33650343	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:33650343C>T	uc011drk.1	+	34	4738	c.4519C>T	c.(4519-4521)CGC>TGC	p.R1507C		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1507	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GTCTACCACACGCCTCCTCGA	0.662													20	62					0	0	1	0	0	
C6orf1	221491	broad.mit.edu	37	6	34214513	34214513	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:34214513A>G	uc003ojf.2	-	5	850	c.258T>C	c.(256-258)CTT>CTC	p.L86L	uc003oje.1_5'Flank|C6orf1_uc003ojg.2_Silent_p.L86L|C6orf1_uc003ojh.2_Silent_p.L86L|C6orf1_uc003oji.2_RNA	NM_178508	NP_848603	Q86T20	CF001_HUMAN	hypothetical protein LOC221491 precursor	86						extracellular region					0		Ovarian(999;0.0228)		BRCA - Breast invasive adenocarcinoma(397;1.11e-10)		ACAGCAGGGGAAGCAGATGGC	0.642											OREG0017364	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	53					0	0	1	0	0	
DNAH8	1769	broad.mit.edu	37	6	38994432	38994432	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:38994432T>C	uc003ooe.1	+	90	13774	c.13174T>C	c.(13174-13176)TCA>CCA	p.S4392P		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGAGATCACGTCACCCCCTGG	0.532													3	79					0	0	1	0	0	
KCNK16	83795	broad.mit.edu	37	6	39284590	39284590	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:39284590A>T	uc003ooq.2	-	4	643	c.629T>A	c.(628-630)CTC>CAC	p.L210H	KCNK17_uc003ooo.2_5'Flank|KCNK17_uc003oop.2_5'Flank|KCNK16_uc003oor.3_Missense_Mutation_p.L210H|KCNK16_uc010jwy.2_Missense_Mutation_p.L210H|KCNK16_uc011dtz.1_Missense_Mutation_p.L210H	NM_032115	NP_115491	Q96T55	KCNKG_HUMAN	potassium channel, subfamily K, member 16	210						integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(1)	3						AATGGTGCTGAGAGTGATGAA	0.537													16	233					0	0	1	0	0	
KLHDC3	116138	broad.mit.edu	37	6	42985279	42985279	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:42985279G>A	uc003otl.2	+	3	346	c.177G>A	c.(175-177)CTG>CTA	p.L59L	KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Silent_p.L59L|KLHDC3_uc003otn.2_5'UTR|KLHDC3_uc003oto.2_Intron	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	59	Kelch 1.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GGACAAAGCTGCCCCCGGTGA	0.587													12	65					0	0	1	0	0	
TDRD6	221400	broad.mit.edu	37	6	46658738	46658738	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:46658738G>T	uc003oyj.2	+	1	2873	c.2873G>T	c.(2872-2874)AGA>ATA	p.R958I	TDRD6_uc010jze.2_Missense_Mutation_p.R952I	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	958					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			AGACTTGCAAGACCAGTAAAA	0.373													7	72					8.12818e-05	8.43872e-05	1	1	0	
PKHD1	5314	broad.mit.edu	37	6	51777171	51777171	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:51777171G>T	uc003pah.1	-	38	6601	c.6325C>A	c.(6325-6327)CCT>ACT	p.P2109T	PKHD1_uc010jzn.1_Missense_Mutation_p.P134T|PKHD1_uc003pai.2_Missense_Mutation_p.P2109T	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	2109	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TACCTCAAAGGTGACTTAAGA	0.433													5	99					0.000602214	0.000618842	1	1	0	
BAI3	577	broad.mit.edu	37	6	69653793	69653793	+	Silent	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:69653793A>C	uc003pev.3	+	6	1550	c.1102A>C	c.(1102-1104)AGA>CGA	p.R368R	BAI3_uc010kak.2_Silent_p.R368R	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	368	Extracellular (Potential).|TSP type-1 2.				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CCAAAGAACAAGAACAAGGTC	0.458													12	104					0	0	1	0	0	
HTR1B	3351	broad.mit.edu	37	6	78172393	78172393	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:78172393G>A	uc003pil.1	-	1	728	c.728C>T	c.(727-729)ACG>ATG	p.T243M		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	243	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	CCTGTTGGGCGTCTGTTTCAA	0.612													18	45					0	0	1	0	0	
KIAA1009	22832	broad.mit.edu	37	6	84913717	84913717	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:84913717T>C	uc010kbp.2	-	7	766	c.669A>G	c.(667-669)AAA>AAG	p.K223K	KIAA1009_uc003pkj.3_Silent_p.K147K|KIAA1009_uc003pkk.2_Silent_p.K223K	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	223					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		GCACACTTATTTTTTCTGATT	0.343													7	50					0	0	1	0	0	
TBX18	9096	broad.mit.edu	37	6	85453993	85453993	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:85453993G>C	uc003pkl.1	-	6	990	c.990C>G	c.(988-990)GAC>GAG	p.D330E	TBX18_uc010kbq.1_Missense_Mutation_p.D172E	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	330	T-box.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		TGCGCCCGGAGTCTCGGAAGC	0.348													7	48					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90360519	90360519	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:90360519C>T	uc003pnn.1	-	96	16079	c.15963G>A	c.(15961-15963)GCG>GCA	p.A5321A		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	5321					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GTGAAAGAGGCGCTGTTAAGA	0.483													18	55					0	0	1	0	0	
MDN1	23195	broad.mit.edu	37	6	90402711	90402711	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:90402711C>T	uc003pnn.1	-	63	10154	c.10038G>A	c.(10036-10038)CTG>CTA	p.L3346L		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3346					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		GCCGTGTGAGCAGATCCTGAA	0.602													7	27					0	0	1	0	0	
C6orf167	253714	broad.mit.edu	37	6	97720928	97720928	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:97720928T>C	uc003ppb.2	-	5	617	c.351A>G	c.(349-351)TCA>TCG	p.S117S	C6orf167_uc011eaf.1_Silent_p.S117S|C6orf167_uc010kcn.1_5'UTR|C6orf167_uc010kco.1_5'UTR|C6orf167_uc003ppc.2_Silent_p.S117S	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	117					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		AGTGTAGAGTTGATACCTTCC	0.284													9	160					0	0	1	0	0	
SIM1	6492	broad.mit.edu	37	6	100897247	100897247	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:100897247C>T	uc003pqj.3	-	5	742	c.535G>A	c.(535-537)GGC>AGC	p.G179S	SIM1_uc010kcu.2_Missense_Mutation_p.G179S	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	179					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		ACCTTGTAGCCGCCACAGGTG	0.617													9	27					0	0	1	0	0	
OSTM1	28962	broad.mit.edu	37	6	108366005	108366005	+	Missense_Mutation	SNP	T	C	C	rs142270062		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:108366005T>C	uc003psd.2	-	6	1075	c.989A>G	c.(988-990)CAG>CGG	p.Q330R	OSTM1_uc003pse.1_5'Flank	NM_014028	NP_054747	Q86WC4	OSTM1_HUMAN	osteopetrosis associated transmembrane protein 1	330	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(87;3.82e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000195)|Colorectal(196;0.0293)|all_lung(197;0.0938)		BRCA - Breast invasive adenocarcinoma(108;0.0131)|Epithelial(106;0.0438)|OV - Ovarian serous cystadenocarcinoma(136;0.0571)|all cancers(137;0.0581)		TGAATTTTCCTGAATATTTGC	0.299													7	51					0	0	1	0	0	
CDC40	51362	broad.mit.edu	37	6	110501676	110501676	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:110501676C>T	uc003pua.2	+	1	53	c.29C>T	c.(28-30)GCT>GTT	p.A10V	WASF1_uc003ptv.1_5'Flank|WASF1_uc003ptw.1_5'Flank|WASF1_uc003ptx.1_5'Flank|WASF1_uc003pty.1_5'Flank|WASF1_uc003ptz.1_5'Flank	NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	10					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		GCTCTGGCCGCTTCCTATGGT	0.597													7	55					0	0	1	0	0	
HS3ST5	222537	broad.mit.edu	37	6	114379310	114379310	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:114379310C>T	uc003pwg.3	-	2	184	c.152G>A	c.(151-153)CGC>CAC	p.R51H	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.R51H	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	51	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		AGCCTGAGTGCGGGCTCCACC	0.537													6	32					0	0	1	0	0	
GPRC6A	222545	broad.mit.edu	37	6	117113344	117113344	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:117113344T>C	uc003pxj.1	-	6	2764	c.2742A>G	c.(2740-2742)GTA>GTG	p.V914V	GPRC6A_uc003pxk.1_Silent_p.V739V|GPRC6A_uc003pxl.1_Silent_p.V843V	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	914	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AAGTTTTAGATACACTTGTGG	0.418													23	170					0	0	1	0	0	
C6orf174	387104	broad.mit.edu	37	6	127796642	127796642	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:127796642C>T	uc003qbd.2	-	6	3394	c.2529G>A	c.(2527-2529)GCG>GCA	p.A843A	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	843						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CGTAGATGCGCGCCTCGGTGA	0.657													37	93					0	0	1	0	0	
C6orf58	352999	broad.mit.edu	37	6	127899903	127899903	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:127899903A>G	uc003qbh.2	+	2	386	c.374A>G	c.(373-375)GAC>GGC	p.D125G		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	125						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		ATCTCTGTGGACAGTTGGTGG	0.438													10	214					0	0	1	0	0	
ENPP3	5169	broad.mit.edu	37	6	132014640	132014640	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:132014640C>T	uc003qcu.3	+	16	1635	c.1288C>T	c.(1288-1290)CGA>TGA	p.R430*	ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Nonsense_Mutation_p.R430*	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	430	Extracellular (Potential).|Phosphodiesterase.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		TTTTCAGTGCCGAAAACCTGA	0.338													7	82					0	0	1	0	0	
SLC2A12	154091	broad.mit.edu	37	6	134350539	134350539	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:134350539C>T	uc003qem.1	-	2	595	c.424G>A	c.(424-426)GTC>ATC	p.V142I		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	142	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		GAGATGGAGACCCCTATGGCA	0.478													8	78					0	0	1	0	0	
MYB	4602	broad.mit.edu	37	6	135515019	135515019	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:135515019T>C	uc003qfc.2	+	7	1005	c.806T>C	c.(805-807)ATA>ACA	p.I269T	MYB_uc003qfh.2_Missense_Mutation_p.I269T|MYB_uc003qfi.2_Missense_Mutation_p.I269T|MYB_uc010kgi.2_Missense_Mutation_p.I269T|MYB_uc003qfq.2_Missense_Mutation_p.I269T|MYB_uc010kgj.2_Missense_Mutation_p.I269T|MYB_uc003qfo.2_Missense_Mutation_p.I269T|MYB_uc003qfu.2_Missense_Mutation_p.I269T|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_5'UTR|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Missense_Mutation_p.I81T|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.I269T|MYB_uc003qgd.1_Missense_Mutation_p.I81T|MYB_uc003qge.1_5'Flank	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	269					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		CATGTAAATATAGTCAATGTC	0.428			T	NFIB	adenoid cystic carcinoma								30	88					0	0	1	0	0	
MAP3K5	4217	broad.mit.edu	37	6	136901470	136901470	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:136901470C>T	uc003qhc.2	-	25	3847	c.3486G>A	c.(3484-3486)GCG>GCA	p.A1162A	MAP3K5_uc011edj.1_Silent_p.A409A|MAP3K5_uc011edk.1_Silent_p.A1008A	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	1162					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		CTGTCTGTACCGCCTTCCGAA	0.403													5	83					0	0	1	0	0	
IL20RA	53832	broad.mit.edu	37	6	137325789	137325789	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:137325789T>C	uc003qhj.2	-	6	1266	c.833A>G	c.(832-834)CAC>CGC	p.H278R	IL20RA_uc011edl.1_Missense_Mutation_p.H229R|IL20RA_uc003qhk.2_Missense_Mutation_p.H167R|IL20RA_uc003qhi.2_Missense_Mutation_p.H10R	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	278	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		TTTGCCAACGTGGATATATCG	0.423													4	126					0	0	1	0	0	
NMBR	4829	broad.mit.edu	37	6	142409703	142409703	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:142409703C>T	uc003qiu.2	-	1	234	c.93G>A	c.(91-93)CCG>CCA	p.P31P		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	31	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		CGTCCGAGGCCGGCAGGAAAT	0.607													13	25					0	0	1	0	0	
GPR126	57211	broad.mit.edu	37	6	142688974	142688974	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:142688974G>A	uc010khc.2	+	3	783	c.372G>A	c.(370-372)GCG>GCA	p.A124A	GPR126_uc010khd.2_Silent_p.A124A|GPR126_uc010khe.2_Silent_p.A124A|GPR126_uc010khf.2_Silent_p.A124A|GPR126_uc003qix.2_Silent_p.A124A	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	124	CUB.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		ACTCAAGTGCGAATGAGATGC	0.423													4	59					0	0	1	0	0	
HIVEP2	3097	broad.mit.edu	37	6	143091478	143091478	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:143091478G>A	uc003qjd.2	-	5	5141	c.4398C>T	c.(4396-4398)TAC>TAT	p.Y1466Y		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1466					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		CAATCTGTCCGTACATCTTTT	0.522													28	50					0	0	1	0	0	
ADAT2	134637	broad.mit.edu	37	6	143755071	143755071	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:143755071C>G	uc003qjj.2	-	3	295	c.249G>C	c.(247-249)TGG>TGC	p.W83C	ADAT2_uc003qjk.1_RNA	NM_182503	NP_872309	Q7Z6V5	ADAT2_HUMAN	deaminase domain containing 1	83					tRNA processing		hydrolase activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(155;5.61e-06)|GBM - Glioblastoma multiforme(68;0.0115)		TTTGACGACACCAATCGAGGA	0.493													9	138					0	0	1	0	0	
SHPRH	257218	broad.mit.edu	37	6	146262928	146262928	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:146262928A>G	uc003qlf.2	-	10	2720	c.2321T>C	c.(2320-2322)GTA>GCA	p.V774A	SHPRH_uc003qld.2_Missense_Mutation_p.V774A|SHPRH_uc003qle.2_Missense_Mutation_p.V774A|SHPRH_uc003qlg.1_Missense_Mutation_p.V330A|SHPRH_uc003qlj.1_Missense_Mutation_p.V663A	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	774	Helicase ATP-binding; second part.				DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		TGAACGCAGTACATCATAGGT	0.413													5	70					0	0	1	0	0	
GRM1	2911	broad.mit.edu	37	6	146755562	146755562	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:146755562C>T	uc010khw.1	+	9	3685	c.3215C>T	c.(3214-3216)CCG>CTG	p.P1072L	GRM1_uc010khv.1_3'UTR|GRM1_uc003qll.2_3'UTR|GRM1_uc011edz.1_3'UTR|GRM1_uc011eea.1_3'UTR	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	1072	Gln/Pro-rich.|Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCGCCACCTCCGCAGCACCTG	0.682													12	25					0	0	1	0	0	
UST	10090	broad.mit.edu	37	6	149285605	149285605	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:149285605T>C	uc003qmg.2	+	5	883	c.587T>C	c.(586-588)TTA>TCA	p.L196S	uc003qmh.1_Intron	NM_005715	NP_005706	Q9Y2C2	UST_HUMAN	uronyl-2-sulfotransferase	196	Lumenal (Potential).				protein sulfation	Golgi membrane|integral to membrane	sulfotransferase activity			ovary(2)	2		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.78e-10)|GBM - Glioblastoma multiforme(68;0.138)		AACCGGTTCTTATCCAACTAT	0.498													5	49					0	0	1	0	0	
C6orf97	80129	broad.mit.edu	37	6	151857473	151857473	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:151857473G>A	uc003qol.2	+	2	167	c.78G>A	c.(76-78)TCG>TCA	p.S26S		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	26											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		ATCATCTTTCGGAAGTCCCGG	0.433													23	69					0	0	1	0	0	
SYNE1	23345	broad.mit.edu	37	6	152583314	152583314	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:152583314A>G	uc010kiw.2	-	101	19427	c.18825T>C	c.(18823-18825)CCT>CCC	p.P6275P	SYNE1_uc010kiv.2_Silent_p.P799P|SYNE1_uc003qos.3_Silent_p.P799P|SYNE1_uc003qot.3_Silent_p.P6204P|SYNE1_uc003qou.3_Silent_p.P6275P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6275	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATAACACATCAGGTTTTTCGC	0.393										HNSCC(10;0.0054)			5	51					0	0	1	0	0	
TFB1M	51106	broad.mit.edu	37	6	155579107	155579107	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:155579107T>G	uc003qqj.3	-	7	968	c.904A>C	c.(904-906)AGC>CGC	p.S302R	TFB1M_uc003qqk.2_Intron|uc003qqi.1_5'Flank	NM_016020	NP_057104	Q8WVM0	TFB1M_HUMAN	transcription factor B1, mitochondrial	302					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	DNA binding|protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			skin(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;1.48e-12)|BRCA - Breast invasive adenocarcinoma(81;0.0131)		TCACAGAGGCTCTTAAAGTGT	0.468													10	130					0	0	1	0	0	
SLC22A2	6582	broad.mit.edu	37	6	160670319	160670319	+	Silent	SNP	G	A	A	rs147817271	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:160670319G>A	uc003qtf.2	-	4	941	c.771C>T	c.(769-771)TAC>TAT	p.Y257Y	SLC22A2_uc003qte.1_Silent_p.Y257Y|SLC22A2_uc003qth.1_3'UTR	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	257	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GAGGAAGTGCGTAAGCCACCC	0.458													13	122					0	0	1	0	0	
LPA	4018	broad.mit.edu	37	6	161006078	161006078	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:161006078G>A	uc003qtl.2	-	27	4409	c.4289C>T	c.(4288-4290)GCT>GTT	p.A1430V		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3938	Kringle 35.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATAGACATACGCATTTGGATA	0.433													57	172					0	0	1	0	0	
PDE10A	10846	broad.mit.edu	37	6	165846524	165846524	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:165846524T>A	uc003qun.2	-	8	842	c.601A>T	c.(601-603)ATT>TTT	p.I201F	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.I131F|PDE10A_uc003quo.2_Missense_Mutation_p.I211F	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	201	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	AGAATACCAATCAAGTCACCA	0.438													5	67					0	0	1	0	0	
THBS2	7058	broad.mit.edu	37	6	169637338	169637338	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:169637338C>T	uc003qwt.2	-	10	1652	c.1404G>A	c.(1402-1404)GTG>GTA	p.V468V		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	468	TSP type-1 2.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CCATCTGGGGCACTGGGGAGT	0.627													9	21					0	0	1	0	0	
PDGFA	5154	broad.mit.edu	37	7	550457	550457	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:550457G>A	uc003sir.2	-	4	1285	c.442C>T	c.(442-444)CGC>TGC	p.R148C	PDGFA_uc003sis.2_Missense_Mutation_p.R148C|PDGFA_uc003sit.1_Missense_Mutation_p.R162C	NM_002607	NP_002598	P04085	PDGFA_HUMAN	platelet-derived growth factor alpha isoform 1	148					actin cytoskeleton organization|angiogenesis|cell projection assembly|embryo development|hair follicle development|lung alveolus development|negative chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|organ morphogenesis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of DNA replication|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of MAP kinase activity|positive regulation of mesenchymal cell proliferation|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein kinase B signaling cascade|regulation of actin cytoskeleton organization|regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling|regulation of peptidyl-tyrosine phosphorylation|regulation of smooth muscle cell migration|skin development	cell surface|endoplasmic reticulum lumen|extracellular space|Golgi membrane|microvillus|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity				0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|Epithelial(4;1.1e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.7e-17)|all cancers(6;4.89e-15)		TTGACGCTGCGGTGGTGGACG	0.383													4	10					0	0	1	0	0	
HEATR2	54919	broad.mit.edu	37	7	819634	819634	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:819634G>A	uc010krz.1	+	12	2304	c.2284G>A	c.(2284-2286)GCA>ACA	p.A762T	HEATR2_uc003siz.2_Missense_Mutation_p.A630T|HEATR2_uc003sjb.2_Missense_Mutation_p.A142T|HEATR2_uc003sjc.2_Missense_Mutation_p.A187T	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	762	HEAT 9.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		TGTGAGGATGGCAGCCGCCTC	0.527													9	18					0	0	1	0	0	
PSMG3	84262	broad.mit.edu	37	7	1607366	1607366	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:1607366T>C	uc003skx.2	-	2	991	c.337A>G	c.(337-339)AGG>GGG	p.R113G	PSMG3_uc011jvx.1_Missense_Mutation_p.R113G|KIAA1908_uc003sla.2_5'Flank|KIAA1908_uc003sky.1_5'Flank|KIAA1908_uc003skz.1_5'Flank	NM_032302	NP_115678	Q9BT73	PSMG3_HUMAN	proteasome assembling chaperone 3	113											0		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.63e-15)		ATCACCTCCCTCAGCGCCTTC	0.612													8	61					0	0	1	0	0	
SNX8	29886	broad.mit.edu	37	7	2309235	2309235	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:2309235C>T	uc003slw.2	-	5	623	c.580G>A	c.(580-582)GGG>AGG	p.G194R		NM_013321	NP_037453	Q9Y5X2	SNX8_HUMAN	sorting nexin 8	194					cell communication|early endosome to Golgi transport|intracellular protein transport	early endosome membrane	phosphatidylinositol binding|protein binding			large_intestine(1)|ovary(1)	2		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0853)|OV - Ovarian serous cystadenocarcinoma(56;3.79e-14)		AATTCGTCCCCGACGCACTGT	0.368													14	40					0	0	1	0	0	
AMZ1	155185	broad.mit.edu	37	7	2752320	2752320	+	Silent	SNP	C	T	T	rs144828698		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:2752320C>T	uc003smr.1	+	7	1666	c.1305C>T	c.(1303-1305)GAC>GAT	p.D435D	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Silent_p.D184D	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	435							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		GAGCCGTGGACGCCCTCGACC	0.687													11	29					0	0	1	0	0	
CARD11	84433	broad.mit.edu	37	7	2976789	2976789	+	Missense_Mutation	SNP	C	T	T	rs79513324	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:2976789C>T	uc003smv.2	-	9	1627	c.1223G>A	c.(1222-1224)CGC>CAC	p.R408H		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	408	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCCAGCTCGCGGATCTGCTT	0.592			Mis		DLBCL								19	62					0	0	1	0	0	
ACTB	60	broad.mit.edu	37	7	5568128	5568128	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:5568128G>A	uc003sos.3	-	3	622	c.586C>T	c.(586-588)CGC>TGC	p.R196C	ACTB_uc003sor.3_Missense_Mutation_p.R74C|ACTB_uc003sot.3_Missense_Mutation_p.R196C|ACTB_uc003soq.3_Missense_Mutation_p.R74C|ACTB_uc010ksy.2_Missense_Mutation_p.R74C	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	196					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		CTGTAGCCGCGCTCGGTGAGG	0.612													29	75					0	0	1	0	0	
EIF2AK1	27102	broad.mit.edu	37	7	6066563	6066563	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:6066563C>T	uc003spp.2	-	14	1706	c.1560G>A	c.(1558-1560)CTG>CTA	p.L520L	EIF2AK1_uc003spq.2_Silent_p.L519L|EIF2AK1_uc011jwm.1_Silent_p.L396L	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	520	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		AGAGCTCTAGCAGGACCACAC	0.443													20	70					0	0	1	0	0	
C7orf26	79034	broad.mit.edu	37	7	6647637	6647637	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:6647637G>A	uc003sqo.1	+	6	1195	c.1195G>A	c.(1195-1197)GCC>ACC	p.A399T	C7orf26_uc003sqp.1_Missense_Mutation_p.A302T|C7orf26_uc003sqq.1_Missense_Mutation_p.A200T	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	399										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		GTCGCCTCACGCCGCGCTCCC	0.741													18	56					0	0	1	0	0	
TSPAN13	27075	broad.mit.edu	37	7	16815913	16815913	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:16815913C>T	uc003stq.2	+	2	383	c.141C>T	c.(139-141)GGC>GGT	p.G47G		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	47	Helical; (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		GAGTGGTCGGCGTGGTCATTG	0.488													17	47					0	0	1	0	0	
TMEM196	256130	broad.mit.edu	37	7	19765226	19765226	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:19765226G>T	uc011jyg.1	-	3	455	c.370C>A	c.(370-372)CTC>ATC	p.L124I	TMEM196_uc003sur.2_RNA	NM_152774	NP_689987	Q5HYL7	TM196_HUMAN	transmembrane protein 196	130						integral to membrane					0						CGACAAGTGAGCCAGGAAGAG	0.517													5	56					0.000602214	0.000618842	1	1	0	
KLHL7	55975	broad.mit.edu	37	7	23205486	23205486	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:23205486C>T	uc003svs.3	+	8	1399	c.1106C>T	c.(1105-1107)CCG>CTG	p.P369L	KLHL7_uc003svr.3_Missense_Mutation_p.P347L|KLHL7_uc011jys.1_Missense_Mutation_p.P293L|KLHL7_uc011jyt.1_Missense_Mutation_p.P144L|KLHL7_uc003svt.2_Missense_Mutation_p.P321L|KLHL7_uc011jyv.1_Missense_Mutation_p.P144L	NM_001031710	NP_001026880	Q8IXQ5	KLHL7_HUMAN	kelch-like 7 isoform 1	369	Kelch 2.					Golgi apparatus|nucleolus|plasma membrane					0						CTGGGTCCTCCGACACCTCGA	0.433													5	45					0	0	1	0	0	
