Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
KAZ	23254	broad.mit.edu	37	1	15386779	15386779	+	Missense_Mutation	SNP	G	A	A	rs147538261		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:15386779G>A	uc001avm.3	+	6	1309	c.1028G>A	c.(1027-1029)CGG>CAG	p.R343Q	KAZ_uc009vog.1_Missense_Mutation_p.R343Q|KAZ_uc010obj.1_Missense_Mutation_p.R343Q|KAZ_uc001avo.2_Missense_Mutation_p.R337Q|KAZ_uc001avp.2_Missense_Mutation_p.R249Q|KAZ_uc001avq.2_Missense_Mutation_p.R249Q|KAZ_uc001avr.2_Missense_Mutation_p.R246Q	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	343					keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						CCTCGACACCGGACACACTCC	0.692000													20	151					0	0	0.012319	0	0	
MAP3K6	9064	broad.mit.edu	37	1	27689455	27689455	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:27689455C>T	uc001bny.1	-	7	1278	c.1029G>A	c.(1027-1029)CAG>CAA	p.Q343Q	MAP3K6_uc009vsw.1_Silent_p.Q335Q|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	343					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AGCCCTCAAGCTGTACCAGCG	0.632000													8	46					0	0	0.008291	0	0	
CSMD2	114784	broad.mit.edu	37	1	34049315	34049315	+	Silent	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:34049315G>C	uc001bxn.1	-	48	7202	c.7173C>G	c.(7171-7173)CCC>CCG	p.P2391P	CSMD2_uc001bxm.1_Silent_p.P2389P	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2391	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGTTATAGTCGGGCTCCACTC	0.502000													14	126					0	0	0.001855	0	0	
MACF1	23499	broad.mit.edu	37	1	39797109	39797109	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:39797109G>C	uc010oiu.1	+	1	300	c.169G>C	c.(169-171)GAT>CAT	p.D57H	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1622					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GGAGCTACAGGATGCCCTGGC	0.507000													13	104					0	0	0.001855	0	0	
TIE1	7075	broad.mit.edu	37	1	43774661	43774661	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:43774661G>T	uc001ciu.2	+	8	1126	c.1047G>T	c.(1045-1047)CGG>CGT	p.R349R	TIE1_uc010okd.1_Silent_p.R349R|TIE1_uc010oke.1_Silent_p.R304R|TIE1_uc009vwq.2_Silent_p.R305R|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'UTR|TIE1_uc010okc.1_Intron	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	349	Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CCCCAGACCGGATCCCCCAGA	0.592000													5	61					0.00198382	0.00206512	0.001984	1	0	
TIE1	7075	broad.mit.edu	37	1	43783012	43783012	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:43783012G>T	uc001ciu.2	+	15	2631	c.2552G>T	c.(2551-2553)GGC>GTC	p.G851V	TIE1_uc010oke.1_Missense_Mutation_p.G806V|TIE1_uc009vwq.2_Missense_Mutation_p.G807V|TIE1_uc010okg.1_Missense_Mutation_p.G496V	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	851	ATP (By similarity).|Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGGAACTTCGGCCAGGTCATC	0.612000													6	75					1.06961e-07	1.22104e-07	0.003080	1	0	
MAST2	23139	broad.mit.edu	37	1	46495141	46495141	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:46495141A>C	uc001cov.2	+	19	2505	c.2222A>C	c.(2221-2223)GAG>GCG	p.E741A	MAST2_uc001cow.2_Missense_Mutation_p.E741A|MAST2_uc001coy.1_Missense_Mutation_p.E415A|MAST2_uc001coz.1_Missense_Mutation_p.E626A|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	741	Protein kinase.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					ACTTCAGATGAGATTGTGTGG	0.547000													5	35					0	0	0.000602	0	0	
PODN	127435	broad.mit.edu	37	1	53542984	53542984	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:53542984A>T	uc001cuv.2	+	6	855	c.848A>T	c.(847-849)CAC>CTC	p.H283L	PODN_uc001cuw.2_Missense_Mutation_p.H264L|PODN_uc010onr.1_Missense_Mutation_p.H264L|PODN_uc010ons.1_Intron	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	235	LRR 6.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						GTGCCCAAGCACCTGCCGCCT	0.662000													9	119					0	0	0.004482	0	0	
LRRC7	57554	broad.mit.edu	37	1	70303923	70303923	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:70303923C>T	uc001dep.2	+	5	520	c.490C>T	c.(490-492)CGG>TGG	p.R164W	LRRC7_uc001deo.1_Missense_Mutation_p.R202W|LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	164	LRR 7.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						TGTCAAATTGCGGATCTTGGA	0.244000													5	51					0	0	0.001168	0	0	
LRRC8B	23507	broad.mit.edu	37	1	90058373	90058373	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:90058373A>G	uc001dni.2	+	8	2690	c.2183A>G	c.(2182-2184)CAG>CGG	p.Q728R	LRRC8B_uc001dnh.2_Missense_Mutation_p.Q728R|LRRC8B_uc001dnj.2_Missense_Mutation_p.Q728R	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	728	LRR 12.					integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		AAAAAGCTGCAGTGTTTACTT	0.413000													9	99					0	0	0.004482	0	0	
RTCD1	8634	broad.mit.edu	37	1	100741243	100741243	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:100741243C>T	uc001dtc.2	+	7	922	c.704C>T	c.(703-705)CCT>CTT	p.P235L	RTCD1_uc001dtd.2_Missense_Mutation_p.P248L	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	235					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		GTTCAAGAACCTAAAGACCAA	0.363000													8	80					0	0	0.004482	0	0	
GPSM2	29899	broad.mit.edu	37	1	109465061	109465061	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:109465061G>C	uc010ovc.1	+	13	1959	c.1463G>C	c.(1462-1464)GGA>GCA	p.G488A	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Missense_Mutation_p.G488A|GPSM2_uc010ove.1_Missense_Mutation_p.G488A	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	488					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		GATACTATTGGAGATGAAGGG	0.338000													10	103					0	0	0.008291	0	0	
KCND3	3752	broad.mit.edu	37	1	112525166	112525166	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:112525166G>C	uc001ebu.1	-	2	663	c.183C>G	c.(181-183)TAC>TAG	p.Y61*	KCND3_uc001ebv.1_Nonsense_Mutation_p.Y61*	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	61	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGGTGTCCGGGTAGCGCTCCA	0.632000													7	69					0	0	0.004482	0	0	
PDZK1	5174	broad.mit.edu	37	1	145747082	145747082	+	Silent	SNP	C	G	G	rs150154026		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:145747082C>G	uc001eon.1	+	3	136	c.39C>G	c.(37-39)TCC>TCG	p.S13S	NBPF10_uc001emp.3_Intron|PDZK1_uc001eoo.1_Silent_p.S13S|PDZK1_uc010oza.1_Silent_p.S13S	NM_002614	NP_002605	Q5T2W1	NHRF3_HUMAN	PDZ domain containing 1	13	PDZ 1.				carnitine transport|cell proliferation|drug transport|positive regulation of ion transmembrane transport	brush border membrane|cytoplasm	PDZ domain binding|transporter activity				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			GTAAACTGTCCAAGCAAGAAG	0.453000													12	208					0	0	0.001855	0	0	
THEM5	284486	broad.mit.edu	37	1	151820670	151820670	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:151820670A>T	uc009wnd.2	-	4	695	c.563T>A	c.(562-564)ATC>AAC	p.I188N		NM_182578	NP_872384	Q8N1Q8	THEM5_HUMAN	thioesterase superfamily member 5	188							hydrolase activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TTTGAACCTGATGTTGAGACT	0.552000													39	119					0	0	0.006230	0	0	
ADAM15	8751	broad.mit.edu	37	1	155034398	155034398	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:155034398C>T	uc001fgr.1	+	21	2472	c.2371C>T	c.(2371-2373)CCC>TCC	p.P791S	EFNA3_uc010pew.1_5'Flank|ADAM15_uc001fgq.1_Missense_Mutation_p.P475S|ADAM15_uc001fgt.1_Missense_Mutation_p.P790S|ADAM15_uc010pev.1_Intron|ADAM15_uc001fgs.1_Intron|ADAM15_uc001fgu.1_Missense_Mutation_p.P766S|ADAM15_uc001fgw.1_Intron|ADAM15_uc001fgv.1_Intron|ADAM15_uc001fgx.1_Intron|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_Intron|EFNA4_uc001fhc.2_5'Flank|EFNA4_uc001fhd.2_5'Flank|EFNA4_uc001fhe.2_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	791	Cytoplasmic (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			GGCTGACCGACCCAATCCCCC	0.647000											OREG0013848	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	194					0	0	0.013537	0	0	
ASH1L	55870	broad.mit.edu	37	1	155490999	155490999	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:155490999C>T	uc009wqq.2	-	2	792	c.312G>A	c.(310-312)GAG>GAA	p.E104E	ASH1L_uc001fkt.2_Silent_p.E104E|ASH1L_uc009wqr.1_Silent_p.E104E	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	104					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			ATACATAGTTCTCCAAGTTCT	0.363000													24	288					0	0	0.003330	0	0	
KIAA0907	22889	broad.mit.edu	37	1	155895441	155895441	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:155895441G>C	uc001fmi.1	-	7	899	c.875C>G	c.(874-876)CCT>CGT	p.P292R	KIAA0907_uc001fmj.1_Missense_Mutation_p.P292R|KIAA0907_uc009wrk.1_Intron|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.P292R|KIAA0907_uc001fmm.2_3'UTR	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	292											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			AATATACATAGGTTCAAAAGC	0.463000													14	137					0	0	0.006122	0	0	
ARHGEF2	9181	broad.mit.edu	37	1	155935499	155935499	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:155935499C>T	uc001fmt.2	-	5	511	c.393G>A	c.(391-393)CGG>CGA	p.R131R	ARHGEF2_uc001fmr.2_Silent_p.R104R|ARHGEF2_uc001fms.2_Silent_p.R131R|ARHGEF2_uc001fmu.2_Silent_p.R176R|ARHGEF2_uc010pgt.1_Silent_p.R104R|ARHGEF2_uc010pgu.1_Silent_p.R176R	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	131					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					GGAGGGACTGCCGGAAGCTGT	0.612000													9	46					0	0	0.006214	0	0	
FCRL3	115352	broad.mit.edu	37	1	157667565	157667565	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:157667565T>C	uc001frb.2	-	5	735	c.443A>G	c.(442-444)AAG>AGG	p.K148R	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.K148R|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.K148R	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	148	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CACTGTGATCTTCTCTAAATT	0.343000													18	172					0	0	0.012319	0	0	
OR10K1	391109	broad.mit.edu	37	1	158435864	158435864	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:158435864C>A	uc010pij.1	+	1	513	c.513C>A	c.(511-513)TCC>TCA	p.S171S		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCCACTCCTCCAACCAGCTCC	0.527000													18	316					1.56452e-12	1.86568e-12	0.007413	1	0	
SPTA1	6708	broad.mit.edu	37	1	158581078	158581078	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:158581078G>T	uc001fst.1	-	52	7435	c.7236C>A	c.(7234-7236)TTC>TTA	p.F2412L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2412				GRSHLSGYDYVGFTNSYFGN -> VEAISLAMTTLASPIPT LATNKQLLVDRRKS (in Ref. 1; AAA60577/ AAA60994).	actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGGAATTGGTGAAGCCAACGT	0.483000													9	77					2.74318e-10	3.22578e-10	0.006214	1	0	
POU2F1	5451	broad.mit.edu	37	1	167334762	167334762	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:167334762C>G	uc001gec.2	+	4	279	c.117C>G	c.(115-117)ATC>ATG	p.I39M	POU2F1_uc010plg.1_RNA|POU2F1_uc001ged.2_Missense_Mutation_p.I37M|POU2F1_uc001gee.2_Missense_Mutation_p.I39M|POU2F1_uc010plh.1_Missense_Mutation_p.I39M|POU2F1_uc001gef.2_Missense_Mutation_p.I51M	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	39					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						GAGGAGCAATCTCAACAGCCC	0.448000													7	64					0	0	0.001984	0	0	
TIPRL	261726	broad.mit.edu	37	1	168165873	168165873	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:168165873A>C	uc001gfg.2	+	5	750	c.605A>C	c.(604-606)TAC>TCC	p.Y202S	TIPRL_uc001gfh.2_Missense_Mutation_p.Y202S	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	202	Interaction with PPP2CA.				DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					ACGAGACTTTACCATGAGGTA	0.328000													6	57					0	0	0.001984	0	0	
NME7	29922	broad.mit.edu	37	1	169267893	169267893	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:169267893C>T	uc001gfu.2	-	6	787	c.549G>A	c.(547-549)GTG>GTA	p.V183V	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Silent_p.V147V|NME7_uc001gfv.1_Silent_p.V183V	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	183					CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					CTGTGCGTGCCACTCCAGAGT	0.458000													7	63					0	0	0.003080	0	0	
F5	2153	broad.mit.edu	37	1	169511612	169511612	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:169511612G>A	uc001ggg.1	-	13	2861	c.2716C>T	c.(2716-2718)CCC>TCC	p.P906S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	906	2 X 17 AA tandem repeats.|1-1.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCCTCCCAGGGCCTCATTCCG	0.488000													21	166					0	0	0.012319	0	0	
SELP	6403	broad.mit.edu	37	1	169580849	169580849	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:169580849G>T	uc001ggi.3	-	7	1093	c.1028C>A	c.(1027-1029)GCT>GAT	p.A343D	SELP_uc001ggh.2_Missense_Mutation_p.A178D|SELP_uc009wvr.2_Missense_Mutation_p.A343D	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	343	Sushi 3.|Extracellular (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	ATAGGCAAAAGCAGTGAGCGG	0.527000													15	90					1.52009e-12	1.81696e-12	0.003163	1	0	
FASLG	356	broad.mit.edu	37	1	172635113	172635113	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:172635113A>T	uc001gis.2	+	4	960	c.803A>T	c.(802-804)AAT>ATT	p.N268I	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	268	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TCTCTGGTCAATTTTGAGGAA	0.448000													10	85					0	0	0.006214	0	0	
TNN	63923	broad.mit.edu	37	1	175087841	175087841	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:175087841G>T	uc001gkl.1	+	11	2644	c.2531G>T	c.(2530-2532)GGG>GTG	p.G844V		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	844	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GTTCCAGTGGGGAAGGAGCAG	0.617000													5	62					3.59834e-05	3.97381e-05	0.001168	1	0	
MR1	3140	broad.mit.edu	37	1	181022743	181022743	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:181022743C>G	uc001goq.1	+	5	920	c.915C>G	c.(913-915)GTC>GTG	p.V305V	MR1_uc001gor.1_Silent_p.V260V|MR1_uc001gos.1_Silent_p.V213V|MR1_uc010pns.1_Intron	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	305	Helical; (Potential).				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						TGAAAGCTGTCTCTGGGTCCA	0.493000													7	62					0	0	0.003080	0	0	
PTGS2	5743	broad.mit.edu	37	1	186645623	186645623	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:186645623G>A	uc001gsb.2	-	7	1083	c.946C>T	c.(946-948)CAG>TAG	p.Q316*	PTGS2_uc009wyo.2_Nonsense_Mutation_p.Q163*	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	316					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CTGCTTGTCTGGAACAACTGC	0.418000													12	123					0	0	0.010729	0	0	
FAM5C	339479	broad.mit.edu	37	1	190195232	190195232	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:190195232T>C	uc001gse.1	-	6	1173	c.941A>G	c.(940-942)AAC>AGC	p.N314S	FAM5C_uc010pot.1_Missense_Mutation_p.N212S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	314						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAAGTCACTGTTGTAAGCTTT	0.353000													10	45					0	0	0.008291	0	0	
RGS18	64407	broad.mit.edu	37	1	192127852	192127852	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:192127852G>A	uc001gsg.2	+	1	261	c.85G>A	c.(85-87)GGA>AGA	p.G29R		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	29					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						ACATGGTTCAGGAAAAGAAGA	0.279000													13	52					0	0	0.001855	0	0	
CAMSAP1L1	23271	broad.mit.edu	37	1	200819236	200819236	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:200819236T>G	uc001gvl.2	+	12	3642	c.3372T>G	c.(3370-3372)ATT>ATG	p.I1124M	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.I1113M|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.I1097M	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1124						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TTAATCTGATTGAAGTTTCCC	0.413000													29	114					0	0	0.007291	0	0	
CENPF	1063	broad.mit.edu	37	1	214795534	214795534	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:214795534A>T	uc001hkm.2	+	7	1152	c.978A>T	c.(976-978)AAA>AAT	p.K326N		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	326	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGAAAGCAAAAGTGGAATTAA	0.388000													8	48					0	0	0.003080	0	0	
USH2A	7399	broad.mit.edu	37	1	215848522	215848522	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:215848522T>C	uc001hku.1	-	63	13118	c.12731A>G	c.(12730-12732)AAT>AGT	p.N4244S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4244	Extracellular (Potential).|Fibronectin type-III 27.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCCAGCTGAATTCCAAGTGTA	0.318000										HNSCC(13;0.011)			9	63					0	0	0.004482	0	0	
ESRRG	2104	broad.mit.edu	37	1	216680463	216680463	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:216680463G>A	uc001hkw.1	-	7	1361	c.1195C>T	c.(1195-1197)CTG>TTG	p.L399L	ESRRG_uc001hky.1_Silent_p.L376L|ESRRG_uc009xdp.1_Silent_p.L376L|ESRRG_uc001hkz.1_Silent_p.L337L|ESRRG_uc010puc.1_Silent_p.L376L|ESRRG_uc001hla.1_Silent_p.L376L|ESRRG_uc001hlb.1_Silent_p.L376L|ESRRG_uc010pud.1_Silent_p.L207L|ESRRG_uc001hlc.1_Silent_p.L376L|ESRRG_uc001hld.1_Silent_p.L376L|ESRRG_uc001hkx.1_Silent_p.L411L|ESRRG_uc009xdo.1_Silent_p.L376L	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	399					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TAATCCTGCAGCGCTTCATGT	0.478000													17	102					0	0	0.007413	0	0	
URB2	9816	broad.mit.edu	37	1	229772997	229772997	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:229772997G>A	uc001hts.1	+	4	2773	c.2637G>A	c.(2635-2637)AAG>AAA	p.K879K	URB2_uc009xfd.1_Silent_p.K879K	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	879						nucleolus				central_nervous_system(2)|ovary(1)	3						CCCTGGTCAAGAGTGACTTCC	0.502000													16	119					0	0	0.003163	0	0	
LYST	1130	broad.mit.edu	37	1	235976313	235976313	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:235976313G>C	uc001hxj.2	-	4	416	c.241C>G	c.(241-243)CCA>GCA	p.P81A	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.P81A	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	81					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CATACCAGTGGAAGGAGAGAC	0.378000									Chediak-Higashi_syndrome				4	40					0	0	0.000602	0	0	
OPN3	23596	broad.mit.edu	37	1	241761205	241761205	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:241761205G>A	uc001hza.2	-	3	933	c.788C>T	c.(787-789)ACC>ATC	p.T263I	OPN3_uc001hzb.2_RNA|OPN3_uc001hzc.2_RNA	NM_014322	NP_055137	Q9H1Y3	OPN3_HUMAN	opsin 3	263	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|visual perception	integral to plasma membrane	G-protein coupled photoreceptor activity				0	Ovarian(103;0.103)|all_lung(81;0.23)	all_cancers(173;0.0231)	OV - Ovarian serous cystadenocarcinoma(106;0.0125)			GACCAGGAAGGTGAATATCAT	0.393000													23	92					0	0	0.014323	0	0	
PGBD2	267002	broad.mit.edu	37	1	249212076	249212076	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr1:249212076G>T	uc001ifh.2	+	3	1440	c.1293G>T	c.(1291-1293)GTG>GTT	p.V431V	PGBD2_uc001ifg.2_Silent_p.V180V|PGBD2_uc009xhd.2_Silent_p.V428V	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	431										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TAGAGCCAGTGAGGCTGACCA	0.542000													7	67					8.12818e-05	8.84179e-05	0.001984	1	0	
OPTN	10133	broad.mit.edu	37	10	13154606	13154606	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:13154606G>C	uc001ilu.1	+	6	961	c.523G>C	c.(523-525)GAA>CAA	p.E175Q	OPTN_uc001ilv.1_Missense_Mutation_p.E175Q|OPTN_uc001ilw.1_Missense_Mutation_p.E175Q|OPTN_uc001ilx.1_Missense_Mutation_p.E175Q|OPTN_uc001ily.1_Missense_Mutation_p.E175Q|OPTN_uc010qbr.1_Missense_Mutation_p.E118Q|OPTN_uc001ilz.1_Missense_Mutation_p.E175Q	NM_001008213	NP_001008214	Q96CV9	OPTN_HUMAN	optineurin	175	Interaction with Rab8.				cell death|Golgi ribbon formation|Golgi to plasma membrane protein transport|protein targeting to Golgi|signal transduction	perinuclear region of cytoplasm|trans-Golgi network	protein C-terminus binding			ovary(2)	2						CGGCTCCTCAGAAGATTCCTT	0.468000													8	97					0	0	0.004482	0	0	
PTER	9317	broad.mit.edu	37	10	16553049	16553049	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:16553049C>T	uc001iog.1	+	6	1051	c.844C>T	c.(844-846)CGT>TGT	p.R282C	PTER_uc001ioh.1_Missense_Mutation_p.R282C|PTER_uc001ioi.1_Missense_Mutation_p.R282C|PTER_uc009xjp.1_Missense_Mutation_p.R235C	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	282					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						TCACAGGGTGCGTCTCCTGGT	0.413000													5	16					0	0	0.000602	0	0	
VIM	7431	broad.mit.edu	37	10	17277193	17277193	+	Missense_Mutation	SNP	G	A	A	rs116370722	by1000genomes	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:17277193G>A	uc001iou.2	+	7	1447	c.1034G>A	c.(1033-1035)CGT>CAT	p.R345H	VIM_uc001iov.1_Missense_Mutation_p.R345H|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Missense_Mutation_p.R345H|VIM_uc001ioy.1_Intron|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Missense_Mutation_p.R303H|VIM_uc001ipc.1_Missense_Mutation_p.R345H	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	345	Rod.|Coil 2.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						CGCCAGATGCGTGAAATGGAA	0.478000													8	58					0	0	0.004482	0	0	
ARHGAP21	57584	broad.mit.edu	37	10	24874802	24874802	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:24874802G>A	uc001isb.2	-	26	4903	c.4416C>T	c.(4414-4416)ATC>ATT	p.I1472I	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1471					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						CTTTGGCAATGATGATCTTCT	0.398000													24	175					0	0	0.002780	0	0	
GDF10	2662	broad.mit.edu	37	10	48438481	48438481	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:48438481A>G	uc001jfb.2	-	1	686	c.230T>C	c.(229-231)GTC>GCC	p.V77A	GDF10_uc009xnp.2_Missense_Mutation_p.V77A|GDF10_uc009xnq.1_Missense_Mutation_p.V77A	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	77					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GTGCATGTGGACAGCGACCAT	0.721000													4	2					0	0	0.000602	0	0	
Unknown	0	broad.mit.edu	37	10	49218563	49218563	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:49218563G>A	uc001jgd.2	-	8	1735	c.1576C>T	c.(1576-1578)CGC>TGC	p.R526C	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		TGGATCCAGCGTTCCTTCTCT	0.547000													6	29					0	0	0.010729	0	0	
CHAT	1103	broad.mit.edu	37	10	50872977	50872977	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:50872977T>C	uc001jhz.2	+	15	2285	c.2132T>C	c.(2131-2133)GTG>GCG	p.V711A	CHAT_uc001jhv.1_Missense_Mutation_p.V593A|CHAT_uc001jhx.1_Missense_Mutation_p.V593A|CHAT_uc001jhy.1_Missense_Mutation_p.V593A|CHAT_uc001jia.2_Missense_Mutation_p.V593A|CHAT_uc010qgs.1_Intron	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	711					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	GCAAAAGCTGTGGAAGAAAGC	0.512000													20	166					0	0	0.007413	0	0	
PCDH15	65217	broad.mit.edu	37	10	55955580	55955580	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:55955580T>A	uc001jju.1	-	11	1563	c.1168A>T	c.(1168-1170)AAT>TAT	p.N390Y	PCDH15_uc010qhq.1_Missense_Mutation_p.N395Y|PCDH15_uc010qhr.1_Missense_Mutation_p.N390Y|PCDH15_uc010qhs.1_Missense_Mutation_p.N395Y|PCDH15_uc010qht.1_Missense_Mutation_p.N390Y|PCDH15_uc010qhu.1_Missense_Mutation_p.N390Y|PCDH15_uc001jjv.1_Missense_Mutation_p.N368Y|PCDH15_uc010qhv.1_Missense_Mutation_p.N390Y|PCDH15_uc010qhw.1_Missense_Mutation_p.N353Y|PCDH15_uc010qhx.1_Missense_Mutation_p.N390Y|PCDH15_uc010qhy.1_Missense_Mutation_p.N395Y|PCDH15_uc010qhz.1_Missense_Mutation_p.N390Y|PCDH15_uc010qia.1_Missense_Mutation_p.N368Y|PCDH15_uc010qib.1_Missense_Mutation_p.N368Y|PCDH15_uc001jjw.2_Missense_Mutation_p.N390Y	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	390	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GGACTTTGATTGTTTTCATCC	0.398000										HNSCC(58;0.16)			9	64					0	0	0.006214	0	0	
TMEM26	219623	broad.mit.edu	37	10	63170177	63170177	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:63170177G>A	uc001jlo.2	-	6	1379	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	337						integral to membrane					0	Prostate(12;0.0112)					CCGCTGAGAGGGCCCACTCTC	0.592000													5	74					0	0	0.001168	0	0	
CCAR1	55749	broad.mit.edu	37	10	70507010	70507010	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:70507010G>A	uc001joo.2	+	7	730	c.611G>A	c.(610-612)AGA>AAA	p.R204K	CCAR1_uc001jol.1_RNA|CCAR1_uc001jom.1_Missense_Mutation_p.R9K|CCAR1_uc009xpx.1_Missense_Mutation_p.R178K|CCAR1_uc001jon.1_Missense_Mutation_p.R150K|CCAR1_uc010qiz.1_Missense_Mutation_p.R189K|CCAR1_uc010qja.1_Missense_Mutation_p.R189K|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	204					apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						AATGCACAGAGAATTCAAACA	0.338000													5	59					0	0	0.000602	0	0	
OPN4	94233	broad.mit.edu	37	10	88419067	88419067	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:88419067C>T	uc001kdq.2	+	5	869	c.642C>T	c.(640-642)CCC>CCT	p.P214P	OPN4_uc001kdp.2_Silent_p.P225P|OPN4_uc010qmk.1_Silent_p.P225P|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	214	Extracellular (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						CCTACGTGCCCGAGGGGTTGC	0.622000													5	60					0	0	0.001168	0	0	
TM9SF3	56889	broad.mit.edu	37	10	98325076	98325076	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:98325076C>T	uc001kmm.3	-	3	623	c.406G>A	c.(406-408)GAT>AAT	p.D136N	TM9SF3_uc010qot.1_Missense_Mutation_p.D136N	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	136						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		ATTGGTAAATCATCTATGTAC	0.308000													16	134					0	0	0.006122	0	0	
PKD2L1	9033	broad.mit.edu	37	10	102056924	102056924	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:102056924G>A	uc001kqx.1	-	6	1381	c.998C>T	c.(997-999)TCC>TTC	p.S333F	PKD2L1_uc009xwm.1_Missense_Mutation_p.S286F	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	333	Helical; (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		GATTTGCCAGGATGGGATGGC	0.557000													8	86					0	0	0.003080	0	0	
SEMA4G	57715	broad.mit.edu	37	10	102739929	102739929	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:102739929G>A	uc010qpt.1	+	11	1622	c.1179G>A	c.(1177-1179)TTG>TTA	p.L393L	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Silent_p.L393L|SEMA4G_uc001krx.2_Silent_p.L393L|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	393	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		CCCAAGACTTGCCATCCCTGG	0.587000													6	48					0	0	0.001984	0	0	
ADRA2A	150	broad.mit.edu	37	10	112838907	112838907	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:112838907A>C	uc001kzo.2	+	1	2118	c.1153A>C	c.(1153-1155)AAG>CAG	p.K385Q		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	370	Cytoplasmic (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	GAACCGCGAGAAGCGCTTCAC	0.667000													6	58					0	0	0.001168	0	0	
TCF7L2	6934	broad.mit.edu	37	10	114799863	114799863	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:114799863C>A	uc001lae.3	+	5	1037	c.530C>A	c.(529-531)TCC>TAC	p.S177Y	TCF7L2_uc001lac.3_Missense_Mutation_p.S154Y|TCF7L2_uc010qrk.1_Missense_Mutation_p.S154Y|TCF7L2_uc010qrl.1_Missense_Mutation_p.S154Y|TCF7L2_uc010qrm.1_Missense_Mutation_p.S177Y|TCF7L2_uc010qrn.1_Intron|TCF7L2_uc001lad.3_Missense_Mutation_p.S154Y|TCF7L2_uc001lag.3_Missense_Mutation_p.S154Y|TCF7L2_uc001laf.3_Missense_Mutation_p.S154Y|TCF7L2_uc010qro.1_Missense_Mutation_p.S154Y|TCF7L2_uc001lah.2_Missense_Mutation_p.S154Y|TCF7L2_uc010qrp.1_Missense_Mutation_p.S154Y|TCF7L2_uc010qrq.1_Missense_Mutation_p.S154Y|TCF7L2_uc010qrr.1_Missense_Mutation_p.S48Y|TCF7L2_uc010qrs.1_Missense_Mutation_p.S48Y|TCF7L2_uc010qrt.1_Missense_Mutation_p.S48Y|TCF7L2_uc010qru.1_Missense_Mutation_p.S24Y	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	177					anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GATGCCCGGTCCCCATCACCG	0.498000													14	47					4.14922e-12	4.93631e-12	0.004007	1	0	
