Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
NBPF9	400818	broad.mit.edu	37	1	144823868	144823868	+	Missense_Mutation	SNP	T	G	G			TCGA-FP-8209-01A-11D-2340-08	TCGA-FP-8209-11A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	b379db23-0a52-4758-8511-6ab09c95f18c	1b97b4d8-4c58-4014-8c82-7e933a3357ff	g.chr1:144823868T>G	uc009wig.1	+	17	1985	c.1909T>G	c.(1909-1911)TAT>GAT	p.Y637D	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.Y438D|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Y297D	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	637	NBPF 4.					cytoplasm					0						GGACTCACTGTATAGATGTTA	0.478000													5	0					0	0	1	0	0	
C15orf21	283651	broad.mit.edu	37	15	45848224	45848224	+	RNA	SNP	G	T	T			TCGA-FP-8209-01A-11D-2340-08	TCGA-FP-8209-11A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	b379db23-0a52-4758-8511-6ab09c95f18c	1b97b4d8-4c58-4014-8c82-7e933a3357ff	g.chr15:45848224G>T	uc010beg.1	+	6		c.1219G>T			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TGCAGATTTTGTTTAGCTTTT	0.318000			T	ETV1	prostate								7	18					2.7689e-08	2.7689e-08	1	1	0	
Unknown	0	broad.mit.edu	37	16	18442416	18442416	+	Missense_Mutation	SNP	A	G	G			TCGA-FP-8209-01A-11D-2340-08	TCGA-FP-8209-11A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	b379db23-0a52-4758-8511-6ab09c95f18c	1b97b4d8-4c58-4014-8c82-7e933a3357ff	g.chr16:18442416A>G	uc010bvw.2	-	6	958	c.302T>C	c.(301-303)CTC>CCC	p.L101P						SubName: Full=cDNA FLJ59085, highly similar to Polycystin-1;																		GGGGGCCCCGAGTAGCCCTGG	0.692000													3	10					0	0	1	0	0	
JUND	3727	broad.mit.edu	37	19	18391902	18391902	+	Silent	SNP	G	A	A			TCGA-FP-8209-01A-11D-2340-08	TCGA-FP-8209-11A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	b379db23-0a52-4758-8511-6ab09c95f18c	1b97b4d8-4c58-4014-8c82-7e933a3357ff	g.chr19:18391902G>A	uc002nip.2	-	1	531	c.393C>T	c.(391-393)AGC>AGT	p.S131S	hsa-mir-3188|MI0014232_5'Flank	NM_005354	NP_005345	P17535	JUND_HUMAN	jun D proto-oncogene	131					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						CCTGCTCCTCGCTGGCCGCCA	0.572000													3	12					0	0	1	0	0	
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-FP-8209-01A-11D-2340-08	TCGA-FP-8209-11A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	b379db23-0a52-4758-8511-6ab09c95f18c	1b97b4d8-4c58-4014-8c82-7e933a3357ff	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													4	50					0	0	1	0	0	