C7orf31	136895	broad.mit.edu	37	7	25194759	25194759	+	Missense_Mutation	SNP	G	A	A	rs145873141	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:25194759G>A	uc003sxn.1	-	6	1027	c.466C>T	c.(466-468)CGC>TGC	p.R156C	C7orf31_uc003sxm.1_5'UTR	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	156											0						ATGGCGCCGCGACAGATGTGT	0.507													8	72					0	0	1	0	0	
NFE2L3	9603	broad.mit.edu	37	7	26225102	26225102	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:26225102G>A	uc003sxq.2	+	4	2056	c.1784G>A	c.(1783-1785)TGT>TAT	p.C595Y		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	595	Basic motif.				transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						GCGCAGAACTGTCGTAAACGC	0.368													3	32					0	0	1	0	0	
FAM188B	84182	broad.mit.edu	37	7	30821830	30821830	+	Splice_Site	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:30821830T>C	uc003tbt.2	+	3	496	c.419_splice	c.e3+2	p.R140_splice	FAM188B_uc010kwe.2_Splice_Site_p.R111_splice	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182												0						CAAAGCCAGGTATCTTTTCCC	0.234													3	22					0	0	1	0	0	
CCDC129	223075	broad.mit.edu	37	7	31617485	31617485	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:31617485C>T	uc003tcj.1	+	8	1600	c.607C>T	c.(607-609)CGA>TGA	p.R203*	CCDC129_uc011kad.1_Nonsense_Mutation_p.R213*|CCDC129_uc003tci.1_Nonsense_Mutation_p.R202*|CCDC129_uc011kae.1_Nonsense_Mutation_p.R229*|CCDC129_uc003tck.1_Nonsense_Mutation_p.R111*	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	203											0						AGGTCGTTTCCGACAGCTGGA	0.458													3	18					0	0	1	0	0	
KIAA0895	23366	broad.mit.edu	37	7	36423468	36423468	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:36423468C>A	uc003tfd.2	-	2	229	c.178G>T	c.(178-180)GAA>TAA	p.E60*		NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	60											0						GCCAAATAACCTGAGGTAGAG	0.259													8	40					0.000673444	0.000691623	1	1	0	
SFRP4	6424	broad.mit.edu	37	7	37951805	37951805	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:37951805G>A	uc003tfo.3	-	4	1093	c.707C>T	c.(706-708)CCG>CTG	p.P236L		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	236	NTR.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						TGTAATGAGCGGGACTTGAGT	0.493													5	129					0	0	1	0	0	
GLI3	2737	broad.mit.edu	37	7	42012169	42012169	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:42012169G>T	uc011kbh.1	-	13	1961	c.1870C>A	c.(1870-1872)CTC>ATC	p.L624I	GLI3_uc011kbg.1_Missense_Mutation_p.L565I	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	624	C2H2-type 5.				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TGTTTCCGGAGGGAGCTTGGG	0.537									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				11	38					0.00010058	0.000104233	1	1	0	
GLI3	2737	broad.mit.edu	37	7	42063102	42063102	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:42063102C>T	uc011kbh.1	-	10	1553	c.1462G>A	c.(1462-1464)GCG>ACG	p.A488T	GLI3_uc011kbg.1_Missense_Mutation_p.A429T	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	488	C2H2-type 1.				negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						AACTCCCTCGCGCAGCCTTCC	0.532									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				8	57					0	0	1	0	0	
IGFBP1	3484	broad.mit.edu	37	7	45928343	45928343	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:45928343C>T	uc003tnp.2	+	1	385	c.92C>T	c.(91-93)GCG>GTG	p.A31V	IGFBP1_uc003tno.3_Missense_Mutation_p.A31V|IGFBP1_uc010kyn.2_Missense_Mutation_p.A31V	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	31	IGFBP N-terminal.					extracellular space	insulin-like growth factor binding			lung(1)	1						TGGCAGTGCGCGCCCTGCTCC	0.721													3	10					0	0	1	0	0	
TNS3	64759	broad.mit.edu	37	7	47385927	47385927	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:47385927C>T	uc003tnv.2	-	18	2676	c.2309G>A	c.(2308-2310)GGG>GAG	p.G770E	TNS3_uc003tnw.2_Missense_Mutation_p.G770E	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	770						focal adhesion	protein binding			ovary(4)	4						CCTGAGTCTCCCGCCCAGGGG	0.602													14	49					0	0	1	0	0	
DDC	1644	broad.mit.edu	37	7	50607613	50607613	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:50607613C>A	uc003tpf.3	-	3	401	c.315G>T	c.(313-315)TGG>TGT	p.W105C	DDC_uc010kza.2_Missense_Mutation_p.W105C|DDC_uc003tpg.3_Missense_Mutation_p.W105C	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	105	1.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	GGACCCTCACCCAGGAGAAGC	0.647													7	16					0.335167	0.335363	1	1	0	
Unknown	0	broad.mit.edu	37	7	55840937	55840937	+	RNA	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:55840937T>C	uc003tqy.2	+	1		c.66T>C								Homo sapiens mRNA for L-3-phosphoserine-phosphatase homologue.																		CGCCAAATGGTATATCACTGA	0.363													7	104					0	0	1	0	0	
CCT6A	908	broad.mit.edu	37	7	56126114	56126114	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:56126114C>T	uc003trl.1	+	7	949	c.785C>T	c.(784-786)GCT>GTT	p.A262V	PSPH_uc003trj.2_Intron|CCT6A_uc003trm.1_Missense_Mutation_p.A217V|CCT6A_uc011kcu.1_Missense_Mutation_p.A231V|SNORA15_uc003trn.1_5'Flank	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	262					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTCGTGAAAGCTGAAAGAAAA	0.308													4	35					0	0	1	0	0	
ZNF479	90827	broad.mit.edu	37	7	57188194	57188194	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:57188194A>G	uc010kzo.2	-	5	1199	c.928T>C	c.(928-930)TCA>CCA	p.S310P		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	310	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			GTGAGGGTTGAGGATACGCTA	0.468													4	66					0	0	1	0	0	
ZNF479	90827	broad.mit.edu	37	7	57194337	57194337	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:57194337T>C	uc010kzo.2	-	3	399	c.128A>G	c.(127-129)GAT>GGT	p.D43G		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	43	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TAACATCACATCTCTATATAA	0.383													6	138					0	0	1	0	0	
GUSB	2990	broad.mit.edu	37	7	65445384	65445384	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:65445384C>T	uc003tun.2	-	2	299	c.223G>A	c.(223-225)GTG>ATG	p.V75M	GUSB_uc011kdt.1_Missense_Mutation_p.V75M|GUSB_uc010kzw.1_Translation_Start_Site	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	75					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						GGCATGTCCACGGTGGGGCCT	0.453													8	16					0	0	1	0	0	
FZD9	8326	broad.mit.edu	37	7	72849269	72849269	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:72849269C>T	uc003tyb.2	+	1	1161	c.932C>T	c.(931-933)ACG>ATG	p.T311M		NM_003508	NP_003499	O00144	FZD9_HUMAN	frizzled 9 precursor	311	Extracellular (Potential).				B cell differentiation|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|neuroblast proliferation|vasculature development	cell surface|filopodium membrane|integral to membrane|perinuclear region of cytoplasm	G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CTGGAGAACACGGGCTGCACG	0.667													31	73					0	0	1	0	0	
LOC100132832	100132832	broad.mit.edu	37	7	76669384	76669384	+	RNA	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:76669384G>A	uc003ufy.2	+	1		c.588G>A			PMS2L11_uc011kgn.1_RNA	NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						AAAACAGTCTGGATGCTGGTG	0.408													36	596					0	0	1	0	0	
MAGI2	9863	broad.mit.edu	37	7	78636484	78636484	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:78636484A>C	uc003ugx.2	-	2	594	c.340T>G	c.(340-342)TTA>GTA	p.L114V	MAGI2_uc003ugy.2_Missense_Mutation_p.L114V	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	114	Guanylate kinase-like.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGAAATCGTAAGTTGAGGTAG	0.388													4	79					0	0	1	0	0	
GRM3	2913	broad.mit.edu	37	7	86468905	86468905	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:86468905G>C	uc003uid.2	+	4	3174	c.2075G>C	c.(2074-2076)TGC>TCC	p.C692S	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.C564S|GRM3_uc010leh.2_Missense_Mutation_p.C284S	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	692	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GTTTTCATCTGCCTGGGTCTG	0.542													3	38					0	0	1	0	0	
ADAM22	53616	broad.mit.edu	37	7	87759712	87759712	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:87759712C>A	uc003ujn.2	+	10	842	c.763C>A	c.(763-765)CAT>AAT	p.H255N	ADAM22_uc003ujj.1_Missense_Mutation_p.H255N|ADAM22_uc003ujk.1_Missense_Mutation_p.H255N|ADAM22_uc003ujl.1_Missense_Mutation_p.H255N|ADAM22_uc003ujm.2_Missense_Mutation_p.H255N|ADAM22_uc003ujo.2_Missense_Mutation_p.H255N|ADAM22_uc003ujp.1_Missense_Mutation_p.H307N	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	255	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			GTTTAAAAAACATCGGCTTTC	0.378													7	64					5.18039e-06	5.44768e-06	1	1	0	
ASB4	51666	broad.mit.edu	37	7	95167036	95167036	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:95167036T>C	uc011kij.1	+	5	1246	c.1246T>C	c.(1246-1248)TAC>CAC	p.Y416H		NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	416	SOCS box.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			ATTGAAAAAGTACTTGCTTTT	0.408													6	73					0	0	1	0	0	
DLX5	1749	broad.mit.edu	37	7	96653686	96653686	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:96653686C>T	uc003uon.2	-	1	458	c.250G>A	c.(250-252)GCC>ACC	p.A84T	DLX5_uc011kim.1_Missense_Mutation_p.A84T	NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	84					cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					TAGCTCCCGGCGGAGCCGTTC	0.617													13	32					0	0	1	0	0	
PTCD1	26024	broad.mit.edu	37	7	99027333	99027333	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:99027333C>T	uc003uqh.2	-	4	822	c.691G>A	c.(691-693)GCC>ACC	p.A231T	PTCD1_uc011kiw.1_Missense_Mutation_p.A280T	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	231	PPR 3.									ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			AGCTTCAGGGCGCTCTGTAGA	0.587													6	33					0	0	1	0	0	
ZSCAN21	7589	broad.mit.edu	37	7	99654893	99654893	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:99654893G>A	uc003uso.2	+	2	408	c.264G>A	c.(262-264)CTG>CTA	p.L88L	ZSCAN21_uc011kje.1_Silent_p.L87L|ZSCAN21_uc003usn.1_Silent_p.L87L	NM_145914	NP_666019	Q9Y5A6	ZSC21_HUMAN	zinc finger protein 38	88	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGGAGCTACTGGTGCTGGAGC	0.637													6	46					0	0	1	0	0	
LRCH4	4034	broad.mit.edu	37	7	100175478	100175478	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:100175478G>A	uc003uvj.2	-	8	1059	c.1006C>T	c.(1006-1008)CGG>TGG	p.R336W	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjw.1_5'UTR|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	336					nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGGGTCCCCGGGGCTCCCGG	0.607													12	31					0	0	1	0	0	
EPHB4	2050	broad.mit.edu	37	7	100410487	100410487	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:100410487A>G	uc003uwn.1	-	12	2491	c.2000T>C	c.(1999-2001)ATC>ACC	p.I667T	EPHB4_uc003uwm.1_Missense_Mutation_p.I574T|EPHB4_uc010lhj.1_Missense_Mutation_p.I667T	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	667	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					CTGGCCCATGATGGAGGCCTC	0.602													7	97					0	0	1	0	0	
MUC17	140453	broad.mit.edu	37	7	100678679	100678679	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:100678679C>T	uc003uxp.1	+	3	4035	c.3982C>T	c.(3982-3984)CCA>TCA	p.P1328S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1328	Extracellular (Potential).|20.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TACCAGCATGCCAACCTCAAC	0.458													76	219					0	0	1	0	0	
MUC17	140453	broad.mit.edu	37	7	100680822	100680822	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:100680822G>A	uc003uxp.1	+	3	6178	c.6125G>A	c.(6124-6126)CGG>CAG	p.R2042Q	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2042	Extracellular (Potential).|32.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTAGTGAACGGACCACTCCA	0.507													71	148					0	0	1	0	0	
TRIM56	81844	broad.mit.edu	37	7	100732127	100732127	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:100732127G>T	uc003uxq.2	+	3	1765	c.1534G>T	c.(1534-1536)GGG>TGG	p.G512W	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	512					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					CCGGATCACCGGGCTCTGTCC	0.652													11	89					0.00010058	0.000104233	1	1	0	
CUX1	1523	broad.mit.edu	37	7	101837172	101837172	+	Splice_Site	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:101837172T>C	uc003uyx.3	+	13	1163	c.1125_splice	c.e13+2	p.Q375_splice	CUX1_uc003uys.3_Splice_Site_p.Q386_splice|CUX1_uc003uyt.2_Splice_Site_p.Q386_splice|CUX1_uc011kkn.1_Splice_Site_p.Q347_splice|CUX1_uc003uyw.2_Splice_Site_p.Q340_splice|CUX1_uc003uyv.2_Splice_Site_p.Q370_splice|CUX1_uc003uyu.2_Splice_Site_p.Q384_splice	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a						negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GGGACACAGGTACGTGTCTCA	0.493													4	30					0	0	1	0	0	
FBXL13	222235	broad.mit.edu	37	7	102604003	102604003	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:102604003C>T	uc003vaq.2	-	8	1128	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	FBXL13_uc010liq.1_Missense_Mutation_p.R49Q|FBXL13_uc010lir.1_Missense_Mutation_p.R234Q|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R234Q|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	234	LRR 1.										0						AGTTTTGGGTCGGAGAAGACA	0.338													13	59					0	0	1	0	0	
COG5	10466	broad.mit.edu	37	7	106876896	106876896	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:106876896T>G	uc003ved.2	-	17	2645	c.2120A>C	c.(2119-2121)CAG>CCG	p.Q707P	COG5_uc003vec.2_Missense_Mutation_p.Q728P|COG5_uc003vee.2_Missense_Mutation_p.Q728P	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	707					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TCAATGTACCTGTGCAAAATC	0.378													8	61					0	0	1	0	0	
DOCK4	9732	broad.mit.edu	37	7	111368525	111368525	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:111368525C>T	uc003vfx.2	-	52	5975	c.5706G>A	c.(5704-5706)CCG>CCA	p.P1902P	DOCK4_uc011kml.1_Silent_p.P783P|DOCK4_uc011kmm.1_Silent_p.P771P|DOCK4_uc003vfw.2_Silent_p.P1314P|DOCK4_uc003vfy.2_Silent_p.P1947P|DOCK4_uc003vfv.2_Silent_p.P215P	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1902	Pro-rich.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				AGACGCTGTACGGGGGCGGAG	0.716													12	45					0	0	1	0	0	
FAM3C	10447	broad.mit.edu	37	7	121019010	121019010	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:121019010A>G	uc003vjx.2	-	3	320	c.72T>C	c.(70-72)TCT>TCC	p.S24S	FAM3C_uc010lkm.2_Silent_p.S24S	NM_014888	NP_055703	Q92520	FAM3C_HUMAN	family with sequence similarity 3, member C	24					multicellular organismal development	cytoplasmic membrane-bounded vesicle|extracellular region	cytokine activity				0	all_neural(327;0.117)					CAAATACTTGAGAAATAACAT	0.318													7	67					0	0	1	0	0	
CADPS2	93664	broad.mit.edu	37	7	122194640	122194640	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:122194640A>G	uc010lkp.2	-	8	1602	c.1439T>C	c.(1438-1440)GTG>GCG	p.V480A	CADPS2_uc003vkg.3_Missense_Mutation_p.V180A|CADPS2_uc010lkq.2_Missense_Mutation_p.V480A	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	480					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						ATCCATTCGCACTGCCAGTTT	0.333													6	52					0	0	1	0	0	
GPR37	2861	broad.mit.edu	37	7	124404242	124404242	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:124404242C>T	uc003vli.2	-	1	1440	c.789G>A	c.(787-789)GCG>GCA	p.A263A		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	263	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GACACATGACCGCGTAGGCTC	0.602													12	39					0	0	1	0	0	
GCC1	79571	broad.mit.edu	37	7	127222705	127222705	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:127222705C>T	uc003vma.2	-	2	2109	c.1691G>A	c.(1690-1692)CGG>CAG	p.R564Q		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	564	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						CAGCTCCTGCCGGTGGAGCTG	0.637													9	40					0	0	1	0	0	
FSCN3	29999	broad.mit.edu	37	7	127235583	127235583	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:127235583G>A	uc003vmd.1	+	2	586	c.367G>A	c.(367-369)GTG>ATG	p.V123M	FSCN3_uc003vmc.1_Missense_Mutation_p.V78M|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_Translation_Start_Site|FSCN3_uc010llc.1_Missense_Mutation_p.V123M	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	123						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TGGCAAGGACGTGTTTTGCAC	0.567													32	44					0	0	1	0	0	
PAX4	5078	broad.mit.edu	37	7	127255502	127255502	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:127255502G>T	uc010lld.1	-	1	279	c.73C>A	c.(73-75)CTA>ATA	p.L25I	PAX4_uc003vmf.2_5'UTR|PAX4_uc003vmg.1_Missense_Mutation_p.L25I|PAX4_uc003vmh.2_5'UTR	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	33	Paired.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTGACTGCTAGCCGCACAATC	0.592													4	96					0.00909568	0.00923047	1	1	0	
IMPDH1	3614	broad.mit.edu	37	7	128035288	128035288	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:128035288C>A	uc011kol.1	-	10	1153	c.1047G>T	c.(1045-1047)AAG>AAT	p.K349N	IMPDH1_uc011kom.1_Missense_Mutation_p.K344N|IMPDH1_uc003vmt.2_Missense_Mutation_p.K324N|IMPDH1_uc003vmu.2_Missense_Mutation_p.K434N|IMPDH1_uc003vmw.2_Missense_Mutation_p.K424N|IMPDH1_uc011kon.1_Missense_Mutation_p.K401N|IMPDH1_uc003vmv.2_Missense_Mutation_p.K398N|IMPDH1_uc003vmx.2_Missense_Mutation_p.K357N|IMPDH1_uc003vmy.2_Missense_Mutation_p.K365N|uc011koo.1_5'Flank	NM_001142573	NP_001136045	P20839	IMDH1_HUMAN	inosine monophosphate dehydrogenase 1 isoform e	349					GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	DNA binding|IMP dehydrogenase activity|metal ion binding			skin(2)|lung(1)|central_nervous_system(1)	4					Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)|Ribavirin(DB00811)|Thioguanine(DB00352)	ACTCAGCCACCTTGTACACAG	0.647													9	95					4.68919e-08	4.99247e-08	1	1	0	
FLNC	2318	broad.mit.edu	37	7	128488118	128488118	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:128488118C>T	uc003vnz.3	+	26	4785	c.4576C>T	c.(4576-4578)CGC>TGC	p.R1526C	FLNC_uc003voa.3_Missense_Mutation_p.R1526C	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1526	Filamin 13.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGAGGTGCCACGCAGGTGAGG	0.652													4	9					0	0	1	0	0	
FLNC	2318	broad.mit.edu	37	7	128488733	128488733	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:128488733C>T	uc003vnz.3	+	27	4908	c.4699C>T	c.(4699-4701)CGG>TGG	p.R1567W	FLNC_uc003voa.3_Missense_Mutation_p.R1567W	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1567	Filamin 14.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CATCGACGCACGGGACGCGGG	0.662													16	76					0	0	1	0	0	
DGKI	9162	broad.mit.edu	37	7	137304593	137304593	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:137304593T>C	uc003vtt.2	-	8	971	c.970A>G	c.(970-972)ATC>GTC	p.I324V	DGKI_uc003vtu.2_Missense_Mutation_p.I24V	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	324					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ACCTTAATGATCCAAGTGGGC	0.512													3	126					0	0	1	0	0	
WEE2	494551	broad.mit.edu	37	7	141418950	141418950	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:141418950G>A	uc003vwn.2	+	4	1070	c.664G>A	c.(664-666)GAA>AAA	p.E222K	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	222	ATP (By similarity).|Protein kinase.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					TGGGGTTGGCGAATTTGGTAC	0.358													7	97					0	0	1	0	0	
MGAM	8972	broad.mit.edu	37	7	141747669	141747669	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:141747669G>A	uc003vwy.2	+	22	2637	c.2583G>A	c.(2581-2583)ACG>ACA	p.T861T		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	861	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATGGGGAAACGAAGGGTGAGC	0.458													9	12					0	0	1	0	0	
CNTNAP2	26047	broad.mit.edu	37	7	146536911	146536911	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:146536911G>A	uc003weu.1	+	3	833	c.317G>A	c.(316-318)AGC>AAC	p.S106N		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	106	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGTATAGCAGCTCAGATTGG	0.493										HNSCC(39;0.1)			4	50					0	0	1	0	0	
CUL1	8454	broad.mit.edu	37	7	148427309	148427309	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:148427309A>G	uc010lpg.2	+	2	621	c.95A>G	c.(94-96)TAC>TGC	p.Y32C	CUL1_uc003wey.2_Missense_Mutation_p.Y32C|CUL1_uc003wez.2_5'UTR	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	32					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			CAGCAGGTGTACACACGGCAG	0.537													14	84					0	0	1	0	0	
CUL1	8454	broad.mit.edu	37	7	148484179	148484179	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:148484179C>T	uc010lpg.2	+	13	1972	c.1446C>T	c.(1444-1446)GAC>GAT	p.D482D	CUL1_uc003wey.2_Silent_p.D482D|CUL1_uc003wez.2_Silent_p.D372D|CUL1_uc003wfa.2_Silent_p.D143D	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	482					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GTGCAAGTGACGATGCCGAAG	0.413													9	58					0	0	1	0	0	
CUL1	8454	broad.mit.edu	37	7	148489867	148489867	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:148489867C>T	uc010lpg.2	+	17	2382	c.1856C>T	c.(1855-1857)GCC>GTC	p.A619V	CUL1_uc003wey.2_Missense_Mutation_p.A619V|CUL1_uc003wez.2_Missense_Mutation_p.A509V|CUL1_uc003wfa.2_Missense_Mutation_p.A280V	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	619					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			ACGGAAGATGCCTACACTGTG	0.463													11	28					0	0	1	0	0	
ABCB8	11194	broad.mit.edu	37	7	150742328	150742328	+	Silent	SNP	C	T	T	rs144165657	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:150742328C>T	uc003wil.3	+	17	2193	c.2100C>T	c.(2098-2100)GGC>GGT	p.G700G	ABCB8_uc010lpx.2_Silent_p.G658G|ABCB8_uc011kvd.1_Silent_p.G595G|ABCB8_uc003wim.3_Silent_p.G478G|ABCB8_uc003wik.3_Silent_p.G683G	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	700	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TGAAGAAAGGCGGGCTATACG	0.632													23	45					0	0	1	0	0	
CHPF2	54480	broad.mit.edu	37	7	150935141	150935141	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:150935141G>A	uc003wjr.1	+	4	3206	c.1693G>A	c.(1693-1695)GCT>ACT	p.A565T	CHPF2_uc003wjq.1_Missense_Mutation_p.A557T|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	565	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						GGCCTGGCTCGCTGTGCGAGC	0.617													12	28					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151873936	151873936	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:151873936T>C	uc003wla.2	-	38	8821	c.8602A>G	c.(8602-8604)ACT>GCT	p.T2868A	MLL3_uc003wkz.2_Missense_Mutation_p.T1929A|MLL3_uc003wky.2_Missense_Mutation_p.T377A	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2868					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGCAAAGAAGTCTTTTCTCCA	0.408			N		medulloblastoma								7	75					0	0	1	0	0	
MLL3	58508	broad.mit.edu	37	7	151874713	151874713	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:151874713G>A	uc003wla.2	-	38	8044	c.7825C>T	c.(7825-7827)CGA>TGA	p.R2609*	MLL3_uc003wkz.2_Nonsense_Mutation_p.R1670*|MLL3_uc003wky.2_Nonsense_Mutation_p.R118*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2609	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding	p.R2609*(1)		large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGAGGTCGTCGCATGGGGTCT	0.532			N		medulloblastoma								16	108					0	0	1	0	0	
HTR5A	3361	broad.mit.edu	37	7	154862764	154862764	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:154862764C>T	uc003wlu.1	+	1	219	c.155C>T	c.(154-156)GCG>GTG	p.A52V	uc011kvt.1_Missense_Mutation_p.A84T|uc003wlt.2_Missense_Mutation_p.A84T	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	52	Helical; Name=1; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		TTTCTGGTGGCGGCGACGTTC	0.647													6	42					0	0	1	0	0	
PTPRN2	5799	broad.mit.edu	37	7	157369377	157369377	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr7:157369377G>A	uc003wno.2	-	19	2832	c.2711C>T	c.(2710-2712)ACG>ATG	p.T904M	PTPRN2_uc003wnp.2_Missense_Mutation_p.T887M|PTPRN2_uc003wnq.2_Missense_Mutation_p.T875M|PTPRN2_uc003wnr.2_Missense_Mutation_p.T866M|PTPRN2_uc011kwa.1_Missense_Mutation_p.T927M|uc011kwb.1_5'Flank|MIR153-2_hsa-mir-153-2|MI0000464_5'Flank	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	904	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GTGGAACTGCGTCACGGTGCG	0.607													8	11					0	0	1	0	0	