GFRA1	2674	broad.mit.edu	37	10	117884837	117884837	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:117884837G>T	uc001lcj.2	-	6	1363	c.665C>A	c.(664-666)ACA>AAA	p.T222K	GFRA1_uc001lci.2_Missense_Mutation_p.T217K|GFRA1_uc009xyr.2_Missense_Mutation_p.T217K	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	222	2.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity	p.Q222P(1)		ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		CCTCCGCTCTGTGCAGGCGAT	0.577000													18	42					4.75885e-15	5.72866e-15	0.004990	1	0	
BTBD16	118663	broad.mit.edu	37	10	124036316	124036316	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:124036316G>A	uc001lgc.1	+	3	280	c.29G>A	c.(28-30)CGG>CAG	p.R10Q	BTBD16_uc001lgd.1_Missense_Mutation_p.R9Q	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	10										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				CACAAAGCTCGGCTGGAACGC	0.473000													8	73					0	0	0.003080	0	0	
C10orf137	26098	broad.mit.edu	37	10	127418920	127418920	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr10:127418920C>T	uc001liq.1	+	9	1373	c.1080C>T	c.(1078-1080)TGC>TGT	p.C360C	C10orf137_uc001lin.2_Silent_p.C326C|C10orf137_uc001lio.1_Silent_p.C326C|C10orf137_uc001lip.1_Silent_p.C64C	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	360					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				ACTTGATATGCAATGTGCCAG	0.328000													11	118					0	0	0.001855	0	0	
RRM1	6240	broad.mit.edu	37	11	4156468	4156468	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:4156468C>G	uc001lyw.3	+	18	2477	c.2158C>G	c.(2158-2160)CTC>GTC	p.L720V	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Missense_Mutation_p.L680V|RRM1_uc010qyc.1_Missense_Mutation_p.L623V|RRM1_uc010qyd.1_Missense_Mutation_p.L382V	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	720					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	CTATGGCAAACTCACTAGTAT	0.413000													6	54					0	0	0.001984	0	0	
OR56B1	387748	broad.mit.edu	37	11	5757906	5757906	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:5757906A>T	uc001mbt.1	+	1	160	c.160A>T	c.(160-162)ATC>TTC	p.I54F	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron|OR56B1_uc001mbs.1_Missense_Mutation_p.I54F|OR56B1_uc009yev.1_Missense_Mutation_p.I54F	NM_001005180	NP_001005180	Q8NGI3	O56B1_HUMAN	olfactory receptor, family 56, subfamily B,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.086)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.184)		AAACACCCTCATCCTCATCAT	0.507000													4	54					0	0	0.000602	0	0	
NLRP14	338323	broad.mit.edu	37	11	7060959	7060959	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:7060959A>C	uc001mfb.1	+	3	627	c.304A>C	c.(304-306)ATA>CTA	p.I102L		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	102					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GGCCCAGACTATAGGACCAGA	0.473000													11	117					0	0	0.010729	0	0	
NLRP14	338323	broad.mit.edu	37	11	7064426	7064426	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:7064426C>A	uc001mfb.1	+	4	1492	c.1169C>A	c.(1168-1170)ACA>AAA	p.T390K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	390	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GGTGATGTCACATTGACCTGC	0.493000													13	161					1.05317e-09	1.22991e-09	0.002450	1	0	
SBF2	81846	broad.mit.edu	37	11	9878123	9878123	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:9878123G>T	uc001mib.2	-	19	2383	c.2245C>A	c.(2245-2247)CAC>AAC	p.H749N	SBF2_uc001mif.3_Missense_Mutation_p.H505N|uc001mig.2_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	749					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		TTTGCAAAGTGAATGGCCTGA	0.507000													13	175					5.50884e-06	6.15053e-06	0.013537	1	0	
SBF2	81846	broad.mit.edu	37	11	10024150	10024150	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:10024150C>T	uc001mib.2	-	7	844	c.706G>A	c.(706-708)GAT>AAT	p.D236N	SBF2_uc001mif.3_5'UTR	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	236	DENN.				myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		CTACAAGCATCACTAAGTCTC	0.348000													6	55					0	0	0.001984	0	0	
AMPD3	272	broad.mit.edu	37	11	10506555	10506555	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:10506555C>T	uc001mio.1	+	5	1113	c.778C>T	c.(778-780)CAC>TAC	p.H260Y	AMPD3_uc010rbz.1_Missense_Mutation_p.H101Y|AMPD3_uc001min.1_Missense_Mutation_p.H269Y|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfx.1_Missense_Mutation_p.H260Y|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.H267Y|AMPD3_uc009yfy.2_Missense_Mutation_p.H260Y	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	260					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GGACATGAGCCACATCCTGGC	0.567000													4	39					0	0	0.000602	0	0	
SPTY2D1	144108	broad.mit.edu	37	11	18636837	18636837	+	Silent	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:18636837A>T	uc001moy.2	-	3	1200	c.984T>A	c.(982-984)TCT>TCA	p.S328S	SPTY2D1_uc010rdi.1_Silent_p.S328S	NM_194285	NP_919261	Q68D10	SPT2_HUMAN	SPT2, Suppressor of Ty, domain containing 1	328	Ser-rich.									breast(1)	1						TCCTGCTAGCAGAAGTCTTTG	0.517000													18	202					0	0	0.004990	0	0	
IGSF22	283284	broad.mit.edu	37	11	18738373	18738373	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:18738373G>A	uc009yht.2	-	10	1338	c.1148C>T	c.(1147-1149)ACG>ATG	p.T383M	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	383										ovary(4)|large_intestine(2)|kidney(1)	7						AAGCGTGTGCGTCAGACCATC	0.527000													14	167					0	0	0.003163	0	0	
NELL1	4745	broad.mit.edu	37	11	21250984	21250984	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:21250984C>T	uc001mqe.2	+	14	1686	c.1533C>T	c.(1531-1533)AAC>AAT	p.N511N	NELL1_uc001mqf.2_Silent_p.N511N|NELL1_uc009yid.2_Silent_p.N539N|NELL1_uc010rdo.1_Silent_p.N454N|NELL1_uc010rdp.1_Silent_p.N271N	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	511	EGF-like 3.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						ACGTGGGGAACGGGACCATCT	0.572000													9	39					0	0	0.004482	0	0	
PAX6	5080	broad.mit.edu	37	11	31815288	31815288	+	Silent	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:31815288T>C	uc001mtd.3	-	9	1718	c.828A>G	c.(826-828)AGA>AGG	p.R276R	PAX6_uc001mte.3_Silent_p.R276R|PAX6_uc001mtg.3_Silent_p.R290R|PAX6_uc001mtf.3_Silent_p.R276R|PAX6_uc001mth.3_Silent_p.R276R|PAX6_uc009yjr.2_Silent_p.R276R	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	276					blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					TGCTGGCCTGTCTTCTCTGAT	0.458000									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				11	108					0	0	0.010729	0	0	
PAX6	5080	broad.mit.edu	37	11	31816307	31816307	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:31816307C>G	uc001mtd.3	-	7	1443	c.553G>C	c.(553-555)GAG>CAG	p.E185Q	PAX6_uc001mte.3_Missense_Mutation_p.E185Q|PAX6_uc001mtg.3_Missense_Mutation_p.E199Q|PAX6_uc001mtf.3_Missense_Mutation_p.E185Q|PAX6_uc001mth.3_Missense_Mutation_p.E185Q|PAX6_uc009yjr.2_Missense_Mutation_p.E185Q	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	185	Gln/Gly-rich.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					TTGGTATTCTCTCCCCCTCCT	0.463000									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				10	64					0	0	0.010729	0	0	
WT1	7490	broad.mit.edu	37	11	32417870	32417870	+	Silent	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:32417870A>T	uc001mtn.1	-	7	1378	c.1182T>A	c.(1180-1182)GCT>GCA	p.A394A	WT1_uc001mtl.1_Silent_p.A182A|WT1_uc001mtm.1_Silent_p.A165A|WT1_uc001mto.1_Silent_p.A394A|WT1_uc001mtp.1_Silent_p.A377A|WT1_uc001mtq.1_Silent_p.A377A|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	326	C2H2-type 1.				adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding	p.R394P(6)|p.R394Q(4)|p.R394W(4)|p.R394G(2)|p.V380_S410del(1)	EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			AGCCTGGGTAAGCACACATGA	0.537000			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				5	53					0	0	0.000602	0	0	
C11orf74	119710	broad.mit.edu	37	11	36680701	36680701	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:36680701G>A	uc001mwy.1	+	6	704	c.631G>A	c.(631-633)GAC>AAC	p.D211N	C11orf74_uc010rfd.1_RNA|C11orf74_uc001mww.1_Missense_Mutation_p.D137N|C11orf74_uc001mwx.1_Intron|C11orf74_uc001mwz.1_Missense_Mutation_p.D137N|C11orf74_uc010rfe.1_Intron	NM_138787	NP_620142	Q86VG3	CK074_HUMAN	hypothetical protein LOC119710	211											0	all_lung(20;0.226)	all_hematologic(20;0.0118)				GAAGAGAAAGGACACCAGCCC	0.383000													4	50					0	0	0.009096	0	0	
TSPAN18	90139	broad.mit.edu	37	11	44931284	44931284	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:44931284G>A	uc001mye.3	+	3	253	c.92G>A	c.(91-93)GGC>GAC	p.G31D	TP53I11_uc001myf.1_Intron|TSPAN18_uc001myg.2_Missense_Mutation_p.G31D	NM_130783	NP_570139	Q96SJ8	TSN18_HUMAN	tetraspanin 18 isoform 2	31	Helical; (Potential).					integral to membrane					0						CTGGCCATCGGCATCTGGGTC	0.662000													8	62					0	0	0.003080	0	0	
AMBRA1	55626	broad.mit.edu	37	11	46419435	46419435	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:46419435C>A	uc010rgu.1	-	18	3822	c.3462G>T	c.(3460-3462)CTG>CTT	p.L1154L	AMBRA1_uc010rgt.1_3'UTR|AMBRA1_uc009ylc.1_Silent_p.L1125L|AMBRA1_uc001ncu.1_Silent_p.L1064L|AMBRA1_uc001ncv.2_Silent_p.L1157L|AMBRA1_uc001ncw.2_Silent_p.L1035L|AMBRA1_uc001ncx.2_Silent_p.L1094L	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	1154					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		CCTCCGCCATCAGCCTCTGGA	0.607000													4	44					0.00909568	0.00933456	0.009096	1	0	
PSMC3	5702	broad.mit.edu	37	11	47447454	47447454	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:47447454G>A	uc001nfh.2	-	2	317	c.123C>T	c.(121-123)ATC>ATT	p.I41I	PSMC3_uc009ylr.1_Silent_p.I41I	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	41					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TGCGCTGGATGATCTCCTCCG	0.517000													12	113					0	0	0.003163	0	0	
OR5M1	390168	broad.mit.edu	37	11	56380424	56380424	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:56380424G>A	uc001nja.1	-	1	555	c.555C>T	c.(553-555)ATC>ATT	p.I185I		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AGGCCAGCATGATAAGAGGAG	0.448000													6	59					0	0	0.001168	0	0	
OR5AR1	219493	broad.mit.edu	37	11	56431887	56431887	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:56431887G>T	uc010rjm.1	+	1	726	c.726G>T	c.(724-726)GGG>GGT	p.G242G		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCACCTGCGGGTCTCACCTTA	0.507000													12	95					6.40141e-05	7.03878e-05	0.010729	1	0	
TNKS1BP1	85456	broad.mit.edu	37	11	57076370	57076371	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:57076370_57076371CT>AC	uc001njr.2	-	5	4126_4127	c.3814_3815AG>GT	c.(3814-3816)AGG>GTG	p.R1272V	TNKS1BP1_uc001njs.2_Missense_Mutation_p.R1272V|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.R723V	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1272	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TCCACGCTCCCTTGATTTAAGG	0.624000													12	197					0	0	0.004672	0	0	
OR9Q1	219956	broad.mit.edu	37	11	57946985	57946985	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:57946985G>C	uc001nmj.2	+	3	385	c.69G>C	c.(67-69)TGG>TGC	p.W23C		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				ATCCTGAATGGGCACTCCCTC	0.458000													16	144					0	0	0.004990	0	0	
SCYL1	57410	broad.mit.edu	37	11	65298186	65298186	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:65298186G>C	uc001oea.1	+	7	1013	c.936G>C	c.(934-936)AAG>AAC	p.K312N	SCYL1_uc009yqk.2_Missense_Mutation_p.K312N|SCYL1_uc001oeb.1_Missense_Mutation_p.K312N|SCYL1_uc001oec.1_Missense_Mutation_p.K312N|SCYL1_uc001oed.1_Missense_Mutation_p.K169N|SCYL1_uc001oee.1_5'UTR	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	312	Protein kinase.				regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						GTCGGCACAAGGTGCTGCCCC	0.592000													13	69					0	0	0.001855	0	0	
B3GNT1	11041	broad.mit.edu	37	11	66114059	66114059	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:66114059G>T	uc001ohr.2	-	1	1103	c.958C>A	c.(958-960)CCT>ACT	p.P320T	BRMS1_uc001ohp.1_5'Flank|BRMS1_uc001oho.1_5'Flank	NM_006876	NP_006867	O43505	B3GN1_HUMAN	UDP-GlcNAc:betaGal	320	Lumenal (Potential).				poly-N-acetyllactosamine biosynthetic process	integral to Golgi membrane	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity				0						TCCTGCCAAGGTACCACGTAG	0.617000													8	86					5.4927e-09	6.35602e-09	0.004482	1	0	
FAT3	120114	broad.mit.edu	37	11	92577512	92577512	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:92577512A>C	uc001pdj.3	+	18	10996	c.10979A>C	c.(10978-10980)GAC>GCC	p.D3660A	FAT3_uc001pdi.3_Missense_Mutation_p.D100A	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3660	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCCCCTGAGGACTTCGTGGGG	0.577000										TCGA Ovarian(4;0.039)			9	71					0	0	0.004482	0	0	
CASP4	837	broad.mit.edu	37	11	104825631	104825631	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:104825631C>T	uc001pid.1	-	2	178	c.105G>A	c.(103-105)CTG>CTA	p.L35L	CASP4_uc001pib.1_5'UTR|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Silent_p.L35L|CASP4_uc010ruy.1_Silent_p.L35L	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	35	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		CCTTCCAGTTCAGTACATTTT	0.423000													10	76					0	0	0.006214	0	0	
CEP164	22897	broad.mit.edu	37	11	117261589	117261589	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:117261589C>G	uc001prc.2	+	16	2178	c.2031C>G	c.(2029-2031)GTC>GTG	p.V677V	CEP164_uc001prb.2_Silent_p.V680V|CEP164_uc010rxk.1_Silent_p.V651V|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_Silent_p.V110V	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	677	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GAGCTCAGGTCCAGTCCAGCA	0.612000													9	66					0	0	0.004482	0	0	
DDX6	1656	broad.mit.edu	37	11	118630742	118630742	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr11:118630742C>G	uc001pub.2	-	8	1114	c.753G>C	c.(751-753)TTG>TTC	p.L251F	DDX6_uc001pua.2_5'Flank|DDX6_uc001puc.2_Missense_Mutation_p.L251F	NM_004397	NP_004388	P26196	DDX6_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	251	Helicase ATP-binding.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|RNA-induced silencing complex|stress granule	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding|RNA helicase activity			ovary(1)	1	all_hematologic(175;0.0839)	Renal(330;0.0183)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)|Hepatocellular(160;0.0893)|Breast(348;0.0979)|all_hematologic(192;0.103)		OV - Ovarian serous cystadenocarcinoma(223;3.39e-06)|BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Colorectal(284;0.0377)		CCTGTGACAGCAACTTATCTG	0.353000			T	IGH@	B-NHL								8	35					0	0	0.003080	0	0	
CACNA2D4	93589	broad.mit.edu	37	12	2019093	2019093	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:2019093G>A	uc001qjp.2	-	4	696	c.465C>T	c.(463-465)CAC>CAT	p.H155H	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.H155H	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	155	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CATTGAATTCGTGGTTCAGGT	0.547000													5	26					0	0	0.000602	0	0	
GPRC5D	55507	broad.mit.edu	37	12	13103126	13103126	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:13103126G>A	uc010shp.1	-	1	193	c.193C>T	c.(193-195)CTC>TTC	p.L65F		NM_018654	NP_061124	Q9NZD1	GPC5D_HUMAN	G protein-coupled receptor, family C, group 5,	65	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		AGGAGGAAGAGGAGCTGGGTG	0.522000													5	49					0	0	0.000602	0	0	
Unknown	0	broad.mit.edu	37	12	31300964	31300964	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:31300964G>A	uc010sjy.1	-	11	1296	c.1296C>T	c.(1294-1296)TCC>TCT	p.S432S						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TGTTCGTTCGGGAGTAAAAGC	0.463000													23	183					0	0	0.014323	0	0	
CNTN1	1272	broad.mit.edu	37	12	41410613	41410613	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:41410613G>A	uc001rmm.1	+	19	2427	c.2314G>A	c.(2314-2316)GAA>AAA	p.E772K	CNTN1_uc001rmn.1_Missense_Mutation_p.E761K	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	772	Fibronectin type-III 2.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CCATAAAGATGAAACCATGAG	0.398000													9	107					0	0	0.004482	0	0	
GXYLT1	283464	broad.mit.edu	37	12	42491366	42491366	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:42491366T>A	uc001rms.3	-	7	1264	c.1039A>T	c.(1039-1041)ATA>TTA	p.I347L	GXYLT1_uc001rmt.3_Missense_Mutation_p.I316L	NM_173601	NP_775872	Q4G148	GXLT1_HUMAN	glycosyltransferase 8 domain containing 3	347	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						CTTCCATATATACAATGATCT	0.383000													13	112					0	0	0.004007	0	0	
KRT83	3889	broad.mit.edu	37	12	52714937	52714937	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:52714937G>A	uc001saf.2	-	1	246	c.183C>T	c.(181-183)GCC>GCT	p.A61A		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	61	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCAGGAGCCGGCGCGGAAGC	0.731000													6	55					0	0	0.001168	0	0	
NEUROD4	58158	broad.mit.edu	37	12	55421124	55421124	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:55421124G>T	uc001sgp.3	+	2	1279	c.901G>T	c.(901-903)GGT>TGT	p.G301C		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	301					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						TTTTCAGGCTGGTACCCCCCG	0.473000													51	506					4.17328e-34	5.05973e-34	0.014410	1	0	
OR10P1	121130	broad.mit.edu	37	12	56030784	56030784	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:56030784G>A	uc010spq.1	+	1	109	c.109G>A	c.(109-111)GTC>ATC	p.V37I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						GGTCTACCTGGTCACCTTGCT	0.572000													11	116					0	0	0.008291	0	0	
PAN2	9924	broad.mit.edu	37	12	56718164	56718164	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:56718164C>G	uc001skx.2	-	12	2215	c.1842G>C	c.(1840-1842)CAG>CAC	p.Q614H	PAN2_uc001skw.2_5'Flank|PAN2_uc001skz.2_Missense_Mutation_p.Q614H|PAN2_uc001sky.2_Missense_Mutation_p.Q614H	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	614					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						GATTCCACCTCTGAATGAGCC	0.527000													7	84					0	0	0.001984	0	0	
PPFIA2	8499	broad.mit.edu	37	12	81657147	81657147	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:81657147C>T	uc001szo.1	-	31	3739	c.3578G>A	c.(3577-3579)CGT>CAT	p.R1193H	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1092										ovary(3)|lung(2)|pancreas(1)	6						GGTTGATCCACGTCTGAAGTT	0.433000													4	43					0	0	0.009096	0	0	
STAB2	55576	broad.mit.edu	37	12	104149101	104149101	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:104149101G>C	uc001tjw.2	+	62	6922	c.6736G>C	c.(6736-6738)GCA>CCA	p.A2246P	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2246	Extracellular (Potential).|Link.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCTGTGCTCAGCAGGCTGGCT	0.498000													13	122					0	0	0.013537	0	0	
POLR3B	55703	broad.mit.edu	37	12	106824074	106824074	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:106824074T>A	uc001tlp.2	+	14	1509	c.1287T>A	c.(1285-1287)TTT>TTA	p.F429L	POLR3B_uc001tlq.2_Missense_Mutation_p.F371L	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	429					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TAAAGAGATTTAAAATGGACC	0.433000													21	175					0	0	0.014323	0	0	
IQCD	115811	broad.mit.edu	37	12	113633586	113633586	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:113633586C>G	uc001tuu.2	-	3	1010	c.838G>C	c.(838-840)GAG>CAG	p.E280Q		NM_138451	NP_612460	Q96DY2	IQCD_HUMAN	IQ motif containing D	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(1)	1						ATCTCCCGCTCTTCCCGGATC	0.597000													10	105					0	0	0.006214	0	0	
MED13L	23389	broad.mit.edu	37	12	116429002	116429002	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:116429002T>A	uc001tvw.2	-	17	3812	c.3757A>T	c.(3757-3759)ACT>TCT	p.T1253S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1253					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CAGGGAAGAGTTTGGCGATTG	0.478000													13	101					0	0	0.003163	0	0	
LRRC43	254050	broad.mit.edu	37	12	122669241	122669241	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:122669241G>C	uc009zxm.2	+	2	351	c.326G>C	c.(325-327)AGA>ACA	p.R109T	LRRC43_uc001ubw.3_5'UTR|LRRC43_uc009zxl.1_RNA	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	109											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		AGTTTCCTGAGAGAATTGGCC	0.602000													3	24					0	0	0.009096	0	0	
TCTN2	79867	broad.mit.edu	37	12	124156631	124156631	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr12:124156631G>T	uc001ufp.2	+	3	347	c.219G>T	c.(217-219)GTG>GTT	p.V73V	TCTN2_uc009zya.2_Silent_p.V73V	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	73	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		CGTGTGGAGTGCTGAACAATG	0.502000													7	111					0.00198382	0.00206512	0.001984	1	0	
LOC284232	284232	broad.mit.edu	37	13	19419995	19419995	+	RNA	SNP	C	G	G	rs78291036	by1000genomes	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:19419995C>G	uc010tcj.1	-	1		c.26115G>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GAACTAAGAACAGTTAGATAA	0.294000													12	57					0	0	0.003163	0	0	
FAM123A	219287	broad.mit.edu	37	13	25743820	25743820	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:25743820G>A	uc001uqb.2	-	1	2038	c.1938C>T	c.(1936-1938)GTC>GTT	p.V646V	FAM123A_uc001uqa.2_Silent_p.V527V|FAM123A_uc001uqc.2_Silent_p.V527V	NM_152704	NP_689917	Q8N7J2	F123A_HUMAN	hypothetical protein LOC219287 isoform 1	646										ovary(2)|large_intestine(1)|lung(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TGACTCTGCGGACCAGCACTT	0.577000													9	95					0	0	0.004482	0	0	
FREM2	341640	broad.mit.edu	37	13	39264430	39264430	+	Missense_Mutation	SNP	C	G	G	rs149341036		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:39264430C>G	uc001uwv.2	+	1	3258	c.2949C>G	c.(2947-2949)TTC>TTG	p.F983L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	983	CSPG 6.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGTTGACTTTCCTCTTGGAAG	0.428000													12	137					0	0	0.002450	0	0	
PCDH20	64881	broad.mit.edu	37	13	61986911	61986911	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:61986911G>T	uc001vid.3	-	2	1685	c.1321C>A	c.(1321-1323)CTG>ATG	p.L441M	PCDH20_uc010thj.1_Missense_Mutation_p.L441M	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	414	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AGTTCTTTCAGATAAACCACA	0.423000													12	102					0.00244969	0.00254488	0.002450	1	0	
PCDH9	5101	broad.mit.edu	37	13	67801945	67801945	+	Silent	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:67801945A>G	uc001vik.2	-	2	1320	c.628T>C	c.(628-630)TTG>CTG	p.L210L	PCDH9_uc001vil.2_Silent_p.L210L|PCDH9_uc010thl.1_Silent_p.L210L|PCDH9_uc001vin.3_Silent_p.L210L	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	210	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		TCTCTATCCAAGTTTTGCTGA	0.433000													13	113					0	0	0.013537	0	0	
MYCBP2	23077	broad.mit.edu	37	13	77651284	77651284	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:77651284T>G	uc001vkf.2	-	68	11700	c.11609A>C	c.(11608-11610)CAA>CCA	p.Q3870P	MYCBP2_uc010aev.2_Missense_Mutation_p.Q3274P|MYCBP2_uc001vke.2_Missense_Mutation_p.Q490P	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3870					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GACACTCACTTGAGACGTAAT	0.383000													5	59					0	0	0.000602	0	0	
MYCBP2	23077	broad.mit.edu	37	13	77834716	77834716	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:77834716G>A	uc001vkf.2	-	14	1841	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W	MYCBP2_uc010aev.2_Translation_Start_Site	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	584	RCC1 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTGGATTGCCGTCTGCTCTTA	0.279000													12	56					0	0	0.010729	0	0	
CLDN10	9071	broad.mit.edu	37	13	96086276	96086276	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:96086276G>A	uc001vmg.2	+	1	424	c.189G>A	c.(187-189)CCG>CCA	p.P63P	CLDN10_uc010tii.1_Intron	NM_182848	NP_878268	P78369	CLD10_HUMAN	claudin 10 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			ATTGCCGACCGCATTTTACTA	0.488000													11	55					0	0	0.008291	0	0	
TMTC4	84899	broad.mit.edu	37	13	101278038	101278038	+	Splice_Site	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:101278038C>A	uc001vou.2	-	13	1797	c.1637_splice	c.e13+1	p.Q546_splice	TMTC4_uc001vot.2_Splice_Site_p.Q565_splice|TMTC4_uc010tja.1_Splice_Site_p.Q435_splice|TMTC4_uc001vov.1_Splice_Site_p.Q291_splice|TMTC4_uc001vow.1_Splice_Site_p.Q329_splice	NM_001079669	NP_001073137	Q5T4D3	TMTC4_HUMAN	transmembrane and tetratricopeptide repeat							integral to membrane	binding			ovary(2)|breast(1)	3	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					ACAATGCTTACTGTATTTGAA	0.373000													25	38					1.66031e-10	1.96148e-10	0.003954	1	0	
COL4A1	1282	broad.mit.edu	37	13	110826862	110826862	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr13:110826862G>A	uc001vqw.3	-	39	3459	c.3337C>T	c.(3337-3339)CTA>TTA	p.L1113L	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1113	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TCTCCAGGTAGCCCAGGACTT	0.498000													7	85					0	0	0.001984	0	0	
OR4K1	79544	broad.mit.edu	37	14	20404690	20404690	+	Missense_Mutation	SNP	C	A	A	rs2792147		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:20404690C>A	uc001vwj.1	+	1	865	c.865C>A	c.(865-867)CTG>ATG	p.L289M		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CATCTACTCTCTGAGGAATGA	0.408000													13	137					1.05317e-09	1.22991e-09	0.002450	1	0	
OR4K15	81127	broad.mit.edu	37	14	20444560	20444560	+	Missense_Mutation	SNP	C	G	G	rs145393308		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:20444560C>G	uc010tkx.1	+	1	883	c.883C>G	c.(883-885)CTT>GTT	p.L295V		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	295	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGACAAAGTCCTTGCTGTATT	0.418000													6	103					0	0	0.001984	0	0	
RNASE10	338879	broad.mit.edu	37	14	20978867	20978867	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:20978867C>A	uc010tlj.1	+	1	237	c.237C>A	c.(235-237)GGC>GGA	p.G79G	RNASE10_uc001vxp.2_Silent_p.G107G	NM_001012975	NP_001012993	Q5GAN6	RNS10_HUMAN	ribonuclease, RNase A family, 10 (non-active)	79						extracellular region	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00123)		Epithelial(56;1.81e-07)|all cancers(55;1.86e-06)	GBM - Glioblastoma multiforme(265;0.022)|READ - Rectum adenocarcinoma(17;0.191)		TGCAACCTGGCTGGCCAGAAG	0.532000													7	46					8.12818e-05	8.84179e-05	0.001984	1	0	
OXA1L	5018	broad.mit.edu	37	14	23235817	23235817	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:23235817A>T	uc001wgn.2	+	1	87	c.87A>T	c.(85-87)CAA>CAT	p.Q29H	OXA1L_uc010tnc.1_Missense_Mutation_p.Q29H|OXA1L_uc001wgo.2_RNA|OXA1L_uc010akc.2_Missense_Mutation_p.Q29H|OXA1L_uc001wgp.2_5'Flank|OXA1L_uc001wgq.2_5'Flank	NM_005015	NP_005006	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	Error:Variant_position_missing_in_Q15070_after_alignment					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)	1	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		TGCGGCTACAATTCTGGCTTC	0.522000													14	164					0	0	0.003163	0	0	
