Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
AGRN	375790	broad.mit.edu	37	1	978821	978821	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:978821G>A	uc001ack.1	+	8	1637	c.1587G>A	c.(1585-1587)GCG>GCA	p.A529A		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	529	Kazal-like 5.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		TCCAGGTGGCGCGCAAAGGAC	0.687000													7	10					0	0	0.004482	0	0	
ACAP3	116983	broad.mit.edu	37	1	1235945	1235945	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:1235945C>A	uc001aeb.2	-	6	540	c.466G>T	c.(466-468)GCC>TCC	p.A156S	ACAP3_uc001ady.2_5'Flank|ACAP3_uc001aea.2_Missense_Mutation_p.A114S|ACAP3_uc001aec.1_Missense_Mutation_p.A114S	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	156					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						AGGGTGAGGGCCCCGGTGGCT	0.677000													13	29					0.00136819	0.00142404	0.013537	1	0	
PRAMEF1	65121	broad.mit.edu	37	1	12853478	12853478	+	Silent	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:12853478G>T	uc001auj.1	+	2	205	c.102G>T	c.(100-102)GTG>GTT	p.V34V		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	34											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGCCCAGGGTGCTCTATCTCC	0.612000													78	108					1.58458e-29	1.95202e-29	0.014410	1	0	
PRAMEF2	65122	broad.mit.edu	37	1	12920109	12920109	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:12920109C>T	uc001aum.1	+	3	936	c.849C>T	c.(847-849)CAC>CAT	p.H283H		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	283											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAGTGGGCACCTGGAACAGC	0.463000													10	106					0	0	0.006214	0	0	
PRAMEF2	65122	broad.mit.edu	37	1	12920128	12920128	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:12920128T>C	uc001aum.1	+	3	953	c.866_splice	c.e3+2	p.R289_splice		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2												0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTGATCAGGTGAGAAAGGAT	0.478000													8	99					0	0	0.003080	0	0	
ELAVL4	1996	broad.mit.edu	37	1	50659454	50659454	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:50659454G>A	uc001csb.2	+	4	640	c.372G>A	c.(370-372)CCG>CCA	p.P124P	ELAVL4_uc001cry.3_Silent_p.P127P|ELAVL4_uc001crz.3_Silent_p.P124P|ELAVL4_uc001csa.3_Silent_p.P141P|ELAVL4_uc001csc.3_Silent_p.P124P|ELAVL4_uc009vyu.2_Silent_p.P129P|ELAVL4_uc010omz.1_Silent_p.P129P	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	124	RRM 1.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						ATGCCCGTCCGAGCTCTGCCT	0.502000													37	60					0	0	0.004289	0	0	
PODN	127435	broad.mit.edu	37	1	53544373	53544373	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:53544373C>T	uc001cuv.2	+	8	1342	c.1335C>T	c.(1333-1335)CGC>CGT	p.R445R	PODN_uc001cuw.2_Silent_p.R426R|PODN_uc010onr.1_Silent_p.R426R|PODN_uc010ons.1_Silent_p.R303R	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	397	LRR 13.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding	p.R445H(1)		ovary(1)|pancreas(1)	2						GCATTGGCCGCGAAGACTTTG	0.642000													52	73					0	0	0.014410	0	0	
LEPR	3953	broad.mit.edu	37	1	66085680	66085680	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:66085680C>A	uc001dci.2	+	17	2667	c.2465C>A	c.(2464-2466)CCA>CAA	p.P822Q	LEPR_uc001dcg.2_Missense_Mutation_p.P822Q|LEPR_uc001dch.2_Missense_Mutation_p.P822Q|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.P822Q|LEPR_uc001dck.2_Missense_Mutation_p.P822Q	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	822	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		GTGGGAAAACCAAAGATAATT	0.328000													6	40					0.00116845	0.00122112	0.001168	1	0	
GBP1	2633	broad.mit.edu	37	1	89523769	89523769	+	Silent	SNP	G	T	T	rs1048410		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:89523769G>T	uc001dmx.2	-	6	1000	c.780C>A	c.(778-780)CCC>CCA	p.P260P		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	260					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		GCACAAATTCGGGGTCCAGCT	0.458000													25	218					5.35356e-11	6.12178e-11	0.016522	1	0	
GFI1	2672	broad.mit.edu	37	1	92949026	92949026	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:92949026C>T	uc001dou.3	-	2	183	c.19G>A	c.(19-21)GTC>ATC	p.V7I	GFI1_uc001dov.3_Missense_Mutation_p.V7I|GFI1_uc001dow.3_Missense_Mutation_p.V7I	NM_001127215	NP_001120687	Q99684	GFI1_HUMAN	growth factor independent 1	7					negative regulation of calcidiol 1-monooxygenase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription involved in G1/S phase of mitotic cell cycle|transcription, DNA-dependent|viral reproduction	nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)	1		all_lung(203;0.00292)|Lung NSC(277;0.0115)|all_neural(321;0.185)|Glioma(108;0.203)		OV - Ovarian serous cystadenocarcinoma(397;9.04e-07)|Epithelial(280;1.17e-05)|all cancers(265;5.61e-05)|GBM - Glioblastoma multiforme(16;0.0191)		TTGCTTTTGACGAGAAATGAG	0.627000													8	16					0	0	0.004482	0	0	