ARHGEF10	9639	broad.mit.edu	37	8	1842674	1842674	+	Missense_Mutation	SNP	C	T	T	rs144726787		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:1842674C>T	uc003wpr.2	+	13	1554	c.1376C>T	c.(1375-1377)GCG>GTG	p.A459V	ARHGEF10_uc003wpq.1_Missense_Mutation_p.A484V|ARHGEF10_uc003wps.2_Missense_Mutation_p.A421V|ARHGEF10_uc003wpt.2_Missense_Mutation_p.A335V|ARHGEF10_uc003wpv.2_Missense_Mutation_p.A192V|ARHGEF10_uc010lre.2_Missense_Mutation_p.A139V	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	484	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TTTCAGATCGCGCTGGCCAGC	0.547													9	54					0	0	1	0	0	
RP1L1	94137	broad.mit.edu	37	8	10466430	10466430	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:10466430A>G	uc003wtc.2	-	4	5407	c.5178T>C	c.(5176-5178)GCT>GCC	p.A1726A		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1726					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCCCTCCCTCAGCTCCCTGGA	0.647													13	162					0	0	1	0	0	
RP1L1	94137	broad.mit.edu	37	8	10467747	10467747	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:10467747C>T	uc003wtc.2	-	4	4090	c.3861G>A	c.(3859-3861)TCG>TCA	p.S1287S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1287					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCTCCAGGTTCGAGCTCGCCC	0.408													12	181					0	0	1	0	0	
EFHA2	286097	broad.mit.edu	37	8	16884826	16884826	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:16884826G>A	uc003wxd.2	+	1	80	c.38G>A	c.(37-39)CGG>CAG	p.R13Q		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	13						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		CCGCCACCCCGGGTGTCTCCT	0.657													4	39					0	0	1	0	0	
CNOT7	29883	broad.mit.edu	37	8	17100550	17100550	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:17100550A>G	uc003wxf.1	-	3	430	c.262T>C	c.(262-264)TAC>CAC	p.Y88H	CNOT7_uc003wxg.1_Missense_Mutation_p.Y88H|CNOT7_uc003wxh.1_Missense_Mutation_p.Y88H|CNOT7_uc003wxi.1_Missense_Mutation_p.Y88H	NM_013354	NP_037486	Q9UIV1	CNOT7_HUMAN	CCR4-NOT transcription complex, subunit 7	88					carbohydrate metabolic process|nuclear-transcribed mRNA poly(A) tail shortening	CCR4-NOT complex|cytoplasmic mRNA processing body|cytosol	nucleic acid binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1				Colorectal(111;0.0523)|COAD - Colon adenocarcinoma(73;0.209)		CCTGGAGGGTATTCTCCTTGC	0.333													11	121					0	0	1	0	0	
MTMR7	9108	broad.mit.edu	37	8	17159727	17159727	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:17159727T>A	uc003wxm.2	-	13	1795	c.1556A>T	c.(1555-1557)GAT>GTT	p.D519V	MTMR7_uc003wxn.2_Missense_Mutation_p.D298V|MTMR7_uc011kya.1_Missense_Mutation_p.D153V|MTMR7_uc011kyb.1_Missense_Mutation_p.D110V	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	519							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CATTAGGTAATCTGTAACTGA	0.448													5	139					0	0	1	0	0	
LZTS1	11178	broad.mit.edu	37	8	20110716	20110716	+	Silent	SNP	C	T	T	rs141673059		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:20110716C>T	uc003wzr.2	-	2	837	c.726G>A	c.(724-726)TCG>TCA	p.S242S	LZTS1_uc010ltg.1_Silent_p.S242S	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	242					cell cycle|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		CTGCCTTGTTCGAGTGGCCCA	0.627													29	62					0	0	1	0	0	
DOK2	9046	broad.mit.edu	37	8	21767412	21767412	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:21767412A>C	uc003wzy.1	-	5	742	c.649T>G	c.(649-651)TGC>GGC	p.C217G	DOK2_uc003wzx.1_Missense_Mutation_p.C217G|DOK2_uc003wzz.1_Missense_Mutation_p.C63G|DOK2_uc010lth.1_Missense_Mutation_p.C63G	NM_003974	NP_003965	O60496	DOK2_HUMAN	docking protein 2	217	IRS-type PTB.				blood coagulation|leukocyte migration	cytosol	identical protein binding|insulin receptor binding				0				Colorectal(74;0.0145)|COAD - Colon adenocarcinoma(73;0.0608)		CCAGAGACGCAGCGACGGCCT	0.522													15	43					0	0	1	0	0	
HR	55806	broad.mit.edu	37	8	21978706	21978706	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:21978706G>A	uc003xas.2	-	10	2904	c.2239C>T	c.(2239-2241)CGT>TGT	p.R747C	HR_uc003xat.2_Missense_Mutation_p.R747C	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	747							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		CGGCCAGCACGGTCCTCTGCT	0.627													19	211					0	0	1	0	0	
PHYHIP	9796	broad.mit.edu	37	8	22079025	22079025	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:22079025G>A	uc003xbk.3	-	6	1528	c.834C>T	c.(832-834)CAC>CAT	p.H278H	PHYHIP_uc003xbj.3_Silent_p.H278H	NM_001099335	NP_001092805	Q92561	PHYIP_HUMAN	phytanoyl-CoA 2-hydroxylase interacting protein	278											0				Colorectal(74;0.0152)|COAD - Colon adenocarcinoma(73;0.0629)		GGTCCTGGGCGTGGCGGAAGA	0.632													22	90					0	0	1	0	0	
POLR3D	661	broad.mit.edu	37	8	22105999	22105999	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:22105999C>T	uc003xbl.2	+	6	575	c.492C>T	c.(490-492)CTC>CTT	p.L164L	POLR3D_uc003xbm.2_Silent_p.L164L|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	164					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		GGCAGTTCCTCGATGACCCCG	0.522													15	199					0	0	1	0	0	
POLR3D	661	broad.mit.edu	37	8	22106136	22106136	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:22106136T>C	uc003xbl.2	+	6	712	c.629T>C	c.(628-630)ATG>ACG	p.M210T	POLR3D_uc003xbm.2_Missense_Mutation_p.M210T|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	210					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		GAAGAGGACATGGAGGTGGAC	0.527													10	152					0	0	1	0	0	
KIAA1967	57805	broad.mit.edu	37	8	22476350	22476350	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:22476350C>A	uc003xch.2	+	19	2480	c.2343C>A	c.(2341-2343)GAC>GAA	p.D781E	KIAA1967_uc003xci.2_Missense_Mutation_p.D781E|KIAA1967_uc003xcj.1_Missense_Mutation_p.D450E	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	781					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		GAAACCTGGACCTGCTGCCCC	0.607													12	181					2.23348e-06	2.35161e-06	1	1	0	
ENTPD4	9583	broad.mit.edu	37	8	23294634	23294634	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:23294634C>T	uc003xdl.2	-	10	1351	c.1187G>A	c.(1186-1188)CGA>CAA	p.R396Q	ENTPD4_uc011kzu.1_Missense_Mutation_p.R388Q|ENTPD4_uc003xdm.2_Missense_Mutation_p.R388Q|ENTPD4_uc011kzv.1_Missense_Mutation_p.R396Q	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	396	Lumenal (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		GATAGTCTCTCGACACAGGTC	0.468													20	74					0	0	1	0	0	
ADAM7	8756	broad.mit.edu	37	8	24349501	24349501	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:24349501C>A	uc003xeb.2	+	14	1555	c.1442C>A	c.(1441-1443)CCT>CAT	p.P481H	ADAM7_uc003xec.2_Missense_Mutation_p.P253H	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	481	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CCTGCCTGTCCTAAGGACCAG	0.473													24	87					3.6726e-16	4.00477e-16	1	1	0	
CHRNA2	1135	broad.mit.edu	37	8	27320543	27320543	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:27320543C>T	uc010lur.2	-	6	2026	c.1417G>A	c.(1417-1419)GTG>ATG	p.V473M	CHRNA2_uc011lal.1_Missense_Mutation_p.V458M|CHRNA2_uc010lus.2_Missense_Mutation_p.V275M	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	473	Cytoplasmic.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	ATGTAGTGCACACCTTCCAGT	0.642													14	169					0	0	1	0	0	
INTS9	55756	broad.mit.edu	37	8	28638343	28638343	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:28638343T>C	uc003xha.2	-	12	1566	c.1267A>G	c.(1267-1269)ACG>GCG	p.T423A	INTS9_uc011lav.1_Missense_Mutation_p.T399A|INTS9_uc011law.1_Missense_Mutation_p.T402A|INTS9_uc011lax.1_Missense_Mutation_p.T316A|INTS9_uc010lvc.2_RNA	NM_018250	NP_060720	Q9NV88	INT9_HUMAN	integrator complex subunit 9 isoform 1	423					snRNA processing	integrator complex	protein binding			central_nervous_system(1)|pancreas(1)	2		Ovarian(32;0.0439)		KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.152)		CACTTACCCGTGAATATGACG	0.502													4	65					0	0	1	0	0	
HMBOX1	79618	broad.mit.edu	37	8	28906535	28906535	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:28906535T>C	uc003xhd.3	+	9	1437	c.1095T>C	c.(1093-1095)GAT>GAC	p.D365D	HMBOX1_uc010lvd.2_Silent_p.D365D|HMBOX1_uc003xhc.3_Silent_p.D364D|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Silent_p.D365D|HMBOX1_uc011lay.1_Silent_p.D364D|HMBOX1_uc003xhf.2_Silent_p.D351D|HMBOX1_uc003xhg.2_Silent_p.D352D	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	365					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		CAAACAGTGATGATGTCGACG	0.517													10	236					0	0	1	0	0	
DCTN6	10671	broad.mit.edu	37	8	30032612	30032612	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:30032612G>A	uc003xhy.2	+	3	187	c.100G>A	c.(100-102)GTG>ATG	p.V34M		NM_006571	NP_006562	O00399	DCTN6_HUMAN	dynactin 6	34						centrosome	transferase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.099)|Kidney(114;0.119)		ACCTCGGACAGTGATCCACCC	0.458													5	40					0	0	1	0	0	
WRN	7486	broad.mit.edu	37	8	30969166	30969166	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:30969166T>C	uc003xio.3	+	19	2912	c.2124T>C	c.(2122-2124)TCT>TCC	p.S708S	WRN_uc010lvk.2_Silent_p.S175S	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	708	Helicase ATP-binding.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		CTGCAAGTTCTTCAATCCGGG	0.388			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				17	88					0	0	1	0	0	
WRN	7486	broad.mit.edu	37	8	30982058	30982058	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:30982058G>A	uc003xio.3	+	22	3439	c.2651G>A	c.(2650-2652)CGT>CAT	p.R884H	WRN_uc010lvk.2_Missense_Mutation_p.R351H	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	884	Helicase C-terminal.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		ACTGAGATACGTAATGAGAAG	0.289			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				12	57					0	0	1	0	0	
C8orf41	80185	broad.mit.edu	37	8	33369574	33369574	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:33369574A>G	uc003xjl.3	-	1	1083	c.558T>C	c.(556-558)GGT>GGC	p.G186G	C8orf41_uc003xjk.3_Silent_p.G186G|C8orf41_uc010lvv.2_Silent_p.G186G|C8orf41_uc003xjm.3_Silent_p.G186G|C8orf41_uc003xjn.1_Silent_p.G186G	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	186							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		CTGCCACAGAACCGCATTCAG	0.493													5	327					0	0	1	0	0	
UNC5D	137970	broad.mit.edu	37	8	35606112	35606112	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:35606112G>A	uc003xjr.1	+	12	2162	c.1834G>A	c.(1834-1836)GTC>ATC	p.V612I	UNC5D_uc003xjs.1_Missense_Mutation_p.V607I|UNC5D_uc003xju.1_Missense_Mutation_p.V188I	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	612	ZU5.|Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		AGACATGATCGTCACCACTCC	0.493													30	136					0	0	1	0	0	
STAR	6770	broad.mit.edu	37	8	38006175	38006175	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:38006175C>T	uc003xkv.1	-	2	426	c.162G>A	c.(160-162)CGG>CGA	p.R54R	STAR_uc010lwc.1_Intron	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	54					C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		GAGAGCTCCGCCGCCGAACCT	0.647													8	76					0	0	1	0	0	
TACC1	6867	broad.mit.edu	37	8	38684796	38684796	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:38684796C>T	uc010lwp.2	+	5	1942	c.1563C>T	c.(1561-1563)GCC>GCT	p.A521A	TACC1_uc011lby.1_Silent_p.A326A|TACC1_uc003xma.2_5'UTR|TACC1_uc003xlz.2_Silent_p.A326A|TACC1_uc003xmc.3_Silent_p.A325A|TACC1_uc011lbz.1_Silent_p.A537A|TACC1_uc003xmb.3_Silent_p.A476A|TACC1_uc003xme.1_Silent_p.A95A|TACC1_uc003xmd.1_Silent_p.A83A|TACC1_uc010lwo.1_Silent_p.A83A|TACC1_uc003xmf.3_Silent_p.A111A|TACC1_uc011lca.1_Silent_p.A533A|TACC1_uc011lcb.1_Silent_p.A326A|TACC1_uc011lcc.1_Silent_p.A326A|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Silent_p.A338A|TACC1_uc010lwq.2_Silent_p.A338A	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	521					cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			CAGCTGGTGCCGAGGTGAAAG	0.468													18	90					0	0	1	0	0	
ANK1	286	broad.mit.edu	37	8	41572500	41572500	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:41572500G>A	uc003xok.2	-	15	1779	c.1695C>T	c.(1693-1695)GCC>GCT	p.A565A	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Silent_p.A565A|ANK1_uc003xoj.2_Silent_p.A565A|ANK1_uc003xol.2_Silent_p.A565A|ANK1_uc003xom.2_Silent_p.A598A	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	565	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCACTTTTCCGGCAGCATTCG	0.587													19	78					0	0	1	0	0	
ANK1	286	broad.mit.edu	37	8	41573238	41573238	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:41573238G>A	uc003xok.2	-	14	1618	c.1534C>T	c.(1534-1536)CGT>TGT	p.R512C	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.R512C|ANK1_uc003xoj.2_Missense_Mutation_p.R512C|ANK1_uc003xol.2_Missense_Mutation_p.R512C|ANK1_uc003xom.2_Missense_Mutation_p.R545C	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	512	ANK 15.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGGCCCTCACGGGCTGCAATG	0.607													18	75					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41834766	41834766	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:41834766C>A	uc010lxb.2	-	8	1667	c.1123G>T	c.(1123-1125)GCA>TCA	p.A375S	MYST3_uc010lxc.2_Missense_Mutation_p.A375S|MYST3_uc003xon.3_Missense_Mutation_p.A375S|MYST3_uc010lxd.2_Missense_Mutation_p.A375S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	375	Poly-Ser.|Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GATGATGATGCTGATTGGCTG	0.428													5	145					0.014758	0.0149413	1	1	0	
IKBKB	3551	broad.mit.edu	37	8	42173805	42173805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:42173805C>T	uc003xow.1	+	10	1055	c.878C>T	c.(877-879)ACG>ATG	p.T293M	IKBKB_uc003xov.2_Missense_Mutation_p.T293M|IKBKB_uc010lxh.1_Missense_Mutation_p.T188M|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Missense_Mutation_p.T70M|IKBKB_uc003xox.1_Missense_Mutation_p.T14M|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.T291M|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Missense_Mutation_p.T234M	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	293	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	ACGGATCCCACGTATGGGCCC	0.572													11	49					0	0	1	0	0	
PRKDC	5591	broad.mit.edu	37	8	48746928	48746928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:48746928C>T	uc003xqi.2	-	60	8038	c.7981G>A	c.(7981-7983)GGG>AGG	p.G2661R	PRKDC_uc003xqj.2_Missense_Mutation_p.G2661R|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2661	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GTGCTGCTCCCGGTCAGCCAA	0.562								NHEJ					7	126					0	0	1	0	0	
MCM4	4173	broad.mit.edu	37	8	48887453	48887453	+	Missense_Mutation	SNP	C	T	T	rs149597772		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:48887453C>T	uc003xqk.1	+	15	2391	c.2296C>T	c.(2296-2298)CGG>TGG	p.R766W	MCM4_uc003xql.1_Missense_Mutation_p.R766W|MCM4_uc011ldi.1_Missense_Mutation_p.R753W	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	766					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				ACGCCTCCATCGGGAAGCTCT	0.453													9	97					0	0	1	0	0	
NPBWR1	2831	broad.mit.edu	37	8	53852656	53852656	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:53852656G>A	uc011ldu.1	+	1	189	c.189G>A	c.(187-189)CTG>CTA	p.L63L		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	63	Cytoplasmic (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				ACGTGTTGCTGCGGGCGCCCC	0.667													5	38					0	0	1	0	0	
OPRK1	4986	broad.mit.edu	37	8	54141891	54141891	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:54141891A>G	uc003xrh.1	-	3	1484	c.1109T>C	c.(1108-1110)CTG>CCG	p.L370P	OPRK1_uc003xri.1_Missense_Mutation_p.L370P|OPRK1_uc010lyc.1_Missense_Mutation_p.L281P	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	370	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GATGTCCCTCAGGTAAGCAGG	0.478													10	104					0	0	1	0	0	
MOS	4342	broad.mit.edu	37	8	57025820	57025820	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:57025820C>T	uc011leb.1	-	1	722	c.722G>A	c.(721-723)GGC>GAC	p.G241D		NM_005372	NP_005363	P00540	MOS_HUMAN	v-mos Moloney murine sarcoma viral oncogene	241	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)|central_nervous_system(1)	4			Epithelial(17;0.00117)|all cancers(17;0.00879)			GGTGTATGTGCCTCCTAGAGG	0.517													11	69					0	0	1	0	0	
CHD7	55636	broad.mit.edu	37	8	61654351	61654351	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:61654351C>T	uc003xue.2	+	2	837	c.360C>T	c.(358-360)GGC>GGT	p.G120G		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	120					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCAGTGGTGGCGGTCAGATGG	0.607													3	26					0	0	1	0	0	
RRS1	23212	broad.mit.edu	37	8	67342063	67342063	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:67342063G>T	uc003xwa.2	+	1	801	c.697G>T	c.(697-699)GGG>TGG	p.G233W	ADHFE1_uc003xwb.3_5'Flank|ADHFE1_uc003xwd.3_5'Flank|ADHFE1_uc003xwc.3_5'Flank|ADHFE1_uc003xwe.3_5'Flank|ADHFE1_uc003xwf.3_5'Flank|ADHFE1_uc011les.1_5'Flank|ADHFE1_uc011leq.1_5'Flank|ADHFE1_uc011ler.1_5'Flank	NM_015169	NP_055984	Q15050	RRS1_HUMAN	homolog of yeast ribosome biogenesis regulatory	233					mitotic metaphase plate congression|ribosome biogenesis	condensed nuclear chromosome|nucleolus					0		Lung NSC(129;0.197)	Epithelial(68;0.0391)|all cancers(69;0.0898)|BRCA - Breast invasive adenocarcinoma(89;0.111)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			CGCCTCTGTGGGGCGCTTTCA	0.642													3	27					0.00909568	0.00923047	1	1	0	
ARFGEF1	10565	broad.mit.edu	37	8	68140265	68140265	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:68140265T>C	uc003xxo.1	-	25	3914	c.3524A>G	c.(3523-3525)TAC>TGC	p.Y1175C	ARFGEF1_uc003xxl.1_Missense_Mutation_p.Y629C|ARFGEF1_uc003xxn.1_Missense_Mutation_p.Y158C	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	1175					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TCCCATGTTGTAATATGATAT	0.333													9	66					0	0	1	0	0	
PREX2	80243	broad.mit.edu	37	8	69033268	69033268	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:69033268C>T	uc003xxv.1	+	30	3735	c.3708C>T	c.(3706-3708)ATC>ATT	p.I1236I		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1236					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTCAGAACATCAGGAAATTTG	0.398													16	65					0	0	1	0	0	
TERF1	7013	broad.mit.edu	37	8	73934527	73934527	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:73934527A>C	uc003xzd.2	+	4	639	c.614A>C	c.(613-615)AAT>ACT	p.N205T	TERF1_uc003xze.2_Missense_Mutation_p.N205T	NM_017489	NP_059523	P54274	TERF1_HUMAN	telomeric repeat binding factor 1 isoform 1	205	TRFH dimerization.				age-dependent telomere shortening|cell division|G2/M transition of mitotic cell cycle|induction of apoptosis|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of telomere maintenance via semi-conservative replication|negative regulation of telomere maintenance via telomerase|positive regulation of microtubule polymerization|positive regulation of mitosis|positive regulation of mitotic cell cycle|protein homooligomerization|regulation of transcription, DNA-dependent|telomere maintenance via telomerase|telomere maintenance via telomerase|telomere maintenance via telomere shortening	chromosome, telomeric region|cytoplasm|nuclear telomere cap complex|nucleoplasm|nucleus|spindle	caspase activator activity|DNA bending activity|double-stranded telomeric DNA binding|identical protein binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|telomerase inhibitor activity|telomeric DNA binding			ovary(1)|lung(1)|skin(1)	3	Breast(64;0.218)		Epithelial(68;0.0984)			GGTGATCCAAATTCTCATATG	0.299													12	63					0	0	1	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77764144	77764144	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:77764144A>G	uc003yav.2	+	10	5239	c.4852A>G	c.(4852-4854)ACC>GCC	p.T1618A	ZFHX4_uc003yau.1_Missense_Mutation_p.T1663A|ZFHX4_uc003yaw.1_Missense_Mutation_p.T1618A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1618						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGCAAAGATACCCATTTAGA	0.448										HNSCC(33;0.089)			3	63					0	0	1	0	0	
CNGB3	54714	broad.mit.edu	37	8	87683188	87683188	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:87683188T>G	uc003ydx.2	-	4	523	c.477A>C	c.(475-477)GAA>GAC	p.E159D	CNGB3_uc010maj.2_Missense_Mutation_p.E21D	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	159	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GTGGGCTGGCTTCGGGTGAGG	0.453													19	266					0	0	1	0	0	
CNBD1	168975	broad.mit.edu	37	8	87951895	87951895	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:87951895T>G	uc003ydy.2	+	4	392	c.344T>G	c.(343-345)GTT>GGT	p.V115G		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	115										ovary(3)	3						GCTGTCCATGTTCAGAGAGCA	0.333													4	94					0	0	1	0	0	
RBM12B	389677	broad.mit.edu	37	8	94746270	94746270	+	Missense_Mutation	SNP	G	A	A	rs17853904		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:94746270G>A	uc003yfz.2	-	3	2562	c.2369C>T	c.(2368-2370)CCG>CTG	p.P790L		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	790							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CTCCTGAGGCGGCCGCCTGAA	0.647													13	62					0	0	1	0	0	
RAD54B	25788	broad.mit.edu	37	8	95419749	95419749	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:95419749T>G	uc003ygk.2	-	5	797	c.699A>C	c.(697-699)AAA>AAC	p.K233N	RAD54B_uc010may.1_Missense_Mutation_p.K40N|RAD54B_uc003ygl.1_RNA	NM_012415	NP_036547	O95073	FSBP_HUMAN	RAD54 homolog B	Error:Variant_position_missing_in_O95073_after_alignment					double-strand break repair via homologous recombination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA translocase activity|protein binding			kidney(2)|lung(1)|skin(1)	4	Breast(36;4.5e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00217)			TACAAACACTTTTGAAAGGGT	0.393								Direct_reversal_of_damage|Homologous_recombination					7	95					0	0	1	0	0	
OSR2	116039	broad.mit.edu	37	8	99961546	99961546	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:99961546G>A	uc003yir.2	+	2	901	c.366G>A	c.(364-366)GCG>GCA	p.A122A	OSR2_uc010mbn.2_Silent_p.A122A|OSR2_uc003yiq.2_Silent_p.A122A|OSR2_uc011lgx.1_Silent_p.A243A	NM_001142462	NP_001135934	Q8N2R0	OSR2_HUMAN	odd-skipped related 2 isoform a	122					bone morphogenesis|chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|eyelid development in camera-type eye|head development|mesonephros development|metanephros development|middle ear morphogenesis|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|osteoblast proliferation|palate development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|zinc ion binding			central_nervous_system(1)	1	Breast(36;4.14e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.0136)			CCAATTTGGCGGTGGCTGCCA	0.607													6	139					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100115270	100115270	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:100115270G>A	uc003yiv.2	+	5	613	c.502G>A	c.(502-504)GTC>ATC	p.V168I	VPS13B_uc003yiw.2_Missense_Mutation_p.V168I|VPS13B_uc003yit.2_Missense_Mutation_p.V168I|VPS13B_uc003yiu.1_Missense_Mutation_p.V168I|VPS13B_uc003yis.2_Missense_Mutation_p.V168I|VPS13B_uc011lgy.1_Missense_Mutation_p.V44I	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	168					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGATGATATCGTCCTTTCCGT	0.328													37	126					0	0	1	0	0	
VPS13B	157680	broad.mit.edu	37	8	100523354	100523354	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:100523354G>A	uc003yiv.2	+	29	4433	c.4322G>A	c.(4321-4323)GGC>GAC	p.G1441D	VPS13B_uc003yiw.2_Missense_Mutation_p.G1416D|VPS13B_uc003yix.1_Missense_Mutation_p.G911D	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1441					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTTCTAGATGGCACTCATCAG	0.338													7	90					0	0	1	0	0	
OXR1	55074	broad.mit.edu	37	8	107719362	107719362	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:107719362G>A	uc011lht.1	+	8	1715	c.1616G>A	c.(1615-1617)GGA>GAA	p.G539E	OXR1_uc003ymf.2_Missense_Mutation_p.G538E|OXR1_uc011lhu.1_Missense_Mutation_p.G531E|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Missense_Mutation_p.G236E|OXR1_uc003ymg.1_Missense_Mutation_p.G471E|OXR1_uc003ymi.1_Missense_Mutation_p.G450E	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	539					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TCTGCTGATGGACACATAGAA	0.368													7	40					0	0	1	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110474074	110474074	+	Silent	SNP	C	T	T	rs149284269	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:110474074C>T	uc003yne.2	+	48	7424	c.7320C>T	c.(7318-7320)TGC>TGT	p.C2440C		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2440	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity	p.C2442C(1)		ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGGAGGCTGCGTTATGTTTC	0.403										HNSCC(38;0.096)			5	24					0	0	1	0	0	