NFATC4	4776	broad.mit.edu	37	14	24843060	24843060	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:24843060G>A	uc001wpc.2	+	5	2040	c.1719G>A	c.(1717-1719)GTG>GTA	p.V573V	NFATC4_uc010tok.1_Silent_p.V636V|NFATC4_uc010tol.1_Silent_p.V636V|NFATC4_uc010alr.2_Silent_p.V636V|NFATC4_uc010als.2_Silent_p.V586V|NFATC4_uc010tom.1_Silent_p.V586V|NFATC4_uc010ton.1_Silent_p.V586V|NFATC4_uc010too.1_Silent_p.V586V|NFATC4_uc010alt.2_Silent_p.V605V|NFATC4_uc010top.1_Silent_p.V605V|NFATC4_uc010toq.1_Silent_p.V605V|NFATC4_uc010alu.2_Silent_p.V265V|NFATC4_uc010tor.1_Silent_p.V573V|NFATC4_uc010tos.1_Silent_p.V503V|NFATC4_uc010tot.1_Silent_p.V561V|NFATC4_uc010tou.1_Silent_p.V503V|NFATC4_uc010tov.1_Silent_p.V561V|NFATC4_uc010tow.1_Silent_p.V503V|NFATC4_uc010alv.2_Silent_p.V561V|NFATC4_uc010tox.1_Silent_p.V503V|NFATC4_uc001wpd.2_Silent_p.V108V|NFATC4_uc010toy.1_Silent_p.V108V|NFATC4_uc010toz.1_Silent_p.V108V|NFATC4_uc010tpa.1_5'UTR|NFATC4_uc010tpb.1_5'UTR	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	573	RHD.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CAGCATCGGTGCCCATCGAGT	0.592000													8	36					0	0	0.006214	0	0	
ARHGAP5	394	broad.mit.edu	37	14	32560468	32560468	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:32560468C>G	uc001wrl.2	+	2	832	c.593C>G	c.(592-594)GCA>GGA	p.A198G	ARHGAP5_uc001wrm.2_Missense_Mutation_p.A198G|ARHGAP5_uc001wrn.2_Missense_Mutation_p.A198G|ARHGAP5_uc001wro.2_Intron|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	198					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ATAATAGCAGCAACTAAATGT	0.328000													12	116					0	0	0.010729	0	0	
PSMA6	5687	broad.mit.edu	37	14	35782239	35782239	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:35782239G>C	uc001wtd.2	+	5	671	c.562G>C	c.(562-564)GAT>CAT	p.D188H	KIAA0391_uc001wta.2_RNA|PSMA6_uc010tpt.1_Missense_Mutation_p.D109H|PSMA6_uc010tpu.1_Missense_Mutation_p.D109H	NM_002791	NP_002782	P60900	PSA6_HUMAN	proteasome alpha 6 subunit	188					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nuclear matrix|polysome|proteasome core complex, alpha-subunit complex|sarcomere	NF-kappaB binding|purine ribonucleoside triphosphate binding|RNA binding|threonine-type endopeptidase activity				0	Breast(36;0.0519)|Hepatocellular(127;0.158)		Lung(238;3.81e-05)|LUAD - Lung adenocarcinoma(48;5.59e-05)|Epithelial(34;0.00342)|all cancers(34;0.00973)	GBM - Glioblastoma multiforme(112;0.0234)		GAAGAAATTTGATTGGACATT	0.373000													14	112					0	0	0.003163	0	0	
SEC23A	10484	broad.mit.edu	37	14	39510066	39510066	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:39510066C>G	uc001wup.1	-	18	2235	c.2012G>C	c.(2011-2013)GGA>GCA	p.G671A	SEC23A_uc010tqa.1_Missense_Mutation_p.G557A|SEC23A_uc010tqb.1_Missense_Mutation_p.G642A	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	671					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		ATCCTGGTATCCTGACTTCCG	0.388000													10	65					0	0	0.006214	0	0	
PPIL5	122769	broad.mit.edu	37	14	50074222	50074222	+	Silent	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:50074222A>G	uc001wwn.2	+	3	711	c.387A>G	c.(385-387)TCA>TCG	p.S129S	SDCCAG1_uc010anj.1_Intron|PPIL5_uc001wwo.2_Intron|PPIL5_uc010ank.2_Silent_p.S70S|PPIL5_uc001wwp.2_RNA	NM_152329	NP_689542	Q96L50	LLR1_HUMAN	peptidylprolyl isomerase (cyclophilin)-like 5	129											0	all_epithelial(31;0.0021)|Breast(41;0.0124)					TGAAGACTTCAGAATTTGAAA	0.358000													5	64					0	0	0.000602	0	0	
NAA30	122830	broad.mit.edu	37	14	57858401	57858401	+	Nonsense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:57858401T>A	uc001xcx.3	+	2	880	c.726T>A	c.(724-726)TAT>TAA	p.Y242*	NAA30_uc010trk.1_Intron|NAA30_uc010aow.2_Intron	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	242	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						ACTCCATTTATACCTATAGAT	0.453000													33	255					0	0	0.013726	0	0	
ZFYVE26	23503	broad.mit.edu	37	14	68234421	68234421	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:68234421C>A	uc001xka.2	-	31	5929	c.5790G>T	c.(5788-5790)CAG>CAT	p.Q1930H	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.Q1930H	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1930					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		TTGCTATTACCTGCTCATAGT	0.418000													11	120					1.58986e-06	1.79878e-06	0.008291	1	0	
ADAM21	8747	broad.mit.edu	37	14	70925356	70925356	+	Silent	SNP	C	T	T	rs145696569		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:70925356C>T	uc001xmd.2	+	1	1140	c.1140C>T	c.(1138-1140)TAC>TAT	p.Y380Y		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	380	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		ATTGCAGTTACGCTGATTTTA	0.423000													10	100					0	0	0.010729	0	0	
RBM25	58517	broad.mit.edu	37	14	73544115	73544115	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:73544115G>C	uc001xno.2	+	4	403	c.195G>C	c.(193-195)TTG>TTC	p.L65F	RBM25_uc001xnn.3_Missense_Mutation_p.L65F|RBM25_uc010ttu.1_Missense_Mutation_p.L65F|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	65					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		GAAAGCATTTGGGCGCAAGAA	0.373000													10	51					0	0	0.013537	0	0	
RBM25	58517	broad.mit.edu	37	14	73544125	73544125	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:73544125A>C	uc001xno.2	+	4	413	c.205A>C	c.(205-207)AAG>CAG	p.K69Q	RBM25_uc001xnn.3_Missense_Mutation_p.K69Q|RBM25_uc010ttu.1_Missense_Mutation_p.K69Q|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	69					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		GGGCGCAAGAAAGGATCATCC	0.388000													6	46					0	0	0.003080	0	0	
ZNF410	57862	broad.mit.edu	37	14	74388851	74388851	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:74388851C>T	uc001xoz.1	+	10	1394	c.1212C>T	c.(1210-1212)AGC>AGT	p.S404S	ZNF410_uc001xoy.1_RNA|ZNF410_uc010tuf.1_Intron|ZNF410_uc010tug.1_Silent_p.S135S|ZNF410_uc010tuh.1_Silent_p.S331S|ZNF410_uc010tui.1_RNA|ZNF410_uc010arz.1_Silent_p.S421S|ZNF410_uc001xpa.1_Silent_p.S208S|ZNF410_uc001xpb.1_Intron|ZNF410_uc001xpc.1_Silent_p.S351S|ZNF410_uc010tuj.1_Silent_p.S208S	NM_021188	NP_067011	Q86VK4	ZN410_HUMAN	zinc finger protein 410	404					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00369)		CCCAGCCCAGCCTTGGTGGAG	0.463000													8	58					0	0	0.003080	0	0	
TTLL5	23093	broad.mit.edu	37	14	76249678	76249678	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:76249678C>G	uc001xrx.2	+	26	2996	c.2791C>G	c.(2791-2793)CAG>GAG	p.Q931E	TTLL5_uc010ask.1_Missense_Mutation_p.Q945E|TTLL5_uc001xrz.2_Missense_Mutation_p.Q506E|TTLL5_uc001xsa.2_Missense_Mutation_p.Q4E|TTLL5_uc001xry.1_RNA	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	931					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CATGCCTCACCAGCCAACAAT	0.532000													12	104					0	0	0.013537	0	0	
KCNK10	54207	broad.mit.edu	37	14	88729835	88729835	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:88729835G>A	uc001xwo.2	-	2	555	c.98C>T	c.(97-99)CCG>CTG	p.P33L	KCNK10_uc001xwm.2_Missense_Mutation_p.P38L|KCNK10_uc001xwn.2_Missense_Mutation_p.P38L	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	33	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGCCGGAGCCGGGGGTTGCCC	0.647000													7	78					0	0	0.001984	0	0	
ZC3H14	79882	broad.mit.edu	37	14	89076102	89076102	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:89076102C>T	uc001xww.2	+	15	2277	c.2052C>T	c.(2050-2052)TAC>TAT	p.Y684Y	ZC3H14_uc010twd.1_Silent_p.Y683Y|ZC3H14_uc010twe.1_Silent_p.Y678Y|ZC3H14_uc001xwx.2_Silent_p.Y527Y|ZC3H14_uc010twf.1_Silent_p.Y397Y|ZC3H14_uc001xwy.2_Silent_p.Y519Y|ZC3H14_uc010twg.1_Silent_p.Y373Y|ZC3H14_uc001xxa.2_Silent_p.Y229Y|ZC3H14_uc001xxc.2_Silent_p.Y228Y|ZC3H14_uc001xxb.2_Silent_p.Y254Y	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	684	C3H1-type 4.					cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						TCTGCCGTTACTTCCCTGCTT	0.393000													6	60					0	0	0.003080	0	0	
TDP1	55775	broad.mit.edu	37	14	90429519	90429519	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:90429519G>C	uc001xxy.2	+	3	360	c.61G>C	c.(61-63)GAA>CAA	p.E21Q	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Missense_Mutation_p.E21Q|TDP1_uc010atn.2_Missense_Mutation_p.E21Q|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Missense_Mutation_p.E21Q|TDP1_uc001xyc.1_Missense_Mutation_p.E21Q	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	21					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		AAGTGAGGAAGAAAAGCCAAA	0.478000								Repair_of_DNA-protein_crosslinks					7	84					0	0	0.006214	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94044294	94044294	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:94044294G>A	uc001ybv.1	+	15	1870	c.1787G>A	c.(1786-1788)CGT>CAT	p.R596H	KIAA1409_uc001ybs.1_Missense_Mutation_p.R596H	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	773						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AGTCCGTTTCGTAGCCCTTTC	0.433000													11	150					0	0	0.008291	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94088842	94088842	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:94088842G>A	uc001ybv.1	+	28	4881	c.4798G>A	c.(4798-4800)GCT>ACT	p.A1600T	KIAA1409_uc001ybs.1_Missense_Mutation_p.A1578T	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1755						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GAAGTCGTTTGCTCTCCCCGA	0.592000													11	89					0	0	0.010729	0	0	
DYNC1H1	1778	broad.mit.edu	37	14	102493538	102493538	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:102493538G>C	uc001yks.2	+	45	8963	c.8799G>C	c.(8797-8799)TTG>TTC	p.L2933F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	2933	AAA 4 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AAGGCCACTTGCTTCTGATTG	0.448000													27	285					0	0	0.004656	0	0	
DYNC1H1	1778	broad.mit.edu	37	14	102510823	102510823	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:102510823C>A	uc001yks.2	+	71	13061	c.12897C>A	c.(12895-12897)GGC>GGA	p.G4299G		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4299					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TGCCAGATGGCATCAGGTATG	0.517000													8	61					0.000274275	0.000292714	0.004482	1	0	
AHNAK2	113146	broad.mit.edu	37	14	105416425	105416425	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr14:105416425C>T	uc010axc.1	-	7	5483	c.5363G>A	c.(5362-5364)AGC>AAC	p.S1788N	AHNAK2_uc001ypx.2_Missense_Mutation_p.S1688N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1788						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CACCTCCACGCTGGGCAGAGA	0.662000													23	262					0	0	0.014323	0	0	
MKRN3	7681	broad.mit.edu	37	15	23811185	23811185	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:23811185C>A	uc001ywh.3	+	1	732	c.256C>A	c.(256-258)CCG>ACG	p.P86T	MKRN3_uc001ywi.2_Missense_Mutation_p.P86T|MKRN3_uc010ayi.1_Missense_Mutation_p.P86T	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	86						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding	p.P86P(1)		lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CTGGCCCAGTCCGTTGCCAAG	0.617000													5	48					0.000602214	0.000636019	0.000602	1	0	
HERC2	8924	broad.mit.edu	37	15	28358272	28358272	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:28358272C>T	uc001zbj.2	-	92	14283	c.14177G>A	c.(14176-14178)CGG>CAG	p.R4726Q	HERC2_uc001zbi.2_Missense_Mutation_p.R415Q	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	4726	HECT.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAGCCTCGTCCGGCCCCAGAC	0.647000													5	49					0	0	0.000602	0	0	
HERC2	8924	broad.mit.edu	37	15	28515891	28515891	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:28515891G>C	uc001zbj.2	-	10	1313	c.1207C>G	c.(1207-1209)CTG>GTG	p.L403V	HERC2_uc001zbl.1_Missense_Mutation_p.L98V	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	403					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GGCGTAGCCAGACGGTCTAAA	0.512000													5	64					0	0	0.000602	0	0	
PLA2G4D	283748	broad.mit.edu	37	15	42374530	42374530	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:42374530G>A	uc001zox.2	-	9	825	c.730C>T	c.(730-732)CTG>TTG	p.L244L		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	244					phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		AAGGGCCTCAGGGGCACAGTG	0.443000													10	42					0	0	0.010729	0	0	
C15orf21	283651	broad.mit.edu	37	15	45848224	45848224	+	RNA	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:45848224G>T	uc010beg.1	+	6		c.1219G>T			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TGCAGATTTTGTTTAGCTTTT	0.318000			T	ETV1	prostate								6	22					0.00307968	0.00318631	0.003080	1	0	
SPPL2A	84888	broad.mit.edu	37	15	51031977	51031977	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:51031977C>G	uc001zyv.2	-	6	813	c.633G>C	c.(631-633)AAG>AAC	p.K211N		NM_032802	NP_116191	Q8TCT8	PSL2_HUMAN	signal peptide peptidase-like 2A	211						integral to membrane	aspartic-type endopeptidase activity				0				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		ATTCTTCCTTCTTTTTCCTCA	0.338000													7	51					0	0	0.001984	0	0	
MTFMT	123263	broad.mit.edu	37	15	65319186	65319186	+	Silent	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:65319186A>G	uc002aof.3	-	2	428	c.402T>C	c.(400-402)CTT>CTC	p.L134L		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	134						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	ATTTAAGAATAAGAGCCTCAT	0.373000													8	54					0	0	0.003080	0	0	
MTFMT	123263	broad.mit.edu	37	15	65319188	65319188	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:65319188G>C	uc002aof.3	-	2	426	c.400C>G	c.(400-402)CTT>GTT	p.L134V		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	134						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	TTAAGAATAAGAGCCTCATTC	0.378000													8	54					0	0	0.003080	0	0	
GOLGA6C	653641	broad.mit.edu	37	15	75557726	75557726	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:75557726G>T	uc002azs.1	+	9	761	c.684G>T	c.(682-684)AGG>AGT	p.R228S	uc002azt.1_5'Flank	NM_001145224	NP_001138696	A6NDK9	GOG6C_HUMAN	golgi autoantigen, golgin subfamily a, 6D	240	Potential.									ovary(1)	1						AAGGAGAGAGGGCCCGGTGGC	0.433000													12	96					3.45872e-05	3.82795e-05	0.004007	1	0	
POLG	5428	broad.mit.edu	37	15	89868908	89868908	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:89868908C>A	uc002bns.3	-	10	2004	c.1722G>T	c.(1720-1722)CGG>CGT	p.R574R	POLG_uc002bnr.3_Silent_p.R574R	NM_002693	NP_002684	P54098	DPOG1_HUMAN	DNA-directed DNA polymerase gamma	574			R -> W (in PEOB; sporadic case).		base-excision repair, gap-filling|cell death|DNA-dependent DNA replication	mitochondrial nucleoid	DNA binding|DNA-directed DNA polymerase activity|protease binding			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)			GGCAGAGCTTCCGGTACCATC	0.612000								DNA_polymerases_(catalytic_subunits)					5	71					4.096e-09	4.75061e-09	0.001168	1	0	
FURIN	5045	broad.mit.edu	37	15	91424172	91424172	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:91424172A>C	uc002bpu.1	+	15	1910	c.1694A>C	c.(1693-1695)AAG>ACG	p.K565T		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	565	Cys-rich.				cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			ACGCTGACCAAGTTCACCCTC	0.622000													8	116					0	0	0.006214	0	0	
HDDC3	374659	broad.mit.edu	37	15	91475027	91475027	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr15:91475027C>T	uc002bqf.3	-	3	320	c.316G>A	c.(316-318)GAG>AAG	p.E106K	UNC45A_uc002bqd.2_Intron|HDDC3_uc002bqe.3_Missense_Mutation_p.E106K	NM_198527	NP_940929	Q8N4P3	MESH1_HUMAN	HD domain containing 3	106	HD.						guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity|metal ion binding|phosphoric diester hydrolase activity			ovary(1)	1	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GGCGCTTGCTCCACCTGCAGC	0.597000											OREG0023475	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	145					0	0	0.008291	0	0	
PIGQ	9091	broad.mit.edu	37	16	629087	629087	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:629087C>T	uc002cho.2	+	7	1344	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	PIGQ_uc010bqw.2_Silent_p.I414I|PIGQ_uc002chn.2_Silent_p.I414I|PIGQ_uc010uui.1_Silent_p.I428I|PIGQ_uc002chp.2_5'Flank	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	414	Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCCTGAAGATCCATGGCCTGT	0.512000													9	55					0	0	0.004482	0	0	
STUB1	10273	broad.mit.edu	37	16	731803	731803	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:731803G>C	uc002cit.2	+	4	946	c.535G>C	c.(535-537)GAG>CAG	p.E179Q	STUB1_uc002ciu.2_Missense_Mutation_p.E107Q|STUB1_uc010bqz.2_RNA|STUB1_uc002civ.2_RNA|JMJD8_uc002ciw.1_3'UTR|JMJD8_uc002cix.1_3'UTR|JMJD8_uc002ciy.1_3'UTR	NM_005861	NP_005852	Q9UNE7	CHIP_HUMAN	STIP1 homology and U-box containing protein 1	179					cellular response to misfolded protein|DNA repair|misfolded or incompletely synthesized protein catabolic process|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process|protein autoubiquitination|protein K63-linked ubiquitination|protein maturation|regulation of glucocorticoid metabolic process|ubiquitin-dependent SMAD protein catabolic process	cytoplasm|nuclear inclusion body|ubiquitin conjugating enzyme complex|ubiquitin ligase complex	Hsp70 protein binding|Hsp90 protein binding|kinase binding|misfolded protein binding|protein binding, bridging|protein homodimerization activity|SMAD binding|TPR domain binding|ubiquitin-ubiquitin ligase activity				0		Hepatocellular(780;0.00335)				GGAGCTGGAAGAGTGCCAGCG	0.627000													8	65					0	0	0.004482	0	0	
NAT15	79903	broad.mit.edu	37	16	3533413	3533413	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:3533413G>A	uc002cvh.3	+	6	634	c.388G>A	c.(388-390)GAC>AAC	p.D130N	NAT15_uc010uxb.1_Missense_Mutation_p.D137N|NAT15_uc010btk.1_Missense_Mutation_p.D65N|NAT15_uc010btl.2_Intron|NAT15_uc010btm.2_Missense_Mutation_p.D130N|NAT15_uc010uxc.1_Missense_Mutation_p.D130N|NAT15_uc010uxd.1_Intron|NAT15_uc010uxe.1_Intron|NAT15_uc002cvg.1_Missense_Mutation_p.D130N	NM_001083601	NP_001077070	Q9H7X0	NAT15_HUMAN	N-acetyltransferase 15	130	N-acetyltransferase.						N-acetyltransferase activity				0						CACCGCCCAGGACCACTGCAA	0.463000													6	30					0	0	0.001168	0	0	
GRIN2A	2903	broad.mit.edu	37	16	9892258	9892258	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:9892258G>A	uc002czo.3	-	11	2780	c.2232C>T	c.(2230-2232)GGC>GGT	p.G744G	GRIN2A_uc010uym.1_Silent_p.G744G|GRIN2A_uc010uyn.1_Silent_p.G587G|GRIN2A_uc002czr.3_Silent_p.G744G	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	744	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCAGCTTGCAGCCTTCATCCC	0.542000													8	88					0	0	0.004482	0	0	
PDXDC1	23042	broad.mit.edu	37	16	15098145	15098145	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:15098145C>T	uc002dda.3	+	5	568	c.344C>T	c.(343-345)ACT>ATT	p.T115I	PDXDC1_uc010uzl.1_Missense_Mutation_p.T100I|PDXDC1_uc010uzm.1_Intron|PDXDC1_uc010bvc.1_Missense_Mutation_p.T56I|PDXDC1_uc002dcz.2_Missense_Mutation_p.T115I|PDXDC1_uc002ddb.3_Missense_Mutation_p.T88I|PDXDC1_uc010uzn.1_Missense_Mutation_p.T87I|PDXDC1_uc002ddc.2_Missense_Mutation_p.T115I	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	115					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	AAACTTACAACTAGGATACTT	0.388000													15	264					0	0	0.004007	0	0	
TMC5	79838	broad.mit.edu	37	16	19477458	19477458	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:19477458C>A	uc002dgc.3	+	9	2289	c.1540C>A	c.(1540-1542)CAG>AAG	p.Q514K	TMC5_uc010vaq.1_Missense_Mutation_p.Q514K|TMC5_uc002dgb.3_Missense_Mutation_p.Q514K|TMC5_uc010var.1_Missense_Mutation_p.Q514K|TMC5_uc002dgd.1_Missense_Mutation_p.Q268K|TMC5_uc002dge.3_Missense_Mutation_p.Q268K|TMC5_uc002dgf.3_Missense_Mutation_p.Q197K|TMC5_uc002dgg.3_Missense_Mutation_p.Q155K	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	514	Extracellular (Potential).					integral to membrane				skin(1)	1						TTCCACCATCCAGCACGGGAA	0.468000													7	60					2.0095e-06	2.26347e-06	0.001984	1	0	
DNAH3	55567	broad.mit.edu	37	16	20970669	20970669	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:20970669G>C	uc010vbe.1	-	54	10658	c.10658C>G	c.(10657-10659)TCC>TGC	p.S3553C	DNAH3_uc010vbd.1_Missense_Mutation_p.S988C	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3553	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGGCCAAGGGAGATGGTCTG	0.532000													15	119					0	0	0.003163	0	0	
DNAH3	55567	broad.mit.edu	37	16	20999373	20999373	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:20999373G>C	uc010vbe.1	-	45	6616	c.6616C>G	c.(6616-6618)CAT>GAT	p.H2206D	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2206	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATATTCAGATGGCGAGTGAAT	0.438000													8	114					0	0	0.004482	0	0	
DNAH3	55567	broad.mit.edu	37	16	21042585	21042585	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:21042585C>G	uc010vbe.1	-	37	5221	c.5221G>C	c.(5221-5223)GTG>CTG	p.V1741L		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1741	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGTACTCCACAGCAAACTCC	0.493000													9	61					0	0	0.004482	0	0	
ANKS4B	257629	broad.mit.edu	37	16	21261950	21261950	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:21261950C>A	uc010bwp.1	+	2	1106	c.1063C>A	c.(1063-1065)CAG>AAG	p.Q355K	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	355	SAM.									ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		CTTGCTGTCTCAGCACCTGGA	0.512000													4	49					0.00909568	0.00933456	0.009096	1	0	
KIF22	3835	broad.mit.edu	37	16	29816605	29816605	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:29816605G>T	uc002dts.3	+	14	1996	c.1972G>T	c.(1972-1974)GCC>TCC	p.A658S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.A590S|KIF22_uc010vdw.1_Missense_Mutation_p.A590S|KIF22_uc010bzf.2_Missense_Mutation_p.A604S|KIF22_uc002dtt.1_3'UTR|KIF22_uc002frc.1_RNA|MAZ_uc002dtv.1_5'Flank|MAZ_uc010vdx.1_5'Flank|MAZ_uc002dtw.2_5'Flank|MAZ_uc002dtx.2_5'Flank|MAZ_uc002dty.2_5'Flank|MAZ_uc010bzg.2_5'Flank|MAZ_uc002dtz.1_5'Flank|MAZ_uc002dua.2_5'Flank|MAZ_uc010vdy.1_5'Flank	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	658					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						GGGTCTCGCCGCCGGCCAGCG	0.612000													15	186					8.10497e-08	9.29419e-08	0.010504	1	0	
CD2BP2	10421	broad.mit.edu	37	16	30364910	30364910	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:30364910G>A	uc002dxr.2	-	4	840	c.587C>T	c.(586-588)CCT>CTT	p.P196L	CD2BP2_uc002dxs.2_Missense_Mutation_p.P196L	NM_006110	NP_006101	O95400	CD2B2_HUMAN	CD2 antigen (cytoplasmic tail) binding protein	196					assembly of spliceosomal tri-snRNP	cytoplasm|nucleoplasm|U5 snRNP	protein binding|ribonucleoprotein binding			ovary(1)	1						CAGGCGCTGAGGGGAACTGGG	0.647000													4	27					0	0	0.009096	0	0	
BCL7C	9274	broad.mit.edu	37	16	30904233	30904233	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:30904233G>A	uc002dzv.2	-	3	342	c.208C>T	c.(208-210)CGT>TGT	p.R70C	BCL7C_uc002dzt.1_Missense_Mutation_p.R70C|uc002dzu.2_Intron|MIR762_hsa-mir-762|MI0003892_5'Flank	NM_004765	NP_004756	Q8WUZ0	BCL7C_HUMAN	B-cell CLL/lymphoma 7C	70					apoptosis						0			Colorectal(24;0.198)			TCCCGGCCACGGGATCTCTCT	0.637000													17	74					0	0	0.006122	0	0	
ITGAX	3687	broad.mit.edu	37	16	31382721	31382721	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:31382721G>A	uc002ebu.1	+	16	1975	c.1908G>A	c.(1906-1908)GCG>GCA	p.A636A	ITGAX_uc002ebt.2_Silent_p.A636A	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	636	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCAGGTCTGCGTTTGAGTGTC	0.587000													7	45					0	0	0.003080	0	0	
ITGAD	3681	broad.mit.edu	37	16	31424270	31424270	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:31424270G>C	uc002ebv.1	+	15	1868	c.1819G>C	c.(1819-1821)GGC>CGC	p.G607R	ITGAD_uc010cap.1_Missense_Mutation_p.G608R	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	607	Extracellular (Potential).|FG-GAP 7.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GGGGGCCCGGGGCCAGGTGCT	0.667000													10	69					0	0	0.006214	0	0	
MYLK3	91807	broad.mit.edu	37	16	46746663	46746663	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:46746663C>G	uc002eei.3	-	10	2127	c.2011G>C	c.(2011-2013)GTG>CTG	p.V671L	MYLK3_uc010vge.1_Missense_Mutation_p.V330L	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	671	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CCGAAGTTCACCTTCAGCTTC	0.542000													6	58					0	0	0.001984	0	0	
ABCC11	85320	broad.mit.edu	37	16	48212523	48212523	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:48212523T>A	uc002eff.1	-	23	3683	c.3333A>T	c.(3331-3333)ATA>ATT	p.I1111I	ABCC11_uc002efg.1_Silent_p.I1111I|ABCC11_uc002efh.1_Silent_p.I1111I|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1111	Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TGTACTGCAGTATCCTCTCTA	0.582000									Cerumen_Type				9	86					0	0	0.004482	0	0	
CYLD	1540	broad.mit.edu	37	16	50813850	50813850	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:50813850A>T	uc002egp.1	+	9	1828	c.1413A>T	c.(1411-1413)GAA>GAT	p.E471D	CYLD_uc002ego.2_Missense_Mutation_p.E468D|CYLD_uc010cbs.1_Missense_Mutation_p.E468D|CYLD_uc002egq.1_Missense_Mutation_p.E468D|CYLD_uc002egr.1_Missense_Mutation_p.E468D|CYLD_uc002egs.1_Missense_Mutation_p.E468D	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	471	Interaction with TRIP.|Interaction with IKBKG/NEMO.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				ATGGTCTAGAAGTGGGCTCAT	0.532000			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				21	72					0	0	0.008871	0	0	
FTO	79068	broad.mit.edu	37	16	54145683	54145683	+	Silent	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:54145683A>G	uc002ehr.2	+	9	1596	c.1374A>G	c.(1372-1374)TCA>TCG	p.S458S	FTO_uc010vha.1_Silent_p.S162S|FTO_uc010cbz.2_Silent_p.S59S|FTO_uc002ehs.2_RNA	NM_001080432	NP_001073901	Q9C0B1	FTO_HUMAN	fat mass and obesity associated	458					DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation|oxidative single-stranded RNA demethylation|RNA repair	nucleus	DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidative DNA demethylase activity|oxidative RNA demethylase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GGTGCCAGTCACGAATTGCCC	0.512000													21	169					0	0	0.010504	0	0	
SLC6A2	6530	broad.mit.edu	37	16	55690822	55690822	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:55690822C>T	uc002eif.2	+	2	327	c.216C>T	c.(214-216)TTC>TTT	p.F72F	SLC6A2_uc010ccd.2_Silent_p.F72F|SLC6A2_uc002eig.2_Silent_p.F72F|SLC6A2_uc002eih.2_Silent_p.F72F	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	72	Helical; Name=1; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	TAGTCGGCTTCGCAGTGGACC	0.672000													14	111					0	0	0.003163	0	0	
CNGB1	1258	broad.mit.edu	37	16	57931344	57931344	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:57931344C>T	uc002emt.2	-	31	3264	c.3199G>A	c.(3199-3201)GTG>ATG	p.V1067M	CNGB1_uc010cdh.2_Missense_Mutation_p.V1061M	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1067	Cytoplasmic (Potential).|cAMP (By similarity).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GGATAATGCACCAAAATCTCA	0.463000													8	53					0	0	0.003080	0	0	
CNOT1	23019	broad.mit.edu	37	16	58562514	58562514	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:58562514G>A	uc002env.2	-	44	6611	c.6318C>T	c.(6316-6318)TTC>TTT	p.F2106F	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.F2101F|CNOT1_uc002ent.2_Silent_p.F44F|CNOT1_uc010vik.1_Silent_p.F1063F	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	2106					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GGAACTCTGGGAAATCATGCA	0.358000													23	50					0	0	0.012319	0	0	