HAS2	3037	broad.mit.edu	37	8	122627114	122627114	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:122627114A>C	uc003yph.2	-	4	1432	c.894T>G	c.(892-894)GAT>GAG	p.D298E		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	298	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			GATTGTACCAATCTTCCACAA	0.448													20	206					0	0	1	0	0	
ZHX2	22882	broad.mit.edu	37	8	123965292	123965292	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:123965292G>A	uc003ypk.1	+	3	2109	c.1542G>A	c.(1540-1542)GCG>GCA	p.A514A		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	514						cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			TGGCCATCGCGGCCTCCCGAC	0.537													4	88					0	0	1	0	0	
ANXA13	312	broad.mit.edu	37	8	124696861	124696861	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:124696861T>C	uc003yqu.2	-	10	893	c.820A>G	c.(820-822)ACC>GCC	p.T274A	ANXA13_uc003yqt.2_Missense_Mutation_p.T315A	NM_004306	NP_004297	P27216	ANX13_HUMAN	annexin A13 isoform a	274	Annexin 4.				cell differentiation	plasma membrane	calcium ion binding|calcium-dependent phospholipid binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(37;2.06e-11)|Ovarian(258;0.00579)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00288)			TCGGCCCTGGTCACGACTATG	0.502													3	104					0	0	1	0	0	
ASAP1	50807	broad.mit.edu	37	8	131124486	131124486	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:131124486G>A	uc003yta.1	-	23	2283	c.2255C>T	c.(2254-2256)GCA>GTA	p.A752V	ASAP1_uc003ysz.1_Missense_Mutation_p.A563V|ASAP1_uc011liw.1_Missense_Mutation_p.A745V	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	752					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TCCTGGCAGTGCCAGCTTGTC	0.552													10	81					0	0	1	0	0	
KCNQ3	3786	broad.mit.edu	37	8	133150155	133150155	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:133150155G>A	uc003ytj.2	-	12	1902	c.1677C>T	c.(1675-1677)TCC>TCT	p.S559S	KCNQ3_uc010mdt.2_Silent_p.S559S	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	559					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ACTTTATCCTGGAAAGCATGT	0.458													21	95					0	0	1	0	0	
KCNQ3	3786	broad.mit.edu	37	8	133192508	133192508	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:133192508A>G	uc003ytj.2	-	4	898	c.673T>C	c.(673-675)TCC>CCC	p.S225P	KCNQ3_uc010mdt.2_Missense_Mutation_p.S225P	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	225					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CTTCGCAGGGAGGTGGCCAGA	0.597													12	104					0	0	1	0	0	
PHF20L1	51105	broad.mit.edu	37	8	133836255	133836255	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:133836255C>T	uc003ytt.2	+	13	1911	c.1586C>T	c.(1585-1587)TCG>TTG	p.S529L	PHF20L1_uc003yts.2_Missense_Mutation_p.S529L|PHF20L1_uc011lja.1_Missense_Mutation_p.S503L|PHF20L1_uc003ytu.1_RNA	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	529							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			ACAGGAATATCGAAAACAGAA	0.303													3	63					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133883659	133883659	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:133883659C>G	uc003ytw.2	+	4	382	c.341C>G	c.(340-342)ACC>AGC	p.T114S		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	114	Thyroglobulin type-1 2.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGCACAGACACCTCCTACCTC	0.517													8	142					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133953742	133953742	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:133953742C>T	uc003ytw.2	+	26	5229	c.5188C>T	c.(5188-5190)CGT>TGT	p.R1730C	TG_uc010mdw.2_Missense_Mutation_p.R489C|TG_uc011ljb.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1730	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGCATGCGACCGTGATCTGTG	0.517													24	77					0	0	1	0	0	
SLA	6503	broad.mit.edu	37	8	134050798	134050798	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:134050798A>C	uc003ytz.2	-	9	1634	c.802T>G	c.(802-804)TTC>GTC	p.F268V	TG_uc003ytw.2_Intron|TG_uc010mdw.2_Intron|TG_uc011ljb.1_Intron|TG_uc011ljc.1_Intron|SLA_uc011lje.1_Missense_Mutation_p.F285V|SLA_uc011ljf.1_Missense_Mutation_p.F160V|SLA_uc011ljg.1_Missense_Mutation_p.F241V|SLA_uc011ljd.1_Missense_Mutation_p.F308V	NM_001045556	NP_001039021	Q13239	SLAP1_HUMAN	Src-like-adaptor isoform a	268	SLA C-terminal.					endosome	SH3/SH2 adaptor activity			lung(1)|liver(1)	2	all_epithelial(106;3.51e-21)|Lung NSC(106;4.24e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0279)|Breast(495;0.037)	BRCA - Breast invasive adenocarcinoma(115;0.000701)			GGTGATGAGAAGAATGAGCTC	0.463													17	159					0	0	1	0	0	
ZFAT	57623	broad.mit.edu	37	8	135614834	135614834	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:135614834C>T	uc003yup.2	-	6	1303	c.1128G>A	c.(1126-1128)GCG>GCA	p.A376A	ZFAT_uc003yun.2_Silent_p.A364A|ZFAT_uc003yuo.2_Silent_p.A364A|ZFAT_uc010meh.2_Silent_p.A364A|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.A364A|ZFAT_uc010mej.2_Silent_p.A314A|ZFAT_uc003yur.2_Silent_p.A364A	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	376	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GTGGGTCATGCGCGTCTCGGA	0.552													19	82					0	0	1	0	0	
COL22A1	169044	broad.mit.edu	37	8	139833603	139833603	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:139833603C>T	uc003yvd.2	-	7	1468	c.1021G>A	c.(1021-1023)GGT>AGT	p.G341S		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	341	TSP N-terminal.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TTCATGGCACCCACAGCGTTG	0.577										HNSCC(7;0.00092)			15	149					0	0	1	0	0	
TSNARE1	203062	broad.mit.edu	37	8	143381988	143381988	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:143381988A>G	uc003ywk.2	-	10	1267	c.1149T>C	c.(1147-1149)TTT>TTC	p.F383F	TSNARE1_uc011lju.1_Silent_p.F382F|TSNARE1_uc003ywj.2_Silent_p.F384F|TSNARE1_uc003ywl.3_Silent_p.F164F	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	383					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCAGCTCGGCAAACGGGGCCT	0.562													5	111					0	0	1	0	0	
TSNARE1	203062	broad.mit.edu	37	8	143425535	143425535	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:143425535G>A	uc003ywk.2	-	4	655	c.537C>T	c.(535-537)CGC>CGT	p.R179R	TSNARE1_uc011lju.1_Silent_p.R179R|TSNARE1_uc003ywj.2_Silent_p.R179R|TSNARE1_uc003ywl.3_Intron	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	179					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCACAACGTCGCGGCGACAGT	0.687													21	70					0	0	1	0	0	
ARC	23237	broad.mit.edu	37	8	143694607	143694607	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:143694607G>T	uc003ywn.1	-	1	1227	c.1026C>A	c.(1024-1026)CCC>CCA	p.P342P		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	342					endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				CCAGGGTCTTGGGCAGGGGGT	0.677													8	44					3.09899e-07	3.28105e-07	1	1	0	
EPPK1	83481	broad.mit.edu	37	8	144940356	144940356	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:144940356G>A	uc003zaa.1	-	2	15089	c.15076C>T	c.(15076-15078)CGC>TGC	p.R5026C		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5026	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ACGGGCACGCGGTGGCTGTGC	0.697													12	350					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144991545	144991545	+	Silent	SNP	C	A	A	rs143548638	by1000genomes	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:144991545C>A	uc003zaf.1	-	32	13025	c.12855G>T	c.(12853-12855)ACG>ACT	p.T4285T	PLEC_uc003zab.1_Silent_p.T4148T|PLEC_uc003zac.1_Silent_p.T4152T|PLEC_uc003zad.2_Silent_p.T4148T|PLEC_uc003zae.1_Silent_p.T4116T|PLEC_uc003zag.1_Silent_p.T4126T|PLEC_uc003zah.2_Silent_p.T4134T|PLEC_uc003zaj.2_Silent_p.T4175T	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4285	Binding to intermediate filaments (By similarity).|Globular 2.|Plectin 27.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TCTCCTTGCCCGTCTCGGGGT	0.622													17	88					7.45023e-12	8.06754e-12	1	1	0	
PLEC	5339	broad.mit.edu	37	8	144993391	144993391	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:144993391T>C	uc003zaf.1	-	32	11179	c.11009A>G	c.(11008-11010)GAC>GGC	p.D3670G	PLEC_uc003zab.1_Missense_Mutation_p.D3533G|PLEC_uc003zac.1_Missense_Mutation_p.D3537G|PLEC_uc003zad.2_Missense_Mutation_p.D3533G|PLEC_uc003zae.1_Missense_Mutation_p.D3501G|PLEC_uc003zag.1_Missense_Mutation_p.D3511G|PLEC_uc003zah.2_Missense_Mutation_p.D3519G|PLEC_uc003zaj.2_Missense_Mutation_p.D3560G	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3670	Globular 2.|Plectin 16.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CGTCTCGGGGTCCTCCACGCA	0.637													20	172					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144995498	144995498	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:144995498G>A	uc003zaf.1	-	32	9072	c.8902C>T	c.(8902-8904)CGG>TGG	p.R2968W	PLEC_uc003zab.1_Missense_Mutation_p.R2831W|PLEC_uc003zac.1_Missense_Mutation_p.R2835W|PLEC_uc003zad.2_Missense_Mutation_p.R2831W|PLEC_uc003zae.1_Missense_Mutation_p.R2799W|PLEC_uc003zag.1_Missense_Mutation_p.R2809W|PLEC_uc003zah.2_Missense_Mutation_p.R2817W|PLEC_uc003zaj.2_Missense_Mutation_p.R2858W	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2968	Plectin 4.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TAGCCGCGCCGGTAGGCCACG	0.682													26	108					0	0	1	0	0	
PLEC	5339	broad.mit.edu	37	8	144995508	144995508	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:144995508G>A	uc003zaf.1	-	32	9062	c.8892C>T	c.(8890-8892)GAC>GAT	p.D2964D	PLEC_uc003zab.1_Silent_p.D2827D|PLEC_uc003zac.1_Silent_p.D2831D|PLEC_uc003zad.2_Silent_p.D2827D|PLEC_uc003zae.1_Silent_p.D2795D|PLEC_uc003zag.1_Silent_p.D2805D|PLEC_uc003zah.2_Silent_p.D2813D|PLEC_uc003zaj.2_Silent_p.D2854D	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2964	Plectin 4.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GGTAGGCCACGTCCACGGGCA	0.687													12	114					0	0	1	0	0	
OPLAH	26873	broad.mit.edu	37	8	145108223	145108223	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:145108223C>T	uc003zar.3	-	20	2842	c.2760G>A	c.(2758-2760)CTG>CTA	p.L920L	OPLAH_uc003zas.1_Missense_Mutation_p.V195I	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	920							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	GGAGGTCCGACAGGTTGTCGT	0.652													19	51					0	0	1	0	0	
CPSF1	29894	broad.mit.edu	37	8	145626419	145626419	+	Silent	SNP	G	A	A	rs150293361		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr8:145626419G>A	uc003zcj.2	-	6	513	c.438C>T	c.(436-438)GAC>GAT	p.D146D	CPSF1_uc003zck.1_Silent_p.D68D|CPSF1_uc011lle.1_Silent_p.D146D|MIR1234_hsa-mir-1234|MI0006324_5'Flank|CPSF1_uc011llf.1_Silent_p.D146D	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	146					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CACAGCGCCCGTCGGGGTCCA	0.692													13	21					0	0	1	0	0	
FOXD4	2298	broad.mit.edu	37	9	116842	116842	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:116842C>T	uc003zfz.2	-	1	1576	c.1278G>A	c.(1276-1278)TCG>TCA	p.S426S		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	426					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		TGGGCGTGGGCGATACTAAAA	0.677													3	33					0	0	1	0	0	
CBWD1	55871	broad.mit.edu	37	9	164038	164038	+	Splice_Site	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:164038C>G	uc003zga.3	-	5	537	c.431_splice	c.e5-1	p.G144_splice	CBWD1_uc010mgs.2_Splice_Site|CBWD1_uc003zgb.3_Splice_Site_p.G108_splice|CBWD1_uc003zgc.3_Splice_Site_p.G144_splice|CBWD1_uc011llr.1_Splice_Site_p.G108_splice	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1								ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCACTGCACCTGAAAATATA	0.269													11	181					0	0	1	0	0	
DMRT2	10655	broad.mit.edu	37	9	1056535	1056535	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:1056535T>C	uc003zha.2	+	4	1148	c.948T>C	c.(946-948)TCT>TCC	p.S316S	DMRT2_uc003zgx.3_Silent_p.S83S|DMRT2_uc010mgz.2_Silent_p.S83S|DMRT2_uc003zgy.3_Silent_p.S160S|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Silent_p.S316S	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	316					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		ATTCAGGGTCTGGGAATATGG	0.463													20	76					0	0	1	0	0	
SMARCA2	6595	broad.mit.edu	37	9	2186173	2186173	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:2186173G>T	uc003zhc.2	+	32	4638	c.4539G>T	c.(4537-4539)GAG>GAT	p.E1513D	SMARCA2_uc003zhd.2_Missense_Mutation_p.E1495D|SMARCA2_uc010mha.2_Missense_Mutation_p.E1428D|SMARCA2_uc011llw.1_Missense_Mutation_p.E199D|SMARCA2_uc003zhf.2_Missense_Mutation_p.E177D|SMARCA2_uc011llx.1_Missense_Mutation_p.E159D|SMARCA2_uc003zhe.2_Missense_Mutation_p.E201D|SMARCA2_uc003zhg.2_Missense_Mutation_p.E159D|SMARCA2_uc010mhb.2_Missense_Mutation_p.E183D	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1513					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		aagagagtgaggatgaaagca	0.358													7	73					8.12818e-05	8.43872e-05	1	1	0	
RFX3	5991	broad.mit.edu	37	9	3248157	3248157	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:3248157G>A	uc003zhr.2	-	16	2155	c.1843C>T	c.(1843-1845)CGC>TGC	p.R615C	RFX3_uc010mhd.2_Missense_Mutation_p.R615C|RFX3_uc003zhs.1_Missense_Mutation_p.R615C	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	615					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		GCAGCACTGCGTAAGGTTAAG	0.418													3	42					0	0	1	0	0	
GLIS3	169792	broad.mit.edu	37	9	4117861	4117861	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:4117861G>A	uc003zhw.1	-	3	1346	c.1152C>T	c.(1150-1152)GCC>GCT	p.A384A	GLIS3_uc003zhx.1_Silent_p.A539A|GLIS3_uc003zic.1_Silent_p.A539A|GLIS3_uc003zie.1_Silent_p.A539A|GLIS3_uc010mhh.1_Silent_p.A414A|GLIS3_uc003zid.1_Silent_p.A317A|GLIS3_uc010mhi.1_Silent_p.A346A|GLIS3_uc003zif.1_Silent_p.A317A|GLIS3_uc003zig.1_Silent_p.A383A|GLIS3_uc003zih.1_Silent_p.A317A|GLIS3_uc003zhy.1_Silent_p.A317A|GLIS3_uc003zhz.1_Silent_p.A317A|GLIS3_uc003zib.1_Silent_p.A383A|GLIS3_uc010mhg.1_Silent_p.A317A	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	384	C2H2-type 2; atypical.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GAGGGCAACCGGCCCAGAAGC	0.577													10	121					0	0	1	0	0	
AK3	50808	broad.mit.edu	37	9	4719173	4719173	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:4719173G>A	uc003ziq.1	-	3	546	c.406C>T	c.(406-408)CGA>TGA	p.R136*	AK3_uc003zip.1_RNA|AK3_uc011lma.1_Nonsense_Mutation_p.R96*|AK3_uc003zir.1_Nonsense_Mutation_p.R66*	NM_016282	NP_057366	Q9UIJ7	KAD3_HUMAN	adenylate kinase 3	136					blood coagulation	mitochondrial matrix	ATP binding|GTP binding|nucleoside triphosphate adenylate kinase activity			ovary(2)	2	all_hematologic(13;0.137)	Breast(48;0.238)		GBM - Glioblastoma multiforme(50;0.0302)		TTATAGACTCGGCCACTGGCG	0.473													44	72					0	0	1	0	0	
C9orf123	90871	broad.mit.edu	37	9	7798586	7798586	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:7798586T>C	uc003zki.2	-	2	284	c.240A>G	c.(238-240)CTA>CTG	p.L80L	C9orf123_uc003zkj.2_Missense_Mutation_p.Y109C			Q96GE9	CI123_HUMAN	Homo sapiens cDNA FLJ46908 fis, clone FEBRA2004867.	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane					0		all_cancers(3;0.0539)|Lung NSC(3;3.36e-05)|all_lung(3;0.000156)|all_epithelial(3;0.0356)		GBM - Glioblastoma multiforme(50;0.0561)		AACAACGCGGTAGGCCTTCCC	0.408													10	107					0	0	1	0	0	
FREM1	158326	broad.mit.edu	37	9	14859265	14859265	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:14859265G>T	uc003zlm.2	-	4	1137	c.547C>A	c.(547-549)CCA>ACA	p.P183T	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	183					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCATGGGCTGGCAGCCGAGTT	0.512													6	104					0.217242	0.217624	1	1	0	
CNTLN	54875	broad.mit.edu	37	9	17466781	17466781	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:17466781T>C	uc003zmz.2	+	23	3770	c.3744T>C	c.(3742-3744)TCT>TCC	p.S1248S	CNTLN_uc003zmy.2_Silent_p.S1249S|CNTLN_uc010mio.2_Silent_p.S928S	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1249	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		CAGCAGCATCTAAGCAGCTTC	0.403													7	84					0	0	1	0	0	
FAM154A	158297	broad.mit.edu	37	9	18928992	18928992	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:18928992C>T	uc003zni.1	-	4	761	c.483G>A	c.(481-483)CAG>CAA	p.Q161Q	FAM154A_uc010mip.1_5'UTR	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	161										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		CTGATGCCGGCTGGTATTTGT	0.438													10	82					0	0	1	0	0	
DDX58	23586	broad.mit.edu	37	9	32492458	32492458	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:32492458G>A	uc003zra.2	-	4	660	c.502C>T	c.(502-504)CCC>TCC	p.P168S	DDX58_uc010mjj.2_Intron|DDX58_uc010mjk.1_Missense_Mutation_p.P123S|DDX58_uc011lnr.1_Intron|DDX58_uc010mji.2_Missense_Mutation_p.P97S	NM_014314	NP_055129	O95786	DDX58_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	168	CARD 2.				detection of virus|innate immune response|negative regulation of type I interferon production|positive regulation of defense response to virus by host|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	cytosol	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|protein binding|zinc ion binding			ovary(2)|liver(1)|pancreas(1)	4			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;0.00056)		AAAGTTTTGGGCCAGTTTTCC	0.433													6	75					0	0	1	0	0	
TAF1L	138474	broad.mit.edu	37	9	32632915	32632915	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:32632915C>T	uc003zrg.1	-	1	2753	c.2663G>A	c.(2662-2664)CGT>CAT	p.R888H	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	888					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CGTTGGTAAACGAAAATCAGA	0.483													34	147					0	0	1	0	0	
APTX	54840	broad.mit.edu	37	9	32984853	32984853	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:32984853A>G	uc003zrm.2	-	5	743	c.546T>C	c.(544-546)GTT>GTC	p.V182V	APTX_uc010mjm.2_RNA|APTX_uc003zrj.2_Silent_p.V94V|APTX_uc011lns.1_Silent_p.V3V|APTX_uc003zrl.2_Silent_p.V8V|APTX_uc003zrn.2_Silent_p.V94V|APTX_uc003zro.2_Silent_p.V182V|APTX_uc003zrp.2_Silent_p.V94V|APTX_uc003zrq.2_Silent_p.V94V|APTX_uc003zrr.2_Silent_p.V128V|APTX_uc003zrs.2_Silent_p.V182V|APTX_uc003zrt.2_Silent_p.V94V|APTX_uc003zru.2_Silent_p.V128V|APTX_uc003zrv.2_Silent_p.V196V|APTX_uc003zrw.2_Silent_p.V110V|APTX_uc003zrx.2_Silent_p.V182V|APTX_uc003zry.2_Silent_p.V182V|APTX_uc003zrz.2_Silent_p.V3V|APTX_uc003zsa.1_Silent_p.V128V|APTX_uc003zsb.1_RNA|APTX_uc003zsc.1_RNA	NM_175072	NP_778242	Q7Z2E3	APTX_HUMAN	aprataxin isoform c	196	HIT.				cell death|double-strand break repair|regulation of protein stability|response to hydrogen peroxide|single strand break repair	chromatin|nucleolus|nucleoplasm	chromatin binding|damaged DNA binding|DNA 5'-adenosine monophosphate hydrolase activity|double-stranded DNA binding|double-stranded RNA binding|phosphoglycolate phosphatase activity|phosphoprotein binding|polynucleotide 3'-phosphatase activity|protein N-terminus binding|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0302)	GBM - Glioblastoma multiforme(74;0.105)		CATCTTTGTAAACCTAGCAGA	0.308								Direct_reversal_of_damage|Editing_and_processing_nucleases					8	74					0	0	1	0	0	
CHMP5	51510	broad.mit.edu	37	9	33265075	33265075	+	Translation_Start_Site	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:33265075A>T	uc003zsl.3	+	2	354	c.-1A>T	c.(-3-1)CAAGA>CATGA		SUGT1P1_uc010mjq.1_Intron|BAG1_uc003zsi.2_5'Flank|BAG1_uc003zsj.2_5'Flank|BAG1_uc003zsk.2_5'Flank|CHMP5_uc003zsm.3_Translation_Start_Site|CHMP5_uc011lnv.1_Translation_Start_Site	NM_016410	NP_057494	Q9NZZ3	CHMP5_HUMAN	chromatin modifying protein 5						cellular membrane organization|protein transport	cytosol|endosome membrane	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)			CGGCTGCTCAAGATGAACCGA	0.572													62	216					0	0	1	0	0	
NFX1	4799	broad.mit.edu	37	9	33294870	33294870	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:33294870G>A	uc003zsq.2	+	2	539	c.478G>A	c.(478-480)GGT>AGT	p.G160S	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_Missense_Mutation_p.G160S|NFX1_uc003zso.2_Missense_Mutation_p.G160S|NFX1_uc003zsp.1_Missense_Mutation_p.G160S|NFX1_uc010mjr.1_Missense_Mutation_p.G160S|NFX1_uc003zsr.2_Missense_Mutation_p.G160S	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	160					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		GGAAGTTGTGGGTGCAGATCC	0.483													18	86					0	0	1	0	0	
NOL6	65083	broad.mit.edu	37	9	33466695	33466695	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:33466695C>A	uc003zsz.2	-	16	2064	c.1963G>T	c.(1963-1965)GGT>TGT	p.G655C	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.G652C|NOL6_uc011lob.1_Missense_Mutation_p.G603C|NOL6_uc003ztb.1_Missense_Mutation_p.G655C	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	655					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GCCTCCTCACCTGTGCTGGAG	0.632											OREG0019137	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	66					7.48243e-07	7.91224e-07	1	1	0	
NOL6	65083	broad.mit.edu	37	9	33469527	33469527	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:33469527G>A	uc003zsz.2	-	5	798	c.697C>T	c.(697-699)CTG>TTG	p.L233L	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zta.2_Silent_p.L233L|NOL6_uc010mjv.2_Silent_p.L233L|NOL6_uc011lob.1_Silent_p.L173L|NOL6_uc003ztb.1_Silent_p.L233L	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	233					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		GAGGGTTTCAGGTGGCAGCCA	0.597													8	131					0	0	1	0	0	
PRSS3	5646	broad.mit.edu	37	9	33797977	33797977	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:33797977C>T	uc003ztj.3	+	3	522	c.522C>T	c.(520-522)GCC>GCT	p.A174A	uc003ztk.1_Intron|PRSS3_uc003zti.3_Silent_p.A131A|PRSS3_uc003ztl.3_Silent_p.A117A	NM_007343	NP_031369	P35030	TRY3_HUMAN	mesotrypsin isoform 1 preproprotein	174	Peptidase S1.				digestion|endothelial cell migration|zymogen activation	extracellular space	calcium ion binding|protein binding|serine-type endopeptidase activity|serine-type peptidase activity				0			LUSC - Lung squamous cell carcinoma(29;0.0176)			CCTCACCTGCCGTCATCAATG	0.557													30	126					0	0	1	0	0	
KIF24	347240	broad.mit.edu	37	9	34256530	34256530	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:34256530G>A	uc003zua.3	-	11	3195	c.3075C>T	c.(3073-3075)AAC>AAT	p.N1025N	KIF24_uc010mkb.2_Intron	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	1025					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			CAGCATGACCGTTTTTCACAG	0.552													42	116					0	0	1	0	0	
KIF24	347240	broad.mit.edu	37	9	34286630	34286630	+	Silent	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:34286630C>A	uc003zua.3	-	6	1320	c.1200G>T	c.(1198-1200)GTG>GTT	p.V400V	KIF24_uc010mkb.2_Silent_p.V431V	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	400	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			AGAGGAGCTCCACACTGTCCA	0.438													19	64					2.41591e-17	2.64115e-17	1	1	0	
KIAA1161	57462	broad.mit.edu	37	9	34372050	34372050	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:34372050G>A	uc003zue.3	-	3	1059	c.892C>T	c.(892-894)CGT>TGT	p.R298C		NM_020702	NP_065753	Q6NSJ0	K1161_HUMAN	hypothetical protein LOC57462	298	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|breast(1)|central_nervous_system(1)	3			LUSC - Lung squamous cell carcinoma(29;0.0107)	GBM - Glioblastoma multiforme(74;0.126)		AAGTAGCGACGCACCATGTAC	0.662													11	30					0	0	1	0	0	
UNC13B	10497	broad.mit.edu	37	9	35377503	35377503	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:35377503C>T	uc003zwq.2	+	15	1919	c.1627C>T	c.(1627-1629)CGG>TGG	p.R543W	UNC13B_uc003zwr.2_Missense_Mutation_p.R543W	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	543					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			AGCTGAGGACCGGACCCAGAA	0.517													7	100					0	0	1	0	0	
CA9	768	broad.mit.edu	37	9	35680810	35680810	+	Missense_Mutation	SNP	T	C	C	rs151268469		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:35680810T>C	uc003zxo.3	+	10	1340	c.1298T>C	c.(1297-1299)GTG>GCG	p.V433A	CA9_uc003zxp.3_Missense_Mutation_p.V424A	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	433	Helical; (Potential).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GCGTTCCTTGTGCAGATGAGA	0.532													16	90					0	0	1	0	0	