CDH16	1014	broad.mit.edu	37	16	66948278	66948278	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:66948278G>A	uc002eql.2	-	7	694	c.621C>T	c.(619-621)TAC>TAT	p.Y207Y	CDH16_uc010cdy.2_Silent_p.Y207Y|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	207	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		CCAACAGCTGGTAGGTCCTCT	0.622000													9	37					0	0	0.004482	0	0	
DUS2L	54920	broad.mit.edu	37	16	68100496	68100496	+	Silent	SNP	C	A	A	rs143329208		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:68100496C>A	uc002evi.2	+	10	660	c.511C>A	c.(511-513)CGG>AGG	p.R171R	DUS2L_uc002evj.2_Silent_p.R171R|DUS2L_uc010vkk.1_Silent_p.R136R|DUS2L_uc010cez.2_Silent_p.R84R	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	171					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		CCTTGTGAAGCGGATAGAGAG	0.542000													15	247					7.05477e-17	8.51264e-17	0.004990	1	0	
WWP2	11060	broad.mit.edu	37	16	69832599	69832599	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr16:69832599C>T	uc002exu.1	+	4	174	c.85C>T	c.(85-87)CCC>TCC	p.P29S	WWP2_uc002ext.2_Missense_Mutation_p.P29S|WWP2_uc002exv.1_Missense_Mutation_p.P29S	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	29	C2.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						GTCCGCAAAGCCCAAGGTGCA	0.537000											OREG0023909	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	129					0	0	0.006214	0	0	
INPP5K	51763	broad.mit.edu	37	17	1416808	1416808	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:1416808G>T	uc002fsr.2	-	3	589	c.200C>A	c.(199-201)GCC>GAC	p.A67D	INPP5K_uc002fss.2_5'UTR|INPP5K_uc002fsq.2_5'UTR|INPP5K_uc010cjr.2_5'UTR|INPP5K_uc010vql.1_Intron|INPP5K_uc010vqm.1_Missense_Mutation_p.A67D|INPP5K_uc010cjs.2_Intron	NM_016532	NP_057616	Q9BT40	INP5K_HUMAN	inositol polyphosphate-5-phosphatase K isoform	67	Catalytic (Potential).				actin cytoskeleton organization	cytosol|endoplasmic reticulum|membrane fraction|neuron projection|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol bisphosphate phosphatase activity|inositol bisphosphate phosphatase activity|inositol trisphosphate phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|lipid phosphatase activity|protein binding				0						GTCATTAAAGGCAGCATCGGA	0.512000													13	118					1.52009e-12	1.81696e-12	0.003163	1	0	
RAP1GAP2	23108	broad.mit.edu	37	17	2901595	2901596	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:2901595_2901596GA>TG	uc010ckd.2	+	14	1215_1216	c.1125_1126GA>TG	c.(1123-1128)ATGATA>ATTGTA	p.375_376MI>IV	RAP1GAP2_uc010cke.2_Missense_Mutation_p.360_361MI>IV	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	375_376	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TCCCAGACATGATAGCCTCCAA	0.485000													8	107					0	0	0.004672	0	0	
OR1G1	8390	broad.mit.edu	37	17	3030266	3030266	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:3030266T>G	uc002fvc.1	-	1	580	c.580A>C	c.(580-582)ACC>CCC	p.T194P		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCTCATTGGTGAAGGGGTCT	0.493000													6	90					0	0	0.001168	0	0	
MYH3	4621	broad.mit.edu	37	17	10544004	10544004	+	Splice_Site	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:10544004C>A	uc002gmq.1	-	19	2243	c.2166_splice	c.e19-1	p.R722_splice		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,						muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						cactcggtatctgcattgtag	0.164000													7	32					0.00198382	0.00206512	0.001984	1	0	
DNAH9	1770	broad.mit.edu	37	17	11696840	11696840	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:11696840G>A	uc002gne.2	+	42	8150	c.8082G>A	c.(8080-8082)GTG>GTA	p.V2694V	DNAH9_uc010coo.2_Silent_p.V1988V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2694					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCTCCTCAGTGGAATGTGTGA	0.393000													11	70					0	0	0.008291	0	0	
MYOCD	93649	broad.mit.edu	37	17	12649277	12649277	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:12649277C>A	uc002gnn.2	+	9	1312	c.1013C>A	c.(1012-1014)TCA>TAA	p.S338*	MYOCD_uc002gno.2_Nonsense_Mutation_p.S338*|MYOCD_uc002gnp.1_Nonsense_Mutation_p.S242*|MYOCD_uc002gnq.2_Nonsense_Mutation_p.S57*	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	338					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		AACTCTTCTTCAACGCCACTG	0.423000													13	134					0.00010058	0.000108944	0.013537	1	0	
Unknown	0	broad.mit.edu	37	17	20332209	20332209	+	RNA	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:20332209G>C	uc010cqz.2	+	3		c.729G>C								Homo sapiens cDNA, FLJ17707.																		CCAAAGAGAAGACACTCATAT	0.388000													4	31					0	0	0.001984	0	0	
EVI2B	2124	broad.mit.edu	37	17	29632128	29632128	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:29632128G>A	uc002hgk.2	-	2	655	c.500C>T	c.(499-501)TCC>TTC	p.S167F	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron|EVI2B_uc010csq.2_Missense_Mutation_p.S182F	NM_006495	NP_006486	P34910	EVI2B_HUMAN	ecotropic viral integration site 2B precursor	167	Extracellular (Potential).					cytoplasm|integral to plasma membrane				ovary(2)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;6.88e-13)|Epithelial(4;8.95e-12)|OV - Ovarian serous cystadenocarcinoma(4;1.01e-11)|GBM - Glioblastoma multiforme(4;0.184)		TGGTTGTGTGGATGGATTATG	0.353000													30	211					0	0	0.006320	0	0	
SRCIN1	80725	broad.mit.edu	37	17	36717777	36717777	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:36717777G>A	uc002hqd.2	-	7	1847	c.1622C>T	c.(1621-1623)TCG>TTG	p.S541L	SRCIN1_uc002hqf.1_Missense_Mutation_p.S413L|SRCIN1_uc002hqe.2_Missense_Mutation_p.S395L|SRCIN1_uc002hqg.2_5'Flank|SRCIN1_uc002hqh.1_Missense_Mutation_p.S601L	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	413					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GAAGAGCTCCGAAGGGGGAGC	0.687000													5	18					0	0	0.001168	0	0	
THRA	7067	broad.mit.edu	37	17	38233842	38233842	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:38233842T>C	uc002htw.2	+	4	686	c.203T>C	c.(202-204)ATC>ACC	p.I68T	THRA_uc010cwp.1_Missense_Mutation_p.I68T|THRA_uc002htv.2_Missense_Mutation_p.I68T|THRA_uc002htx.2_Missense_Mutation_p.I68T	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	68	Nuclear receptor.|NR C4-type.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	TACCGCTGTATCACTTGTGAG	0.542000													11	114					0	0	0.001855	0	0	
WIPF2	147179	broad.mit.edu	37	17	38434461	38434461	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:38434461C>A	uc002hug.1	+	8	1547	c.1307C>A	c.(1306-1308)CCA>CAA	p.P436Q	WIPF2_uc002huh.1_Missense_Mutation_p.P286Q|WIPF2_uc010cww.1_Missense_Mutation_p.P286Q|WIPF2_uc002hui.1_Missense_Mutation_p.P436Q|WIPF2_uc010cwx.1_Missense_Mutation_p.P178Q|WIPF2_uc010cwy.1_Missense_Mutation_p.P436Q	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	436						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						CCACCTCTGCCACCCATTCTC	0.502000										HNSCC(43;0.11)			3	25					0.00024832	0.000265572	0.009096	1	0	
CDC6	990	broad.mit.edu	37	17	38450635	38450635	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:38450635T>A	uc002huj.1	+	7	1173	c.963T>A	c.(961-963)GAT>GAA	p.D321E		NM_001254	NP_001245	Q99741	CDC6_HUMAN	cell division cycle 6 protein	321					cell division|DNA replication|DNA replication checkpoint|M/G1 transition of mitotic cell cycle|mitosis|negative regulation of cell proliferation|negative regulation of DNA replication|positive regulation of cell cycle cytokinesis|positive regulation of chromosome segregation|regulation of cyclin-dependent protein kinase activity|regulation of mitotic anaphase|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm|spindle midzone|spindle pole	ATP binding|kinase binding|nucleoside-triphosphatase activity			ovary(2)|breast(1)	3						ATACCCTGGATCTCACAGATA	0.363000													7	75					0	0	0.003080	0	0	
KRT12	3859	broad.mit.edu	37	17	39019794	39019794	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:39019794G>A	uc002hvk.2	-	5	1062	c.1038C>T	c.(1036-1038)ACC>ACT	p.T346T		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	346	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				GACGCAGGTCGGTGACCTCGC	0.592000													6	81					0	0	0.001168	0	0	
KRT20	54474	broad.mit.edu	37	17	39041093	39041093	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:39041093G>A	uc002hvl.2	-	1	387	c.345C>T	c.(343-345)CGC>CGT	p.R115R		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	115	Rod.|Linker 1.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				CACTGTAGTCGCGACCAGCCC	0.483000													6	68					0	0	0.001168	0	0	
KRT19	3880	broad.mit.edu	37	17	39684234	39684234	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:39684234T>A	uc002hxd.3	-	1	408	c.266A>T	c.(265-267)GAC>GTC	p.D89V	JUP_uc010wfs.1_Intron	NM_002276	NP_002267	P08727	K1C19_HUMAN	keratin 19	89	Coil 1A.|Rod.				interspecies interaction between organisms|response to estrogen stimulus|sarcomere organization	costamere|intermediate filament	protein binding|structural constituent of cytoskeleton|structural constituent of muscle				0		Breast(137;0.00038)				GGCCAGGCGGTCGTTGAGGTT	0.692000													9	132					0	0	0.004482	0	0	
KRT16	3868	broad.mit.edu	37	17	39767353	39767353	+	Missense_Mutation	SNP	G	T	T	rs140428349		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:39767353G>T	uc002hxg.3	-	4	1040	c.901C>A	c.(901-903)CGC>AGC	p.R301S	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	301	Rod.|Coil 2.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCGTCTCTGCGGTTTTTCTCT	0.607000													19	225					1.00905e-13	1.21181e-13	0.008871	1	0	
EIF1	10209	broad.mit.edu	37	17	39846155	39846155	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:39846155G>T	uc002hxj.2	+	2	321	c.157G>T	c.(157-159)GAT>TAT	p.D53Y	JUP_uc010wfs.1_Intron|EIF1_uc002hxk.2_Intron	NM_005801	NP_005792	P41567	EIF1_HUMAN	eukaryotic translation initiation factor 1	53					regulation of translational initiation|response to stress	cytoplasm	translation initiation factor activity				0		Breast(137;0.000307)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			GATCGCTGATGATTACGATAA	0.433000											OREG0024409	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	111					0.000566183	0.000601718	0.004990	1	0	
CNP	1267	broad.mit.edu	37	17	40125917	40125917	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:40125917C>G	uc002hyl.1	+	4	1385	c.1241C>G	c.(1240-1242)GCC>GGC	p.A414G	CNP_uc010wfz.1_Missense_Mutation_p.A291G|CNP_uc002hym.1_Missense_Mutation_p.A394G|CNP_uc010wga.1_Missense_Mutation_p.A179G|CNP_uc002hyn.1_Missense_Mutation_p.A179G	NM_033133	NP_149124	P09543	CN37_HUMAN	2',3'-cyclic nucleotide 3' phosphodiesterase	414					cell killing|cyclic nucleotide catabolic process|RNA metabolic process|synaptic transmission	extracellular space|melanosome	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity|ATP binding|protein binding				0		all_cancers(22;2.38e-06)|all_epithelial(22;6.79e-05)|Breast(137;0.000143)		UCEC - Uterine corpus endometrioid carcinoma (308;0.171)		AAGGGGGGCGCCTTGCAGTCC	0.567000													6	37					0	0	0.001168	0	0	
LOC90586	90586	broad.mit.edu	37	17	41019545	41019545	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:41019545G>C	uc002ibw.1	+	1	384	c.250G>C	c.(250-252)GAT>CAT	p.D84H	LOC90586_uc002ibx.2_5'Flank	NR_002773				Homo sapiens amine oxidase pseudogene mRNA, splice variant HLAO1.												0						AGGGCTGGTGGATGCAGCCCA	0.652000													13	228					0	0	0.003163	0	0	
NFE2L1	4779	broad.mit.edu	37	17	46136555	46136555	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:46136555C>G	uc002imz.3	+	6	2522	c.1871C>G	c.(1870-1872)CCT>CGT	p.P624R	NFE2L1_uc002ina.3_Missense_Mutation_p.P594R|NFE2L1_uc002inb.3_Missense_Mutation_p.P594R|NFE2L1_uc010wle.1_Missense_Mutation_p.P436R|NFE2L1_uc010wlf.1_Missense_Mutation_p.P468R	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	624					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						ATGAAGATCCCTTTCACCAAT	0.542000													6	69					0	0	0.001168	0	0	
C17orf71	55181	broad.mit.edu	37	17	57290168	57290168	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:57290168C>T	uc002ixi.2	+	3	2026	c.1984C>T	c.(1984-1986)CCT>TCT	p.P662S		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	662					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AGATCCTGCTCCTGCTAAAAA	0.403000													21	200					0	0	0.014323	0	0	
GNA13	10672	broad.mit.edu	37	17	63010790	63010790	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:63010790A>G	uc002jfc.2	-	4	928	c.719T>C	c.(718-720)GTG>GCG	p.V240A	GNA13_uc010wqh.1_Missense_Mutation_p.V145A	NM_006572	NP_006563	Q14344	GNA13_HUMAN	guanine nucleotide binding protein (G protein),	240					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase D activity|cellular component movement|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex|melanosome	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity|type 1 angiotensin receptor binding				0						TATTGATGTCACACTGTCGAA	0.378000													13	115					0	0	0.013537	0	0	
CCDC46	201134	broad.mit.edu	37	17	64092744	64092744	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr17:64092744T>A	uc002jfl.2	-	7	868	c.649A>T	c.(649-651)AAT>TAT	p.N217Y	CCDC46_uc002jfm.2_Missense_Mutation_p.N217Y|CCDC46_uc010dep.2_Intron	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	217						centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			TATCGAGGATTTTCTATCTGa	0.239000													4	48					0	0	0.000602	0	0	
IMPA2	3613	broad.mit.edu	37	18	12009979	12009979	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr18:12009979G>C	uc002kqp.1	+	3	542	c.328G>C	c.(328-330)GTG>CTG	p.V110L	IMPA2_uc002kqo.1_5'UTR|IMPA2_uc010dlb.1_Missense_Mutation_p.V94L|IMPA2_uc002kqq.1_5'UTR	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	110					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	CTGCAATTTTGTGCACAGGTG	0.542000													12	93					0	0	0.010729	0	0	
DSG4	147409	broad.mit.edu	37	18	28968948	28968948	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr18:28968948T>G	uc002kwq.2	+	5	619	c.484T>G	c.(484-486)TAC>GAC	p.Y162D	DSG4_uc002kwr.2_Missense_Mutation_p.Y162D	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	162	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GCAAAGTGTATACACAGCCAG	0.408000													9	83					0	0	0.008291	0	0	
CELF4	56853	broad.mit.edu	37	18	35145451	35145451	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr18:35145451C>G	uc002lae.2	-	1	550	c.154G>C	c.(154-156)GAT>CAT	p.D52H	CELF4_uc010dnd.1_Missense_Mutation_p.D52H|CELF4_uc002lag.2_Missense_Mutation_p.D52H|CELF4_uc002laf.2_Missense_Mutation_p.D48H|CELF4_uc002lai.2_Missense_Mutation_p.D48H	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	52	Sufficient for RNA-binding and MSE- dependent splicing activity.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						TTGATGGCATCGTGGTCCTTC	0.592000													4	49					0	0	0.009096	0	0	
SMAD4	4089	broad.mit.edu	37	18	48591892	48591892	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr18:48591892G>C	uc010xdp.1	+	9	1593	c.1055G>C	c.(1054-1056)GGA>GCA	p.G352A	SMAD4_uc002lfb.3_Missense_Mutation_p.G197A	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	352	MH2.		G -> R (in JP/HHT and JPS).		BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(2)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		ACTGTTGATGGATACGTGGAC	0.443000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				6	80					0	0	0.001984	0	0	
FUT5	2527	broad.mit.edu	37	19	5866954	5866954	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:5866954C>G	uc002mdo.3	-	2	871	c.783G>C	c.(781-783)GAG>GAC	p.E261D	FUT5_uc010duo.2_Missense_Mutation_p.E261D	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	261	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						GCAAGGAGTTCTCGAAGGCCA	0.622000													13	61					0	0	0.003163	0	0	
MUC16	94025	broad.mit.edu	37	19	9011337	9011337	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:9011337T>A	uc002mkp.2	-	36	39100	c.38896A>T	c.(38896-38898)AGT>TGT	p.S12966C	MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12968	SEA 6.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACATAGAGACTGTTCCTGTCC	0.557000													17	205					0	0	0.007413	0	0	
MUC16	94025	broad.mit.edu	37	19	9046424	9046424	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:9046424G>A	uc002mkp.2	-	5	35411	c.35207C>T	c.(35206-35208)TCA>TTA	p.S11736L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11738	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCACCAGGTGAGATTGTTGT	0.493000													9	76					0	0	0.004482	0	0	
ATG4D	84971	broad.mit.edu	37	19	10657566	10657566	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:10657566C>T	uc002mov.2	+	4	665	c.545C>T	c.(544-546)TCA>TTA	p.S182L	ATG4D_uc010xlg.1_Missense_Mutation_p.S205L|ATG4D_uc010xlh.1_Missense_Mutation_p.S119L|ATG4D_uc010dxh.2_RNA|ATG4D_uc010dxi.2_Intron|ATG4D_uc010dxj.2_Intron	NM_032885	NP_116274	Q86TL0	ATG4D_HUMAN	APG4 autophagy 4 homolog D	182					autophagy|protein transport	cytoplasm	cysteine-type endopeptidase activity				0			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			CTGTCAGGGTCAGCCTCTCCC	0.677000													4	31					0	0	0.009096	0	0	
OR10H1	26539	broad.mit.edu	37	19	15918371	15918371	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:15918371C>G	uc002nbq.2	-	1	566	c.477G>C	c.(475-477)GTG>GTC	p.V159V		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCCGAGGTCACCACCATCC	0.617000													6	50					0	0	0.001168	0	0	
SFRS14	10147	broad.mit.edu	37	19	19135888	19135888	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:19135888C>G	uc002nkx.2	-	3	1415	c.1269G>C	c.(1267-1269)AAG>AAC	p.K423N	SFRS14_uc002nkz.1_Missense_Mutation_p.K437N|SFRS14_uc002nla.1_Missense_Mutation_p.K423N|SFRS14_uc002nlb.2_Missense_Mutation_p.K423N|SFRS14_uc010xqk.1_Missense_Mutation_p.K192N	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	423					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			TGTCAAAAGGCTTTATGATTT	0.388000													7	112					0	0	0.001984	0	0	
NDUFA13	51079	broad.mit.edu	37	19	19626962	19626962	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:19626962C>T	uc010xqy.1	+	1	423	c.164C>T	c.(163-165)ACC>ATC	p.T55I	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.T55I|NDUFA13_uc010xqx.1_Missense_Mutation_p.T55I	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	GTGCCGCGGACCATCTCAAGT	0.632000													8	37					0	0	0.004482	0	0	
TSHZ3	57616	broad.mit.edu	37	19	31767827	31767827	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:31767827G>T	uc002nsy.3	-	2	2937	c.2872C>A	c.(2872-2874)CGA>AGA	p.R958R		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	958	Homeobox; atypical.				negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					CCTGTCCTTCGAAGCTGGTAT	0.542000													5	69					0.00116845	0.00122638	0.001168	1	0	
ANKRD27	84079	broad.mit.edu	37	19	33140660	33140660	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:33140660G>C	uc002ntn.1	-	3	297	c.141C>G	c.(139-141)ATC>ATG	p.I47M	ANKRD27_uc002nto.1_Missense_Mutation_p.I47M	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	47					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					AAGTAGACTGGATGCTGCTCG	0.448000													16	165					0	0	0.003163	0	0	
NPHS1	4868	broad.mit.edu	37	19	36336428	36336428	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:36336428G>C	uc002oby.2	-	14	1772	c.1772C>G	c.(1771-1773)GCC>GGC	p.A591G		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	591	Ig-like C2-type 6.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGTGGGGCGGCCACGCCCTC	0.716000													4	7					0	0	0.009096	0	0	
LRFN3	79414	broad.mit.edu	37	19	36430947	36430947	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:36430947C>A	uc002oco.2	+	2	1072	c.620C>A	c.(619-621)GCC>GAC	p.A207D		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	207	Extracellular (Potential).|LRR 7.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CACAAGCTGGCCCGGCTGGAC	0.701000													11	145					5.50884e-06	6.15053e-06	0.013537	1	0	
ZNF793	390927	broad.mit.edu	37	19	38028263	38028263	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:38028263G>C	uc010efm.2	+	8	1145	c.703G>C	c.(703-705)GCC>CCC	p.A235P	ZNF793_uc010xts.1_Missense_Mutation_p.A235P|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	235	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GTGTGGGAAAGCCTTCTGCTA	0.463000													5	16					0	0	0.001168	0	0	
ZFP30	22835	broad.mit.edu	37	19	38126854	38126854	+	Silent	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:38126854T>C	uc002ogv.1	-	6	1104	c.588A>G	c.(586-588)AGA>AGG	p.R196R	ZFP30_uc002ogw.1_Silent_p.R196R|ZFP30_uc002ogx.1_Silent_p.R196R|ZFP30_uc010xtt.1_Silent_p.R195R	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	196	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGGCACACTGTCTAAAGGCTT	0.398000													7	100					0	0	0.003080	0	0	
RYR1	6261	broad.mit.edu	37	19	38946294	38946294	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:38946294G>T	uc002oit.2	+	16	1824	c.1694G>T	c.(1693-1695)TGT>TTT	p.C565F	RYR1_uc002oiu.2_Missense_Mutation_p.C565F	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	565	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GTCCTGTACTGTGTCCTCATT	0.572000													7	54					8.12818e-05	8.84179e-05	0.001984	1	0	
LTBP4	8425	broad.mit.edu	37	19	41117887	41117887	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:41117887G>A	uc002ooh.1	+	17	2377	c.2377G>A	c.(2377-2379)GAG>AAG	p.E793K	LTBP4_uc002oog.1_Missense_Mutation_p.E756K|LTBP4_uc002ooi.1_Missense_Mutation_p.E726K|LTBP4_uc002ooj.1_5'UTR|LTBP4_uc010xvo.1_Intron|LTBP4_uc010ehb.1_Missense_Mutation_p.E13K|LTBP4_uc002ook.1_Missense_Mutation_p.E13K|LTBP4_uc002ool.1_5'Flank|LTBP4_uc002oom.1_5'Flank|LTBP4_uc010xvp.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	793	Cys-rich.|EGF-like 8; calcium-binding (Potential).				growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTCCGAGTGCGAGGGTGAGGC	0.652000													4	22					0	0	0.000602	0	0	
CYP2F1	1572	broad.mit.edu	37	19	41622244	41622244	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:41622244A>C	uc002opu.1	+	2	207	c.151A>C	c.(151-153)ATG>CTG	p.M51L	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Missense_Mutation_p.M51L|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	51					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CTCCCAAGACATGCTGACTTC	0.567000													32	276					0	0	0.013726	0	0	
AXL	558	broad.mit.edu	37	19	41749531	41749531	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:41749531G>C	uc010ehj.2	+	12	1646	c.1456G>C	c.(1456-1458)GAA>CAA	p.E486Q	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.E486Q|AXL_uc010ehk.2_Missense_Mutation_p.E477Q	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	486	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						AGAAGTGTTTGAACCAACAGT	0.557000													11	143					0	0	0.008291	0	0	
BCKDHA	593	broad.mit.edu	37	19	41884322	41884322	+	Silent	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:41884322A>G	uc002oqm.3	+	2	459	c.108A>G	c.(106-108)AGA>AGG	p.R36R	CYP2F1_uc010xvw.1_Intron|TMEM91_uc002oqi.2_Silent_p.R36R|TMEM91_uc010ehq.2_Silent_p.R36R|TMEM91_uc002oql.2_Silent_p.R36R|TMEM91_uc010ehr.2_Silent_p.R36R|TMEM91_uc010ehs.2_Silent_p.R36R|TMEM91_uc010eht.2_Silent_p.R36R|TMEM91_uc002oqk.3_Silent_p.R36R|TMEM91_uc002oqn.2_Silent_p.R36R	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	Error:Variant_position_missing_in_P12694_after_alignment					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CCCCCTTAAGAGAGATAGCCT	0.617000													11	96					0	0	0.010729	0	0	
PSG7	5676	broad.mit.edu	37	19	43430815	43430815	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:43430815T>C	uc002ovl.3	-	5	865	c.763A>G	c.(763-765)AAG>GAG	p.K255E	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.K133E	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	255	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GAGACATCCTTATTCTCCCTG	0.483000													36	311					0	0	0.013726	0	0	
RELB	5971	broad.mit.edu	37	19	45540843	45540843	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:45540843C>G	uc002paj.1	+	13	1661	c.1535C>G	c.(1534-1536)GCT>GGT	p.A512G	SFRS16_uc002pak.2_5'Flank|SFRS16_uc002pal.2_5'Flank|SFRS16_uc010xxh.1_5'Flank|SFRS16_uc002pam.2_5'Flank|SFRS16_uc002pan.1_5'Flank	NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	512						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		CCGCCACACGCTAGCGCTGTT	0.706000													7	29					0	0	0.003080	0	0	
OPA3	80207	broad.mit.edu	37	19	46056952	46056952	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:46056952G>A	uc002pck.3	-	2	460	c.360C>T	c.(358-360)AAC>AAT	p.N120N	OPA3_uc002pcj.3_Intron|OPA3_uc010xxk.1_Silent_p.N67N	NM_025136	NP_079412	Q9H6K4	OPA3_HUMAN	OPA3 protein isoform b	120	Potential.				response to stimulus|visual perception	mitochondrion					0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00778)|GBM - Glioblastoma multiforme(486;0.0976)|Epithelial(262;0.242)		CCCGCAGCGCGTTCCAGGCAG	0.721000													6	18					0	0	0.001168	0	0	
NOVA2	4858	broad.mit.edu	37	19	46457192	46457192	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:46457192C>T	uc002pdv.2	-	3	290	c.242G>A	c.(241-243)CGG>CAG	p.R81Q		NM_002516	NP_002507	Q9UNW9	NOVA2_HUMAN	neuro-oncological ventral antigen 2	81	KH 1.					nucleus	RNA binding				0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00245)|GBM - Glioblastoma multiforme(486;0.0782)|Epithelial(262;0.179)		TAGGCATACCCGCTCTGTGGT	0.443000													7	85					0	0	0.001984	0	0	
SLC6A16	28968	broad.mit.edu	37	19	49812135	49812135	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:49812135C>G	uc002pmz.2	-	7	1461	c.1227G>C	c.(1225-1227)GAG>GAC	p.E409D	SLC6A16_uc002pna.2_Missense_Mutation_p.E409D|hsa-mir-4324|MI0015854_5'Flank	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	409	Extracellular (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		GGCCTTACCTCTCACAGCAGC	0.493000													9	113					0	0	0.008291	0	0	
IL4I1	259307	broad.mit.edu	37	19	50397628	50397628	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:50397628C>T	uc002pqt.1	-	5	542	c.464G>A	c.(463-465)CGC>CAC	p.R155H	IL4I1_uc002pqv.1_Missense_Mutation_p.R164H|IL4I1_uc010eno.1_Missense_Mutation_p.R163H|IL4I1_uc002pqw.1_Missense_Mutation_p.R163H|IL4I1_uc002pqu.1_Missense_Mutation_p.R177H	NM_152899	NP_690863	Q96RQ9	OXLA_HUMAN	interleukin 4 induced 1 isoform 1 precursor	155						lysosome	L-amino-acid oxidase activity			lung(1)|ovary(1)|prostate(1)	3		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00245)|OV - Ovarian serous cystadenocarcinoma(262;0.0169)		CACATAGTTGCGCAGCTTCAC	0.592000													5	61					0	0	0.001168	0	0	
SIGLEC16	400709	broad.mit.edu	37	19	50473221	50473221	+	RNA	SNP	T	C	C	rs117072442	by1000genomes	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:50473221T>C	uc002prf.2	+	2		c.240T>C			SIGLEC16_uc010ybj.1_5'Flank|uc010ybk.1_5'Flank	NR_002825				Homo sapiens cDNA FLJ50062 complete cds, highly similar to Sialic acid-binding Ig-like lectin 11 precursor.												0						GTTCAAAGGATGGACCAGCCC	0.602000													4	46					0	0	0.009096	0	0	
ZNF473	25888	broad.mit.edu	37	19	50548172	50548172	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:50548172C>T	uc002prn.2	+	5	709	c.472C>T	c.(472-474)CCT>TCT	p.P158S	ZNF473_uc002prm.2_Missense_Mutation_p.P158S|ZNF473_uc010ybo.1_Missense_Mutation_p.P146S	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	158					histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		AGGACTCAGTCCTGTGTCCAC	0.463000													8	58					0	0	0.003080	0	0	