CREB3	10488	broad.mit.edu	37	9	35736119	35736119	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:35736119C>G	uc003zxv.2	+	7	1139	c.686C>G	c.(685-687)ACC>AGC	p.T229S	CREB3_uc010mla.2_Missense_Mutation_p.T148S	NM_006368	NP_006359	O43889	CREB3_HUMAN	cAMP responsive element binding protein 3	253	Cytoplasmic (Potential).				chemotaxis|induction of positive chemotaxis|interspecies interaction between organisms|negative regulation of cell cycle|positive regulation of calcium ion transport|positive regulation of cell migration|positive regulation of transcription, DNA-dependent|reactivation of latent virus|regulation of cell proliferation	cytosol|endoplasmic reticulum|endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|integral to membrane|nucleus|nucleus	cAMP response element binding protein binding|CCR1 chemokine receptor binding|DNA binding|protein dimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity				0	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)	GBM - Glioblastoma multiforme(74;0.0285)		AGCAGCAGCACCTGCATCTTG	0.502											OREG0019176	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	129					0	0	1	0	0	
NPR2	4882	broad.mit.edu	37	9	35793058	35793058	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:35793058G>A	uc003zyd.2	+	1	653	c.653G>A	c.(652-654)CGG>CAG	p.R218Q	NPR2_uc010mlb.2_Missense_Mutation_p.R218Q	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	218	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CACTTCATCCGGGCCAACGGG	0.632													13	32					0	0	1	0	0	
RECK	8434	broad.mit.edu	37	9	36117105	36117105	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:36117105C>T	uc003zyv.2	+	17	2270	c.2184C>T	c.(2182-2184)CAC>CAT	p.H728H	RECK_uc003zyw.2_Silent_p.H600H|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	728	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			ACACAGACCACATGGAGCACA	0.463													13	57					0	0	1	0	0	
CCIN	881	broad.mit.edu	37	9	36170316	36170316	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:36170316C>T	uc003zzb.3	+	1	928	c.817C>T	c.(817-819)CGG>TGG	p.R273W		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	273					cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			GGTCTACCAGCGGAAAGGGGC	0.572													9	48					0	0	1	0	0	
MELK	9833	broad.mit.edu	37	9	36657353	36657353	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:36657353C>T	uc003zzn.2	+	13	1307	c.1169C>T	c.(1168-1170)ACA>ATA	p.T390I	MELK_uc011lpm.1_Missense_Mutation_p.T259I|MELK_uc011lpn.1_Intron|MELK_uc011lpo.1_Missense_Mutation_p.T196I|MELK_uc010mll.2_Missense_Mutation_p.T358I|MELK_uc011lpp.1_Missense_Mutation_p.T342I|MELK_uc010mlm.2_Missense_Mutation_p.T319I|MELK_uc011lpq.1_Missense_Mutation_p.T196I|MELK_uc011lpr.1_Missense_Mutation_p.T319I|MELK_uc011lps.1_Missense_Mutation_p.T310I	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	390						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			ACTCCCCGAACATCACAGGTT	0.373													5	77					0	0	1	0	0	
FAM75A5	727905	broad.mit.edu	37	9	65506420	65506420	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:65506420T>C	uc004adx.3	-	4	1169	c.1140A>G	c.(1138-1140)AAA>AAG	p.K380K		NM_015667	NP_056482	Q5VU36	F75A5_HUMAN	hypothetical protein LOC26165	380						integral to membrane					0						TCCAGAAGGGTTTTGGGTTTG	0.448													3	110					0	0	1	0	0	
PGM5	5239	broad.mit.edu	37	9	70993145	70993145	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:70993145A>G	uc004agr.2	+	2	521	c.292A>G	c.(292-294)ATC>GTC	p.I98V		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	98					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						ACAGAATGGCATCTTGTCGAC	0.478													17	75					0	0	1	0	0	
APBA1	320	broad.mit.edu	37	9	72131597	72131597	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:72131597C>T	uc004ahh.2	-	2	806	c.530G>A	c.(529-531)CGC>CAC	p.R177H		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	177					axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GTCCTCACCGCGGTGGAAGAG	0.667													4	15					0	0	1	0	0	
C9orf85	138241	broad.mit.edu	37	9	74526630	74526630	+	Translation_Start_Site	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:74526630G>T	uc004ain.2	+	1	208	c.-20G>T	c.(-22--18)GAGGG>GATGG		C9orf85_uc004aio.2_RNA|C9orf85_uc010mou.2_RNA|C9orf85_uc010mov.2_RNA|FAM108B1_uc004ail.2_5'Flank|FAM108B1_uc004aim.1_5'Flank	NM_182505	NP_872311	Q96MD7	CI085_HUMAN	hypothetical protein LOC138241												0						CTCCCGGCGAGGGGTGGCTTT	0.507													12	210					3.27435e-08	3.4883e-08	1	1	0	
Unknown	0	broad.mit.edu	37	9	74622859	74622859	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:74622859C>T	uc011lsc.1	-	1		c.194G>A				NR_024392				Homo sapiens heat shock 27kDa protein-like 2 pseudogene (HSPBL2), non-coding RNA.																		GCCCGCGACTCGAAGGTGACT	0.652													5	20					0	0	1	0	0	
FOXB2	442425	broad.mit.edu	37	9	79635083	79635083	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:79635083G>A	uc004ako.1	+	1	513	c.513G>A	c.(511-513)CCG>CCA	p.P171P		NM_001013735	NP_001013757	Q5VYV0	FOXB2_HUMAN	forkhead box B2	171	Poly-Pro.				brain development|embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						cgccgcccccgccgccgccgc	0.318													3	13					0	0	1	0	0	
TLE4	7091	broad.mit.edu	37	9	82333808	82333808	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:82333808G>A	uc004ald.2	+	16	2436	c.1587G>A	c.(1585-1587)ACG>ACA	p.T529T	TLE4_uc004alc.2_Silent_p.T504T|TLE4_uc010mpr.2_Silent_p.T383T|TLE4_uc004ale.2_Silent_p.T141T|TLE4_uc011lsq.1_Silent_p.T472T|TLE4_uc010mps.2_Silent_p.T428T|TLE4_uc004alf.2_Silent_p.T443T	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						ACGTGTACACGGGTGGGAAGG	0.597													36	120					0	0	1	0	0	
TLE1	7088	broad.mit.edu	37	9	84226773	84226773	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:84226773C>T	uc004aly.2	-	13	1606	c.1165G>A	c.(1165-1167)GCT>ACT	p.A389T	TLE1_uc004alz.2_Missense_Mutation_p.A399T|TLE1_uc011lsr.1_Missense_Mutation_p.A374T|TLE1_uc004ama.1_Missense_Mutation_p.A388T|TLE1_uc011lss.1_Missense_Mutation_p.A315T	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	389	Pro/Ser-rich.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						GCGTAGGCAGCGCCTGGGCTG	0.687													10	48					0	0	1	0	0	
FLJ46321	389763	broad.mit.edu	37	9	84603827	84603827	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:84603827T>G	uc004amn.2	+	1	141	c.94T>G	c.(94-96)TTG>GTG	p.L32V		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	32	Helical; (Potential).					integral to membrane					0						CTTCATCTGCTTGAGTGGGTT	0.443													4	98					0	0	1	0	0	
SLC28A3	64078	broad.mit.edu	37	9	86900448	86900448	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:86900448A>C	uc010mpz.2	-	14	1584	c.1459T>G	c.(1459-1461)TCC>GCC	p.S487A	SLC28A3_uc011lsy.1_Missense_Mutation_p.S418A|SLC28A3_uc004anu.1_Missense_Mutation_p.S487A	NM_022127	NP_071410	Q9HAS3	S28A3_HUMAN	concentrative Na+-nucleoside cotransporter	487	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|plasma membrane	nucleoside binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4						AAGATGTAGGAGCAGATTAGC	0.423													6	102					0	0	1	0	0	
DAPK1	1612	broad.mit.edu	37	9	90220046	90220046	+	Silent	SNP	C	T	T	rs36207429		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:90220046C>T	uc004apc.2	+	3	378	c.240C>T	c.(238-240)CAC>CAT	p.H80H	DAPK1_uc004ape.2_Silent_p.H80H|DAPK1_uc004apd.2_Silent_p.H80H|DAPK1_uc011ltg.1_Silent_p.H80H|DAPK1_uc011lth.1_Translation_Start_Site	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	80	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						TCACCCTGCACGAGGTCTATG	0.622									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				9	128					0	0	1	0	0	
FAM75C1	441452	broad.mit.edu	37	9	90537425	90537425	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:90537425G>C	uc010mqi.2	+	4	2632	c.2603G>C	c.(2602-2604)GGA>GCA	p.G868A	FAM75C1_uc004apq.3_Missense_Mutation_p.G851A	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						TTTGAGCCTGGAATGGCCACG	0.527													34	137					0	0	1	0	0	
FAM75C1	441452	broad.mit.edu	37	9	90538029	90538029	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:90538029G>A	uc010mqi.2	+	4	3236	c.3207G>A	c.(3205-3207)CCG>CCA	p.P1069P	FAM75C1_uc004apq.3_Silent_p.P1052P	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						GACAGATACCGGAGGAGAACA	0.512													92	117					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	9	90744755	90744755	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:90744755T>C	uc011lti.1	-	4	3226	c.3197A>G	c.(3196-3198)AAC>AGC	p.N1066S	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		AAGTGACATGTTCTCCTCCAG	0.517													18	186					0	0	1	0	0	
ANKRD19	138649	broad.mit.edu	37	9	95599890	95599890	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:95599890C>T	uc004ass.2	+	9		c.1974C>T			ANKRD19_uc004asr.3_RNA	NR_026868				Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						CTCCTTTCTGCGTCGTCATAT	0.552													9	38					0	0	1	0	0	
C9orf102	375748	broad.mit.edu	37	9	98684626	98684626	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:98684626A>G	uc004avt.3	+	8	1760	c.1372A>G	c.(1372-1374)AGT>GGT	p.S458G	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Missense_Mutation_p.S160G|C9orf102_uc010mry.1_Missense_Mutation_p.S160G|C9orf102_uc010mrz.2_Missense_Mutation_p.S269G|C9orf102_uc004avu.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	458					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				CTTGTATCTCAGTTACCTTAC	0.393													7	53					0	0	1	0	0	
FAM22G	441457	broad.mit.edu	37	9	99694495	99694495	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:99694495G>A	uc004awq.1	+	2	1223	c.508G>A	c.(508-510)GTG>ATG	p.V170M		NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	170										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				GGCCCCCATCGTGTCCCCAGG	0.697													6	102					0	0	1	0	0	
FAM22G	441457	broad.mit.edu	37	9	99697671	99697671	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:99697671C>T	uc004awq.1	+	3	1490	c.775C>T	c.(775-777)CGG>TGG	p.R259W	HIATL2_uc004awr.1_Intron	NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	259										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				GGGACTGTGGCGGGCCATGCG	0.622													45	98					0	0	1	0	0	
NR4A3	8013	broad.mit.edu	37	9	102590657	102590657	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:102590657G>A	uc004baf.1	+	3	1062	c.333G>A	c.(331-333)CAG>CAA	p.Q111Q	NR4A3_uc004bae.2_Silent_p.Q111Q|NR4A3_uc004bag.1_Silent_p.Q111Q|NR4A3_uc004bai.2_Silent_p.Q122Q	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	111					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				accaGCAGCAGCATCAGCAGC	0.498			T	EWSR1	extraskeletal myxoid chondrosarcoma								6	82					0	0	1	0	0	
OR13C5	138799	broad.mit.edu	37	9	107361654	107361654	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:107361654A>G	uc011lvp.1	-	1	41	c.41T>C	c.(40-42)CTG>CCG	p.L14P		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AAGTCCCTTCAGAAAAAATTC	0.383													17	91					0	0	1	0	0	
ZNF462	58499	broad.mit.edu	37	9	109689883	109689883	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:109689883G>A	uc004bcz.2	+	3	3979	c.3690G>A	c.(3688-3690)ACG>ACA	p.T1230T	ZNF462_uc010mto.2_Silent_p.T1078T|ZNF462_uc004bda.2_Silent_p.T1078T	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1230					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GGCAGCATACGGCCACCATTC	0.532													27	284					0	0	1	0	0	
ZNF462	58499	broad.mit.edu	37	9	109691126	109691126	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:109691126T>C	uc004bcz.2	+	3	5222	c.4933T>C	c.(4933-4935)TCC>CCC	p.S1645P	ZNF462_uc010mto.2_Missense_Mutation_p.S1493P|ZNF462_uc004bda.2_Missense_Mutation_p.S1493P	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1645					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GGAGCCCGTGTCCACTTCTCA	0.617													7	111					0	0	1	0	0	
EPB41L4B	54566	broad.mit.edu	37	9	112018740	112018740	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:112018740G>A	uc004bdz.1	-	8	1068	c.773C>T	c.(772-774)GCG>GTG	p.A258V	EPB41L4B_uc004bea.2_Missense_Mutation_p.A258V	NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	258	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGAGTTCCGCCTGGGCAGG	0.468													35	119					0	0	1	0	0	
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900596	112900596	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:112900596A>G	uc004bei.2	+	9	3660	c.3468A>G	c.(3466-3468)ACA>ACG	p.T1156T	PALM2-AKAP2_uc004bek.3_Silent_p.T924T|PALM2-AKAP2_uc004bej.3_Silent_p.T924T|PALM2-AKAP2_uc004bel.1_Silent_p.T734T|AKAP2_uc011lwi.1_Silent_p.T782T|AKAP2_uc004bem.2_Silent_p.T782T|PALM2-AKAP2_uc010mtw.1_Silent_p.T742T|AKAP2_uc011lwj.1_Silent_p.T693T|PALM2-AKAP2_uc004ben.2_Silent_p.T693T	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	693							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						TGAGAAGCACAGCCTCCCTCC	0.557													4	70					0	0	1	0	0	
HDHD3	81932	broad.mit.edu	37	9	116136221	116136221	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:116136221G>A	uc004bhi.1	-	2	1198	c.414C>T	c.(412-414)GAC>GAT	p.D138D	HDHD3_uc004bhj.2_Silent_p.D138D|HDHD3_uc004bhk.2_Silent_p.D138D	NM_031219	NP_112496	Q9BSH5	HDHD3_HUMAN	haloacid dehalogenase-like hydrolase domain	138							phosphoglycolate phosphatase activity|protein binding				0						CTAGCCGTCGGTCAAAGTTGG	0.652													93	291					0	0	1	0	0	
TLR4	7099	broad.mit.edu	37	9	120475714	120475714	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:120475714A>G	uc004bjz.2	+	3	1599	c.1308A>G	c.(1306-1308)CAA>CAG	p.Q436Q	TLR4_uc004bka.2_Silent_p.Q396Q|TLR4_uc004bkb.2_Silent_p.Q236Q	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	436	LRR 13.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						ATTTGAAACAAATGAGTGAGT	0.373													4	93					0	0	1	0	0	
MEGF9	1955	broad.mit.edu	37	9	123421695	123421695	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:123421695A>G	uc004bkj.1	-	4	871	c.871T>C	c.(871-873)TGT>CGT	p.C291R	MEGF9_uc011lyb.1_Missense_Mutation_p.C246R|MEGF9_uc004bkk.3_Missense_Mutation_p.C246R	NM_001080497	NP_001073966	Q9H1U4	MEGF9_HUMAN	multiple EGF-like-domains 9	254	Laminin EGF-like 2.|Extracellular (Potential).					integral to membrane	calcium ion binding				0						CTACAGTCACATGGCTGACAG	0.473													21	57					0	0	1	0	0	
PHF19	26147	broad.mit.edu	37	9	123636883	123636883	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:123636883A>G	uc004bks.1	-	2	390	c.137T>C	c.(136-138)GTG>GCG	p.V46A	PHF19_uc004bkt.2_Missense_Mutation_p.V46A|PHF19_uc010mvk.2_Missense_Mutation_p.V46A	NM_015651	NP_056466	Q5T6S3	PHF19_HUMAN	PHD finger protein 19 isoform a	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|breast(1)	2						CCGGCACAGCACATACTGGCC	0.557													6	106					0	0	1	0	0	
C5	727	broad.mit.edu	37	9	123787797	123787797	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:123787797T>C	uc004bkv.2	-	9	965	c.935A>G	c.(934-936)TAC>TGC	p.Y312C	C5_uc010mvm.1_Missense_Mutation_p.Y312C|C5_uc010mvn.1_Missense_Mutation_p.Y312C	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	312					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TAAACTGTAGTATGACAGTTC	0.279													9	92					0	0	1	0	0	
OR1Q1	158131	broad.mit.edu	37	9	125377434	125377434	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:125377434C>T	uc011lyy.1	+	1	418	c.418C>T	c.(418-420)CTG>TTG	p.L140L		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GACTAGAATGCTGTGTGTGAA	0.488													9	162					0	0	1	0	0	
RABGAP1	23637	broad.mit.edu	37	9	125746881	125746881	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:125746881G>A	uc011lzh.1	+	3	402	c.268G>A	c.(268-270)GGT>AGT	p.G90S	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc004bnm.1_Missense_Mutation_p.G90S	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	90					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						ACAACTGGATGGTGAAGGAGA	0.498													16	80					0	0	1	0	0	
OLFML2A	169611	broad.mit.edu	37	9	127563865	127563865	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:127563865T>A	uc004bov.2	+	5	955	c.842T>A	c.(841-843)CTG>CAG	p.L281Q	OLFML2A_uc010mwr.1_Missense_Mutation_p.L245Q|OLFML2A_uc004bow.2_Missense_Mutation_p.L67Q	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	281											0						CCCCGCGCCCTGGCCCAGCAG	0.632													3	48					0	0	1	0	0	
PPP6C	5537	broad.mit.edu	37	9	127911974	127911974	+	Missense_Mutation	SNP	G	A	A	rs144776498		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:127911974G>A	uc004bpg.3	-	7	1117	c.896C>T	c.(895-897)ACG>ATG	p.T299M	PPP6C_uc010mwv.2_Missense_Mutation_p.T336M|PPP6C_uc010mww.2_Missense_Mutation_p.T277M|PPP6C_uc011lzr.1_Missense_Mutation_p.T152M	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	299					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						TGGCGTTGTCGTTCTGGGAGG	0.428													19	73					0	0	1	0	0	
FAM125B	89853	broad.mit.edu	37	9	129148907	129148907	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:129148907T>C	uc004bqh.1	+	4	460	c.379T>C	c.(379-381)TTC>CTC	p.F127L	FAM125B_uc004bqg.1_Missense_Mutation_p.F127L|FAM125B_uc011lzy.1_Missense_Mutation_p.F112L|FAM125B_uc010mxd.2_Missense_Mutation_p.F120L|FAM125B_uc011lzz.1_Missense_Mutation_p.F120L	NM_033446	NP_258257	Q9H7P6	F125B_HUMAN	hypothetical protein LOC89853 isoform 1	127	MABP.				protein transport	late endosome membrane					0						GCCTGTGGGCTTCATCCCAAT	0.433													7	55					0	0	1	0	0	
SLC2A8	29988	broad.mit.edu	37	9	130166038	130166038	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:130166038G>A	uc004bqu.2	+	6	868	c.823G>A	c.(823-825)GTC>ATC	p.V275I	SLC2A8_uc010mxj.2_Missense_Mutation_p.V275I|SLC2A8_uc004bqv.2_5'Flank	NM_014580	NP_055395	Q9NY64	GTR8_HUMAN	solute carrier family 2 (facilitated glucose	275	Helical; Name=7; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	D-glucose transmembrane transporter activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2						GGTCAACGCCGTCATGTTCTA	0.597													15	51					0	0	1	0	0	
PIP5KL1	138429	broad.mit.edu	37	9	130688241	130688241	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:130688241C>T	uc011mao.1	-	8	713	c.668G>A	c.(667-669)TGC>TAC	p.C223Y	PIP5KL1_uc004bsu.2_Missense_Mutation_p.C20Y	NM_001135219	NP_001128691	Q5T9C9	PI5L1_HUMAN	phosphatidylinositol-4-phosphate 5-kinase-like 1	223	PIPK.					cytoplasm|membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			lung(1)|kidney(1)	2						GCTCACCTCGCAGCCTTTGAT	0.537													8	49					0	0	1	0	0	
LCN2	3934	broad.mit.edu	37	9	130911883	130911883	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:130911883C>A	uc004bto.1	+	1	152	c.79C>A	c.(79-81)CTG>ATG	p.L27M	LCN2_uc010mxq.1_Missense_Mutation_p.L27M|LCN2_uc011map.1_Missense_Mutation_p.L27M	NM_005564	NP_005555	P80188	NGAL_HUMAN	lipocalin 2 precursor	27					apoptosis|innate immune response|regulation of apoptosis|siderophore transport		iron ion binding|transporter activity				0						CACCTCAGACCTGATCCCAGC	0.642													6	85					3.59834e-05	3.74717e-05	1	1	0	
CERCAM	51148	broad.mit.edu	37	9	131191243	131191243	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:131191243G>A	uc004buz.3	+	8	1396	c.998G>A	c.(997-999)CGT>CAT	p.R333H	CERCAM_uc004buy.1_Missense_Mutation_p.R255H|CERCAM_uc010mxz.2_Missense_Mutation_p.R255H|CERCAM_uc010mya.1_Missense_Mutation_p.R174H	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	333					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						AGGCCTGACCGTCGGGAACGC	0.672													7	22					0	0	1	0	0	
METTL11A	28989	broad.mit.edu	37	9	132396585	132396585	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:132396585G>T	uc004byd.1	+	3	609	c.415G>T	c.(415-417)GGC>TGC	p.G139C	METTL11A_uc010myw.1_Intron|METTL11A_uc011mbs.1_Intron	NM_014064	NP_054783	Q9BV86	NTM1A_HUMAN	methyltransferase like 11A	139					chromosome segregation|N-terminal peptidyl-proline dimethylation|N-terminal peptidyl-serine dimethylation|N-terminal peptidyl-serine trimethylation|spindle organization	nucleus	protein binding|protein methyltransferase activity				0						GTGGGTGATAGGTGAGGGTTC	0.592													7	115					2.74318e-10	2.94995e-10	1	1	0	
FNBP1	23048	broad.mit.edu	37	9	132741597	132741597	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:132741597T>G	uc004byw.1	-	3	416	c.197A>C	c.(196-198)AAG>ACG	p.K66T	FNBP1_uc011mbv.1_Missense_Mutation_p.K66T|FNBP1_uc011mbw.1_Missense_Mutation_p.K66T|FNBP1_uc004bza.2_Missense_Mutation_p.K66T|FNBP1_uc004byz.1_Missense_Mutation_p.K66T|FNBP1_uc004byx.1_5'UTR|FNBP1_uc004byy.1_5'UTR	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	66	Interaction with microtubules (By similarity).|Required for self-association and induction of membrane tubulation.|Self-association, lipid-binding and induction of membrane tubulation.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		GTAAACATACTTGTATTCTTC	0.328			T	MLL	AML								6	68					0	0	1	0	0	
GPR107	57720	broad.mit.edu	37	9	132866711	132866711	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:132866711G>A	uc004bze.2	+	13	1371	c.1144G>A	c.(1144-1146)GTA>ATA	p.V382I	GPR107_uc004bzb.2_Missense_Mutation_p.V193I|GPR107_uc004bzc.3_RNA|GPR107_uc011mbx.1_Missense_Mutation_p.V382I|GPR107_uc004bzd.2_Missense_Mutation_p.V382I	NM_001136557	NP_001130029	Q5VW38	GP107_HUMAN	G protein-coupled receptor 107 isoform 1	382	Helical; Name=4; (Potential).					integral to membrane				upper_aerodigestive_tract(1)	1		Ovarian(14;0.000531)				CCTGGCAAATGTAGCCTACAT	0.522													22	64					0	0	1	0	0	
POMT1	10585	broad.mit.edu	37	9	134397547	134397547	+	Missense_Mutation	SNP	G	A	A	rs119462987		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:134397547G>A	uc004cav.2	+	19	2207	c.2005G>A	c.(2005-2007)GCA>ACA	p.A669T	POMT1_uc004cax.2_Missense_Mutation_p.A647T|POMT1_uc011mcj.1_Missense_Mutation_p.A387T|POMT1_uc004cau.2_Missense_Mutation_p.A647T|POMT1_uc004caw.2_Missense_Mutation_p.A593T|POMT1_uc011mck.1_Missense_Mutation_p.A530T|POMT1_uc011mcl.1_Missense_Mutation_p.A495T|POMT1_uc011mcm.1_Missense_Mutation_p.A617T	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	669	Helical; (Potential).		A -> T (in MDDGB1).		multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		CTACCTGCCCGCACTCACCTT	0.627													33	89					0	0	1	0	0	
C9orf9	11092	broad.mit.edu	37	9	135762810	135762810	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:135762810C>T	uc004cbx.1	+	3	310	c.199C>T	c.(199-201)CTC>TTC	p.L67F	C9orf9_uc004cby.1_Missense_Mutation_p.L67F|C9orf9_uc004cbz.1_Missense_Mutation_p.L67F	NM_018956	NP_061829	Q96E40	CI009_HUMAN	Rsb-66 protein	67								p.?(1)			0				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|GBM - Glioblastoma multiforme(294;4.84e-07)|Epithelial(140;1.28e-06)		GCGGGTTCTGCTCATGTTCCT	0.582													40	133					0	0	1	0	0	
C9orf96	169436	broad.mit.edu	37	9	136265620	136265620	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136265620G>A	uc004cdk.2	+	12	1222	c.1161G>A	c.(1159-1161)CTG>CTA	p.L387L	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	387							ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ATGTCCAGCTGTGTGCCTGCT	0.682													24	78					0	0	1	0	0	
ADAMTS13	11093	broad.mit.edu	37	9	136319618	136319619	+	Missense_Mutation	DNP	CG	TA	TA			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136319618_136319619CG>TA	uc004cdv.3	+	24	3570_3571	c.3126_3127CG>TA	c.(3124-3129)CTCGAC>CTTAAC	p.D1043N	ADAMTS13_uc004cdp.3_Missense_Mutation_p.D270N|ADAMTS13_uc004cdt.1_Missense_Mutation_p.D1043N|ADAMTS13_uc004cdu.1_Missense_Mutation_p.D1012N|ADAMTS13_uc004cdw.3_Missense_Mutation_p.D1043N|ADAMTS13_uc004cdx.3_Missense_Mutation_p.D1012N|ADAMTS13_uc004cdz.3_Missense_Mutation_p.D713N|ADAMTS13_uc004cea.1_5'Flank|ADAMTS13_uc004ceb.3_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1043	TSP type-1 7.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GTGTGCAGCTCGACCAAGGCCA	0.658													20	74					0	0	1	0	0	
DBH	1621	broad.mit.edu	37	9	136501500	136501500	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136501500G>A	uc004cel.2	+	1	16	c.7G>A	c.(7-9)GCC>ACC	p.A3T		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	3	Cytoplasmic (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	AGCCATGCCCGCCCTCAGTCG	0.642													4	75					0	0	1	0	0	