POLD1	5424	broad.mit.edu	37	19	50910318	50910318	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:50910318C>T	uc002psb.3	+	13	1629	c.1573C>T	c.(1573-1575)CGG>TGG	p.R525W	POLD1_uc002psc.3_Missense_Mutation_p.R525W|POLD1_uc010enx.2_RNA|POLD1_uc010eny.2_Missense_Mutation_p.R525W	NM_002691	NP_002682	P28340	DPOD1_HUMAN	DNA-directed DNA polymerase delta 1	525					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|DNA synthesis involved in DNA repair|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|response to UV|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm|nucleotide-excision repair complex	3'-5'-exodeoxyribonuclease activity|chromatin binding|DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding|protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2		all_neural(266;0.0571)		OV - Ovarian serous cystadenocarcinoma(262;0.00794)|GBM - Glioblastoma multiforme(134;0.0195)		GCTGCTGGAGCGGCTCATGGT	0.582000								DNA_polymerases_(catalytic_subunits)					9	78					0	0	0.006214	0	0	
MYBPC2	4606	broad.mit.edu	37	19	50957402	50957402	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:50957402C>G	uc002psf.2	+	17	1926	c.1875C>G	c.(1873-1875)GGC>GGG	p.G625G		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	625	Ig-like C2-type 5.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		ACCCCGTCGGCGAGGACGTGG	0.632000													3	21					0	0	0.004672	0	0	
ZNF615	284370	broad.mit.edu	37	19	52496905	52496905	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:52496905T>G	uc002pye.1	-	6	1716	c.1424A>C	c.(1423-1425)CAG>CCG	p.Q475P	ZNF615_uc002pyf.1_Missense_Mutation_p.Q486P|ZNF615_uc002pyg.1_Missense_Mutation_p.Q367P|ZNF615_uc002pyh.1_Missense_Mutation_p.Q486P|ZNF615_uc010epi.1_Missense_Mutation_p.Q482P|ZNF615_uc010ydg.1_Missense_Mutation_p.Q480P	NM_198480	NP_940882	Q8N8J6	ZN615_HUMAN	zinc finger protein 615	475	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		ATGAGTTCGCTGATGTACAAT	0.448000													6	51					0	0	0.001168	0	0	
ZNF614	80110	broad.mit.edu	37	19	52520497	52520497	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:52520497C>G	uc002pyj.2	-	5	756	c.354G>C	c.(352-354)AAG>AAC	p.K118N	ZNF614_uc002pyi.3_Missense_Mutation_p.K118N|ZNF614_uc010epj.2_5'UTR	NM_025040	NP_079316	Q8N883	ZN614_HUMAN	zinc finger protein 614	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	5		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00513)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GAAAATGTGTCTTGCTGAGAT	0.358000													5	47					0	0	0.000602	0	0	
ZNF320	162967	broad.mit.edu	37	19	53384030	53384030	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:53384030A>G	uc002qag.2	-	4	1540	c.1349T>C	c.(1348-1350)TTT>TCT	p.F450S	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.F396S|ZNF320_uc002qai.2_Missense_Mutation_p.F450S	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	450	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		AGGTGAATTAAAGGCTTTACC	0.408000													9	82					0	0	0.004482	0	0	
ZNF665	79788	broad.mit.edu	37	19	53668165	53668165	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:53668165A>T	uc010eqm.1	-	4	1678	c.1578T>A	c.(1576-1578)CAT>CAA	p.H526Q		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	461	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TTAGGCTTGAATGAACACTAA	0.393000													12	168					0	0	0.013537	0	0	
ZSCAN18	65982	broad.mit.edu	37	19	58596573	58596573	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr19:58596573G>C	uc002qri.2	-	7	1321	c.1012C>G	c.(1012-1014)CCC>GCC	p.P338A	ZSCAN18_uc002qrj.3_Missense_Mutation_p.P337A|ZSCAN18_uc010yhs.1_Missense_Mutation_p.P202A|ZSCAN18_uc002qrh.2_Missense_Mutation_p.P338A|ZSCAN18_uc010yht.1_Missense_Mutation_p.P394A|ZSCAN18_uc002qrk.1_3'UTR|ZSCAN18_uc002qrl.2_3'UTR	NM_001145543	NP_001139015	Q8TBC5	ZSC18_HUMAN	zinc finger and SCAN domain containing 18	338					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.114)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		GCGTCCTGGGGGTCCTGCGGG	0.711000													4	23					0	0	0.009096	0	0	
CALM2	805	broad.mit.edu	37	2	47389473	47389473	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:47389473G>T	uc002rvt.2	-	4	395	c.237C>A	c.(235-237)GAC>GAA	p.D79E	C2orf61_uc010fbd.2_Intron|CALM2_uc010fbe.2_Intron	NM_001743	NP_001734	P62158	CALM_HUMAN	calmodulin 2	79	EF-hand 2.				activation of phospholipase C activity|G-protein coupled receptor protein signaling pathway|glucose metabolic process|glycogen catabolic process|muscle contraction|negative regulation of ryanodine-sensitive calcium-release channel activity|nerve growth factor receptor signaling pathway|nitric oxide metabolic process|platelet activation|platelet degranulation|positive regulation of ryanodine-sensitive calcium-release channel activity|regulation of cytokinesis|regulation of nitric-oxide synthase activity|regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to calcium ion|synaptic transmission	centrosome|cytosol|extracellular region|nucleoplasm|plasma membrane|spindle microtubule|spindle pole	calcium ion binding|N-terminal myristoylation domain binding|phospholipase binding|protein domain specific binding|thioesterase binding|titin binding	p.0?(2)			0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)		Aprindine(DB01429)|Bepridil(DB01244)|Dibucaine(DB00527)|Felodipine(DB01023)|Flunarizine(DB04841)|Fluphenazine(DB00623)|Isoflurane(DB00753)|Loperamide(DB00836)|Miconazole(DB01110)|Perphenazine(DB00850)|Phenoxybenzamine(DB00925)|Pimozide(DB01100)|Promethazine(DB01069)	CACTGTCTGTGTCTTTCATTT	0.368000													9	46					7.48243e-07	8.52259e-07	0.006214	1	0	
NRXN1	9378	broad.mit.edu	37	2	50318609	50318609	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:50318609C>T	uc010fbp.2	-	3	1272	c.465G>A	c.(463-465)AAG>AAA	p.K155K	NRXN1_uc002rxb.3_Silent_p.K862K|NRXN1_uc010fbq.2_Silent_p.K1230K|NRXN1_uc002rxe.3_Silent_p.K1190K	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	155	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CAACATTAAACTTAACTCCAA	0.378000													8	99					0	0	0.006214	0	0	
CLEC4F	165530	broad.mit.edu	37	2	71039583	71039583	+	Missense_Mutation	SNP	T	A	A	rs145897327	byFrequency	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:71039583T>A	uc002shf.2	-	5	1612	c.1535A>T	c.(1534-1536)GAG>GTG	p.E512V	CLEC4F_uc010yqv.1_Missense_Mutation_p.E512V	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	512	Extracellular (Potential).|C-type lectin.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						TCTGACCTGCTCCTCCTTGGA	0.522000													5	80					0	0	0.000602	0	0	
RTKN	6242	broad.mit.edu	37	2	74659594	74659594	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:74659594C>T	uc002sle.2	-	2	428	c.311G>A	c.(310-312)CGG>CAG	p.R104Q	RTKN_uc002slc.2_Missense_Mutation_p.R91Q|RTKN_uc002sld.2_Missense_Mutation_p.R54Q|RTKN_uc010ffe.1_Intron|RTKN_uc010fff.1_Missense_Mutation_p.R91Q|RTKN_uc010ffg.1_Missense_Mutation_p.R104Q	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	104					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						CCTTGCTCACCGCCGGCTTGT	0.637000													7	98					0	0	0.003080	0	0	
Unknown	0	broad.mit.edu	37	2	89545052	89545052	+	RNA	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:89545052T>A	uc010ytr.1	-	13		c.1559A>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGCCTCATTGTGAGAAGGTGA	0.512000													4	48					0	0	0.001984	0	0	
CNGA3	1261	broad.mit.edu	37	2	99013226	99013226	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:99013226T>A	uc002syt.2	+	8	2010	c.1593T>A	c.(1591-1593)GCT>GCA	p.A531A	CNGA3_uc002syu.2_Silent_p.A513A|CNGA3_uc010fij.2_Silent_p.A535A	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	531	cGMP.				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCGTGGTGGCTGATGATGGGG	0.557000													13	135					0	0	0.013537	0	0	
AFF3	3899	broad.mit.edu	37	2	100185340	100185340	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:100185340G>C	uc002tag.2	-	18	3192	c.2956C>G	c.(2956-2958)CGA>GGA	p.R986G	AFF3_uc002taf.2_Missense_Mutation_p.R1011G	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	986					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGCTTCATTCGTTTAGCTTCT	0.378000													8	125					0	0	0.006214	0	0	
ST6GAL2	84620	broad.mit.edu	37	2	107460196	107460196	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:107460196G>T	uc002tdq.2	-	2	357	c.238C>A	c.(238-240)CTG>ATG	p.L80M	ST6GAL2_uc002tdr.2_Missense_Mutation_p.L80M|ST6GAL2_uc002tds.3_Missense_Mutation_p.L80M	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	80	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GCGCGGGGCAGCGCCTGGCGT	0.662000													5	36					0.000602214	0.000636019	0.000602	1	0	
RANBP2	5903	broad.mit.edu	37	2	109389389	109389389	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:109389389G>C	uc002tem.3	+	23	8305	c.8179G>C	c.(8179-8181)GAT>CAT	p.D2727H		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2727	Interaction with SUMO1.|2 X 50 AA approximate repeats.|2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GGCAAAAGCAGATACGTTAAA	0.348000													4	39					0	0	0.000602	0	0	
BUB1	699	broad.mit.edu	37	2	111395577	111395577	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:111395577A>C	uc002tgc.2	-	25	3334	c.3222T>G	c.(3220-3222)ATT>ATG	p.I1074M	BUB1_uc010yxh.1_Missense_Mutation_p.I1054M|BUB1_uc010fkb.2_Missense_Mutation_p.I1017M	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	1074	Protein kinase.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		AGAGCAGTACAATTAGCCTAT	0.343000													6	69					0	0	0.001984	0	0	
RIF1	55183	broad.mit.edu	37	2	152320512	152320512	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:152320512C>G	uc002txm.2	+	30	4608	c.4478C>G	c.(4477-4479)ACT>AGT	p.T1493S	RIF1_uc002txl.2_Missense_Mutation_p.T1493S|RIF1_uc002txn.2_Missense_Mutation_p.T1493S|RIF1_uc002txo.2_Missense_Mutation_p.T1493S|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1493					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		CTTGGGGAAACTAGTGCTAAT	0.378000													9	78					0	0	0.004482	0	0	
SCN3A	6328	broad.mit.edu	37	2	165987898	165987898	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:165987898C>G	uc002ucx.2	-	16	2913	c.2421G>C	c.(2419-2421)ATG>ATC	p.M807I	SCN3A_uc002ucy.2_Missense_Mutation_p.M758I|SCN3A_uc002ucz.2_Missense_Mutation_p.M758I|SCN3A_uc002uda.1_Missense_Mutation_p.M627I|SCN3A_uc002udb.1_Missense_Mutation_p.M627I	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	807	Helical; Name=S2 of repeat II; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TCTTGAGAACCATTTCTGCTG	0.373000													6	52					0	0	0.001984	0	0	
SCN2A	6326	broad.mit.edu	37	2	166201292	166201292	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:166201292C>A	uc002udc.2	+	16	3080	c.2790C>A	c.(2788-2790)CAC>CAA	p.H930Q	SCN2A_uc002udd.2_Missense_Mutation_p.H930Q|SCN2A_uc002ude.2_Missense_Mutation_p.H930Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	930	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ACTTTTTCCACTCCTTCCTGA	0.502000													18	149					2.94398e-08	3.39896e-08	0.007413	1	0	
PHOSPHO2	493911	broad.mit.edu	37	2	170558070	170558070	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:170558070A>T	uc002ufg.2	+	4	977	c.589A>T	c.(589-591)ATG>TTG	p.M197L	KLHL23_uc002ufh.1_Intron	NM_001008489	NP_001008489	Q8TCD6	PHOP2_HUMAN	phosphatase, orphan 2	197							metal ion binding|pyridoxal phosphatase activity			skin(1)	1						TGATGTTGCCATGCCACGGAA	0.378000													13	102					0	0	0.001855	0	0	
DCAF17	80067	broad.mit.edu	37	2	172337582	172337582	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:172337582T>G	uc002ugx.2	+	14	1750	c.1521T>G	c.(1519-1521)TGT>TGG	p.C507W	DCAF17_uc010zdq.1_RNA|DCAF17_uc010zdr.1_RNA|DCAF17_uc010fqg.2_Missense_Mutation_p.C227W	NM_025000	NP_079276	Q5H9S7	DCA17_HUMAN	DDB1 and CUL4 associated factor 17 isoform 1	507						CUL4 RING ubiquitin ligase complex|integral to membrane|nucleolus					0						AGATGATATGTGACACTGGGG	0.418000													27	97					0	0	0.007291	0	0	
DLX1	1745	broad.mit.edu	37	2	172950413	172950413	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:172950413T>A	uc002uhl.2	+	1	206	c.8T>A	c.(7-9)ATG>AAG	p.M3K	DLX1_uc010fqj.1_Missense_Mutation_p.M3K|DLX1_uc002uhm.2_Missense_Mutation_p.M3K	NM_178120	NP_835221	P56177	DLX1_HUMAN	distal-less homeobox 1 isoform 1	3						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)			GAGATGACCATGACCACCATG	0.547000													9	119					0	0	0.008291	0	0	
TTC30A	92104	broad.mit.edu	37	2	178481441	178481441	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:178481441C>G	uc002ulo.2	-	1	2254	c.1989G>C	c.(1987-1989)TGG>TGC	p.W663C		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	663					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			ACTACTTATTCCATCCTATAA	0.348000													7	115					0	0	0.003080	0	0	
SSFA2	6744	broad.mit.edu	37	2	182763743	182763743	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:182763743A>T	uc002uoi.2	+	6	729	c.407A>T	c.(406-408)AAT>ATT	p.N136I	SSFA2_uc002uoh.2_Missense_Mutation_p.N136I|SSFA2_uc002uoj.2_Missense_Mutation_p.N136I|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_5'UTR|SSFA2_uc002uol.2_5'UTR	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	136						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GTTCGTAGCAATAATATCTTG	0.313000													18	82					0	0	0.006122	0	0	
PMS1	5378	broad.mit.edu	37	2	190742011	190742011	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:190742011G>A	uc002urh.3	+	13	3177	c.2648G>A	c.(2647-2649)CGT>CAT	p.R883H	PMS1_uc002urk.3_Missense_Mutation_p.R844H|PMS1_uc002uri.3_Missense_Mutation_p.R721H|PMS1_uc010zgc.1_Missense_Mutation_p.R707H|PMS1_uc010zgd.1_Missense_Mutation_p.R707H|PMS1_uc002urj.2_RNA|PMS1_uc010frz.2_Missense_Mutation_p.R199H|PMS1_uc002url.2_Missense_Mutation_p.R506H|PMS1_uc002urm.2_RNA	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	883					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			GAAGCAGTGCGTCTATCCAGA	0.388000			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR					8	56					0	0	0.003080	0	0	
MYO1B	4430	broad.mit.edu	37	2	192141703	192141703	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:192141703G>A	uc010fsg.2	+	2	337	c.82G>A	c.(82-84)GAG>AAG	p.E28K	MYO1B_uc002usq.2_Missense_Mutation_p.E28K|MYO1B_uc002usr.2_Missense_Mutation_p.E28K|MYO1B_uc002uss.1_Missense_Mutation_p.E28K	NM_001130158	NP_001123630	O43795	MYO1B_HUMAN	myosin IB isoform 1	28	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(5)|large_intestine(2)|ovary(1)	8			OV - Ovarian serous cystadenocarcinoma(117;0.0112)|Epithelial(96;0.104)|all cancers(119;0.236)			ACCTCTCAATGAGGAGACCTT	0.418000													8	106					0	0	0.006214	0	0	
ABCA12	26154	broad.mit.edu	37	2	215866456	215866456	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:215866456G>C	uc002vew.2	-	21	2909	c.2689C>G	c.(2689-2691)CTA>GTA	p.L897V	ABCA12_uc002vev.2_Missense_Mutation_p.L579V|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	897					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTCAGTCTTAGAATATCTAAA	0.313000													12	48					0	0	0.013537	0	0	
PECR	55825	broad.mit.edu	37	2	216930156	216930156	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:216930156G>A	uc002vft.2	-	3	371	c.303C>T	c.(301-303)ATC>ATT	p.I101I	PECR_uc010zjq.1_RNA|PECR_uc002vfr.2_5'UTR|PECR_uc002vfs.2_5'UTR|PECR_uc002vfu.1_Silent_p.I120I	NM_018441	NP_060911	Q9BY49	PECR_HUMAN	peroxisomal trans-2-enoyl-CoA reductase	101					fatty acid biosynthetic process|regulation of apoptosis	peroxisome	binding|trans-2-enoyl-CoA reductase (NADPH) activity				0		Renal(323;0.0327)		Epithelial(149;3.8e-06)|all cancers(144;0.000272)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Adenine(DB00173)	CCAAGAAATTGATCTTACCAA	0.403000													7	76					0	0	0.001984	0	0	
TNS1	7145	broad.mit.edu	37	2	218713225	218713225	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:218713225G>A	uc002vgt.2	-	17	2038	c.1640C>T	c.(1639-1641)TCC>TTC	p.S547F	TNS1_uc002vgr.2_Missense_Mutation_p.S547F|TNS1_uc002vgs.2_Missense_Mutation_p.S547F|TNS1_uc010zjv.1_Missense_Mutation_p.S547F|TNS1_uc010fvj.1_Missense_Mutation_p.S615F|TNS1_uc010fvk.1_Missense_Mutation_p.S672F|TNS1_uc010fvi.1_Missense_Mutation_p.S234F	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	547						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		CATGGGGTAGGACTTGTCCAG	0.667000													10	56					0	0	0.008291	0	0	
SLC11A1	6556	broad.mit.edu	37	2	219254705	219254705	+	Missense_Mutation	SNP	T	C	C	rs138751863		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:219254705T>C	uc002vhv.2	+	9	1248	c.908T>C	c.(907-909)ATG>ACG	p.M303T	SLC11A1_uc010fvp.1_Missense_Mutation_p.M303T|SLC11A1_uc010fvq.1_Missense_Mutation_p.M236T|SLC11A1_uc010zkc.1_Missense_Mutation_p.M236T|SLC11A1_uc002vhu.1_Missense_Mutation_p.M98T|SLC11A1_uc002vhw.2_Missense_Mutation_p.M185T|SLC11A1_uc010fvr.2_Missense_Mutation_p.M98T	NM_000578	NP_000569	P49279	NRAM1_HUMAN	natural resistance-associated macrophage protein	303	Helical; (Potential).				activation of protein kinase activity|antigen processing and presentation of peptide antigen|cadmium ion transmembrane transport|cellular cadmium ion homeostasis|cellular iron ion homeostasis|defense response to Gram-negative bacterium|defense response to protozoan|divalent metal ion export|inflammatory response|interleukin-2 production|interleukin-3 production|iron ion transport|L-arginine import|macrophage activation|MHC class II biosynthetic process|mRNA stabilization|multicellular organismal iron ion homeostasis|negative regulation of cytokine production|nitrite transport|phagocytosis|positive regulation of dendritic cell antigen processing and presentation|positive regulation of interferon-gamma production|positive regulation of phagocytosis|positive regulation of T-helper 1 type immune response|positive regulation of transcription from RNA polymerase II promoter|respiratory burst|response to interferon-gamma|response to lipopolysaccharide|T cell cytokine production|T cell proliferation involved in immune response|vacuolar acidification|wound healing	integral to plasma membrane|late endosome membrane|lysosome|phagocytic vesicle membrane|tertiary granule membrane	manganese ion transmembrane transporter activity|metal ion:hydrogen antiporter activity|protein homodimerization activity			ovary(3)|central_nervous_system(1)	4		Renal(207;0.0474)		Epithelial(149;1.16e-06)|all cancers(144;0.000195)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTCTTTGTCATGGCTGTCTTT	0.557000													5	45					0	0	0.000602	0	0	
CCDC108	255101	broad.mit.edu	37	2	219868898	219868898	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:219868898C>G	uc002vjl.1	-	33	5415	c.5331G>C	c.(5329-5331)GAG>GAC	p.E1777D	uc010fvz.1_5'Flank|MIR375_hsa-mir-375|MI0000783_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1777	Glu-rich.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		cctcctcttcctcctccaact	0.144000													6	63					0	0	0.001168	0	0	
CCDC108	255101	broad.mit.edu	37	2	219892492	219892492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:219892492C>T	uc002vjl.1	-	13	2175	c.2091G>A	c.(2089-2091)TGG>TGA	p.W697*	CCDC108_uc010fwa.1_Nonsense_Mutation_p.W140*|CCDC108_uc010zkp.1_Nonsense_Mutation_p.W686*|CCDC108_uc010zkq.1_Nonsense_Mutation_p.W632*	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	697						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGGAGTCACCCAGAAGGGGC	0.632000													5	71					0	0	0.000602	0	0	
MYEOV2	150678	broad.mit.edu	37	2	241066106	241066106	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr2:241066106G>T	uc002vyu.1	-	5	633	c.633C>A	c.(631-633)AGC>AGA	p.S211R		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TGCTGTCTTCGCTGACCTCTC	0.473000													11	100					0.000673444	0.000709771	0.008291	1	0	
PSMF1	9491	broad.mit.edu	37	20	1145715	1145715	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:1145715G>A	uc002wel.3	+	8	975	c.807G>A	c.(805-807)ATG>ATA	p.M269I	PSMF1_uc010zpo.1_Intron|PSMF1_uc002wem.3_Intron|PSMF1_uc010zpp.1_Intron|PSMF1_uc002wen.3_Missense_Mutation_p.M269I|PSMF1_uc002wep.3_Missense_Mutation_p.M220I	NM_178578	NP_848693	Q92530	PSMF1_HUMAN	proteasome inhibitor subunit 1	269	Pro-rich.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome core complex	endopeptidase inhibitor activity|protein binding				0						ACGATGACATGTACCTGTGAA	0.572000													5	69					0	0	0.001984	0	0	
FKBP1A	2280	broad.mit.edu	37	20	1352875	1352875	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:1352875C>A	uc002wey.2	-	4	382	c.208G>T	c.(208-210)GGT>TGT	p.G70C	FKBP1A_uc010gac.2_Intron|uc002wew.2_Intron|uc002wex.2_Intron|FKBP1A_uc002wez.2_Missense_Mutation_p.G32V|FKBP1A_uc010gad.2_Intron|FKBP1A_uc002wfa.2_Missense_Mutation_p.G70C|FKBP1A_uc002wfb.2_Missense_Mutation_p.G32V|FKBP1A_uc010gae.2_Missense_Mutation_p.G54C|FKBP1A_uc010gaf.2_RNA	NM_000801	NP_000792	P62942	FKB1A_HUMAN	FK506 binding protein 1A, 12kDa	70	PPIase FKBP-type.				'de novo' protein folding|beta-amyloid formation|fibril organization|heart trabecula formation|negative regulation of protein phosphatase type 2B activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein binding|positive regulation of protein ubiquitination|protein maturation by protein folding|protein refolding|regulation of activin receptor signaling pathway|regulation of immune response|regulation of ryanodine-sensitive calcium-release channel activity|SMAD protein complex assembly|T cell activation|ventricular cardiac muscle tissue morphogenesis	axon|cytosol|sarcoplasmic reticulum membrane|terminal cisterna	activin binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity|signal transducer activity|SMAD binding|type I transforming growth factor beta receptor binding				0					Pimecrolimus(DB00337)|Sirolimus(DB00877)|Tacrolimus(DB00864)	GCTCTCTGACCCACACTCATC	0.498000													9	72					2.74318e-10	3.22578e-10	0.006214	1	0	
MCM8	84515	broad.mit.edu	37	20	5932800	5932800	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:5932800C>A	uc002wmi.2	+	2	516	c.139C>A	c.(139-141)CGT>AGT	p.R47S	TRMT6_uc002wmh.1_5'Flank|TRMT6_uc010zra.1_5'Flank|TRMT6_uc010gbn.1_5'Flank|TRMT6_uc010gbo.1_5'Flank|MCM8_uc002wmj.2_Missense_Mutation_p.R47S|MCM8_uc002wmk.2_Missense_Mutation_p.R47S|MCM8_uc002wml.2_Missense_Mutation_p.R47S|MCM8_uc010gbp.2_Missense_Mutation_p.R47S	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	47					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						CACAGGAAAACGTACTTCTGG	0.403000													14	58					3.27435e-08	3.76328e-08	0.002450	1	0	
FERMT1	55612	broad.mit.edu	37	20	6088221	6088221	+	Silent	SNP	G	C	C	rs148551084		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:6088221G>C	uc002wmr.2	-	6	1596	c.807C>G	c.(805-807)CTC>CTG	p.L269L	FERMT1_uc010gbt.2_Silent_p.L12L|FERMT1_uc002wms.2_Silent_p.L269L|FERMT1_uc002wmt.2_Silent_p.L12L	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	269	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						TAAATCGTAAGAGCAGCTGCT	0.363000													5	37					0	0	0.001984	0	0	
CRNKL1	51340	broad.mit.edu	37	20	20026089	20026089	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:20026089C>G	uc002wrs.2	-	7	1179	c.1147G>C	c.(1147-1149)GCC>CCC	p.A383P		NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	383	HAT 5.				spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						TCAAAGCGGGCATACTTGATC	0.413000													12	138					0	0	0.013537	0	0	
XRN2	22803	broad.mit.edu	37	20	21307129	21307129	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:21307129C>G	uc002wsf.1	+	3	300	c.205C>G	c.(205-207)CCA>GCA	p.P69A	XRN2_uc002wsg.1_5'UTR|XRN2_uc010zsk.1_Missense_Mutation_p.P15A	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	69					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						TCATTATAGACCAGCACCAAA	0.338000													10	76					0	0	0.006214	0	0	
REM1	28954	broad.mit.edu	37	20	30064443	30064443	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:30064443T>A	uc002wwa.2	+	2	479	c.195T>A	c.(193-195)GAT>GAA	p.D65E		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	65					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CCCCAGATGATTGGTCTTCTG	0.602000													9	77					0	0	0.008291	0	0	
TRPC4AP	26133	broad.mit.edu	37	20	33657209	33657209	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:33657209A>T	uc002xbk.2	-	3	338	c.304T>A	c.(304-306)TCT>ACT	p.S102T	TRPC4AP_uc002xbl.2_Missense_Mutation_p.S102T|TRPC4AP_uc010zur.1_Intron|TRPC4AP_uc002xbm.1_Missense_Mutation_p.S102T	NM_015638	NP_056453	Q8TEL6	TP4AP_HUMAN	TRPC4-associated protein isoform a	102	Interaction with TNFRSF1A (By similarity).				protein ubiquitination|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00936)			AGAAGAGGAGAAATTTCCTAG	0.363000													5	74					0	0	0.000602	0	0	
DLGAP4	22839	broad.mit.edu	37	20	35060579	35060579	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:35060579G>A	uc002xff.2	+	3	894	c.459G>A	c.(457-459)AAG>AAA	p.K153K	DLGAP4_uc010zvp.1_Silent_p.K153K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	153					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TCTTCACCAAGGCACCCTCAC	0.657000													5	62					0	0	0.000602	0	0	
BLCAP	10904	broad.mit.edu	37	20	36147487	36147487	+	Silent	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:36147487G>C	uc002xha.2	-	2	293	c.90C>G	c.(88-90)GGC>GGG	p.G30G	BLCAP_uc002xhb.2_Silent_p.G30G|BLCAP_uc002xhc.2_Silent_p.G30G|NNAT_uc002xhd.2_5'Flank|NNAT_uc002xhe.2_5'Flank	NM_006698	NP_006689	P62952	BLCAP_HUMAN	bladder cancer associated protein	30	Helical; (Potential).				apoptosis|cell cycle	integral to membrane					0		Myeloproliferative disorder(115;0.00878)				GCAGGTAGAAGCCCATGAACA	0.572000													4	34					0	0	0.009096	0	0	
CHD6	84181	broad.mit.edu	37	20	40049384	40049384	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:40049384A>C	uc002xka.1	-	31	6069	c.5891T>G	c.(5890-5892)ATC>AGC	p.I1964S		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1964					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CAGATCTGGGATATAAGCCTT	0.463000													12	251					0	0	0.001855	0	0	
PTPRT	11122	broad.mit.edu	37	20	40743892	40743892	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:40743892T>C	uc002xkg.2	-	22	3230	c.3046A>G	c.(3046-3048)ATT>GTT	p.I1016V	PTPRT_uc010ggj.2_Missense_Mutation_p.I1035V|PTPRT_uc010ggi.2_Missense_Mutation_p.I219V	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1016	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCTGTTTCAATCAGGGTGACT	0.478000													8	96					0	0	0.006214	0	0	
MATN4	8785	broad.mit.edu	37	20	43933364	43933364	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:43933364C>T	uc002xnn.2	-	3	334	c.147G>A	c.(145-147)GAG>GAA	p.E49E	MATN4_uc002xno.2_Silent_p.E49E|MATN4_uc002xnp.2_Silent_p.E49E|MATN4_uc010zwr.1_5'UTR|MATN4_uc002xnr.1_Silent_p.E49E|RBPJL_uc002xns.2_5'Flank|RBPJL_uc002xnt.2_5'Flank	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	49	VWFA 1.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				TGGTCTCGAACTCGAAAGGGC	0.632000													6	50					0	0	0.001984	0	0	
ZMYND8	23613	broad.mit.edu	37	20	45867752	45867752	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:45867752G>A	uc002xta.1	-	15	2609	c.2355C>T	c.(2353-2355)GTC>GTT	p.V785V	ZMYND8_uc010ghq.1_Silent_p.V462V|ZMYND8_uc010ghr.1_Silent_p.V760V|ZMYND8_uc002xst.1_Silent_p.V713V|ZMYND8_uc002xsu.1_Intron|ZMYND8_uc002xsv.1_Silent_p.V713V|ZMYND8_uc002xsw.1_Silent_p.V537V|ZMYND8_uc002xsx.1_Silent_p.V537V|ZMYND8_uc002xsy.1_Silent_p.V760V|ZMYND8_uc002xsz.1_Silent_p.V722V|ZMYND8_uc010zxy.1_Silent_p.V812V|ZMYND8_uc002xtb.1_Silent_p.V805V|ZMYND8_uc002xss.2_Silent_p.V785V|ZMYND8_uc010zxz.1_Intron|ZMYND8_uc002xtc.1_Silent_p.V805V|ZMYND8_uc002xtd.1_Silent_p.V780V|ZMYND8_uc002xte.1_Silent_p.V785V|ZMYND8_uc010zya.1_Silent_p.V785V|ZMYND8_uc002xtf.1_Silent_p.V805V|ZMYND8_uc002xtg.2_Silent_p.V779V|ZMYND8_uc010ghs.1_Silent_p.V779V|ZMYND8_uc002xsr.1_5'UTR	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	785							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			CCGTGACGGTGACCGTGGAGG	0.687000													12	129					0	0	0.013537	0	0	