SARDH	1757	broad.mit.edu	37	9	136595252	136595252	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136595252G>A	uc004cep.3	-	5	882	c.748C>T	c.(748-750)CGG>TGG	p.R250W	SARDH_uc004ceo.2_Missense_Mutation_p.R250W|SARDH_uc011mdn.1_Missense_Mutation_p.R250W|SARDH_uc011mdo.1_Missense_Mutation_p.R82W	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	250					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GCGACCCGCCGCACCCCAAAA	0.577													26	106					0	0	1	0	0	
SARDH	1757	broad.mit.edu	37	9	136597651	136597651	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136597651C>T	uc004cep.3	-	3	538	c.404G>A	c.(403-405)CGG>CAG	p.R135Q	SARDH_uc004ceo.2_Missense_Mutation_p.R135Q|SARDH_uc011mdn.1_Missense_Mutation_p.R135Q|SARDH_uc011mdo.1_5'UTR	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	135					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		CTCCAGCTCCCGGCTCACCAC	0.677													10	255					0	0	1	0	0	
SARDH	1757	broad.mit.edu	37	9	136599205	136599205	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136599205C>T	uc004cep.3	-	2	225	c.91G>A	c.(91-93)GCA>ACA	p.A31T	SARDH_uc004ceo.2_Missense_Mutation_p.A31T|SARDH_uc011mdn.1_Missense_Mutation_p.A31T|SARDH_uc011mdo.1_Intron	NM_001134707	NP_001128179	Q9UL12	SARDH_HUMAN	sarcosine dehydrogenase precursor	31					glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|sarcosine dehydrogenase activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.21e-07)|Epithelial(140;2.37e-06)|all cancers(34;2.75e-05)		GGGCCAGCTGCGCTGGACAGG	0.697													3	30					0	0	1	0	0	
VAV2	7410	broad.mit.edu	37	9	136662843	136662843	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:136662843G>A	uc004ces.2	-	10	971	c.925C>T	c.(925-927)CAG>TAG	p.Q309*	VAV2_uc004cer.2_Nonsense_Mutation_p.Q304*	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	309	DH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		TCGACTTTCTGCCTGAAGTCC	0.617													9	29					0	0	1	0	0	
OBP2A	29991	broad.mit.edu	37	9	138438712	138438712	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:138438712T>G	uc004cgb.2	+	2	203	c.161T>G	c.(160-162)GTG>GGG	p.V54G	OBP2A_uc004cgc.2_Missense_Mutation_p.V54G|OBP2A_uc010nau.2_RNA|OBP2A_uc010nav.2_Intron	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor	54					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		CCAGTGAAGGTGACAGCCCTG	0.627													11	45					0	0	1	0	0	
KCNT1	57582	broad.mit.edu	37	9	138656935	138656935	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:138656935G>A	uc011mdq.1	+	12	1168	c.1094G>A	c.(1093-1095)CGC>CAC	p.R365H	KCNT1_uc011mdr.1_Missense_Mutation_p.R192H|KCNT1_uc010nbf.2_Missense_Mutation_p.R320H|KCNT1_uc004cgo.1_Missense_Mutation_p.R114H	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	365						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		AACTACAGCCGCCACCGTGCG	0.617													10	42					0	0	1	0	0	
GPSM1	26086	broad.mit.edu	37	9	139250158	139250158	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139250158C>T	uc004chd.2	+	12	1692	c.1472C>T	c.(1471-1473)CCG>CTG	p.P491L	GPSM1_uc011mdu.1_5'UTR|GPSM1_uc004che.2_5'UTR	NM_001145638	NP_001139110	Q86YR5	GPSM1_HUMAN	G-protein signaling modulator 1 (AGS3-like, C.	491	Mediates association with membranes (By similarity).				cell differentiation|nervous system development|signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|plasma membrane	binding|GTPase activator activity				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.39e-06)|Epithelial(140;3.24e-06)		CCGAGGGCCCCGTCTTCGGAC	0.672													13	85					0	0	1	0	0	
CARD9	64170	broad.mit.edu	37	9	139262099	139262099	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139262099G>A	uc004chg.3	-	8	1425	c.1259C>T	c.(1258-1260)ACG>ATG	p.T420M	CARD9_uc011mdw.1_Missense_Mutation_p.T420M|CARD9_uc011mdx.1_Missense_Mutation_p.T316M	NM_052813	NP_434700	Q9H257	CARD9_HUMAN	caspase recruitment domain protein 9 isoform 1	420					positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			pancreas(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		CAGGACGAGCGTCTCCAGCTG	0.726													5	9					0	0	1	0	0	
PMPCA	23203	broad.mit.edu	37	9	139312525	139312525	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139312525G>A	uc004chl.2	+	8	959	c.954G>A	c.(952-954)ACG>ACA	p.T318T	PMPCA_uc010nbl.2_Silent_p.T218T|PMPCA_uc011mdz.1_Silent_p.T187T|PMPCA_uc004chm.1_Silent_p.T68T|PMPCA_uc004chn.1_5'Flank	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	318					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		CCGAGCTCACGCACATCATGG	0.567													8	235					0	0	1	0	0	
SEC16A	9919	broad.mit.edu	37	9	139370070	139370070	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139370070C>T	uc004chx.2	-	3	2307	c.1998G>A	c.(1996-1998)ATG>ATA	p.M666I	SEC16A_uc004chv.3_Missense_Mutation_p.M293I|SEC16A_uc004chw.2_Missense_Mutation_p.M666I|SEC16A_uc010nbn.2_Missense_Mutation_p.M666I|SEC16A_uc010nbo.1_Missense_Mutation_p.M666I	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	488					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		AGAGGGTCTCCATGTTGTCTG	0.627													3	36					0	0	1	0	0	
NOTCH1	4851	broad.mit.edu	37	9	139393707	139393707	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139393707A>G	uc004chz.2	-	32	5939	c.5939T>C	c.(5938-5940)CTG>CCG	p.L1980P		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1980	ANK 2.|Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTTCCGGATCAGGATCTGGGC	0.657			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			4	56					0	0	1	0	0	
NOTCH1	4851	broad.mit.edu	37	9	139411769	139411769	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139411769G>A	uc004chz.2	-	9	1510	c.1510C>T	c.(1510-1512)CGC>TGC	p.R504C		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	504	Extracellular (Potential).|EGF-like 13; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TCCAGGCAGCGGCCATTGTGC	0.682			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			5	20					0	0	1	0	0	
FAM69B	138311	broad.mit.edu	37	9	139616709	139616709	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139616709A>G	uc004cik.2	+	4	533	c.439A>G	c.(439-441)ACC>GCC	p.T147A	FAM69B_uc004cil.2_Missense_Mutation_p.T60A|SNHG7_uc004cim.2_RNA	NM_152421	NP_689634	Q5VUD6	FA69B_HUMAN	hypothetical protein LOC138311	147	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;1.03e-05)|Epithelial(140;0.00013)		CACCCGGGGCACCTCCATCAA	0.627													3	44					0	0	1	0	0	
C9orf142	286257	broad.mit.edu	37	9	139888236	139888236	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:139888236C>T	uc004cki.2	+	7	620	c.594C>T	c.(592-594)GGC>GGT	p.G198G		NM_183241	NP_899064	Q9BUH6	CI142_HUMAN	hypothetical protein LOC286257	198											0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CAGCTGGTGGCGTGGACTTCG	0.617													13	47					0	0	1	0	0	
ANAPC2	29882	broad.mit.edu	37	9	140069716	140069716	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:140069716C>A	uc004clr.1	-	12	2302	c.2229G>T	c.(2227-2229)CAG>CAT	p.Q743H	ANAPC2_uc004clq.1_Missense_Mutation_p.Q599H	NM_013366	NP_037498	Q9UJX6	ANC2_HUMAN	anaphase-promoting complex subunit 2	743					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|regulation of cyclin-dependent protein kinase activity	anaphase-promoting complex|cytosol|nucleoplasm	ubiquitin protein ligase binding|ubiquitin-protein ligase activity			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.000858)		TCTGGTCGGCCTGGGAGGCCA	0.701													3	38					0.115264	0.116009	1	1	0	
FAM166A	401565	broad.mit.edu	37	9	140139824	140139824	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:140139824G>T	uc004cmi.1	-	3	512	c.457C>A	c.(457-459)CCA>ACA	p.P153T		NM_001001710	NP_001001710	Q6J272	F166A_HUMAN	hypothetical protein LOC401565	153										ovary(1)	1						CCGTATACTGGGTGTCCCAAG	0.647													4	94					0.00198382	0.00202401	1	1	0	
ENTPD8	377841	broad.mit.edu	37	9	140329487	140329487	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:140329487G>A	uc004cmw.2	-	10	1551	c.1367C>T	c.(1366-1368)GCG>GTG	p.A456V	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Missense_Mutation_p.A419V	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	456	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		CTGAGCCGGCGCATCGGCCGG	0.682													8	40					0	0	1	0	0	
SFRS17A	8227	broad.mit.edu	37	X	1719900	1719900	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:1719900G>A	uc004cqa.2	+	5	1697	c.1501G>A	c.(1501-1503)GCC>ACC	p.A501T	SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_Intron	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	501					B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGAGAGCCCGGCCCACCCAGA	0.716													3	11					0	0	1	0	0	
ARSD	414	broad.mit.edu	37	X	2840009	2840009	+	Missense_Mutation	SNP	G	A	A	rs151213601	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:2840009G>A	uc004cqy.2	-	3	327	c.251C>T	c.(250-252)GCG>GTG	p.A84V	ARSD_uc004cqz.1_Intron|ARSD_uc004cra.1_Missense_Mutation_p.A84V|ARSD_uc004crb.3_Missense_Mutation_p.A84V	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	84						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGGGCGGCCGCCAGGTGCTG	0.547													17	37					0	0	1	0	0	
PRKX	5613	broad.mit.edu	37	X	3573188	3573188	+	Splice_Site	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:3573188A>G	uc010nde.2	-	3	966	c.599_splice	c.e3+1	p.R200_splice		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked								ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				CGTTCCTCTTACCTGTCTACC	0.512													12	109					0	0	1	0	0	
VCX3A	51481	broad.mit.edu	37	X	6451812	6451812	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:6451812C>T	uc004crs.2	-	3	842	c.535G>A	c.(535-537)GAG>AAG	p.E179K	VCX3A_uc010ndk.1_Intron	NM_016379	NP_057463	Q9NNX9	VCX3_HUMAN	variable charge, X-linked 3A	179	8 X 10 AA tandem repeats of L-S-Q-E-S- [EQ]-V-E-E-P.|8.|Glu-rich.				brain development	nucleolus					0						TCTTCCATCTCGCTCTCCTGA	0.587													72	204					0	0	1	0	0	
STS	412	broad.mit.edu	37	X	7177678	7177678	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:7177678T>C	uc004cry.3	+	5	931	c.686T>C	c.(685-687)CTT>CCT	p.L229P		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	229	Helical.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	ATCCTGACCCTTTTCTTGGGC	0.512									Ichthyosis				7	67					0	0	1	0	0	
VCX3B	425054	broad.mit.edu	37	X	8434308	8434308	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:8434308G>A	uc010ndo.2	+	4	842	c.535G>A	c.(535-537)GAG>AAG	p.E179K	VCX3B_uc004csd.1_Missense_Mutation_p.E159K	NM_001001888	NP_001001888	Q9H321	VCX3B_HUMAN	variable charge, X-linked 3B	179	8.|11 X 10 AA tandem repeats of L-S-Q-E-S- [EQ]-V-E-E-P.					nucleolus					0						TCAGGAGAGCGAGATGGAAGA	0.567													8	519					0	0	1	0	0	
KAL1	3730	broad.mit.edu	37	X	8522075	8522075	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:8522075T>C	uc004csf.2	-	9	1422	c.1272A>G	c.(1270-1272)CGA>CGG	p.R424R		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	424					axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						GGCGAGTGGGTCGTCGTCTTT	0.413													7	35					0	0	1	0	0	
OFD1	8481	broad.mit.edu	37	X	13785292	13785292	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:13785292A>G	uc004cvp.3	+	20	3005	c.2646A>G	c.(2644-2646)ATA>ATG	p.I882M	OFD1_uc004cvr.3_Missense_Mutation_p.I412M|OFD1_uc011mil.1_Missense_Mutation_p.I449M|OFD1_uc004cvq.3_Missense_Mutation_p.I705M|OFD1_uc010nen.2_Missense_Mutation_p.I881M|OFD1_uc004cvs.3_RNA|OFD1_uc004cvu.3_Missense_Mutation_p.I841M|OFD1_uc004cvv.3_Missense_Mutation_p.I841M	NM_003611	NP_003602	O75665	OFD1_HUMAN	oral-facial-digital syndrome 1	882	Mediates the interaction with SDCCAG8.|Potential.				cilium movement involved in determination of left/right asymmetry|G2/M transition of mitotic cell cycle	centriole|cilium|cytosol|microtubule basal body|nuclear membrane	alpha-tubulin binding|gamma-tubulin binding				0						AAGAAAAAATACGGGAACAGC	0.353													5	69					0	0	1	0	0	
GPM6B	2824	broad.mit.edu	37	X	13803832	13803832	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:13803832C>T	uc004cvz.2	-	2	448	c.157G>A	c.(157-159)GGC>AGC	p.G53S	GPM6B_uc004cvx.2_Missense_Mutation_p.G34S|GPM6B_uc011min.1_5'UTR|GPM6B_uc004cwa.2_Missense_Mutation_p.G34S|GPM6B_uc004cvw.2_Missense_Mutation_p.G93S|GPM6B_uc011mim.1_Missense_Mutation_p.G67S|GPM6B_uc004cvy.2_Missense_Mutation_p.G93S	NM_005278	NP_005269	Q13491	GPM6B_HUMAN	glycoprotein M6B isoform 3	53					cell differentiation|nervous system development	integral to membrane					0						TGCCCACAGCCGCAGAATAAG	0.587													21	42					0	0	1	0	0	
PIGA	5277	broad.mit.edu	37	X	15349630	15349630	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:15349630G>A	uc004cwr.2	-	2	523	c.423C>T	c.(421-423)CAC>CAT	p.H141H	PIGA_uc004cwq.2_Intron|PIGA_uc010nev.2_Intron|PIGA_uc004cws.2_Intron|PIGA_uc011miq.1_Intron|PIGA_uc010new.1_Intron	NM_002641	NP_002632	P37287	PIGA_HUMAN	phosphatidylinositol	141	Cytoplasmic (Potential).				C-terminal protein lipidation|positive regulation of metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity|protein binding				0	Hepatocellular(33;0.183)					TTGTCTTGGCGTGGAAGAGAG	0.468													24	41					0	0	1	0	0	
ACE2	59272	broad.mit.edu	37	X	15596275	15596275	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:15596275C>T	uc004cxa.1	-	9	1402	c.1234G>A	c.(1234-1236)GCA>ACA	p.A412T	ACE2_uc004cxb.2_Missense_Mutation_p.A412T	NM_021804	NP_068576	Q9BYF1	ACE2_HUMAN	angiotensin I converting enzyme 2 precursor	412	Extracellular (Potential).				angiotensin-mediated drinking behavior|proteolysis|receptor biosynthetic process|regulation of cell proliferation|virion attachment, binding of host cell surface receptor	cell surface|extracellular space|integral to membrane|membrane raft|plasma membrane	carboxypeptidase activity|glycoprotein binding|metallopeptidase activity|peptidyl-dipeptidase activity|viral receptor activity|zinc ion binding			ovary(3)	3	Hepatocellular(33;0.183)				Moexipril(DB00691)	GGTGTGGCTGCAGAAAGTGAC	0.408													9	100					0	0	1	0	0	
BEND2	139105	broad.mit.edu	37	X	18221757	18221757	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:18221757T>C	uc004cyj.3	-	5	925	c.771A>G	c.(769-771)GTA>GTG	p.V257V	BEND2_uc010nfb.2_Silent_p.V257V	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	257										ovary(3)|kidney(1)|central_nervous_system(1)	5						CTGCCATAGGTACTGCTGTAG	0.458													11	100					0	0	1	0	0	
RS1	6247	broad.mit.edu	37	X	18660170	18660170	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:18660170A>C	uc004cyo.2	-	6	664	c.629T>G	c.(628-630)ATT>AGT	p.I210S	CDKL5_uc004cym.2_Intron|CDKL5_uc004cyn.2_Intron	NM_000330	NP_000321	O15537	XLRS1_HUMAN	X-linked juvenile retinoschisis protein	210	F5/8 type C.				cell adhesion|multicellular organismal development|response to stimulus|visual perception	extracellular space				ovary(2)	2	Hepatocellular(33;0.183)					CCGGATGGCAATGCGGACGTG	0.662													13	65					0	0	1	0	0	
GPR64	10149	broad.mit.edu	37	X	19031936	19031936	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:19031936C>T	uc004cyx.2	-	16	1131	c.967G>A	c.(967-969)GAA>AAA	p.E323K	GPR64_uc004cyy.2_Missense_Mutation_p.E320K|GPR64_uc004cyz.2_Missense_Mutation_p.E309K|GPR64_uc004czb.2_Missense_Mutation_p.E323K|GPR64_uc004czc.2_Missense_Mutation_p.E307K|GPR64_uc004czd.2_Missense_Mutation_p.E299K|GPR64_uc004cze.2_Missense_Mutation_p.E293K|GPR64_uc004czf.2_Missense_Mutation_p.E285K|GPR64_uc004cza.2_Missense_Mutation_p.E301K|GPR64_uc004cyw.2_Missense_Mutation_p.E307K|GPR64_uc010nfj.2_Missense_Mutation_p.E293K	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	323	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					GAGATCGTTTCAGACTGTGGG	0.567													24	152					0	0	1	0	0	
GPR64	10149	broad.mit.edu	37	X	19041547	19041547	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:19041547C>T	uc004cyx.2	-	13	699	c.535G>A	c.(535-537)GCA>ACA	p.A179T	GPR64_uc004cyy.2_Missense_Mutation_p.A176T|GPR64_uc004cyz.2_Missense_Mutation_p.A165T|GPR64_uc004czb.2_Missense_Mutation_p.A179T|GPR64_uc004czc.2_Missense_Mutation_p.A163T|GPR64_uc004czd.2_Missense_Mutation_p.A155T|GPR64_uc004cze.2_Missense_Mutation_p.A149T|GPR64_uc004czf.2_Missense_Mutation_p.A141T|GPR64_uc004cza.2_Missense_Mutation_p.A157T|GPR64_uc004cyw.2_Missense_Mutation_p.A163T|GPR64_uc010nfj.2_Missense_Mutation_p.A149T	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	179	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					TGGGCCTCTGCTGTAGCACAC	0.303													4	42					0	0	1	0	0	
CNKSR2	22866	broad.mit.edu	37	X	21627197	21627197	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:21627197C>T	uc004czx.1	+	20	2190	c.2154C>T	c.(2152-2154)TGC>TGT	p.C718C	CNKSR2_uc004czw.2_Silent_p.C718C|CNKSR2_uc011mjn.1_Silent_p.C669C|CNKSR2_uc011mjo.1_Silent_p.C688C|CNKSR2_uc004czy.2_Silent_p.C310C	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	718					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AGATGAGTTGCGCCAGTCCTT	0.458													4	42					0	0	1	0	0	
MAGEB18	286514	broad.mit.edu	37	X	26157824	26157824	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:26157824G>T	uc004dbq.1	+	2	909	c.722G>T	c.(721-723)AGG>ATG	p.R241M		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	241	MAGE.						protein binding			central_nervous_system(1)	1						GGGGATCCCAGGAAGGTCATG	0.493													3	27					0.00024832	0.000256562	1	1	0	
IL1RAPL1	11141	broad.mit.edu	37	X	29973260	29973260	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:29973260C>T	uc004dby.2	+	11	1922	c.1414C>T	c.(1414-1416)CGG>TGG	p.R472W		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	472	Cytoplasmic (Potential).|TIR.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TCAAAGCAAGCGGCTGATTAT	0.403													29	64					0	0	1	0	0	
IL1RAPL1	11141	broad.mit.edu	37	X	29973572	29973572	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:29973572A>T	uc004dby.2	+	11	2234	c.1726A>T	c.(1726-1728)AGT>TGT	p.S576C		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	576	Cytoplasmic (Potential).|Interaction with NCS1.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TTTAGATGTCAGTGAGCAAGG	0.498													6	33					0	0	1	0	0	
TAB3	257397	broad.mit.edu	37	X	30849602	30849602	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:30849602A>G	uc004dcj.2	-	11	2744	c.2081T>C	c.(2080-2082)TTT>TCT	p.F694S	TAB3_uc004dck.2_Missense_Mutation_p.F694S|TAB3_uc010ngl.2_Missense_Mutation_p.F666S	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	694	RanBP2-type.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						GTGGTTAAGAAAGGTGCAGCT	0.512													3	31					0	0	1	0	0	
FAM47B	170062	broad.mit.edu	37	X	34961020	34961020	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:34961020A>G	uc004ddi.1	+	1	90	c.72A>G	c.(70-72)AAA>AAG	p.K24K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	24										ovary(3)|breast(1)	4						ACTGTGACAAACCGCCTTCCA	0.622													4	25					0	0	1	0	0	
BCOR	54880	broad.mit.edu	37	X	39933947	39933947	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:39933947A>G	uc004den.3	-	4	944	c.652T>C	c.(652-654)TAC>CAC	p.Y218H	BCOR_uc004dep.3_Missense_Mutation_p.Y218H|BCOR_uc004deo.3_Missense_Mutation_p.Y218H|BCOR_uc004dem.3_Missense_Mutation_p.Y218H|BCOR_uc004deq.3_Missense_Mutation_p.Y218H	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	218					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AAGGCCTTGTACATGTTCAGT	0.552													4	96					0	0	1	0	0	
USP9X	8239	broad.mit.edu	37	X	41089041	41089041	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:41089041A>G	uc004dfb.2	+	43	8073	c.7440A>G	c.(7438-7440)AAA>AAG	p.K2480K	USP9X_uc004dfc.2_Intron	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	2480					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						AGGTAAAAAAAGCCACCAGTG	0.353													29	48					0	0	1	0	0	
ZNF157	7712	broad.mit.edu	37	X	47269695	47269695	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:47269695T>C	uc004dhr.1	+	2	162	c.93T>C	c.(91-93)GAT>GAC	p.D31D		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	31	KRAB.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CATTCGAGGATGTGGCTGTGG	0.502													13	160					0	0	1	0	0	
ARAF	369	broad.mit.edu	37	X	47428435	47428435	+	Splice_Site	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:47428435A>G	uc011mlq.1	+	12	1435	c.1302_splice	c.e12+1	p.N434_splice		NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene						intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	GTCTAACAGTATCTATCTGTC	0.567											OREG0019759	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	18					0	0	1	0	0	
SYN1	6853	broad.mit.edu	37	X	47478894	47478894	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:47478894C>T	uc004die.2	-	1	363	c.234G>A	c.(232-234)TCG>TCA	p.S78S	SYN1_uc004did.2_Silent_p.S78S	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	78	B; linker.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						TGGACAGCGACGAGAAGAAGC	0.771													4	15					0	0	1	0	0	
ELK1	2002	broad.mit.edu	37	X	47498485	47498485	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:47498485G>A	uc004dik.3	-	4	785	c.463C>T	c.(463-465)CGC>TGC	p.R155C	ELK1_uc010nhv.2_Missense_Mutation_p.R155C|ELK1_uc010nhw.2_Missense_Mutation_p.R45C|ELK1_uc004dil.3_Intron	NM_001114123	NP_001107595	P19419	ELK1_HUMAN	ELK1 protein	155					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						AGGCCCGAGCGCATGTACTCG	0.657													3	7					0	0	1	0	0	
HDAC6	10013	broad.mit.edu	37	X	48681196	48681196	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:48681196G>A	uc011mmi.1	+	24	2599	c.2504G>A	c.(2503-2505)CGG>CAG	p.R835Q	HDAC6_uc004dks.1_Missense_Mutation_p.R835Q|HDAC6_uc010nig.1_Missense_Mutation_p.R683Q|HDAC6_uc004dkt.1_Missense_Mutation_p.R835Q|HDAC6_uc011mmk.1_Missense_Mutation_p.R816Q|HDAC6_uc004dkv.1_Missense_Mutation_p.R483Q|HDAC6_uc004dkw.1_Missense_Mutation_p.R483Q|HDAC6_uc004dkx.1_Missense_Mutation_p.R198Q	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	835					aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	CGCAGCTTACGGGTCATGAGT	0.622													12	29					0	0	1	0	0	
CCNB3	85417	broad.mit.edu	37	X	50052659	50052659	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:50052659C>T	uc004dox.3	+	6	1788	c.1490C>T	c.(1489-1491)ACT>ATT	p.T497I	CCNB3_uc004doy.2_Missense_Mutation_p.T497I|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	497					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AAGCATGCCACTCAGGGGACA	0.433													5	47					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	X	53172242	53172242	+	RNA	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:53172242C>T	uc004dry.2	+	3		c.1416C>T								full-length cDNA clone CS0DC007YA11 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		CGGATGTCCACGTCACACTTC	0.557													46	109					0	0	1	0	0	
KDM5C	8242	broad.mit.edu	37	X	53247093	53247093	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:53247093C>T	uc004drz.2	-	4	940	c.407G>A	c.(406-408)CGG>CAG	p.R136Q	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.R69Q|KDM5C_uc004dsa.2_Missense_Mutation_p.R136Q	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	136	ARID.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						CTGGGCTACCCGAGCCCACCG	0.483			N|F|S		clear cell renal carcinoma								5	46					0	0	1	0	0	
SMC1A	8243	broad.mit.edu	37	X	53436412	53436412	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:53436412C>T	uc004dsg.2	-	8	1346	c.1277G>A	c.(1276-1278)CGG>CAG	p.R426Q	SMC1A_uc011moe.1_Missense_Mutation_p.R404Q|SMC1A_uc011mof.1_Missense_Mutation_p.R192Q	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	426	Potential.				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						TTCAATTTCCCGCAGCTTTTG	0.493													35	88					0	0	1	0	0	
HUWE1	10075	broad.mit.edu	37	X	53586416	53586416	+	Missense_Mutation	SNP	C	T	T	rs142176360		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:53586416C>T	uc004dsp.2	-	57	8216	c.7814G>A	c.(7813-7815)CGC>CAC	p.R2605H	HUWE1_uc004dsn.2_Missense_Mutation_p.R1429H|uc004dss.2_5'Flank|MIRLET7F2_hsa-let-7f-2|MI0000068_5'Flank	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2605					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TACCAGGAGGCGGGCCCGACC	0.572													29	37					0	0	1	0	0	
PHF8	23133	broad.mit.edu	37	X	54044103	54044103	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:54044103G>A	uc004dsu.2	-	5	626	c.553C>T	c.(553-555)CAC>TAC	p.H185Y	PHF8_uc004dst.2_Missense_Mutation_p.H149Y|PHF8_uc004dsv.2_Missense_Mutation_p.H15Y|PHF8_uc004dsw.2_Missense_Mutation_p.H149Y|PHF8_uc004dsy.2_Missense_Mutation_p.H149Y	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	185					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						CCAACATAGTGTTCAACATCC	0.473													15	53					0	0	1	0	0	