ZMYND8	23613	broad.mit.edu	37	20	45875236	45875236	+	Silent	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:45875236G>C	uc002xta.1	-	14	1994	c.1740C>G	c.(1738-1740)GTC>GTG	p.V580V	ZMYND8_uc010ghq.1_Silent_p.V257V|ZMYND8_uc010ghr.1_Silent_p.V555V|ZMYND8_uc002xst.1_Silent_p.V508V|ZMYND8_uc002xsu.1_Silent_p.V580V|ZMYND8_uc002xsv.1_Silent_p.V508V|ZMYND8_uc002xsw.1_Silent_p.V332V|ZMYND8_uc002xsx.1_Silent_p.V332V|ZMYND8_uc002xsy.1_Silent_p.V555V|ZMYND8_uc002xsz.1_Silent_p.V517V|ZMYND8_uc010zxy.1_Silent_p.V607V|ZMYND8_uc002xtb.1_Silent_p.V600V|ZMYND8_uc002xss.2_Silent_p.V580V|ZMYND8_uc010zxz.1_Silent_p.V575V|ZMYND8_uc002xtc.1_Silent_p.V600V|ZMYND8_uc002xtd.1_Silent_p.V575V|ZMYND8_uc002xte.1_Silent_p.V580V|ZMYND8_uc010zya.1_Silent_p.V580V|ZMYND8_uc002xtf.1_Silent_p.V600V|ZMYND8_uc002xtg.2_Silent_p.V574V|ZMYND8_uc010ghs.1_Silent_p.V574V	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	580							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			CGGCCGTATAGACATCTTCCG	0.403000													9	115					0	0	0.006214	0	0	
PREX1	57580	broad.mit.edu	37	20	47274717	47274717	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:47274717T>G	uc002xtw.1	-	17	1954	c.1931A>C	c.(1930-1932)AAG>ACG	p.K644T	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	644	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			CACCACAGCCTTGTTCTTCTC	0.662000											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	289					0	0	0.010504	0	0	
CASS4	57091	broad.mit.edu	37	20	55033451	55033451	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:55033451C>A	uc002xxp.2	+	7	2234	c.2009C>A	c.(2008-2010)CCC>CAC	p.P670H	CASS4_uc002xxr.2_Missense_Mutation_p.P670H|CASS4_uc010zze.1_Missense_Mutation_p.P616H|CASS4_uc010gio.2_Missense_Mutation_p.P233H	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	670					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						GAGAGGAAACCCCGCTTATCT	0.522000													6	79					0.00116845	0.00122638	0.001168	1	0	
C20orf151	140893	broad.mit.edu	37	20	60986024	60986024	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:60986024C>T	uc002ycw.1	-	14	2062	c.1905G>A	c.(1903-1905)AGG>AGA	p.R635R		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	635											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			CTGTCAGTTTCCTTCTCCCTC	0.637000													9	153					0	0	0.006214	0	0	
C20orf11	54994	broad.mit.edu	37	20	61574443	61574443	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:61574443C>G	uc002ydy.2	+	3	400	c.223C>G	c.(223-225)CTG>GTG	p.L75V		NM_017896	NP_060366	Q9NWU2	CT011_HUMAN	chromosome 20 open reading frame 11	75	CTLH.					nucleus	protein binding				0	Breast(26;5.68e-08)					GGAGATGATACTGAAAGGTCA	0.463000													7	128					0	0	0.003080	0	0	
ZGPAT	84619	broad.mit.edu	37	20	62367201	62367201	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr20:62367201G>A	uc002ygk.2	+	7	1704	c.1526G>A	c.(1525-1527)CGG>CAG	p.R509Q	ZGPAT_uc002ygi.2_Missense_Mutation_p.R489Q|ZGPAT_uc002ygj.2_Missense_Mutation_p.R489Q|ZGPAT_uc010gkk.1_Missense_Mutation_p.R66Q|ZGPAT_uc010gkl.1_Missense_Mutation_p.R489Q|ZGPAT_uc002ygm.2_Missense_Mutation_p.R480Q|ZGPAT_uc002ygn.3_RNA|LIME1_uc011abi.1_5'UTR|LIME1_uc002ygp.3_5'Flank	NM_032527	NP_115916	Q8N5A5	ZGPAT_HUMAN	zinc finger, CCCH-type with G patch domain	509					negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GGGCAGCTCCGGGCTCAGGAA	0.642000													4	41					0	0	0.009096	0	0	
IFNAR2	3455	broad.mit.edu	37	21	34621112	34621112	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:34621112G>C	uc002yrd.2	+	6	821	c.493G>C	c.(493-495)GAT>CAT	p.D165H	IFNAR2_uc002yrb.2_Missense_Mutation_p.D165H|IFNAR2_uc002yrc.2_Missense_Mutation_p.D165H|IFNAR2_uc002yre.2_Missense_Mutation_p.D165H|IFNAR2_uc002yrf.2_Missense_Mutation_p.D165H|IFNAR2_uc002yrg.2_Missense_Mutation_p.D34H|IL10RB_uc002yrh.1_Missense_Mutation_p.D15H|IL10RB_uc002yri.1_5'UTR	NM_207585	NP_997468	P48551	INAR2_HUMAN	interferon alpha/beta receptor 2 isoform a	165	Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to interferon-alpha|response to virus|type I interferon-mediated signaling pathway	extracellular region|extracellular space|integral to plasma membrane	protein kinase binding|type I interferon binding|type I interferon receptor activity				0					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	ATTACAGTTTGATTTATCTCT	0.383000													14	157					0	0	0.003163	0	0	
TFF3	7033	broad.mit.edu	37	21	43733598	43733598	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:43733598C>T	uc002zav.2	-	2	448	c.376G>A	c.(376-378)GCA>ACA	p.A126T		NM_003226	NP_003217	Q07654	TFF3_HUMAN	trefoil factor 3 precursor	76				QEA -> TRKT (in Ref. 7; AAA36766).	defense response|digestion	apical lamina of hyaline layer				skin(1)	1						GCCTTACCTGCTTCCTGCAGG	0.632000													10	43					0	0	0.008291	0	0	
TMPRSS3	64699	broad.mit.edu	37	21	43795903	43795903	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:43795903G>A	uc002zbb.2	-	12	1470	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	TMPRSS3_uc002zay.2_Silent_p.I180I|TMPRSS3_uc002zaz.2_Silent_p.I296I|TMPRSS3_uc002zba.2_Silent_p.I296I|TMPRSS3_uc002zbc.2_Silent_p.I422I	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	423	Peptidase S1.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CTGCGCAGCCGATGCCAAAGC	0.627000													15	167					0	0	0.004990	0	0	
KRTAP12-3	386683	broad.mit.edu	37	21	46078067	46078067	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:46078067C>T	uc002zft.2	+	1	219	c.171C>T	c.(169-171)CCC>CCT	p.P57P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198697	NP_941970	P60328	KR123_HUMAN	keratin associated protein 12-3	57	8.|14 X 5 AA approximate repeats.					intermediate filament				central_nervous_system(1)	1						TGTGCGTGCCCGTGAGCTGCA	0.647000													10	101					0	0	0.013537	0	0	
KRTAP10-12	386685	broad.mit.edu	37	21	46117179	46117179	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:46117179C>A	uc002zfw.1	+	1	93	c.63C>A	c.(61-63)GAC>GAA	p.D21E	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	21						keratin filament					0						GTTCCTGTGACTCTTGCTCCG	0.682000													12	128					1.49906e-05	1.66271e-05	0.002450	1	0	
DIP2A	23181	broad.mit.edu	37	21	47918594	47918594	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr21:47918594A>T	uc002zjo.2	+	5	686	c.503A>T	c.(502-504)GAC>GTC	p.D168V	DIP2A_uc011afy.1_Missense_Mutation_p.D104V|DIP2A_uc011afz.1_Missense_Mutation_p.D168V|DIP2A_uc002zjl.2_Missense_Mutation_p.D168V|DIP2A_uc002zjm.2_Missense_Mutation_p.D168V|DIP2A_uc010gql.2_Missense_Mutation_p.D168V|DIP2A_uc002zjn.2_Missense_Mutation_p.D168V	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	168					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		CCCTGGCTCGACCGGGTCATT	0.652000													15	158					0	0	0.003163	0	0	
Unknown	0	broad.mit.edu	37	22	18846113	18846113	+	RNA	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:18846113C>T	uc002zoe.2	+	5		c.2475C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		ATCTCCTCCACGCACTGGCGC	0.612000													5	11					0	0	0.000602	0	0	
ZDHHC8	29801	broad.mit.edu	37	22	20128487	20128487	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:20128487G>T	uc002zrq.2	+	7	952	c.846G>T	c.(844-846)AAG>AAT	p.K282N	ZDHHC8_uc002zrr.1_Missense_Mutation_p.K282N|ZDHHC8_uc010gsa.2_Missense_Mutation_p.K88N	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	282	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CACCGCTCAAGGTCAAGCTTA	0.647000													13	85					2.61681e-11	3.10594e-11	0.002450	1	0	
DDX17	10521	broad.mit.edu	37	22	38889732	38889732	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:38889732C>G	uc003avy.3	-	10	1473	c.1370G>C	c.(1369-1371)AGA>ACA	p.R457T	DDX17_uc003avx.3_Missense_Mutation_p.R457T|DDX17_uc011anu.1_Missense_Mutation_p.R370T	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	378	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TACCCAATCTCTTTCTGGTTG	0.348000													5	64					0	0	0.001984	0	0	
RRP7B	91695	broad.mit.edu	37	22	42972601	42972601	+	RNA	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:42972601A>T	uc003bcs.2	-	5		c.478T>A			RRP7B_uc003bct.2_RNA					Homo sapiens cDNA FLJ90011 fis, clone HEMBA1000443, highly similar to Gastric cancer antigen Zg14.												0						GAGTCTGCGTAGTCACTGATC	0.622000													3	10					0	0	0.009096	0	0	
PARVG	64098	broad.mit.edu	37	22	44585079	44585079	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:44585079G>T	uc011aqe.1	+	6	757	c.333G>T	c.(331-333)GAG>GAT	p.E111D	PARVG_uc003bep.2_Missense_Mutation_p.E111D|PARVG_uc011aqf.1_Missense_Mutation_p.E111D|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	111	CH 1.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				TGGTGCTGGAGGCCGTGAACC	0.652000													4	39					0.00024832	0.000265572	0.009096	1	0	
CELSR1	9620	broad.mit.edu	37	22	46930239	46930239	+	Silent	SNP	G	A	A	rs35087594	byFrequency	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:46930239G>A	uc003bhw.1	-	1	2829	c.2829C>T	c.(2827-2829)ATC>ATT	p.I943I		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	943	Extracellular (Potential).|Cadherin 7.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ACGTGGGCTCGATGTAGAAGT	0.647000													4	40					0	0	0.000602	0	0	
ATP2B2	491	broad.mit.edu	37	3	10430045	10430045	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:10430045C>A	uc003bvt.2	-	6	1262	c.823G>T	c.(823-825)GCT>TCT	p.A275S	ATP2B2_uc003bvv.2_Missense_Mutation_p.A275S|ATP2B2_uc003bvw.2_Missense_Mutation_p.A275S|ATP2B2_uc010hdp.2_Missense_Mutation_p.A275S|ATP2B2_uc010hdo.2_Missense_Mutation_p.A11S	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	275	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						ACACCCACAGCAGTCACCAAC	0.527000													11	190					1.58986e-06	1.79878e-06	0.008291	1	0	
VGLL4	9686	broad.mit.edu	37	3	11600159	11600159	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:11600159C>G	uc003bwf.2	-	6	1110	c.744G>C	c.(742-744)ACG>ACC	p.T248T	VGLL4_uc010hdx.1_Silent_p.T254T|VGLL4_uc003bwg.2_Silent_p.T253T|VGLL4_uc010hdv.1_Silent_p.T164T|VGLL4_uc010hdw.1_Silent_p.T168T|VGLL4_uc011aun.1_Silent_p.T189T	NM_014667	NP_055482	Q14135	VGLL4_HUMAN	vestigial like 4 isoform b	248					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1				LUSC - Lung squamous cell carcinoma(1;0.089)|Lung(1;0.111)		TCTGGAGCCACGTGTCACCCA	0.657000													10	123					0	0	0.006214	0	0	
KAT2B	8850	broad.mit.edu	37	3	20168959	20168959	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:20168959G>A	uc003cbq.2	+	11	2113	c.1667G>A	c.(1666-1668)GGT>GAT	p.G556D		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	556	N-acetyltransferase.				cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CGTGTTATTGGTGGTATCTGT	0.368000													9	91					0	0	0.004482	0	0	
STT3B	201595	broad.mit.edu	37	3	31663715	31663715	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:31663715G>A	uc011axe.1	+	10	1454	c.1454G>A	c.(1453-1455)GGG>GAG	p.G485E		NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	485					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						CACTATTTGGGGGATGACATG	0.428000													13	71					0	0	0.001855	0	0	
SCN11A	11280	broad.mit.edu	37	3	38950566	38950566	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:38950566G>C	uc011ays.1	-	9	1420	c.1221C>G	c.(1219-1221)AAC>AAG	p.N407K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	407					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTACATTCTTGTTCTGCTCCT	0.468000													15	143					0	0	0.004007	0	0	
SCN11A	11280	broad.mit.edu	37	3	38951693	38951694	+	Missense_Mutation	DNP	CA	GC	GC			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:38951693_38951694CA>GC	uc011ays.1	-	8	1163_1164	c.964_965TG>GC	c.(964-966)TGT>GCT	p.C322A		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	322	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TTGTATGGAACAGGCACTAGAT	0.396000													6	59					0	0	0.004672	0	0	
COL7A1	1294	broad.mit.edu	37	3	48614351	48614351	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:48614351C>G	uc003ctz.2	-	66	5571	c.5570G>C	c.(5569-5571)GGA>GCA	p.G1857A		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1857	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCCTTTCTCTCCCTAAGGAAG	0.562000													9	112					0	0	0.006214	0	0	
COL7A1	1294	broad.mit.edu	37	3	48614432	48614432	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:48614432C>G	uc003ctz.2	-	65	5562	c.5561G>C	c.(5560-5562)GGG>GCG	p.G1854A		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1854	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TACCTTCCTCCCGTCTTCTCC	0.552000													12	118					0	0	0.013537	0	0	
COL7A1	1294	broad.mit.edu	37	3	48625317	48625317	+	Silent	SNP	G	A	A	rs138537589	by1000genomes	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:48625317G>A	uc003ctz.2	-	21	2767	c.2766C>T	c.(2764-2766)GAC>GAT	p.D922D		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	922	Fibronectin type-III 8.|Nonhelical region (NC1).				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCTCCAGCCCGTCCAGGTGAT	0.667000													3	17					0	0	0.004672	0	0	
BSN	8927	broad.mit.edu	37	3	49700849	49700849	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:49700849C>A	uc003cxe.3	+	7	11372	c.11258C>A	c.(11257-11259)GCT>GAT	p.A3753D		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3753					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CGGCAGGCAGCTCCAGGACCA	0.642000													4	46					0.00024832	0.000265572	0.009096	1	0	
UBA7	7318	broad.mit.edu	37	3	49847796	49847796	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:49847796C>G	uc003cxr.2	-	13	1704	c.1533G>C	c.(1531-1533)CCG>CCC	p.P511P		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	511	1-2.|2 approximate repeats.				ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GGTAGGTGAGCGGGATCACCT	0.597000													9	109					0	0	0.004482	0	0	
LMOD3	56203	broad.mit.edu	37	3	69171378	69171378	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:69171378G>A	uc003dns.2	-	1	369	c.160C>T	c.(160-162)CAG>TAG	p.Q54*	LMOD3_uc003dnt.2_Nonsense_Mutation_p.Q54*	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	54						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		TGATCTTTCTGAATCATTCCC	0.458000													3	26					0	0	0.009096	0	0	
OR5K4	403278	broad.mit.edu	37	3	98073414	98073414	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:98073414T>A	uc011bgv.1	+	1	717	c.717T>A	c.(715-717)TCT>TCA	p.S239S		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	239	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAGCATTTTCTACCTGTGCAT	0.373000													10	117					0	0	0.010729	0	0	
MYH15	22989	broad.mit.edu	37	3	108135665	108135665	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:108135665C>A	uc003dxa.1	-	30	4059	c.4002G>T	c.(4000-4002)GAG>GAT	p.E1334D		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1334	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTACTTTGGTCTCCTTTTCCA	0.393000													12	93					2.80697e-09	3.27051e-09	0.010729	1	0	
DPPA4	55211	broad.mit.edu	37	3	109050752	109050752	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:109050752C>A	uc003dxq.3	-	3	360	c.305G>T	c.(304-306)TGG>TTG	p.W102L	DPPA4_uc011bho.1_Missense_Mutation_p.W102L|DPPA4_uc011bhp.1_Missense_Mutation_p.W102L	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	102						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TTGTTGGCACCAGGCCCGCAG	0.532000													13	134					4.36969e-10	5.12657e-10	0.001855	1	0	
DPPA4	55211	broad.mit.edu	37	3	109050776	109050776	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:109050776A>C	uc003dxq.3	-	3	336	c.281T>G	c.(280-282)ATT>AGT	p.I94S	DPPA4_uc011bho.1_Missense_Mutation_p.I94S|DPPA4_uc011bhp.1_Missense_Mutation_p.I94S	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	94						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GTCCCGGTGAATCAGATTAAC	0.547000													18	139					0	0	0.006122	0	0	
NDUFB4	4710	broad.mit.edu	37	3	120315275	120315275	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:120315275C>T	uc003edu.2	+	1	148	c.69C>T	c.(67-69)TAC>TAT	p.Y23Y	NDUFB4_uc003edt.2_Silent_p.Y23Y	NM_004547	NP_004538	O95168	NDUB4_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	23					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0				GBM - Glioblastoma multiforme(114;0.14)	NADH(DB00157)	CAGCCGAATACAACATATCTC	0.597000													5	30					0	0	0.000602	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567000													8	26					0	0	0.001855	0	0	
COL6A6	131873	broad.mit.edu	37	3	130300458	130300458	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:130300458C>A	uc010htl.2	+	8	3632	c.3601C>A	c.(3601-3603)CAG>AAG	p.Q1201K	COL6A6_uc003eni.3_5'Flank	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1201	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGAGAAAGGGCAGACTTTGCT	0.458000													7	73					5.18039e-06	5.82221e-06	0.003080	1	0	
RAB6B	51560	broad.mit.edu	37	3	133558433	133558433	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:133558433C>T	uc003epy.2	-	5	699	c.318G>A	c.(316-318)AAG>AAA	p.K106K	RAB6B_uc011blu.1_Silent_p.K93K	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	106					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						CGTCGATCCACTTAGAGGTCT	0.547000													16	103					0	0	0.007413	0	0	
XRN1	54464	broad.mit.edu	37	3	142141456	142141456	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:142141456C>A	uc003eus.2	-	8	1002	c.935G>T	c.(934-936)GGA>GTA	p.G312V	XRN1_uc003eut.2_Missense_Mutation_p.G312V|XRN1_uc003euu.2_Missense_Mutation_p.G312V|XRN1_uc003euv.1_Missense_Mutation_p.G173V|XRN1_uc003euw.2_Missense_Mutation_p.G312V|XRN1_uc011bnh.1_Missense_Mutation_p.G102V	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	312					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						AACATATGTTCCATAAAGAAG	0.358000													10	83					6.40141e-05	7.03878e-05	0.010729	1	0	
CP	1356	broad.mit.edu	37	3	148899805	148899805	+	Silent	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:148899805A>T	uc003ewy.3	-	14	2794	c.2541T>A	c.(2539-2541)ACT>ACA	p.T847T	CP_uc011bnr.1_RNA|CP_uc003eww.3_5'Flank|CP_uc003ewx.3_Silent_p.T628T|CP_uc003ewz.2_Silent_p.T847T	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	847	Plastocyanin-like 5.|F5/8 type A 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	GTAATGTTGGAGTAACTGTAG	0.468000													8	74					0	0	0.003080	0	0	
TSC22D2	9819	broad.mit.edu	37	3	150127780	150127780	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:150127780G>C	uc003exv.2	+	1	993	c.643G>C	c.(643-645)GAC>CAC	p.D215H	TSC22D2_uc003exw.2_RNA|TSC22D2_uc003exx.2_Missense_Mutation_p.D215H	NM_014779	NP_055594	O75157	T22D2_HUMAN	TSC22 domain family, member 2	215							sequence-specific DNA binding transcription factor activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			TGCGGAGCGGGACAGCGGCCT	0.607000													7	86					0	0	0.003080	0	0	
CCNL1	57018	broad.mit.edu	37	3	156867644	156867644	+	Missense_Mutation	SNP	A	C	C	rs148365707	byFrequency	TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:156867644A>C	uc003fbf.2	-	8	1601	c.1002T>G	c.(1000-1002)TTT>TTG	p.F334L	CCNL1_uc003fbd.1_Missense_Mutation_p.F334L|CCNL1_uc003fbe.2_Missense_Mutation_p.F128L|CCNL1_uc003fbg.2_RNA|CCNL1_uc011bor.1_RNA|CCNL1_uc003fbi.1_Missense_Mutation_p.F179L	NM_020307	NP_064703	Q9UK58	CCNL1_HUMAN	cyclin L1	334					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	nuclear speck	protein kinase binding			lung(3)|breast(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(72;0.0295)|Lung(72;0.0308)			AGGCTGGAGAAAATCCACCCA	0.393000													9	65					0	0	0.006214	0	0	
TRA2B	6434	broad.mit.edu	37	3	185643391	185643391	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:185643391C>T	uc003fpv.2	-	3	470	c.194G>A	c.(193-195)CGA>CAA	p.R65Q	TRA2B_uc003fpt.2_5'Flank|TRA2B_uc003fpu.2_RNA|TRA2B_uc010hym.2_5'UTR|TRA2B_uc003fpw.2_Missense_Mutation_p.R65Q	NM_004593	NP_004584	P62995	TRA2B_HUMAN	splicing factor, arginine/serine-rich 10	65	Arg/Ser-rich (RS1 domain).				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ATAATGCCTTCGGGAGCTTCT	0.463000													5	79					0	0	0.000602	0	0	
AHSG	197	broad.mit.edu	37	3	186334974	186334974	+	Splice_Site	SNP	A	G	G	rs145054587		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:186334974A>G	uc003fqk.3	+	4	491	c.410_splice	c.e4-2	p.D137_splice	AHSG_uc003fqj.2_Splice_Site_p.D137_splice|AHSG_uc003fql.3_Silent_p.A137A|AHSG_uc003fqm.3_Splice_Site_p.D136_splice|AHSG_uc010hyp.2_Splice_Site_p.D100_splice	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein						acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		CTCTCCGAGCAGACTCAGCCG	0.642000											OREG0015968	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	78					0	0	0.001168	0	0	
PPP1R2	5504	broad.mit.edu	37	3	195269755	195269755	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr3:195269755G>A	uc003fup.2	-	1	470	c.94C>T	c.(94-96)CCC>TCC	p.P32S	PPP1R2_uc003fuq.3_Missense_Mutation_p.P32S	NM_006241	NP_006232	P41236	IPP2_HUMAN	protein phosphatase 1, regulatory subunit 2	32					glycogen metabolic process|regulation of phosphoprotein phosphatase activity|regulation of signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity			urinary_tract(1)	1	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)		Epithelial(36;2.64e-22)|all cancers(36;2.69e-20)|OV - Ovarian serous cystadenocarcinoma(49;3.52e-19)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;9.55e-05)		TTCCCGCGGGGCTGTTCGGCC	0.682000													4	9					0	0	0.009096	0	0	
PIGG	54872	broad.mit.edu	37	4	533012	533012	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:533012G>T	uc003gak.3	+	13	2942	c.2806G>T	c.(2806-2808)GTT>TTT	p.V936F	PIGG_uc003gaj.3_Missense_Mutation_p.V928F|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.V803F|PIGG_uc003gal.3_Missense_Mutation_p.V847F	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	936	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity	p.V928I(1)		central_nervous_system(2)|ovary(1)|skin(1)	4						CACGTACATCGTTTTGGTGAC	0.398000													7	90					1.06961e-07	1.22104e-07	0.003080	1	0	
HTT	3064	broad.mit.edu	37	4	3190712	3190712	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:3190712G>C	uc011bvq.1	+	41	5411	c.5266G>C	c.(5266-5268)GAC>CAC	p.D1756H		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1754					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		TCTTTTAGAAGACATTGTTAC	0.378000													12	94					0	0	0.010729	0	0	
HGFAC	3083	broad.mit.edu	37	4	3446393	3446393	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:3446393G>A	uc003ghc.2	+	7	777	c.774G>A	c.(772-774)CTG>CTA	p.L258L	HGFAC_uc010icw.2_Silent_p.L258L	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	258	EGF-like 2.				proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CCTGCCACCTGATCGTGGCCA	0.721000													4	18					0	0	0.001984	0	0	
CRMP1	1400	broad.mit.edu	37	4	5830377	5830377	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:5830377A>G	uc003gip.2	-	13	1401	c.1300T>C	c.(1300-1302)TTC>CTC	p.F434L	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Missense_Mutation_p.F346L|CRMP1_uc003giq.2_Missense_Mutation_p.F434L|CRMP1_uc003gir.2_Missense_Mutation_p.F429L|CRMP1_uc003gis.2_Missense_Mutation_p.F548L	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	434					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		ATACCCTCGAAGATGTTGTAC	0.512000													4	33					0	0	0.009096	0	0	
KIAA0232	9778	broad.mit.edu	37	4	6862720	6862720	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:6862720C>G	uc003gjr.3	+	7	1074	c.611C>G	c.(610-612)TCT>TGT	p.S204C	KIAA0232_uc003gjq.3_Missense_Mutation_p.S204C	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	204	Poly-Ser.						ATP binding			ovary(2)	2						TGTTCTTACTCTAGCTCTTCT	0.438000													7	125					0	0	0.003080	0	0	
GABRA2	2555	broad.mit.edu	37	4	46307710	46307711	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:46307710_46307711TC>AA	uc003gxc.3	-	6	1250_1251	c.577_578GA>TT	c.(577-579)GAG>TTG	p.E193L	GABRA2_uc010igc.2_Missense_Mutation_p.E193L|GABRA2_uc011bzc.1_Missense_Mutation_p.E138L|GABRA2_uc003gxe.2_Missense_Mutation_p.E193L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	193	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ATAAGTGACCTCTGAAGTTGTA	0.366000													8	61					0	0	0.004672	0	0	
KDR	3791	broad.mit.edu	37	4	55980320	55980320	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:55980320G>A	uc003has.2	-	6	1073	c.771C>T	c.(769-771)GAC>GAT	p.D257D	KDR_uc003hat.1_Silent_p.D257D|KDR_uc011bzx.1_Silent_p.D257D	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	257	Ig-like C2-type 3.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CCCAGTTGAAGTCAATCCCCA	0.403000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	163					0	0	0.006214	0	0	
IGJ	3512	broad.mit.edu	37	4	71522076	71522076	+	Silent	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:71522076G>C	uc003hfn.3	-	4	591	c.450C>G	c.(448-450)GCC>GCG	p.A150A	IGJ_uc010ihz.2_Silent_p.A166A	NM_144646	NP_653247	P01591	IGJ_HUMAN	immunoglobulin J chain	150					immune response	extracellular region	antigen binding				0			Lung(101;0.235)			CTGGGGTTAAGGCTGTTTCCA	0.443000													6	59					0	0	0.001984	0	0	
MRPL1	65008	broad.mit.edu	37	4	78871018	78871018	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:78871018G>A	uc003hku.2	+	8	1043	c.845G>A	c.(844-846)AGA>AAA	p.R282K	MRPL1_uc010iji.1_Intron	NM_020236	NP_064621	Q9BYD6	RM01_HUMAN	mitochondrial ribosomal protein L1 precursor	282							RNA binding				0						TGTAGGCACAGACCGCTGAAT	0.348000													8	82					0	0	0.003080	0	0	
HELQ	113510	broad.mit.edu	37	4	84342825	84342825	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:84342825T>A	uc003hom.2	-	15	3019	c.2840A>T	c.(2839-2841)GAG>GTG	p.E947V	HELQ_uc010ikb.2_Missense_Mutation_p.E880V|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	947							ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						AATGTTGGTCTCTTTGAGCAA	0.353000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					4	50					0	0	0.000602	0	0	
GPRIN3	285513	broad.mit.edu	37	4	90170714	90170714	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:90170714T>G	uc003hsm.1	-	2	1067	c.548A>C	c.(547-549)GAT>GCT	p.D183A		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	183										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GGACACCTGATCTTTGCTGCT	0.507000													7	110					0	0	0.003080	0	0	
DKK2	27123	broad.mit.edu	37	4	107956604	107956604	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:107956604G>A	uc003hyi.2	-	1	850	c.145C>T	c.(145-147)CAG>TAG	p.Q49*	DKK2_uc010ilw.1_Intron|DKK2_uc003hyj.1_Nonsense_Mutation_p.Q49*	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	49					multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		TTGGCGGCCTGACCAGGCGTC	0.597000													8	76					0	0	0.008291	0	0	
CFI	3426	broad.mit.edu	37	4	110663684	110663684	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:110663684G>T	uc003hzr.3	-	12	1705	c.1497C>A	c.(1495-1497)TAC>TAA	p.Y499*	CFI_uc003hzq.2_Nonsense_Mutation_p.Y296*|CFI_uc011cft.1_Nonsense_Mutation_p.Y507*|CFI_uc003hzs.3_Nonsense_Mutation_p.Y492*	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	499	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		AACGATTTCCGTAAAACTTAG	0.358000													7	73					2.0095e-06	2.26347e-06	0.001984	1	0	