FAM120C	54954	broad.mit.edu	37	X	54162023	54162023	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:54162023T>C	uc004dsz.3	-	6	1356	c.1273A>G	c.(1273-1275)AGG>GGG	p.R425G	FAM120C_uc011moh.1_Missense_Mutation_p.R425G	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	425										ovary(1)|central_nervous_system(1)	2						TTTCCAAGCCTATTATTCCGA	0.408													7	22					0	0	1	0	0	
FGD1	2245	broad.mit.edu	37	X	54482797	54482797	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:54482797C>A	uc004dtg.2	-	10	2432	c.1698G>T	c.(1696-1698)GAG>GAT	p.E566D	FGD1_uc011moi.1_Missense_Mutation_p.E324D	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	566					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TATGCATTCGCTCCTGGCAAA	0.547													3	49					1.024e-07	1.08887e-07	1	1	0	
FGD1	2245	broad.mit.edu	37	X	54482983	54482983	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:54482983C>T	uc004dtg.2	-	9	2388	c.1654G>A	c.(1654-1656)GCC>ACC	p.A552T	FGD1_uc011moi.1_Missense_Mutation_p.A310T	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	552	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GCTGCTGTGGCGATCAGCTCC	0.537													7	42					0	0	1	0	0	
PAGE2	203569	broad.mit.edu	37	X	55116967	55116967	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:55116967A>C	uc004duf.1	+	3	171	c.117A>C	c.(115-117)GAA>GAC	p.E39D		NM_207339	NP_997222	Q7Z2X7	GGEE2_HUMAN	P antigen family, member 2	39										ovary(2)	2						AACGTCAAGAAGAGGAACCAC	0.418													4	31					0	0	1	0	0	
USP51	158880	broad.mit.edu	37	X	55515232	55515232	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:55515232C>T	uc004dun.1	-	2	220	c.141G>A	c.(139-141)GCG>GCA	p.A47A	USP51_uc011moo.1_5'UTR	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	47					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GTCTCGAAGACGCCTTCGTAG	0.667													10	31					0	0	1	0	0	
ZXDB	158586	broad.mit.edu	37	X	57619668	57619668	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:57619668C>T	uc004dvd.2	+	1	1400	c.1187C>T	c.(1186-1188)GCG>GTG	p.A396V		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	396	C2H2-type 5.|Required for interaction with ZXDC (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TACCAGTGCGCGTTTTCTGGC	0.542													24	76					0	0	1	0	0	
FAM155B	27112	broad.mit.edu	37	X	68748853	68748853	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:68748853G>A	uc004dxk.2	+	2	927	c.879G>A	c.(877-879)TGG>TGA	p.W293*		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	293						integral to membrane				ovary(1)|breast(1)	2						ACAAGGCCTGGCTGTGCTCAG	0.592													7	43					0	0	1	0	0	
NLGN3	54413	broad.mit.edu	37	X	70384072	70384072	+	Silent	SNP	C	T	T	rs151276700	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:70384072C>T	uc004dzd.1	+	5	1007	c.807C>T	c.(805-807)AGC>AGT	p.S269S	NLGN3_uc010nlb.1_Silent_p.S229S|NLGN3_uc004dzb.2_Silent_p.S249S|NLGN3_uc004dzc.2_Silent_p.S132S|NLGN3_uc011mps.1_Silent_p.S229S|NLGN3_uc004dze.2_Silent_p.S67S|NLGN3_uc011mpr.1_Silent_p.S229S	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	269	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					GCTGGGTGAGCGAGAATATTG	0.577													6	61					0	0	1	0	0	
ABCB7	22	broad.mit.edu	37	X	74288914	74288914	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:74288914A>C	uc004eca.2	-	12	1612	c.1587T>G	c.(1585-1587)ATT>ATG	p.I529M	ABCB7_uc004ebz.2_Missense_Mutation_p.I530M|ABCB7_uc011mqn.1_Missense_Mutation_p.I503M|ABCB7_uc010nls.2_Missense_Mutation_p.I490M|ABCB7_uc010nlt.2_Missense_Mutation_p.I489M	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	529	ABC transporter.				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						CAGCAAGATAAATGCTACCCT	0.383													4	101					0	0	1	0	0	
ATRX	546	broad.mit.edu	37	X	76937066	76937066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:76937066G>A	uc004ecp.3	-	9	3914	c.3682C>T	c.(3682-3684)CCT>TCT	p.P1228S	ATRX_uc004ecq.3_Missense_Mutation_p.P1190S|ATRX_uc004eco.3_Missense_Mutation_p.P1013S|ATRX_uc004ecr.2_Missense_Mutation_p.P1160S|ATRX_uc010nlx.1_Missense_Mutation_p.P1199S|ATRX_uc010nly.1_Missense_Mutation_p.P1173S	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1228					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCAGTCACAGGCTTAATTTTC	0.358			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						43	149					0	0	1	0	0	
PGK1	5230	broad.mit.edu	37	X	77381299	77381299	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:77381299C>A	uc004ecz.3	+	11	1398	c.1226C>A	c.(1225-1227)CCT>CAT	p.P409H	PGK1_uc010nlz.2_RNA|PGK1_uc011mqq.1_Missense_Mutation_p.P381H	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1	409					gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						AAAGTCCTTCCTGGGGTGGAT	0.443													36	340					1.00776e-21	1.10737e-21	1	1	0	
SH3BGRL	6451	broad.mit.edu	37	X	80532615	80532615	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:80532615G>A	uc004eef.2	+	2	575	c.178G>A	c.(178-180)GCC>ACC	p.A60T	SH3BGRL_uc011mqs.1_RNA|SH3BGRL_uc010nml.2_RNA|SH3BGRL_uc010nmm.2_Missense_Mutation_p.A97T|SH3BGRL_uc010nmn.2_Missense_Mutation_p.A97T	NM_003022	NP_003013	O75368	SH3L1_HUMAN	SH3 domain binding glutamic acid-rich protein	60						cytoplasm|nucleus	SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		all_lung(315;5.94e-05)				TAGTCGACCAGCCACAGGTTA	0.398													5	44					0	0	1	0	0	
FAM133A	286499	broad.mit.edu	37	X	92964422	92964422	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:92964422G>T	uc004efr.1	+	4	317	c.4G>T	c.(4-6)GGG>TGG	p.G2W		NM_173698	NP_775969	Q8N9E0	F133A_HUMAN	hypothetical protein LOC286499	2											0						AGGCACCATGGGGAAGCGGGA	0.448													5	23					0.217242	0.217624	1	1	0	
PCDH19	57526	broad.mit.edu	37	X	99663156	99663156	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:99663156C>T	uc010nmz.2	-	1	2116	c.440G>A	c.(439-441)CGC>CAC	p.R147H	PCDH19_uc004efw.3_Missense_Mutation_p.R147H|PCDH19_uc004efx.3_Missense_Mutation_p.R147H	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	147	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CAGCGGGATGCGCGTGCCAGG	0.597													41	101					0	0	1	0	0	
CSTF2	1478	broad.mit.edu	37	X	100078931	100078931	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:100078931A>T	uc004egh.2	+	5	559	c.501A>T	c.(499-501)CAA>CAT	p.Q167H	CSTF2_uc010nnd.2_Missense_Mutation_p.Q167H|CSTF2_uc004egi.2_Missense_Mutation_p.Q167H	NM_001325	NP_001316	P33240	CSTF2_HUMAN	cleavage stimulation factor subunit 2	167	Interactions with CSTF3 and SYMPK.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cleavage body|mRNA cleavage and polyadenylation specificity factor complex	nucleotide binding|protein binding|protein binding|RNA binding			skin(1)	1						AGAACCCTCAACTGGCTTATG	0.453													12	141					0	0	1	0	0	
TRMT2B	79979	broad.mit.edu	37	X	100292924	100292924	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:100292924G>T	uc004egq.2	-	4	719	c.420C>A	c.(418-420)CTC>CTA	p.L140L	TRMT2B_uc004egp.2_RNA|TRMT2B_uc004egr.2_Silent_p.L140L|TRMT2B_uc004egs.2_Silent_p.L140L|TRMT2B_uc004egt.2_Silent_p.L140L|TRMT2B_uc004egu.2_Silent_p.L21L|TRMT2B_uc004egv.2_Intron	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B	140							tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						TAATAGGATGGAGAAGACAAG	0.358													93	277					7.0969e-38	7.85893e-38	1	1	0	
TMEM35	59353	broad.mit.edu	37	X	100349693	100349693	+	Silent	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:100349693G>A	uc004egw.2	+	2	408	c.252G>A	c.(250-252)GGG>GGA	p.G84G		NM_021637	NP_067650	Q53FP2	TMM35_HUMAN	transmembrane protein 35	84						cytoplasmic membrane-bounded vesicle|integral to membrane|peroxisomal membrane					0						TTGTGCCTGGGCGTCCCAAAG	0.537													10	155					0	0	1	0	0	
CENPI	2491	broad.mit.edu	37	X	100400187	100400187	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:100400187A>C	uc004egx.2	+	16	1970	c.1700A>C	c.(1699-1701)AAG>ACG	p.K567T	CENPI_uc011mrg.1_Missense_Mutation_p.K567T	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	567					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						TTCTATGAGAAGGTAGTACAC	0.378													9	118					0	0	1	0	0	
ARMCX3	51566	broad.mit.edu	37	X	100880023	100880023	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:100880023T>C	uc004ehz.1	+	5	587	c.54T>C	c.(52-54)GCT>GCC	p.A18A	ARMCX3_uc004eia.1_Silent_p.A18A|ARMCX3_uc004eib.1_Silent_p.A18A|ARMCX3_uc004eic.1_Silent_p.A18A	NM_016607	NP_057691	Q9UH62	ARMX3_HUMAN	armadillo repeat containing, X-linked 3	18	Helical; (Potential).					integral to membrane	binding			ovary(1)|lung(1)	2						TGATTGGGGCTGGCGCCTGCT	0.532													8	73					0	0	1	0	0	
GLRA4	441509	broad.mit.edu	37	X	102962291	102962291	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:102962291C>T	uc011mse.1	-	9	1656	c.1235G>A	c.(1234-1236)CGG>CAG	p.R412Q		NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	412	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GTAGAGTTTCCGCGTGGTTTC	0.512													19	58					0	0	1	0	0	
TEX13A	56157	broad.mit.edu	37	X	104464985	104464985	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:104464985C>T	uc004ema.2	-	2	209	c.97G>A	c.(97-99)GAG>AAG	p.E33K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E33K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	33						intracellular	zinc ion binding			ovary(2)	2						AGATAGAACTCGGGGCCTTTC	0.552													10	53					0	0	1	0	0	
RNF128	79589	broad.mit.edu	37	X	105970509	105970509	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:105970509C>T	uc004eml.2	+	1	616	c.366C>T	c.(364-366)CGC>CGT	p.R122R	RNF128_uc004emk.2_Intron	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	122	PA.					endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCATCCAACGCGGCGGGGGCT	0.612													17	47					0	0	1	0	0	
MORC4	79710	broad.mit.edu	37	X	106184843	106184843	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:106184843G>A	uc004emu.3	-	17	2923	c.2680C>T	c.(2680-2682)CGG>TGG	p.R894W	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.A881V|MORC4_uc004emw.3_Missense_Mutation_p.A629V	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	894							ATP binding|zinc ion binding			ovary(1)	1						ATACGTAGCCGCGTAAGCTTT	0.478													17	30					0	0	1	0	0	
COL4A5	1287	broad.mit.edu	37	X	107866040	107866040	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:107866040G>A	uc004enz.1	+	33	3104	c.2902G>A	c.(2902-2904)GAA>AAA	p.E968K	COL4A5_uc011mso.1_Missense_Mutation_p.E968K|COL4A5_uc004eob.1_Missense_Mutation_p.E576K	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	968	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AGAGAAGGGGGAACCTGGCTT	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				15	49					0	0	1	0	0	
IRS4	8471	broad.mit.edu	37	X	107976205	107976205	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:107976205C>T	uc004eoc.2	-	1	3403	c.3370G>A	c.(3370-3372)GCA>ACA	p.A1124T		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1124	Ala-rich.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GTCGGCTCTGCAGCCGAAGCG	0.632													8	63					0	0	1	0	0	
IRS4	8471	broad.mit.edu	37	X	107979509	107979509	+	Silent	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:107979509T>C	uc004eoc.2	-	1	99	c.66A>G	c.(64-66)GCA>GCG	p.A22A		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	22	Poly-Ala.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GAGCTGCCGCTGCCGCCGCTG	0.617													20	35					0	0	1	0	0	
RGAG1	57529	broad.mit.edu	37	X	109694908	109694908	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:109694908C>A	uc004eor.1	+	3	1309	c.1063C>A	c.(1063-1065)CCC>ACC	p.P355T	RGAG1_uc011msr.1_Missense_Mutation_p.P355T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	355								p.P355H(1)		lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GACGGCCCTACCCTCTGGAGT	0.537													25	313					2.12542e-12	2.30883e-12	1	1	0	
DCX	1641	broad.mit.edu	37	X	110653321	110653321	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:110653321A>G	uc004epd.2	-	2	721	c.549T>C	c.(547-549)CGT>CGC	p.R183R	DCX_uc011msv.1_Silent_p.R183R|DCX_uc004epe.2_Silent_p.R102R|DCX_uc004epf.2_Silent_p.R102R|DCX_uc004epg.2_Silent_p.R102R	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	183	Doublecortin 1.		R -> S (in LISX1).		axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TGTAAATGTAACGCACTCCCT	0.522													23	114					0	0	1	0	0	
IL13RA1	3597	broad.mit.edu	37	X	117907898	117907898	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:117907898G>A	uc004eqs.2	+	9	1109	c.1066G>A	c.(1066-1068)GTC>ATC	p.V356I	IL13RA1_uc004eqt.1_Missense_Mutation_p.V356I	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	356	Helical; (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						TCCAGTCATCGTCGCAGGTGC	0.423													57	180					0	0	1	0	0	
KIAA1210	57481	broad.mit.edu	37	X	118222607	118222607	+	Silent	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:118222607A>G	uc004era.3	-	11	2586	c.2586T>C	c.(2584-2586)ACT>ACC	p.T862T		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	862										ovary(4)|skin(1)	5						AATCATCAGAAGTGTTGTACT	0.498													3	32					0	0	1	0	0	
SLC25A43	203427	broad.mit.edu	37	X	118586945	118586945	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:118586945C>T	uc004erd.2	+	5	1287	c.943C>T	c.(943-945)CAG>TAG	p.Q315*	SLC25A43_uc011mtt.1_3'UTR	NM_145305	NP_660348	Q8WUT9	S2543_HUMAN	mitochondrial solute carrier protein	315					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			skin(1)	1						AGGAGTCGATCAGAGTTTGCA	0.378													5	163					0	0	1	0	0	
SLC25A5	292	broad.mit.edu	37	X	118603924	118603924	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:118603924C>T	uc004erh.3	+	2	528	c.412C>T	c.(412-414)CGT>TGT	p.R138C	LOC100303728_uc004ere.1_5'Flank|LOC100303728_uc004erg.1_5'Flank	NM_001152	NP_001143	P05141	ADT2_HUMAN	adenine nucleotide translocator 2	138	Solcar 2.|Helical; Name=3; (By similarity).				chromosome segregation|energy reserve metabolic process|interspecies interaction between organisms|regulation of insulin secretion|viral reproduction	integral to plasma membrane|mitochondrial inner membrane|mitochondrial nucleoid|MMXD complex	adenine transmembrane transporter activity|protein binding			ovary(1)	1					Clodronate(DB00720)	TGATTTTGCCCGTACCCGTCT	0.522													14	131					0	0	1	0	0	
GRIA3	2892	broad.mit.edu	37	X	122538696	122538696	+	Silent	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:122538696C>T	uc004etq.3	+	11	1724	c.1431C>T	c.(1429-1431)GAC>GAT	p.D477D	GRIA3_uc004etr.3_Silent_p.D477D|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Silent_p.D461D	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	477	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCGTTGGTGACGGGAAATATG	0.398													14	234					0	0	1	0	0	
DCAF12L2	340578	broad.mit.edu	37	X	125299634	125299634	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:125299634G>T	uc004euk.1	-	1	301	c.274C>A	c.(274-276)CTG>ATG	p.L92M		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	92										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCCAGGTCCAGCTGGCGCTCC	0.677													9	51					9.31168e-06	9.77412e-06	1	1	0	
DCAF12L1	139170	broad.mit.edu	37	X	125686437	125686437	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:125686437G>A	uc004eul.2	-	1	406	c.155C>T	c.(154-156)GCG>GTG	p.A52V		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	52										skin(3)|ovary(1)	4						CAGATAGTGCGCCATCGAGCG	0.711													16	67					0	0	1	0	0	
IGSF1	3547	broad.mit.edu	37	X	130412510	130412510	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:130412510C>T	uc004ewd.2	-	12	2204	c.1966G>A	c.(1966-1968)GGG>AGG	p.G656R	IGSF1_uc004ewe.3_Missense_Mutation_p.G650R|IGSF1_uc004ewf.2_Missense_Mutation_p.G636R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	656	Extracellular (Potential).|Ig-like C2-type 6.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGGTAGCTCCCGGTGTGGCTC	0.632													5	126					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135390962	135390962	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:135390962A>C	uc004ezu.1	+	4	317	c.26A>C	c.(25-27)AAG>ACG	p.K9T	GPR112_uc010nsb.1_Missense_Mutation_p.K9T	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	9					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATATATCAGAAGCTTTATGGA	0.308													13	140					0	0	1	0	0	
BRS3	680	broad.mit.edu	37	X	135574170	135574170	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:135574170T>A	uc004ezv.1	+	3	985	c.836T>A	c.(835-837)CTG>CAG	p.L279Q		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	279	Helical; Name=6; (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTGGTGGCTCTGTTTGCCCTC	0.393													33	94					0	0	1	0	0	
ATP11C	286410	broad.mit.edu	37	X	138864718	138864718	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:138864718G>A	uc004faz.2	-	18	2048	c.1949C>T	c.(1948-1950)GCA>GTA	p.A650V	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.A650V	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	650	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					GTCTTCAACTGCAGTGGCTCC	0.348													11	53					0	0	1	0	0	
MAGEC3	139081	broad.mit.edu	37	X	140985571	140985571	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:140985571G>A	uc011mwp.1	+	8	1885	c.1885G>A	c.(1885-1887)GCC>ACC	p.A629T	MAGEC3_uc004fbs.2_3'UTR|MAGEC3_uc010nsj.2_3'UTR	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	629	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TACTGCCATGGCCAGTGCAAG	0.507													20	88					0	0	1	0	0	
SLITRK2	84631	broad.mit.edu	37	X	144905442	144905442	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:144905442A>G	uc004fcd.2	+	5	2489	c.1499A>G	c.(1498-1500)AAT>AGT	p.N500S	SLITRK2_uc010nsp.2_Missense_Mutation_p.N500S|SLITRK2_uc010nso.2_Missense_Mutation_p.N500S|SLITRK2_uc011mwq.1_Missense_Mutation_p.N500S|SLITRK2_uc011mwr.1_Missense_Mutation_p.N500S|SLITRK2_uc011mws.1_Missense_Mutation_p.N500S|SLITRK2_uc004fcg.2_Missense_Mutation_p.N500S|SLITRK2_uc011mwt.1_Missense_Mutation_p.N500S	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	500	Extracellular (Potential).|LRR 12.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					ACCAGGCTGAATCTGAGAAAC	0.478													11	122					0	0	1	0	0	
MIR506	574511	broad.mit.edu	37	X	146312328	146312328	+	RNA	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:146312328A>C	hsa-mir-506|MI0003193	-			c.34A>C																				0						TTCCTGAATAAGGCACTACAC	0.423													38	79					0	0	1	0	0	
AFF2	2334	broad.mit.edu	37	X	148049194	148049194	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:148049194A>C	uc004fcp.2	+	15	3718	c.3239A>C	c.(3238-3240)AAG>ACG	p.K1080T	AFF2_uc004fcq.2_Missense_Mutation_p.K1070T|AFF2_uc004fcr.2_Missense_Mutation_p.K1041T|AFF2_uc011mxb.1_Missense_Mutation_p.K1045T|AFF2_uc004fcs.2_Missense_Mutation_p.K1045T|AFF2_uc011mxc.1_Missense_Mutation_p.K721T	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	1080					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGAAGCTAAGAAGCTGAAG	0.343													7	49					0	0	1	0	0	
MAGEA12	4111	broad.mit.edu	37	X	151900176	151900176	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:151900176T>C	uc010ntp.2	-	3	979	c.625A>G	c.(625-627)ATC>GTC	p.I209V	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.I209V	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	209	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTTTGCGATTATGGCCAGG	0.572													17	229					0	0	1	0	0	
ATP2B3	492	broad.mit.edu	37	X	152818575	152818575	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:152818575G>A	uc004fht.1	+	11	2032	c.1906G>A	c.(1906-1908)GAG>AAG	p.E636K	ATP2B3_uc004fhs.1_Missense_Mutation_p.E636K	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	636	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAAGATCATCGAGCCGATGGC	0.627													13	42					0	0	1	0	0	
ABCD1	215	broad.mit.edu	37	X	153006123	153006123	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:153006123A>G	uc004fif.2	+	7	2129	c.1730A>G	c.(1729-1731)GAA>GGA	p.E577G	ABCD1_uc004fig.2_Missense_Mutation_p.E77G|ABCD1_uc004fih.2_5'Flank	NM_000033	NP_000024	P33897	ABCD1_HUMAN	ATP-binding cassette, sub-family D (ALD), member	577	ABC transporter.				fatty acid beta-oxidation using acyl-CoA oxidase|peroxisomal membrane transport|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|identical protein binding|peroxisomal fatty-acyl-CoA transporter activity				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGGACCTGGAAGCCATCCTG	0.642													11	131					0	0	1	0	0	
PLXNB3	5365	broad.mit.edu	37	X	153038720	153038720	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:153038720G>A	uc004fii.2	+	18	3116	c.2942G>A	c.(2941-2943)CGT>CAT	p.R981H	PLXNB3_uc010nuk.2_Missense_Mutation_p.R1004H|PLXNB3_uc011mzd.1_Missense_Mutation_p.R620H|PLXNB3_uc004fij.1_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	981	IPT/TIG 2.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					ATCGTGTGCCGTACCAGGCCC	0.667													7	23					0	0	1	0	0	
HCFC1	3054	broad.mit.edu	37	X	153225829	153225829	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:153225829A>G	uc004fjp.2	-	7	1469	c.941T>C	c.(940-942)CTG>CCG	p.L314P		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	314					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GTTGTCCTCCAGTGTATCCAT	0.632													5	37					0	0	1	0	0	
IRAK1	3654	broad.mit.edu	37	X	153281508	153281508	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:153281508G>A	uc004fjs.1	-	10	1356	c.1277C>T	c.(1276-1278)ACG>ATG	p.T426M	IRAK1_uc004fjr.1_Missense_Mutation_p.T426M|IRAK1_uc004fjt.1_Missense_Mutation_p.T426M|IRAK1_uc010nur.2_Intron|IRAK1_uc004fju.2_Missense_Mutation_p.T452M	NM_001569	NP_001560	P51617	IRAK1_HUMAN	interleukin-1 receptor-associated kinase 1	426	Protein kinase.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|lipopolysaccharide-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein autophosphorylation|protein oligomerization|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transmembrane receptor protein serine/threonine kinase signaling pathway	cytosol|endosome membrane|interleukin-1 receptor complex	ATP binding|NF-kappaB-inducing kinase activity|protein binding|protein heterodimerization activity|protein homodimerization activity|ubiquitin-protein ligase activity			lung(5)|ovary(2)|breast(1)|central_nervous_system(1)	9	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGCACCGTGCGTCTTCACAGC	0.642													25	67					0	0	1	0	0	
TKTL1	8277	broad.mit.edu	37	X	153539311	153539311	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:153539311G>T	uc004fkg.2	+	4	661	c.475G>T	c.(475-477)GGA>TGA	p.G159*	TKTL1_uc011mzl.1_Nonsense_Mutation_p.G153*|TKTL1_uc011mzm.1_Intron|TKTL1_uc004fkh.2_Nonsense_Mutation_p.G103*	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	159					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAACCGCCTGGGACACAGTGG	0.512													11	73					4.36969e-10	4.69023e-10	1	1	0	
RAB39B	116442	broad.mit.edu	37	X	154490316	154490316	+	Silent	SNP	G	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:154490316G>T	uc004fne.2	-	2	693	c.414C>A	c.(412-414)GCC>GCA	p.A138A		NM_171998	NP_741995	Q96DA2	RB39B_HUMAN	RAB39B, member RAS oncogene family	138					protein transport|small GTPase mediated signal transduction|synapse organization|vesicle-mediated transport	Golgi apparatus|plasma membrane	GTP binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CCAGTTTCTCGGCCTCGTGGC	0.488													16	71					4.14922e-12	4.50441e-12	1	1	0	
RAB39B	116442	broad.mit.edu	37	X	154493486	154493486	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chrX:154493486C>T	uc004fne.2	-	1	367	c.88G>A	c.(88-90)GAG>AAG	p.E30K		NM_171998	NP_741995	Q96DA2	RB39B_HUMAN	RAB39B, member RAS oncogene family	30					protein transport|small GTPase mediated signal transduction|synapse organization|vesicle-mediated transport	Golgi apparatus|plasma membrane	GTP binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					AAGCGACCCTCGGTGAAGCGG	0.602													37	145					0	0	1	0	0	
ZC3H12A	80149	broad.mit.edu	37	1	37947230	37947231	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:37947230_37947231insA	uc001cbb.3	+	4	762_763	c.612_613insA	c.(610-615)AAGAAGfs	p.K204fs	ZC3H12A_uc001cbc.1_5'UTR	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	204_205					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				AACTGGAGAAGAAGAAGATCCT	0.604													46	93	---	---	---	---						.