CFI	3426	broad.mit.edu	37	4	110663715	110663715	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:110663715A>G	uc003hzr.3	-	12	1674	c.1466T>C	c.(1465-1467)GTT>GCT	p.V489A	CFI_uc003hzq.2_Missense_Mutation_p.V286A|CFI_uc011cft.1_Missense_Mutation_p.V497A|CFI_uc003hzs.3_Missense_Mutation_p.V482A	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	489	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		TATTAGTTTAACTTCACCCCA	0.343000													9	79					0	0	0.004482	0	0	
ENPEP	2028	broad.mit.edu	37	4	111397885	111397885	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:111397885C>T	uc003iab.3	+	1	657	c.315C>T	c.(313-315)CAC>CAT	p.H105H		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	105	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	ACGACCTGCACGTGAAGCCCC	0.617000													22	94					0	0	0.010504	0	0	
TLL1	7092	broad.mit.edu	37	4	166935594	166935594	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr4:166935594G>C	uc003irh.1	+	8	1571	c.924G>C	c.(922-924)ATG>ATC	p.M308I	TLL1_uc011cjn.1_Missense_Mutation_p.M308I|TLL1_uc011cjo.1_Missense_Mutation_p.M132I	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	308	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCAGGGGGATGTTTCTGGATA	0.418000													20	243					0	0	0.008871	0	0	
CDH10	1008	broad.mit.edu	37	5	24537494	24537494	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:24537494A>T	uc003jgr.1	-	3	853	c.521T>A	c.(520-522)GTT>GAT	p.V174D	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	174	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CTTACCTACAACAGACATTTC	0.323000										HNSCC(23;0.051)			17	178					0	0	0.007413	0	0	
UGT3A1	133688	broad.mit.edu	37	5	35955903	35955903	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:35955903C>T	uc003jjv.1	-	6	1296	c.1139G>A	c.(1138-1140)CGT>CAT	p.R380H	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.R380H|UGT3A1_uc011cor.1_Missense_Mutation_p.R346H	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	380	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CACACCATGACGGATGGCCTC	0.493000													7	95					0	0	0.001984	0	0	
EGFLAM	133584	broad.mit.edu	37	5	38407142	38407142	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:38407142T>G	uc003jlc.1	+	8	1365	c.1041T>G	c.(1039-1041)TGT>TGG	p.C347W	EGFLAM_uc003jlb.1_Missense_Mutation_p.C347W|EGFLAM_uc003jle.1_Missense_Mutation_p.C113W|EGFLAM_uc003jlf.1_Intron	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	347	EGF-like 1.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACATGCCTTGTGATGAAACTC	0.557000													10	67					0	0	0.008291	0	0	
C6	729	broad.mit.edu	37	5	41161823	41161823	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:41161823T>C	uc003jmk.2	-	10	1640	c.1430A>G	c.(1429-1431)AAG>AGG	p.K477R	C6_uc003jml.1_Missense_Mutation_p.K477R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	477	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AGGATTTTCCTTCACTGATTC	0.428000													8	128					0	0	0.004482	0	0	
ANKRD55	79722	broad.mit.edu	37	5	55471985	55471985	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:55471985G>A	uc003jqu.2	-	4	458	c.306C>T	c.(304-306)ACC>ACT	p.T102T		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	101	ANK 3.									skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				GTACCAGGTAGGTGGCCAGGC	0.517000													10	108					0	0	0.006214	0	0	
DIMT1L	27292	broad.mit.edu	37	5	61690434	61690434	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:61690434C>T	uc003jta.2	-	7	576	c.447G>A	c.(445-447)AGG>AGA	p.R149R	DIMT1L_uc011cqq.1_Silent_p.R149R	NM_014473	NP_055288	Q9UNQ2	DIMT1_HUMAN	dimethyladenosine transferase	149						nucleolus	RNA binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			central_nervous_system(1)	1		Lung NSC(810;8.94e-06)|Prostate(74;0.0235)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.122)		GTATAGCACACCTGAAAAGAA	0.358000													13	58					0	0	0.001855	0	0	
SLCO4C1	353189	broad.mit.edu	37	5	101631698	101631698	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:101631698C>T	uc003knm.2	-	1	556	c.269G>A	c.(268-270)TGG>TAG	p.W90*		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	90	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GAAGTTCCTCCAGCCGTAAGA	0.572000													6	50					0	0	0.001168	0	0	
SEC24A	10802	broad.mit.edu	37	5	134010858	134010858	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:134010858C>G	uc003kzs.2	+	6	1390	c.1102C>G	c.(1102-1104)CCA>GCA	p.P368A	SEC24A_uc011cxu.1_Missense_Mutation_p.P132A	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	368					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTGAAGCCTCCAGTTCCAAA	0.408000													6	68					0	0	0.003080	0	0	
GFRA3	2676	broad.mit.edu	37	5	137600131	137600131	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:137600131G>T	uc003lcn.2	-	2	338	c.198C>A	c.(196-198)TCC>TCA	p.S66S	GFRA3_uc003lco.2_Silent_p.S66S	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	66					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TAGAGGTGCAGGAATCCAGGT	0.597000													8	53					0.00307968	0.00318631	0.003080	1	0	
HBEGF	1839	broad.mit.edu	37	5	139715520	139715520	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:139715520G>C	uc003lfi.2	-	4	766	c.491C>G	c.(490-492)GCC>GGC	p.A164G	HBEGF_uc010jfj.2_RNA	NM_001945	NP_001936	Q99075	HBEGF_HUMAN	heparin-binding EGF-like growth factor	164	Helical; (Potential).				epidermal growth factor receptor signaling pathway|muscle organ development|positive regulation of protein kinase B signaling cascade|positive regulation of wound healing	cell surface|extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|eukaryotic cell surface binding|growth factor activity|heparin binding|receptor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCACCACGGCCAGGATGGT	0.547000													11	82					0	0	0.013537	0	0	
IK	3550	broad.mit.edu	37	5	140038627	140038627	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140038627A>G	uc003lgq.2	+	12	1164	c.1054A>G	c.(1054-1056)AGA>GGA	p.R352G		NM_006083	NP_006074	Q13123	RED_HUMAN	RED protein	352	17 X 2 AA tandem repeats of R-[ED].|6.				cell-cell signaling|immune response	extracellular space|nucleus|soluble fraction				large_intestine(1)	1		all_hematologic(541;4.8e-07)|all_lung(500;0.000434)|Lung NSC(810;0.00161)|Breast(839;0.128)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ggaaagagacagagaccgtga	0.139000													4	41					0	0	0.009096	0	0	
PCDHA2	56146	broad.mit.edu	37	5	140176641	140176641	+	Missense_Mutation	SNP	G	C	C	rs151049201		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140176641G>C	uc003lhd.2	+	1	2198	c.2092G>C	c.(2092-2094)GTG>CTG	p.V698L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.V698L|PCDHA2_uc011czy.1_Missense_Mutation_p.V698L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	698	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGTCAACGTGTACCTGAT	0.657000													13	125					0	0	0.001855	0	0	
PCDHA4	56144	broad.mit.edu	37	5	140187452	140187452	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140187452A>C	uc003lhi.2	+	1	781	c.680A>C	c.(679-681)CAG>CCG	p.Q227P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.Q227P|PCDHA4_uc011daa.1_Missense_Mutation_p.Q227P	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	227	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCACCGTTCAGTTACTCATC	0.423000													11	94					0	0	0.010729	0	0	
PCDHA5	56143	broad.mit.edu	37	5	140202534	140202534	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140202534G>A	uc003lhl.2	+	1	1174	c.1174G>A	c.(1174-1176)GTT>ATT	p.V392I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.V392I|PCDHA5_uc003lhj.1_Missense_Mutation_p.V392I	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	392	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGCCCCACGTTCCCTTCAA	0.587000													18	199					0	0	0.008871	0	0	
PCDHA12	56137	broad.mit.edu	37	5	140255711	140255711	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140255711T>A	uc003lic.2	+	1	781	c.654T>A	c.(652-654)GGT>GGA	p.G218G	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.G218G	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	218	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGATGGCGGTAAACCAGAAC	0.403000													6	71					0	0	0.001168	0	0	
PCDHB16	57717	broad.mit.edu	37	5	140564258	140564258	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140564258C>T	uc003liv.2	+	1	3279	c.2124C>T	c.(2122-2124)TTC>TTT	p.F708F	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	708	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTCCTGTTCGTGGCGGTGC	0.687000													16	185					0	0	0.004007	0	0	
PCDHB14	56122	broad.mit.edu	37	5	140603844	140603844	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140603844C>A	uc003ljb.2	+	1	767	c.767C>A	c.(766-768)CCC>CAC	p.P256H	PCDHB14_uc011dal.1_Missense_Mutation_p.P103H	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	256	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGGACAGACCCCTTGGCTCC	0.458000													7	87					8.12818e-05	8.84179e-05	0.001984	1	0	
PCDHB15	56121	broad.mit.edu	37	5	140627303	140627303	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140627303G>A	uc003lje.2	+	1	2157	c.2157G>A	c.(2155-2157)GCG>GCA	p.A719A		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	719	Cytoplasmic (Potential).		A -> V (in a breast cancer sample; somatic mutation).		homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding	p.A719V(1)		ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGCAGGGCGGCCTCAGTGG	0.647000													16	230					0	0	0.004007	0	0	
PCDHGA7	56108	broad.mit.edu	37	5	140763604	140763604	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140763604G>A	uc003lka.1	+	1	1138	c.1138G>A	c.(1138-1140)GGT>AGT	p.G380S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.G380S	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	380	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAAAGAATGGTGAGGTGAC	0.393000													6	31					0	0	0.001168	0	0	
PCDHGA12	26025	broad.mit.edu	37	5	140810919	140810919	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140810919G>A	uc003lkt.1	+	1	762	c.593G>A	c.(592-594)CGC>CAC	p.R198H	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.R198H	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	198	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCTGAAACGCGCCCTGGAC	0.622000													17	132					0	0	0.012319	0	0	
PCDHGC4	56098	broad.mit.edu	37	5	140864787	140864787	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:140864787C>A	uc003lky.1	+	1	47	c.47C>A	c.(46-48)ACC>AAC	p.T16N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Missense_Mutation_p.T16N	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	16					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGTGGGCTACCCTTTTGTTC	0.562000													12	66					1.49906e-05	1.66271e-05	0.002450	1	0	
ABLIM3	22885	broad.mit.edu	37	5	148630060	148630060	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:148630060C>T	uc003lpy.2	+	20	2031	c.1780C>T	c.(1780-1782)CTG>TTG	p.L594L	ABLIM3_uc003lpz.1_Silent_p.L594L|ABLIM3_uc003lqa.1_Silent_p.L491L|ABLIM3_uc003lqb.2_Silent_p.L483L|ABLIM3_uc003lqc.1_Silent_p.L561L|ABLIM3_uc003lqd.1_Silent_p.L499L|ABLIM3_uc003lqf.2_Silent_p.L483L|ABLIM3_uc003lqe.1_Silent_p.L483L	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	594					axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGAAATGGGCTGCACAGGGT	0.488000													4	46					0	0	0.009096	0	0	
LOC134466	134466	broad.mit.edu	37	5	150322192	150322192	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:150322192T>C	uc003lsz.1	-	2	211	c.62A>G	c.(61-63)GAG>GGG	p.E21G	LOC134466_uc003ltb.2_RNA|LOC134466_uc003lta.2_RNA					RecName: Full=Putative KRAB domain-containing protein LOC134466;												0						TTGCTGCCACTCCTCCTGGGT	0.488000													11	96					0	0	0.008291	0	0	
NMUR2	56923	broad.mit.edu	37	5	151771908	151771908	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:151771908G>C	uc003luv.2	-	4	1258	c.1092C>G	c.(1090-1092)ATC>ATG	p.I364M		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	364	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CTGTCAGGAAGATGTTCCGCT	0.542000													6	110					0	0	0.001168	0	0	
FAM114A2	10827	broad.mit.edu	37	5	153406876	153406876	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:153406876C>A	uc003lvb.2	-	7	1237	c.649G>T	c.(649-651)GAG>TAG	p.E217*	FAM114A2_uc003lvc.2_Nonsense_Mutation_p.E217*|FAM114A2_uc003lvd.2_Nonsense_Mutation_p.E217*|FAM114A2_uc003lve.2_Nonsense_Mutation_p.E33*|FAM114A2_uc011dda.1_Nonsense_Mutation_p.E147*	NM_018691	NP_061161	Q9NRY5	F1142_HUMAN	hypothetical protein LOC10827	217							purine nucleotide binding				0						TCTTCTTTCTCCTTCGCCTCT	0.423000													6	36					4.096e-09	4.75061e-09	0.001168	1	0	
GALNT10	55568	broad.mit.edu	37	5	153760070	153760070	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:153760070G>A	uc003lvh.2	+	6	949	c.817G>A	c.(817-819)GAC>AAC	p.D273N	GALNT10_uc003lvg.1_Missense_Mutation_p.D273N|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Missense_Mutation_p.D114N	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	273	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			TGACCATGACGACTTTCGGTA	0.532000													14	130					0	0	0.004007	0	0	
DRD1	1812	broad.mit.edu	37	5	174868997	174868997	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr5:174868997G>A	uc003mcz.2	-	2	2051	c.1106C>T	c.(1105-1107)GCG>GTG	p.A369V		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	369	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	GGAAAACATCGCGGCCCCATT	0.502000													7	103					0	0	0.004482	0	0	
MYLK4	340156	broad.mit.edu	37	6	2678542	2678542	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:2678542A>C	uc003mty.3	-	10	1249	c.952T>G	c.(952-954)TGC>GGC	p.C318G	MYLK4_uc003mtx.3_Missense_Mutation_p.C33G	NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	318	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TCCCACCTGCAGGCCAGGATG	0.488000													19	87					0	0	0.012319	0	0	
MAK	4117	broad.mit.edu	37	6	10796386	10796386	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:10796386G>C	uc003mzl.2	-	8	1217	c.988C>G	c.(988-990)CAG>GAG	p.Q330E	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_Intron|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.Q330E|MAK_uc010jov.1_RNA	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	330	Glu/Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				CCAACAACCTGATCGATTATA	0.488000													10	92					0	0	0.006214	0	0	
SCAND3	114821	broad.mit.edu	37	6	28547186	28547186	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:28547186C>A	uc003nlo.2	-	2	1049	c.431G>T	c.(430-432)GGC>GTC	p.G144V		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	144					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCCATATGTGCCCTGTGAGAC	0.393000													8	114					1.12685e-05	1.25535e-05	0.004482	1	0	
ZFP57	346171	broad.mit.edu	37	6	29643777	29643777	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:29643777T>A	uc011dlw.1	-	2	334	c.183A>T	c.(181-183)CTA>CTT	p.L61L	ZFP57_uc003nnl.3_Silent_p.L41L	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	33	KRAB.				DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						GGCTGGCATCTAGACAGTCCC	0.473000													25	247					0	0	0.003954	0	0	
VARS2	57176	broad.mit.edu	37	6	30884912	30884912	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:30884912G>C	uc003nsc.1	+	8	1416	c.784G>C	c.(784-786)GTG>CTG	p.V262L	VARS2_uc003nsd.2_Missense_Mutation_p.V262L|VARS2_uc011dmx.1_Missense_Mutation_p.V262L|VARS2_uc011dmy.1_Missense_Mutation_p.V122L|VARS2_uc011dmz.1_Missense_Mutation_p.V292L|VARS2_uc011dna.1_Missense_Mutation_p.V262L|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'Flank|VARS2_uc010jsg.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	262					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						TGAAGCTTTTGTGCGGCTCTA	0.562000													10	121					0	0	0.008291	0	0	
NEU1	4758	broad.mit.edu	37	6	31827959	31827959	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:31827959C>T	uc003nxq.3	-	5	1037	c.881G>A	c.(880-882)CGC>CAC	p.R294H	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_Intron|NEU1_uc010jth.2_Missense_Mutation_p.R125H|NEU1_uc003nxs.3_3'UTR	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	294			R -> S (in SIALIDOSIS; type 1; mild mutation as residual activity is still measurable).			cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding	p.R294C(1)		ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	ATCATAGCTGCGGAGGACAAT	0.577000													5	78					0	0	0.000602	0	0	
SLC26A8	116369	broad.mit.edu	37	6	35927520	35927520	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:35927520A>C	uc003olm.2	-	15	1813	c.1702T>G	c.(1702-1704)TAC>GAC	p.Y568D	SLC26A8_uc010jwa.2_RNA|SLC26A8_uc003olk.2_Missense_Mutation_p.Y150D|SLC26A8_uc003oln.2_Missense_Mutation_p.Y568D|SLC26A8_uc003oll.2_Missense_Mutation_p.Y463D	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	568	STAS.|Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TTTAGGTAGTAAACATTTACA	0.463000													13	113					0	0	0.002450	0	0	
DNAH8	1769	broad.mit.edu	37	6	38905858	38905858	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:38905858T>C	uc003ooe.1	+	76	11621	c.11021T>C	c.(11020-11022)ATC>ACC	p.I3674T	DNAH8_uc003oog.1_Missense_Mutation_p.I123T|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAGATCAAGATCAACGCGGCT	0.512000													6	81					0	0	0.001168	0	0	
TREM2	54209	broad.mit.edu	37	6	41126729	41126729	+	Silent	SNP	C	T	T	rs28937876		TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:41126729C>T	uc003opy.2	-	4	660	c.558G>A	c.(556-558)AAG>AAA	p.K186K	TREM2_uc003opz.2_Missense_Mutation_p.D230N|TREM2_uc010jxl.1_Intron	NM_018965	NP_061838	Q9NZC2	TREM2_HUMAN	triggering receptor expressed on myeloid cells 2	186	Helical; (Potential).		K -> N (in PLOSL).		axon guidance|humoral immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					CTGCTAGAATCTTGATGAGAA	0.572000													5	47					0	0	0.000602	0	0	
PRPH2	5961	broad.mit.edu	37	6	42689828	42689828	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:42689828C>T	uc003osk.2	-	1	531	c.245G>A	c.(244-246)TGC>TAC	p.C82Y		NM_000322	NP_000313	P23942	PRPH2_HUMAN	peripherin 2	82	Cytoplasmic (Potential).				cell adhesion|visual perception	integral to membrane				ovary(4)|central_nervous_system(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.00178)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0904)			GGCGTCGTAGCAGATCTTCCC	0.517000													6	77					0	0	0.001168	0	0	
KIAA0240	23506	broad.mit.edu	37	6	42797574	42797574	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:42797574G>C	uc003osn.1	+	6	1654	c.1503G>C	c.(1501-1503)TTG>TTC	p.L501F	KIAA0240_uc003osm.1_Missense_Mutation_p.L501F|KIAA0240_uc011duw.1_Missense_Mutation_p.L501F|KIAA0240_uc003oso.1_Missense_Mutation_p.L501F|KIAA0240_uc003osp.1_Missense_Mutation_p.L501F	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	501										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			AGATGCCCTTGCAGCAGGCAT	0.557000													9	88					0	0	0.006214	0	0	
CUL9	23113	broad.mit.edu	37	6	43173834	43173834	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:43173834G>A	uc003ouk.2	+	25	4958	c.4883G>A	c.(4882-4884)CGC>CAC	p.R1628H	CUL9_uc003oul.2_Missense_Mutation_p.R1628H|CUL9_uc010jyk.2_Missense_Mutation_p.R780H	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1628					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TTTCCCAACCGCCTCCCACAG	0.582000													6	50					0	0	0.001168	0	0	
TTBK1	84630	broad.mit.edu	37	6	43223579	43223579	+	Silent	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:43223579C>G	uc003ouq.1	+	9	1125	c.846C>G	c.(844-846)ACC>ACG	p.T282T		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	282	Protein kinase.					cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			ACTACTTCACCAAGCCCGACT	0.602000													12	79					0	0	0.010729	0	0	
HMGCLL1	54511	broad.mit.edu	37	6	55364066	55364066	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:55364066C>T	uc003pcn.2	-	7	823	c.664G>A	c.(664-666)GAA>AAA	p.E222K	HMGCLL1_uc003pco.2_Missense_Mutation_p.E192K|HMGCLL1_uc010jzx.2_Missense_Mutation_p.E93K|HMGCLL1_uc011dxc.1_Missense_Mutation_p.E160K|HMGCLL1_uc011dxd.1_Intron|HMGCLL1_uc011dxe.1_Intron	NM_019036	NP_061909	Q8TB92	HMGC2_HUMAN	3-hydroxymethyl-3-methylglutaryl-Coenzyme A	222							hydroxymethylglutaryl-CoA lyase activity|metal ion binding			skin(2)|ovary(1)|pancreas(1)	4	Lung NSC(77;0.0875)		LUSC - Lung squamous cell carcinoma(124;0.23)			ATACTTCCTTCATATGGACAG	0.308000													8	76					0	0	0.006214	0	0	
C6orf57	135154	broad.mit.edu	37	6	71298420	71298420	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:71298420A>G	uc003pfq.1	+	3	340	c.320A>G	c.(319-321)GAT>GGT	p.D107G		NM_145267	NP_660310	Q5VUM1	CF057_HUMAN	hypothetical protein LOC135154 precursor	107						extracellular region					0						CGCTGTATTGATTTTTAAGTC	0.348000													7	67					0	0	0.001984	0	0	
SH3BGRL2	83699	broad.mit.edu	37	6	80383441	80383441	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:80383441C>A	uc003piz.1	+	2	335	c.156C>A	c.(154-156)AAC>AAA	p.N52K		NM_031469	NP_113657	Q9UJC5	SH3L2_HUMAN	SH3 domain binding glutamic acid-rich protein	52						nucleus	SH3 domain binding				0		all_cancers(76;0.00188)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.174)		BRCA - Breast invasive adenocarcinoma(397;0.0278)		TGTACAAAAACGTCCCCCCGG	0.473000													12	110					0.00010058	0.000108944	0.013537	1	0	
ELOVL4	6785	broad.mit.edu	37	6	80629160	80629160	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:80629160G>A	uc003pja.3	-	5	965	c.646C>T	c.(646-648)CGA>TGA	p.R216*	ELOVL4_uc011dyt.1_Intron	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	216					fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	GTCAGGTATCGTTTCCACCAA	0.343000													5	63					0	0	0.001168	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83863234	83863234	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:83863234T>G	uc003pjs.1	+	31	6394	c.6134T>G	c.(6133-6135)TTG>TGG	p.L2045W	DOPEY1_uc011dyy.1_Missense_Mutation_p.L2036W|DOPEY1_uc010kbl.1_Missense_Mutation_p.L2036W|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2045					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TCATAGGTTTTGGCTCATCTT	0.338000													8	86					0	0	0.006214	0	0	
SLC22A16	85413	broad.mit.edu	37	6	110746263	110746263	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:110746263A>C	uc003puf.2	-	8	1614	c.1547T>G	c.(1546-1548)CTG>CGG	p.L516R	SLC22A16_uc003pue.2_Missense_Mutation_p.L497R	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	516	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		CACTCCACTCAGGAGGGCCAT	0.428000													10	86					0	0	0.006214	0	0	
RFPL4B	442247	broad.mit.edu	37	6	112670980	112670980	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:112670980C>G	uc003pvx.1	+	3	382	c.70C>G	c.(70-72)CTC>GTC	p.L24V		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	24	RING-type.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		TTCCATTTCTCTCTCTTGTAC	0.463000													5	39					0	0	0.000602	0	0	
MED23	9439	broad.mit.edu	37	6	131929185	131929185	+	Silent	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:131929185G>C	uc003qcs.1	-	12	1278	c.1104C>G	c.(1102-1104)GGC>GGG	p.G368G	MED23_uc003qcq.2_Silent_p.G374G|MED23_uc011eca.1_Intron|MED23_uc003qct.1_Silent_p.G374G|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	368					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GATGATCTCTGCCTTTAATCA	0.358000													6	68					0	0	0.001984	0	0	
IFNGR1	3459	broad.mit.edu	37	6	137524711	137524711	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:137524711C>G	uc003qho.2	-	5	761	c.658G>C	c.(658-660)GTC>CTC	p.V220L	IFNGR1_uc011edm.1_Missense_Mutation_p.V192L|IFNGR1_uc011edn.1_3'UTR	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	220	Extracellular (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	ACATGTAAGACTCCTTCTGCT	0.378000													5	65					0	0	0.000602	0	0	
GRM1	2911	broad.mit.edu	37	6	146351337	146351337	+	Silent	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:146351337T>C	uc010khw.1	+	2	1154	c.684T>C	c.(682-684)TCT>TCC	p.S228S	GRM1_uc010khu.1_Silent_p.S228S|GRM1_uc010khv.1_Silent_p.S228S|GRM1_uc003qll.2_Silent_p.S228S|GRM1_uc011edz.1_Silent_p.S228S|GRM1_uc011eea.1_Silent_p.S228S	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	228	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	CCTATGTCTCTGCAGTCCACA	0.453000													10	78					0	0	0.008291	0	0	
SNX9	51429	broad.mit.edu	37	6	158330999	158330999	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:158330999C>T	uc003qqv.1	+	9	1064	c.891C>T	c.(889-891)CTC>CTT	p.L297L		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	297	PX.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		ATGAGCGTCTCCTGGTTAAGT	0.413000													18	85					0	0	0.006122	0	0	
C6orf118	168090	broad.mit.edu	37	6	165715612	165715612	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr6:165715612T>C	uc003qum.3	-	2	235	c.199A>G	c.(199-201)AAC>GAC	p.N67D	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	67											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TAGAGCTTGTTGGGGTTCAGG	0.592000													13	85					0	0	0.002450	0	0	
GPR146	115330	broad.mit.edu	37	7	1097511	1097511	+	Silent	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:1097511C>A	uc003sjw.2	+	2	436	c.360C>A	c.(358-360)ACC>ACA	p.T120T	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPR146_uc003sjx.3_Silent_p.T120T|GPR146_uc003sjy.1_Silent_p.T120T	NM_138445	NP_612454	Q96CH1	GP146_HUMAN	G protein-coupled receptor 146	120	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		TGTACTCCACCGCCCTGCTGA	0.657000													8	75					0.00448238	0.00461876	0.004482	1	0	
NXPH1	30010	broad.mit.edu	37	7	8790784	8790784	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:8790784G>C	uc003srv.2	+	3	1112	c.201G>C	c.(199-201)GAG>GAC	p.E67D	NXPH1_uc011jxh.1_5'UTR	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	67	II.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		GTGGCAAAGAGAATGATACAG	0.473000													6	59					0	0	0.001168	0	0	
SCIN	85477	broad.mit.edu	37	7	12680057	12680057	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:12680057C>G	uc003ssn.3	+	11	1706	c.1496C>G	c.(1495-1497)TCA>TGA	p.S499*	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Nonsense_Mutation_p.S252*	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	499	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		AATGGAACATCAAAGAAAGGA	0.483000													4	44					0	0	0.009096	0	0	
TAX1BP1	8887	broad.mit.edu	37	7	27825103	27825103	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:27825103T>C	uc003szl.2	+	7	1005	c.847T>C	c.(847-849)TAT>CAT	p.Y283H	TAX1BP1_uc011jzo.1_Missense_Mutation_p.Y283H|TAX1BP1_uc003szk.2_Missense_Mutation_p.Y283H|TAX1BP1_uc011jzp.1_Missense_Mutation_p.Y126H	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	283	Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			AAAGGAACTTTATAAGGTAAT	0.204000													14	88					0	0	0.003163	0	0	
NOD1	10392	broad.mit.edu	37	7	30490931	30490931	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:30490931T>C	uc003tav.2	-	6	2625	c.2102A>G	c.(2101-2103)CAC>CGC	p.H701R		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	701					activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CTTGGGGAAGTGATGCAGGAC	0.637000													8	77					0	0	0.004482	0	0	
AMPH	273	broad.mit.edu	37	7	38534085	38534085	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:38534085T>A	uc003tgu.2	-	4	317	c.248A>T	c.(247-249)GAA>GTA	p.E83V	AMPH_uc003tgv.2_Missense_Mutation_p.E83V	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	83	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CTCATAGACTTCATGCAGCGA	0.527000													18	120					0	0	0.007413	0	0	
AUTS2	26053	broad.mit.edu	37	7	69364275	69364275	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:69364275G>T	uc003tvw.3	+	2	1056	c.313G>T	c.(313-315)GAT>TAT	p.D105Y	AUTS2_uc003tvv.3_Missense_Mutation_p.D105Y|AUTS2_uc003tvx.3_Missense_Mutation_p.D105Y	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	105										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		TCTACAGAAAGATGTAGCACT	0.433000													9	60					0.00448238	0.00461876	0.004482	1	0	
HGF	3082	broad.mit.edu	37	7	81381461	81381461	+	Silent	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:81381461G>T	uc003uhl.2	-	5	765	c.600C>A	c.(598-600)GTC>GTA	p.V200V	HGF_uc003uhm.2_Silent_p.V195V|HGF_uc003uhn.1_Silent_p.V200V|HGF_uc003uho.1_Silent_p.V195V|HGF_uc003uhp.2_Silent_p.V200V	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	200	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GAATGTCACAGACTTCGTAGC	0.458000													5	70					0.000602214	0.000636019	0.000602	1	0	
CROT	54677	broad.mit.edu	37	7	87006686	87006686	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:87006686G>A	uc003uit.2	+	10	1143	c.898G>A	c.(898-900)GGA>AGA	p.G300R	CROT_uc003uiu.2_Missense_Mutation_p.G328R	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	300					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	CATCCTTATTGGAGATCCAAC	0.294000													4	45					0	0	0.009096	0	0	
ZKSCAN5	23660	broad.mit.edu	37	7	99123675	99123675	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:99123675C>G	uc003uqv.2	+	6	1136	c.1012C>G	c.(1012-1014)CAA>GAA	p.Q338E	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.Q338E|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.Q338E|ZKSCAN5_uc003uqx.2_Missense_Mutation_p.Q265E|ZKSCAN5_uc003uqy.2_Missense_Mutation_p.Q74E	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	338					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CAGCCCTAAGCAAAGCACACA	0.512000													13	57					0	0	0.001855	0	0	
Unknown	0	broad.mit.edu	37	7	100552463	100552463	+	RNA	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:100552463C>G	uc003uxk.1	+	1		c.1714C>G			uc003uxl.1_Missense_Mutation_p.T305S					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		TCCACTGGCACTGGGACTGTA	0.493000													15	295					0	0	0.004990	0	0	
SERPINE1	5054	broad.mit.edu	37	7	100771774	100771774	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:100771774C>G	uc003uxt.2	+	2	248	c.100C>G	c.(100-102)CTG>GTG	p.L34V	SERPINE1_uc011kkj.1_Intron	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	34					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	CGTGGCCCACCTGGCCTCAGA	0.627000													14	49					0	0	0.002450	0	0	
PLOD3	8985	broad.mit.edu	37	7	100859523	100859523	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:100859523C>T	uc003uyd.2	-	4	879	c.423G>A	c.(421-423)GAG>GAA	p.E141E	ZNHIT1_uc003uye.2_5'Flank|ZNHIT1_uc003uyf.2_5'Flank	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	141					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	AGCAGAAGCTCTCTGCAGAGA	0.637000													10	30					0	0	0.006214	0	0	
LAMB1	3912	broad.mit.edu	37	7	107572669	107572669	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:107572669C>A	uc003vew.2	-	28	4677	c.4342G>T	c.(4342-4344)GAC>TAC	p.D1448Y	LAMB1_uc003vev.2_Missense_Mutation_p.D1472Y|LAMB1_uc003veu.2_5'Flank	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1448	Potential.|Domain I.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACATCTTGGTCCAAGTCCATG	0.517000													24	148					5.35047e-06	6.00009e-06	0.003330	1	0	
THAP5	168451	broad.mit.edu	37	7	108204790	108204790	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:108204790T>G	uc003vfm.2	-	3	1187	c.1033A>C	c.(1033-1035)ATA>CTA	p.I345L	THAP5_uc003vfl.2_Missense_Mutation_p.I303L	NM_001130475	NP_001123947	Q7Z6K1	THAP5_HUMAN	THAP domain containing 5 isoform 1	345					cell cycle|negative regulation of cell cycle	nucleus	DNA binding|metal ion binding|protease binding				0						AGAAGAGTTATCTTTGAATGT	0.363000													7	96					0	0	0.004482	0	0	
PAX4	5078	broad.mit.edu	37	7	127255565	127255565	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:127255565G>T	uc010lld.1	-	1	216	c.10C>A	c.(10-12)CTT>ATT	p.L4I	PAX4_uc003vmf.2_5'UTR|PAX4_uc003vmg.1_Missense_Mutation_p.L4I|PAX4_uc003vmh.2_5'UTR	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	12	Paired.				cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCCCCCCAAGCTGGTTCATG	0.632000													7	85					8.12818e-05	8.84179e-05	0.001984	1	0	
LRRC4	64101	broad.mit.edu	37	7	127670273	127670273	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:127670273C>T	uc003vmk.2	-	2	558	c.421G>A	c.(421-423)GGG>AGG	p.G141R	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	141	LRR 3.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		TCAAAGGCCCCGCTAGGGATG	0.602000													11	99					0	0	0.008291	0	0	
MLL3	58508	broad.mit.edu	37	7	151875009	151875009	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:151875009A>G	uc003wla.2	-	38	7748	c.7529T>C	c.(7528-7530)GTT>GCT	p.V2510A	MLL3_uc003wkz.2_Missense_Mutation_p.V1571A|MLL3_uc003wky.2_Missense_Mutation_p.V19A	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2510	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CTGTGGAGAAACTCCAGATCC	0.413000			N		medulloblastoma								10	93					0	0	0.010729	0	0	
MLL3	58508	broad.mit.edu	37	7	151945673	151945673	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr7:151945673C>T	uc003wla.2	-	14	2065	c.1846G>A	c.(1846-1848)GAA>AAA	p.E616K		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	616					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATCTGTTTTTCCAATTCAGTA	0.294000			N		medulloblastoma								8	43					0	0	0.003080	0	0	
PPP2R2A	5520	broad.mit.edu	37	8	26227693	26227693	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:26227693G>C	uc003xeu.2	+	10	1410	c.1108G>C	c.(1108-1110)GAC>CAC	p.D370H	PPP2R2A_uc003xek.2_Missense_Mutation_p.D371H|PPP2R2A_uc011laf.1_Missense_Mutation_p.D380H	NM_002717	NP_002708	P63151	2ABA_HUMAN	alpha isoform of regulatory subunit B55, protein	370	WD 6.				protein dephosphorylation|signal transduction	protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity			ovary(1)|kidney(1)	2		all_cancers(63;0.086)|Ovarian(32;2.61e-05)|all_epithelial(46;0.0514)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.000754)|Epithelial(17;3.02e-15)|all cancers(2;1.52e-13)|OV - Ovarian serous cystadenocarcinoma(2;1.89e-10)|Colorectal(74;0.155)		CAGAATGTTTGACAGAAACAC	0.418000													4	52					0	0	0.000602	0	0	
ADRA1A	148	broad.mit.edu	37	8	26628134	26628134	+	Silent	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:26628134T>G	uc003xfh.1	-	2	1369	c.933A>C	c.(931-933)GTA>GTC	p.V311V	ADRA1A_uc003xfc.1_Silent_p.V311V|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Silent_p.V311V|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Silent_p.V311V	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	311	Helical; Name=7; (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity	p.V311I(1)		breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	CGAGCCAAAATACTATTTTAA	0.398000													11	83					0	0	0.008291	0	0	
PRKDC	5591	broad.mit.edu	37	8	48852143	48852143	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:48852143T>C	uc003xqi.2	-	11	1138	c.1081A>G	c.(1081-1083)ATT>GTT	p.I361V	PRKDC_uc003xqj.2_Missense_Mutation_p.I361V|PRKDC_uc011ldh.1_Missense_Mutation_p.I361V	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	361					cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				CGGATAGCAATAGATAACTCC	0.343000								NHEJ					8	80					0	0	0.006214	0	0	
ASPH	444	broad.mit.edu	37	8	62479816	62479816	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:62479816G>A	uc003xuj.2	-	17	1480	c.1211C>T	c.(1210-1212)ACC>ATC	p.T404I	ASPH_uc011leg.1_Missense_Mutation_p.T375I|ASPH_uc003xuo.2_Missense_Mutation_p.T385I	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	404	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	CTCTTGGTAGGTCTCGATGGC	0.502000													8	75					0	0	0.003080	0	0	
ADHFE1	137872	broad.mit.edu	37	8	67356836	67356836	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:67356836A>G	uc003xwb.3	+	5	240	c.206A>G	c.(205-207)AAA>AGA	p.K69R	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.K21R|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_5'UTR|ADHFE1_uc011leq.1_RNA|ADHFE1_uc011ler.1_RNA	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	69					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			TAGGACCTAAAAAACATGGGT	0.408000													36	141					0	0	0.006230	0	0	
ADHFE1	137872	broad.mit.edu	37	8	67361172	67361172	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:67361172G>A	uc003xwb.3	+	8	735	c.701G>A	c.(700-702)CGA>CAA	p.R234Q	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.R186Q|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_Missense_Mutation_p.R164Q|ADHFE1_uc011leq.1_RNA|ADHFE1_uc011ler.1_RNA	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	234					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			ATGCCTGCCCGAGTGGTCGCC	0.498000													32	156					0	0	0.013726	0	0	
PDP1	54704	broad.mit.edu	37	8	94934857	94934857	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:94934857C>T	uc003yge.2	+	2	839	c.570C>T	c.(568-570)CTC>CTT	p.L190L	PDP1_uc003ygf.2_Silent_p.L215L|PDP1_uc010max.2_Silent_p.L215L|PDP1_uc011lgm.1_Silent_p.L190L|PDP1_uc011lgn.1_Silent_p.L249L	NM_018444	NP_060914	Q9P0J1	PDP1_HUMAN	pyruvate dehyrogenase phosphatase catalytic	190					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						TACCCATTCTCCAGTGGCACA	0.438000													6	92					0	0	0.001168	0	0	
VPS13B	157680	broad.mit.edu	37	8	100026063	100026063	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:100026063G>C	uc003yiv.2	+	2	158	c.47G>C	c.(46-48)CGC>CCC	p.R16P	VPS13B_uc003yiw.2_Missense_Mutation_p.R16P|VPS13B_uc003yit.2_Missense_Mutation_p.R16P|VPS13B_uc003yiu.1_Missense_Mutation_p.R16P|VPS13B_uc003yis.2_Missense_Mutation_p.R16P|VPS13B_uc011lgy.1_5'UTR	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	16					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TATGTGAATCGCTACATCAAG	0.438000													11	182					0	0	0.008291	0	0	
RIMS2	9699	broad.mit.edu	37	8	104930682	104930682	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:104930682A>T	uc003yls.2	+	7	1625	c.1384A>T	c.(1384-1386)ATA>TTA	p.I462L	RIMS2_uc003ylp.2_Missense_Mutation_p.I684L|RIMS2_uc003ylw.2_Missense_Mutation_p.I492L|RIMS2_uc003ylq.2_Missense_Mutation_p.I492L|RIMS2_uc003ylr.2_Missense_Mutation_p.I539L|RIMS2_uc003ylt.2_Missense_Mutation_p.I85L|RIMS2_uc003ylu.1_Missense_Mutation_p.I75L|RIMS2_uc003ylv.1_Missense_Mutation_p.I75L	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	762					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TATACCGCGAATACCTGATAG	0.294000										HNSCC(12;0.0054)			6	37					0	0	0.001984	0	0	
ABRA	137735	broad.mit.edu	37	8	107781917	107781917	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:107781917A>G	uc003ymm.3	-	1	556	c.502T>C	c.(502-504)TCT>CCT	p.S168P		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	168					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GTTAGCTCAGACACCAGGTTG	0.577000													20	186					0	0	0.007413	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110509186	110509186	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:110509186G>T	uc003yne.2	+	64	10470	c.10366G>T	c.(10366-10368)GCC>TCC	p.A3456S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3456	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGACAATGAAGCCCATGGAGG	0.378000										HNSCC(38;0.096)			10	96					1.58986e-06	1.79878e-06	0.008291	1	0	
CSMD3	114788	broad.mit.edu	37	8	113259259	113259259	+	Silent	SNP	A	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:113259259A>T	uc003ynu.2	-	64	10371	c.10212T>A	c.(10210-10212)CCT>CCA	p.P3404P	CSMD3_uc003yns.2_Silent_p.P2606P|CSMD3_uc003ynt.2_Silent_p.P3364P|CSMD3_uc011lhx.1_Silent_p.P3235P	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3404	Extracellular (Potential).|Sushi 27.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTATGCATTCAGGCTGAATCC	0.383000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	57					0	0	0.003080	0	0	
CSMD3	114788	broad.mit.edu	37	8	113871387	113871387	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:113871387A>C	uc003ynu.2	-	11	1901	c.1742T>G	c.(1741-1743)GTG>GGG	p.V581G	CSMD3_uc003ynt.2_Missense_Mutation_p.V541G|CSMD3_uc011lhx.1_Missense_Mutation_p.V477G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	581	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATTTGTATTCACTGCTGTGAT	0.383000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	72					0	0	0.001168	0	0	
SLC30A8	169026	broad.mit.edu	37	8	118175718	118175718	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:118175718T>A	uc003yoh.2	+	6	1008	c.778T>A	c.(778-780)TTG>ATG	p.L260M	SLC30A8_uc010mcz.2_Missense_Mutation_p.L211M|SLC30A8_uc011lia.1_Missense_Mutation_p.L211M|SLC30A8_uc003yog.2_Missense_Mutation_p.L211M	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	260	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CATCCTGGTCTTGGCCAGCAC	0.403000													6	107					0	0	0.003080	0	0	
FER1L6	654463	broad.mit.edu	37	8	125029939	125029939	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr8:125029939C>T	uc003yqw.2	+	16	2200	c.1994C>T	c.(1993-1995)ACG>ATG	p.T665M	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	665	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAGCGACTTACGCTCTGCTGG	0.378000													9	77					0	0	0.004482	0	0	
KANK1	23189	broad.mit.edu	37	9	712605	712605	+	Silent	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:712605C>T	uc003zgl.1	+	7	2488	c.1839C>T	c.(1837-1839)CTC>CTT	p.L613L	KANK1_uc003zgm.2_Silent_p.L613L|KANK1_uc003zgn.1_Silent_p.L613L|KANK1_uc003zgo.1_Silent_p.L613L|KANK1_uc003zgp.1_Silent_p.L613L|KANK1_uc003zgq.2_Silent_p.L455L|KANK1_uc003zgr.1_Silent_p.L455L|KANK1_uc003zgs.1_Silent_p.L455L	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	613					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TGAACGACCTCACACTCCTCA	0.512000													11	73					0	0	0.008291	0	0	
INSL6	11172	broad.mit.edu	37	9	5164104	5164104	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:5164104G>T	uc003zix.2	-	2	467	c.451C>A	c.(451-453)CGT>AGT	p.R151S		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	151						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		TTGTTTCTACGTTTCTTCTGA	0.338000													6	66					0.00198382	0.00206512	0.001984	1	0	
FREM1	158326	broad.mit.edu	37	9	14859323	14859323	+	Nonsense_Mutation	SNP	A	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:14859323A>C	uc003zlm.2	-	4	1079	c.489T>G	c.(487-489)TAT>TAG	p.Y163*	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	163					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CCATCCTATCATAATCGAATC	0.507000													11	140					0	0	0.001855	0	0	
KIAA1045	23349	broad.mit.edu	37	9	34972446	34972446	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:34972446G>A	uc003zvq.2	+	3	660	c.482G>A	c.(481-483)CGC>CAC	p.R161H	KIAA1045_uc003zvr.2_Missense_Mutation_p.R161H	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	161	PHD-type.						calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			TGCCTGCGCCGCATGGGCTAC	0.577000													10	106					0	0	0.008291	0	0	
CD72	971	broad.mit.edu	37	9	35612891	35612891	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:35612891G>T	uc003zxb.2	-	6	912	c.788C>A	c.(787-789)ACT>AAT	p.T263N	CD72_uc003zxc.1_Missense_Mutation_p.T48N|CD72_uc010mkt.1_Missense_Mutation_p.T48N|CD72_uc010mku.2_Missense_Mutation_p.T263N	NM_001782	NP_001773	P21854	CD72_HUMAN	CD72 molecule	263	C-type lectin.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	receptor binding|sugar binding|transmembrane receptor activity				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GGAAGACAGAGTTTCACATTG	0.423000													15	158					3.27435e-08	3.76328e-08	0.002450	1	0	
TLN1	7094	broad.mit.edu	37	9	35704345	35704345	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:35704345T>A	uc003zxt.2	-	45	6385	c.6031A>T	c.(6031-6033)ACT>TCT	p.T2011S		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2011					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TCAGCGAAAGTTTCAGTACCC	0.587000													19	136					0	0	0.007413	0	0	
SHC3	53358	broad.mit.edu	37	9	91628480	91628480	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:91628480T>C	uc004aqg.2	-	12	1974	c.1667A>G	c.(1666-1668)AAG>AGG	p.K556R		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	556	SH2.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						GACTCTGTCCTTTGTCCGGAT	0.488000													8	86					0	0	0.003080	0	0	
AUH	549	broad.mit.edu	37	9	93983218	93983218	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:93983218A>G	uc004arf.3	-	7	747	c.712T>C	c.(712-714)TTC>CTC	p.F238L	AUH_uc004arg.3_Missense_Mutation_p.F209L	NM_001698	NP_001689	Q13825	AUHM_HUMAN	AU RNA binding protein/enoyl-Coenzyme A	238					branched chain family amino acid catabolic process|mRNA catabolic process	mitochondrial matrix	enoyl-CoA hydratase activity|methylglutaconyl-CoA hydratase activity|mRNA 3'-UTR binding				0						CGCGCAGAGAATATGAGCTCC	0.557000													9	95					0	0	0.008291	0	0	
ECM2	1842	broad.mit.edu	37	9	95258657	95258657	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:95258657G>C	uc004ash.2	-	10	2105	c.2040C>G	c.(2038-2040)TAC>TAG	p.Y680*	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Intron|ECM2_uc011lty.1_Nonsense_Mutation_p.Y680*|ECM2_uc004asg.2_Nonsense_Mutation_p.Y658*|ECM2_uc010mqz.1_Nonsense_Mutation_p.Y102*	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	680	LRR 13.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						ATGAAAATGTGTAAGATGGTA	0.303000													8	92					0	0	0.003080	0	0	
FAM120A	23196	broad.mit.edu	37	9	96312912	96312912	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:96312912C>G	uc004atw.2	+	12	2238	c.2213C>G	c.(2212-2214)GCC>GGC	p.A738G	FAM120A_uc004aty.2_Missense_Mutation_p.A519G|FAM120A_uc004atz.2_Missense_Mutation_p.A387G|FAM120A_uc010mrg.2_Missense_Mutation_p.A51G	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	738						cytoplasm|plasma membrane	RNA binding				0						GAGCTAGATGCCTTCCTGGCT	0.557000													9	54					0	0	0.004482	0	0	
GRIN3A	116443	broad.mit.edu	37	9	104335715	104335715	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:104335715C>G	uc004bbp.1	-	9	3690	c.3089G>C	c.(3088-3090)AGT>ACT	p.S1030T	GRIN3A_uc004bbo.1_Missense_Mutation_p.S105T	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	1030	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TTCCTCATCACTAAAGATGTA	0.512000													7	131					0	0	0.003080	0	0	
FKTN	2218	broad.mit.edu	37	9	108337325	108337325	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:108337325C>G	uc004bcr.2	+	3	228	c.12C>G	c.(10-12)ATC>ATG	p.I4M	FKTN_uc011lvx.1_Missense_Mutation_p.I4M|FKTN_uc004bcs.2_Missense_Mutation_p.I4M|FKTN_uc011lvy.1_Missense_Mutation_p.I4M|FKTN_uc010mtm.2_Translation_Start_Site	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	4	Cytoplasmic (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						TGAGTAGAATCAATAAGAACG	0.353000													7	84					0	0	0.003080	0	0	
TMEM38B	55151	broad.mit.edu	37	9	108484874	108484874	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:108484874G>C	uc004bcu.1	+	4	631	c.514G>C	c.(514-516)GAA>CAA	p.E172Q	TMEM38B_uc010mtn.1_Intron	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	172	Lumenal (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						TTGGAAACCAGAAGGTGATGA	0.323000													9	110					0	0	0.010729	0	0	
LPAR1	1902	broad.mit.edu	37	9	113703796	113703796	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:113703796C>T	uc004bfa.2	-	4	953	c.698G>A	c.(697-699)CGC>CAC	p.R233H	LPAR1_uc011lwm.1_Missense_Mutation_p.R234H|LPAR1_uc004bfb.2_Missense_Mutation_p.R233H|LPAR1_uc004bfc.2_Missense_Mutation_p.R233H|LPAR1_uc011lwn.1_Missense_Mutation_p.R215H|LPAR1_uc011lwo.1_Missense_Mutation_p.R234H|LPAR1_uc010mub.2_Missense_Mutation_p.R233H	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	233	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						AGTCCTCTGGCGAACATAGCC	0.483000													19	81					0	0	0.007413	0	0	
ZNF883	169834	broad.mit.edu	37	9	115759828	115759828	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:115759828C>G	uc011lwy.1	-	5	1951	c.712G>C	c.(712-714)GAG>CAG	p.E238Q		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	238	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCATTACACTCATAGGGTTTT	0.418000													5	61					0	0	0.001984	0	0	
DFNB31	25861	broad.mit.edu	37	9	117266496	117266496	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:117266496G>C	uc004biz.3	-	1	1235	c.586C>G	c.(586-588)CTG>GTG	p.L196V	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Missense_Mutation_p.L196V|DFNB31_uc004bjb.2_Missense_Mutation_p.L196V	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	196	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ACCCGGGCCAGGGATTTGTCG	0.443000													6	109					0	0	0.001168	0	0	
OR1L1	26737	broad.mit.edu	37	9	125423975	125423975	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:125423975C>G	uc011lza.1	+	1	131	c.131C>G	c.(130-132)TCT>TGT	p.S44C		NM_001005236	NP_001005236	Q8NH94	OR1L1_HUMAN	olfactory receptor, family 1, subfamily L,	44	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						GTTAGTTTATCTTTAGGTGAA	0.378000													10	72					0	0	0.006214	0	0	
RABGAP1	23637	broad.mit.edu	37	9	125863928	125863928	+	Silent	SNP	T	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:125863928T>A	uc011lzh.1	+	25	3107	c.2973T>A	c.(2971-2973)GTT>GTA	p.V991V	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Silent_p.V330V	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	991	Potential.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						CCAAGGAGGTTTTAGATGAGG	0.478000													7	45					0	0	0.001984	0	0	
SPTAN1	6709	broad.mit.edu	37	9	131394978	131394978	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:131394978G>A	uc004bvl.3	+	54	7239	c.7126G>A	c.(7126-7128)GAC>AAC	p.D2376N	SPTAN1_uc004bvm.3_Missense_Mutation_p.D2381N|SPTAN1_uc004bvn.3_Missense_Mutation_p.D2356N|SPTAN1_uc004bvo.3_Missense_Mutation_p.D143N|SPTAN1_uc004bvp.3_Missense_Mutation_p.D119N	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	2376	EF-hand 2.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						GGCAATCCTGGACACGGTGGA	0.597000													7	64					0	0	0.001984	0	0	
DOLK	22845	broad.mit.edu	37	9	131708695	131708695	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:131708695G>A	uc004bwr.2	-	1	1318	c.888C>T	c.(886-888)ACC>ACT	p.T296T	NUP188_uc004bws.1_5'Flank|NUP188_uc004bwq.1_Intron	NM_014908	NP_055723	Q9UPQ8	DOLK_HUMAN	dolichol kinase	296	Lumenal (Potential).				dolichyl diphosphate biosynthetic process|dolichyl monophosphate biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to endoplasmic reticulum membrane|membrane fraction	dolichol kinase activity				0						GGTAGATGCGGGTGTCTGTCT	0.587000													13	134					0	0	0.001855	0	0	
BRD3	8019	broad.mit.edu	37	9	136910450	136910450	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:136910450C>A	uc004cew.2	-	7	1368	c.1180G>T	c.(1180-1182)GAC>TAC	p.D394Y	BRD3_uc004cex.2_Missense_Mutation_p.D394Y	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	394	Bromo 2.					nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		ACCTCGTGGTCTGGGGGATTG	0.602000			T	NUT|C15orf55	lethal midline carcinoma of young people								16	89					0.000308642	0.0003287	0.003163	1	0	
IL3RA	3563	broad.mit.edu	37	X	1460718	1460718	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:1460718G>C	uc004cps.2	+	2	409	c.60G>C	c.(58-60)AAG>AAC	p.K20N	IL3RA_uc011mhd.1_Missense_Mutation_p.K20N	NM_002183	NP_002174	P26951	IL3RA_HUMAN	interleukin 3 receptor, alpha precursor	20	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-3 receptor activity			skin(2)|lung(1)	3		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TGCAAACGAAGGAAGGTAAGA	0.572000													13	123					0	0	0.002450	0	0	
GK	2710	broad.mit.edu	37	X	30686201	30686201	+	Silent	SNP	T	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:30686201T>G	uc004dch.3	+	3	404	c.225T>G	c.(223-225)CTT>CTG	p.L75L	GK_uc010ngj.2_Silent_p.L75L|GK_uc004dci.3_Silent_p.L75L|GK_uc011mjz.1_5'UTR|GK_uc011mka.1_Intron|GK_uc010ngk.2_Intron	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	75					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						GTGAGAAACTTGGACAGCTCA	0.313000													7	27					0	0	0.001984	0	0	
DGKK	139189	broad.mit.edu	37	X	50146111	50146111	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:50146111C>G	uc010njr.1	-	7	1316	c.1256G>C	c.(1255-1257)TGT>TCT	p.C419S		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	419	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					ATAACTGCCACAGCTCTCATG	0.463000													4	15					0	0	0.000602	0	0	
ERCC6L	54821	broad.mit.edu	37	X	71425290	71425290	+	Silent	SNP	G	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:71425290G>A	uc004eaq.1	-	2	3424	c.3327C>T	c.(3325-3327)GAC>GAT	p.D1109D	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Silent_p.D986D	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	1109					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					TTTCCTCCATGTCCTCCACGT	0.448000													24	52					0	0	0.002780	0	0	
ATP7A	538	broad.mit.edu	37	X	77267114	77267114	+	Silent	SNP	T	C	C			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:77267114T>C	uc004ecx.3	+	9	2275	c.2115T>C	c.(2113-2115)ATT>ATC	p.I705I	ATP7A_uc004ecw.2_3'UTR	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	705	Extracellular (Potential).				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						AGCGCCAGATTCTTCCAGGAT	0.343000													20	133					0	0	0.003330	0	0	
NSDHL	50814	broad.mit.edu	37	X	152014936	152014936	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:152014936C>A	uc004fgt.1	+	3	329	c.68C>A	c.(67-69)CCC>CAC	p.P23H	NSDHL_uc004fgs.1_Missense_Mutation_p.P23H	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	23					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	GAGGACACTCCCAAAGTGAAT	0.438000													23	31					7.76418e-22	9.39097e-22	0.005443	1	0	
HCFC1	3054	broad.mit.edu	37	X	153220024	153220024	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chrX:153220024C>T	uc004fjp.2	-	17	4354	c.3826G>A	c.(3826-3828)GAG>AAG	p.E1276K		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1276					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGTGCCTCCAGGGCTGTC	0.662000													12	58					0	0	0.010729	0	0	
AP1B1	162	broad.mit.edu	37	22	29736691	29736691	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr22:29736691delA	uc003afj.2	-	14	2136	c.1952delT	c.(1951-1953)GTGfs	p.V651fs	AP1B1_uc003afi.2_Frame_Shift_Del_p.V651fs|AP1B1_uc003afk.2_Frame_Shift_Del_p.V651fs|AP1B1_uc003afl.2_Frame_Shift_Del_p.V651fs|AP1B1_uc011ako.1_Frame_Shift_Del_p.V204fs	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	651	Pro-rich (stalk region).				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						TCCCATCTGCACCGAGGAGGT	0.627													2	4	---	---	---	---						.
CACNA1B	774	broad.mit.edu	37	9	141015241	141015241	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CD-8529-01A-11D-2340-08	TCGA-CD-8529-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	931b24da-5d6d-4c2d-8de9-ef32d6eb8565	5faa05c2-24b8-4af2-8552-4d60486c0bcd	g.chr9:141015241delT	uc004cog.2	+	45	6542	c.6397delT	c.(6397-6399)TTTfs	p.F2133fs	CACNA1B_uc004coi.2_Frame_Shift_Del_p.F1345fs	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	2133	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	CTGCGACCGCTTTGGGGGCCG	0.706													2	4	---	---	---	---						.