ZC3H12A	80149	broad.mit.edu	37	1	37948555	37948555	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:37948555delG	uc001cbb.3	+	6	1293	c.1143delG	c.(1141-1143)CTGfs	p.L381fs	ZC3H12A_uc001cbc.1_Frame_Shift_Del_p.L176fs	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	381					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGAAGAAGCTGGGGGCCCAGG	0.627													7	14	---	---	---	---						.
LOC645676	645676	broad.mit.edu	37	1	155532627	155532628	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr1:155532627_155532628insC	uc010pge.1	+	1	856_857	c.532_533insC	c.(532-534)TCCfs	p.S178fs	ASH1L_uc001fkt.2_5'Flank|ASH1L_uc009wqq.2_5'Flank|ASH1L_uc009wqr.1_5'Flank|LOC645676_uc001fkv.2_Intron	NR_027023				SubName: Full=cDNA FLJ44595 fis, clone BLADE2004849;												0						tcttctctcctccccccccttc	0.450													3	5	---	---	---	---						.
LARP4B	23185	broad.mit.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:890939delT	uc001ifs.1	-	5	528	c.487delA	c.(487-489)ACAfs	p.T163fs		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	163	HTH La-type RNA-binding.						nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						AATTCCAATGTTTTTTTAAGT	0.353													44	78	---	---	---	---						.
SVIL	6840	broad.mit.edu	37	10	29762771	29762772	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:29762771_29762772insC	uc001iut.1	-	30	6277_6278	c.5524_5525insG	c.(5524-5526)GCCfs	p.A1842fs	LOC387647_uc001iup.2_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Frame_Shift_Ins_p.A756fs|SVIL_uc001iuu.1_Frame_Shift_Ins_p.A1416fs	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1842	Gelsolin-like 3.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				ACTCACCTGGGCCCCCCTTTCC	0.639													28	57	---	---	---	---						.
PSD	5662	broad.mit.edu	37	10	104176203	104176203	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr10:104176203delC	uc001kvg.1	-	2	1120	c.593delG	c.(592-594)GGCfs	p.G198fs	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Frame_Shift_Del_p.G198fs|PSD_uc001kvi.1_Frame_Shift_Del_p.G198fs|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	198					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CTCAGGGGGGCCCCCCAGCCC	0.652													7	16	---	---	---	---						.
CCDC38	120935	broad.mit.edu	37	12	96260859	96260860	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr12:96260859_96260860insA	uc001tek.1	-	16	1920_1921	c.1686_1687insT	c.(1684-1689)TTTACTfs	p.F562fs		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	562_563										skin(1)	1						TTTATTCAAGTAAAAAAATATT	0.287													14	32	---	---	---	---						.
MYCBP2	23077	broad.mit.edu	37	13	77671669	77671669	+	Frame_Shift_Del	DEL	T	-	-	rs149154232		TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr13:77671669delT	uc001vkf.2	-	57	9597	c.9506delA	c.(9505-9507)AAGfs	p.K3169fs	MYCBP2_uc010aev.2_Frame_Shift_Del_p.K2573fs|MYCBP2_uc001vkg.1_Frame_Shift_Del_p.K692fs	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3169	Lys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ctttttttcctttttggactt	0.313													3	6	---	---	---	---						.
MDGA2	161357	broad.mit.edu	37	14	47530771	47530771	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:47530771delT	uc001wwj.3	-	7	1195	c.999delA	c.(997-999)AAAfs	p.K333fs	MDGA2_uc001wwi.3_Frame_Shift_Del_p.K104fs|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	333					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						AAAATCGTCCTTTTTTTAATG	0.353													13	13	---	---	---	---						.
SOS2	6655	broad.mit.edu	37	14	50606660	50606661	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr14:50606660_50606661insA	uc001wxs.3	-	17	2882_2883	c.2784_2785insT	c.(2782-2787)TTTGGAfs	p.F928fs	SOS2_uc010tql.1_Frame_Shift_Ins_p.F895fs|SOS2_uc010tqm.1_RNA	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	928_929	Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					AGTAACTTACCAAAAAAAGGCA	0.188													23	40	---	---	---	---						.
SLC30A4	7782	broad.mit.edu	37	15	45814242	45814243	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:45814242_45814243insTC	uc001zvj.2	-	2	622_623	c.310_311insGA	c.(310-312)ATAfs	p.I104fs	C15orf21_uc010beg.1_Intron|C15orf21_uc010beh.1_Intron|C15orf21_uc010bei.1_Intron|C15orf21_uc010bej.1_Intron|C15orf21_uc001zvm.1_Intron|C15orf21_uc001zvn.1_Intron	NM_013309	NP_037441	O14863	ZNT4_HUMAN	solute carrier family 30 (zinc transporter),	104	Cytoplasmic (Potential).				regulation of sequestering of zinc ion|response to toxin	endosome membrane|integral to membrane|late endosome	zinc ion transmembrane transporter activity				0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.58e-16)|GBM - Glioblastoma multiforme(94;2.15e-06)		CTGCTTCAGTATCTCTCTCTGT	0.475													69	67	---	---	---	---						.
GLDN	342035	broad.mit.edu	37	15	51692688	51692688	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:51692688delT	uc002aba.2	+	8	1189	c.1020delT	c.(1018-1020)CATfs	p.H340fs	GLDN_uc002abb.2_Frame_Shift_Del_p.H216fs	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	340	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		TGACAGAGCATTTTTCAGGTA	0.448													206	149	---	---	---	---						.
IGDCC4	57722	broad.mit.edu	37	15	65678319	65678319	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:65678319delG	uc002aou.1	-	18	3240	c.3030delC	c.(3028-3030)CCCfs	p.P1010fs	IGDCC4_uc002aot.1_Frame_Shift_Del_p.P598fs	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1010	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						CTGGGGGGCTGGGGGGGCCAA	0.662											OREG0023195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	16	---	---	---	---						.
DENND4A	10260	broad.mit.edu	37	15	66030118	66030119	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr15:66030118_66030119insA	uc002aph.2	-	7	1344_1345	c.966_967insT	c.(964-969)TTTGATfs	p.F322fs	DENND4A_uc002api.2_Frame_Shift_Ins_p.F322fs|DENND4A_uc002apj.3_Frame_Shift_Ins_p.F322fs|DENND4A_uc010ujj.1_Frame_Shift_Ins_p.F322fs	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	322_323	DENN.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CTGAATGCATCAAAAAAAGGCC	0.381													9	8	---	---	---	---						.
ARHGAP17	55114	broad.mit.edu	37	16	24950745	24950745	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:24950745delC	uc002dnb.2	-	17	1757	c.1664delG	c.(1663-1665)GGTfs	p.G555fs	ARHGAP17_uc002dmy.2_5'Flank|ARHGAP17_uc002dmz.2_Frame_Shift_Del_p.G79fs|ARHGAP17_uc002dna.2_Frame_Shift_Del_p.G282fs|ARHGAP17_uc002dnc.2_Intron|ARHGAP17_uc010vcf.1_Intron	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	555	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		GACAGTCCCACCCCCAGAGCT	0.687													14	16	---	---	---	---						.
FUK	197258	broad.mit.edu	37	16	70513191	70513191	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr16:70513191delC	uc002eyy.2	+	23	3096	c.3038delC	c.(3037-3039)GCCfs	p.A1013fs	FUK_uc010cft.2_Frame_Shift_Del_p.A1019fs|FUK_uc002eyz.2_Frame_Shift_Del_p.A504fs	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	1013						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				GATGTCCTGGCCCCCCACGTG	0.632													26	51	---	---	---	---						.
SHMT1	6470	broad.mit.edu	37	17	18259316	18259317	+	Splice_Site	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:18259316_18259317insA	uc002gta.2	-	2	172	c.-18_splice	c.e2-1		SHMT1_uc002gtb.2_Splice_Site|SHMT1_uc010cqb.2_Splice_Site|SHMT1_uc010vxt.1_Splice_Site|SHMT1_uc002gtd.1_Splice_Site|SHMT1_uc010vxu.1_Splice_Site	NM_004169	NP_004160	P34896	GLYC_HUMAN	serine hydroxymethyltransferase 1 (soluble)						carnitine biosynthetic process|folic acid metabolic process|L-serine catabolic process|one-carbon metabolic process|purine base biosynthetic process	cytosol|nucleus	glycine hydroxymethyltransferase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)	1					Glycine(DB00145)|Mimosine(DB01055)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	CGAAGCTGCCTAAAAAAATGGG	0.337													9	19	---	---	---	---						.
KRT16	3868	broad.mit.edu	37	17	39768744	39768744	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:39768744delC	uc002hxg.3	-	1	336	c.197delG	c.(196-198)GGCfs	p.G66fs	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	66	Head.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCCATAGCCGCCCCCCAGCCC	0.488													4	6	---	---	---	---						.
SLC4A1	6521	broad.mit.edu	37	17	42337271	42337271	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr17:42337271delC	uc002igf.3	-	7	664	c.515delG	c.(514-516)GGTfs	p.G172fs	SLC4A1_uc002igg.3_Frame_Shift_Del_p.G172fs	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	172	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		AGGCTTCACACCCCCCAGGGC	0.602													38	85	---	---	---	---						.
SMCHD1	23347	broad.mit.edu	37	18	2706440	2706440	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr18:2706440delA	uc002klm.3	+	15	2224	c.2035delA	c.(2035-2037)AAAfs	p.K679fs	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	679					chromosome organization		ATP binding				0						GAAAGCTGTTAAAAAATATGT	0.353													8	6	---	---	---	---						.
DAPK3	1613	broad.mit.edu	37	19	3959269	3959271	+	In_Frame_Del	DEL	CCT	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:3959269_3959271delCCT	uc002lzc.1	-	8	1286_1288	c.1193_1195delAGG	c.(1192-1197)GAGGCC>GCC	p.E398del	DAPK3_uc002lzb.1_In_Frame_Del_p.E135del|DAPK3_uc002lzd.1_In_Frame_Del_p.E398del	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	398	Interaction with CDC5L (By similarity).				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCCCTTGGCCTCCTCCTGCGC	0.704													6	10	---	---	---	---						.
MAP2K7	5609	broad.mit.edu	37	19	7975006	7975006	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:7975006delG	uc002mit.2	+	3	390	c.325delG	c.(325-327)GGGfs	p.G109fs	MAP2K7_uc002miv.2_Frame_Shift_Del_p.G109fs|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_Frame_Shift_Del_p.G109fs|MAP2K7_uc010dvv.2_5'UTR	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	109					activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	CCTGACCATCGGGGGCCAGGT	0.667													11	21	---	---	---	---						.
AXL	558	broad.mit.edu	37	19	41743896	41743896	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr19:41743896delC	uc010ehj.2	+	7	1021	c.831delC	c.(829-831)GACfs	p.D277fs	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Frame_Shift_Del_p.D277fs|AXL_uc010ehk.2_Frame_Shift_Del_p.D277fs	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	277	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GAGAACCAGACCCCCCAGAGG	0.622													35	67	---	---	---	---						.
RAD51AP2	729475	broad.mit.edu	37	2	17698737	17698737	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:17698737delT	uc002rcl.1	-	1	970	c.946delA	c.(946-948)ACTfs	p.T316fs	RAD51AP2_uc010exn.1_Frame_Shift_Del_p.T307fs	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	316										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GCTTCTACAGTTTTTTTATCA	0.328													17	29	---	---	---	---						.
CLIP4	79745	broad.mit.edu	37	2	29379233	29379233	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:29379233delA	uc002rmv.2	+	10	1418	c.1179delA	c.(1177-1179)TCAfs	p.S393fs	CLIP4_uc002rmu.2_Frame_Shift_Del_p.S393fs|CLIP4_uc010ezm.1_Frame_Shift_Del_p.S393fs|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Frame_Shift_Del_p.S375fs	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	393										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAATGACATCAAAAAAAGATA	0.274													19	35	---	---	---	---						.
TET3	200424	broad.mit.edu	37	2	74275076	74275076	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:74275076delC	uc002skb.3	+	1	1627	c.1627delC	c.(1627-1629)CCCfs	p.P543fs	TET3_uc010fez.1_Frame_Shift_Del_p.P543fs	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	543							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CAGCCTGCTGCCCCCTACTCA	0.637													16	33	---	---	---	---						.
CAPN10	11132	broad.mit.edu	37	2	241533462	241533462	+	Frame_Shift_Del	DEL	G	-	-	rs150113284	byFrequency	TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr2:241533462delG	uc002vzk.1	+	5	1012	c.828delG	c.(826-828)GAGfs	p.E276fs	CAPN10_uc010zoh.1_Frame_Shift_Del_p.E276fs|CAPN10_uc002vzl.1_Frame_Shift_Del_p.E276fs|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Frame_Shift_Del_p.E148fs|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	276	Calpain catalytic.		E -> G (in a colorectal cancer sample; somatic mutation).		actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding	p.E276G(1)|p.E276fs*3(1)		ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		TCTGGAGAGAGGGGTGAGTGC	0.687													16	37	---	---	---	---						.
SNPH	9751	broad.mit.edu	37	20	1286385	1286386	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr20:1286385_1286386insC	uc002wes.2	+	6	1408_1409	c.1172_1173insC	c.(1171-1173)AACfs	p.N391fs	SNPH_uc002wet.2_Frame_Shift_Ins_p.N435fs	NM_014723	NP_055538	O15079	SNPH_HUMAN	syntaphilin	391					synaptic vesicle docking involved in exocytosis	cell junction|integral to membrane|synapse|synaptosome	syntaxin-1 binding			ovary(2)	2						CCTGGTGCCAACCCCAACCCTG	0.658													9	9	---	---	---	---						.
PLA1A	51365	broad.mit.edu	37	3	119316796	119316796	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:119316796delG	uc003ecu.2	+	1	75	c.36delG	c.(34-36)GTGfs	p.V12fs	PLA1A_uc003ecv.2_Frame_Shift_Del_p.V12fs|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_5'UTR	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	12					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GCTTCTGGGTGGGGGGCCTCA	0.512													4	5	---	---	---	---						.
POLQ	10721	broad.mit.edu	37	3	121207489	121207489	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:121207489delA	uc003eee.3	-	16	4418	c.4289delT	c.(4288-4290)TTAfs	p.L1430fs	POLQ_uc003eed.2_Frame_Shift_Del_p.L602fs	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1430					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		ATTCTTTTTTAAAAAAAGACC	0.338								DNA_polymerases_(catalytic_subunits)					10	17	---	---	---	---						.
DIRC2	84925	broad.mit.edu	37	3	122591386	122591386	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:122591386delT	uc003efw.3	+	8	1402	c.1263delT	c.(1261-1263)ACTfs	p.T421fs	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Frame_Shift_Del_p.T259fs	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	421	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GAGTTGTCACTTTTTTAAGTA	0.318													24	55	---	---	---	---						.
ZDHHC19	131540	broad.mit.edu	37	3	195925221	195925221	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr3:195925221delG	uc003fwc.2	-	7	989	c.875delC	c.(874-876)CCAfs	p.P292fs	ZDHHC19_uc010hzz.2_RNA|ZDHHC19_uc010iaa.2_RNA|ZDHHC19_uc010iab.2_Intron	NM_001039617	NP_001034706	Q8WVZ1	ZDH19_HUMAN	zinc finger, DHHC domain containing 19	292						integral to membrane	acyltransferase activity|zinc ion binding			ovary(3)	3	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.89e-25)|all cancers(36;1.46e-23)|OV - Ovarian serous cystadenocarcinoma(49;2.1e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0022)		GGTTGGGGCTGGGGGGTTGAG	0.627													26	53	---	---	---	---						.
LIMCH1	22998	broad.mit.edu	37	4	41621389	41621390	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:41621389_41621390delAG	uc003gvu.3	+	8	921_922	c.867_868delAG	c.(865-870)GCAGAGfs	p.A289fs	LIMCH1_uc003gvt.1_Frame_Shift_Del_p.A130fs|LIMCH1_uc003gvv.3_Frame_Shift_Del_p.A289fs|LIMCH1_uc003gvw.3_Frame_Shift_Del_p.A289fs|LIMCH1_uc003gvx.3_Frame_Shift_Del_p.A289fs|LIMCH1_uc003gwe.3_Frame_Shift_Del_p.A289fs|LIMCH1_uc003gvy.3_Frame_Shift_Del_p.A130fs|LIMCH1_uc003gwa.3_Frame_Shift_Del_p.A130fs|LIMCH1_uc003gvz.3_Frame_Shift_Del_p.A130fs|LIMCH1_uc011byu.1_Frame_Shift_Del_p.A135fs|LIMCH1_uc003gwc.3_Frame_Shift_Del_p.A135fs|LIMCH1_uc003gwd.3_Frame_Shift_Del_p.A135fs|LIMCH1_uc011byv.1_Frame_Shift_Del_p.A40fs|LIMCH1_uc003gwb.1_Frame_Shift_Del_p.A137fs	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	289_290					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AGAAGAAAGCAGAGAGAGAGGA	0.594													18	40	---	---	---	---						.
DDX60L	91351	broad.mit.edu	37	4	169341447	169341448	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:169341447_169341448insA	uc003irq.3	-	18	2699_2700	c.2478_2479insT	c.(2476-2481)TTTACAfs	p.F826fs	DDX60L_uc003irr.1_Frame_Shift_Ins_p.F826fs|DDX60L_uc003irs.1_Frame_Shift_Ins_p.F553fs	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	826_827	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TAATCTCTTGTAAAAGCACCGC	0.356													17	39	---	---	---	---						.
FAM149A	25854	broad.mit.edu	37	4	187077174	187077174	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr4:187077174delA	uc003iyt.3	+	7	983	c.404delA	c.(403-405)CAAfs	p.Q135fs	FAM149A_uc011cla.1_Frame_Shift_Del_p.Q135fs|FAM149A_uc010isj.2_Frame_Shift_Del_p.Q135fs|FAM149A_uc010isk.2_RNA|FAM149A_uc003iyu.3_Frame_Shift_Del_p.Q135fs|FAM149A_uc010isl.2_Frame_Shift_Del_p.Q135fs|FAM149A_uc011clb.1_Frame_Shift_Del_p.Q135fs	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	426										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		TGTCTTGAACAAAAACCAGCT	0.418													20	44	---	---	---	---						.
FCHO2	115548	broad.mit.edu	37	5	72264329	72264329	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr5:72264329delA	uc003kcl.2	+	2	154	c.38delA	c.(37-39)GAAfs	p.E13fs	FCHO2_uc011csl.1_Frame_Shift_Del_p.E13fs|FCHO2_uc011csk.1_Frame_Shift_Del_p.E13fs	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	13	FCH.									ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		TTTTAGGGGGAAAAAAATAGT	0.289													3	5	---	---	---	---						.
GPSM3	63940	broad.mit.edu	37	6	32159189	32159189	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:32159189delC	uc003oay.3	-	4	830	c.437delG	c.(436-438)GGTfs	p.G146fs	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Frame_Shift_Del_p.G123fs|GPSM3_uc003oaz.2_Frame_Shift_Del_p.G146fs	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	146	GoLoco 3.				signal transduction	cytoplasm	GTPase activator activity|protein binding				0						CTCCATTCGACCCCCACCCTG	0.652													51	118	---	---	---	---						.
CDC5L	988	broad.mit.edu	37	6	44374080	44374081	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:44374080_44374081insA	uc003oxl.2	+	7	1038_1039	c.779_780insA	c.(778-780)AGAfs	p.R260fs		NM_001253	NP_001244	Q99459	CDC5L_HUMAN	CDC5-like	260	Interaction with PPP1R8.				cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|cytoplasm|nuclear speck|nucleolus	DNA binding|RNA binding			lung(3)|ovary(1)|kidney(1)|skin(1)	6	all_lung(25;0.00433)|Ovarian(13;0.0273)|all_hematologic(164;0.208)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GGAAGAGATAGAAAAAAAGACA	0.297													20	33	---	---	---	---						.
MOXD1	26002	broad.mit.edu	37	6	132722507	132722507	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr6:132722507delC	uc003qdf.2	-	1	158	c.59delG	c.(58-60)GGCfs	p.G20fs		NM_015529	NP_056344	Q6UVY6	MOXD1_HUMAN	monooxygenase, DBH-like 1 isoform 2	20	Lumenal (Potential).				catecholamine metabolic process	endoplasmic reticulum membrane|integral to membrane	copper ion binding|dopamine beta-monooxygenase activity			ovary(1)	1	Breast(56;0.0495)			OV - Ovarian serous cystadenocarcinoma(155;0.0132)|GBM - Glioblastoma multiforme(226;0.0191)		TCGGCCCGAGCCCCCCGCCGC	0.746													4	2	---	---	---	---						.
C9orf44	158314	broad.mit.edu	37	9	94903792	94903793	+	RNA	INS	-	C	C			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:94903792_94903793insC	uc004arp.1	+	1		c.44_45insC				NR_027341				Homo sapiens cDNA FLJ13600 fis, clone PLACE1009947.												0						CGCCGGCTGCGCCCCCCAGCCC	0.752													5	6	---	---	---	---						.
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900483	112900483	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-7707-01A-11D-2053-08	TCGA-BR-7707-10A-01D-2053-08									Somatic	Phase_I	Capture				Illumina GAIIx	fff6694b-3619-4051-a868-c1fc86d59ce4	56b185dd-0b23-4ebb-8961-0f7538a940ab	g.chr9:112900483delC	uc004bei.2	+	9	3547	c.3355delC	c.(3355-3357)CCCfs	p.P1119fs	PALM2-AKAP2_uc004bek.3_Frame_Shift_Del_p.P887fs|PALM2-AKAP2_uc004bej.3_Frame_Shift_Del_p.P887fs|PALM2-AKAP2_uc004bel.1_Frame_Shift_Del_p.P697fs|AKAP2_uc011lwi.1_Frame_Shift_Del_p.P745fs|AKAP2_uc004bem.2_Frame_Shift_Del_p.P745fs|PALM2-AKAP2_uc010mtw.1_Frame_Shift_Del_p.P705fs|AKAP2_uc011lwj.1_Frame_Shift_Del_p.P656fs|PALM2-AKAP2_uc004ben.2_Frame_Shift_Del_p.P656fs	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	656							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						GGAAAGGGGGCCCCCCCAGCC	0.562													7	14	---	---	---	---						.