LCE3A	353142	broad.mit.edu	37	1	152595412	152595412	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:152595412C>T	uc010pdt.1	-	1	168	c.168G>A	c.(166-168)AGG>AGA	p.R56R		NM_178431	NP_848518	Q5TA76	LCE3A_HUMAN	late cornified envelope 3A	56					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACGGTGAGACCTGCGGCATC	0.652000													46	51					0	0	0.014410	0	0	
IL6R	3570	broad.mit.edu	37	1	154437709	154437709	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:154437709C>T	uc001fez.1	+	10	1697	c.1260C>T	c.(1258-1260)CCC>CCT	p.P420P	IL6R_uc001ffa.1_3'UTR	NM_000565	NP_000556	P08887	IL6RA_HUMAN	interleukin 6 receptor isoform 1 precursor	420	Cytoplasmic (Potential).				acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity			ovary(3)|breast(1)	4	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GGCCTCGACCCACCCCAGTGC	0.622000													36	71					0	0	0.015359	0	0	
CD5L	922	broad.mit.edu	37	1	157803062	157803062	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:157803062T>A	uc001frk.3	-	5	1102	c.959A>T	c.(958-960)CAG>CTG	p.Q320L		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	320	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTCCAGGGACTGCTCCTCCCC	0.572000													41	85					0	0	0.006999	0	0	
ATP1B1	481	broad.mit.edu	37	1	169096600	169096600	+	RNA	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:169096600C>T	uc001gfs.1	+	4		c.642C>T			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					GAGGGCAAACCGTGCATTATT	0.378000													38	50					0	0	0.004878	0	0	
KIF14	9928	broad.mit.edu	37	1	200567489	200567489	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:200567489C>T	uc010ppk.1	-	14	2864	c.2425G>A	c.(2425-2427)GAT>AAT	p.D809N	KIF14_uc010ppj.1_Missense_Mutation_p.D318N	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	809					microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						AGTTGTGGATCTTCATTCAGA	0.328000													33	39					0	0	0.013726	0	0	
ADORA1	134	broad.mit.edu	37	1	203134855	203134855	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:203134855A>C	uc001gze.1	+	4	1241	c.808A>C	c.(808-810)ACC>CCC	p.T270P	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Missense_Mutation_p.T270P|ADORA1_uc010pqg.1_Missense_Mutation_p.T202P|ADORA1_uc009xak.1_Missense_Mutation_p.Y195S|ADORA1_uc010pqh.1_Missense_Mutation_p.T303P	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	270	Helical; Name=7; (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CAGCATCCTTACCTACATTGC	0.557000													40	73					0	0	0.007835	0	0	
MARK1	4139	broad.mit.edu	37	1	220835358	220835358	+	Silent	SNP	C	T	T	rs141632214		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:220835358C>T	uc001hmn.3	+	18	2835	c.2238C>T	c.(2236-2238)GAC>GAT	p.D746D	MARK1_uc009xdw.2_Silent_p.D747D|MARK1_uc010pun.1_Silent_p.D731D|MARK1_uc001hmm.3_Silent_p.D709D	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	746	KA1.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TCCATGGAGACGCTAGACAGG	0.438000													50	26					0	0	0.014410	0	0	
OBSCN	84033	broad.mit.edu	37	1	228432152	228432152	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:228432152G>T	uc009xez.1	+	11	3405	c.3361G>T	c.(3361-3363)GGC>TGC	p.G1121C	OBSCN_uc001hsn.2_Missense_Mutation_p.G1121C	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1121	Ig-like 11.		G -> R.		apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTCAAAAGTGGGCATGGAGGT	0.637000													12	73					2.27111e-07	2.48555e-07	0.013537	1	0	
LYST	1130	broad.mit.edu	37	1	235973152	235973152	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:235973152C>A	uc001hxj.2	-	5	1141	c.966G>T	c.(964-966)TTG>TTT	p.L322F	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.L322F	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	322					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TCCTTTGAATCAAAGCCACCG	0.443000									Chediak-Higashi_syndrome				4	40					0.00024832	0.00026384	0.009096	1	0	
RYR2	6262	broad.mit.edu	37	1	237947996	237947996	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:237947996A>G	uc001hyl.1	+	90	13104	c.12984A>G	c.(12982-12984)GCA>GCG	p.A4328A	RYR2_uc010pya.1_Silent_p.A743A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4328					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCAAAGTTGCAGAACTGTTAG	0.562000													5	54					0	0	0.014758	0	0	
USP6NL	9712	broad.mit.edu	37	10	11505340	11505340	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:11505340G>A	uc001ikt.3	-	15	1908	c.1587C>T	c.(1585-1587)AAC>AAT	p.N529N	USP6NL_uc001iks.1_Silent_p.N546N	NM_014688	NP_055503	Q92738	US6NL_HUMAN	USP6 N-terminal like isoform 1	529						intracellular	Rab GTPase activator activity				0						TTGGCCGCACGTTTGACACCC	0.642000													43	117					0	0	0.008740	0	0	
MPP7	143098	broad.mit.edu	37	10	28347495	28347495	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:28347495C>T	uc001iua.1	-	17	1740	c.1336G>A	c.(1336-1338)GGC>AGC	p.G446S	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.G446S|MPP7_uc009xla.2_Missense_Mutation_p.G446S|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	446	Guanylate kinase-like.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						ATACTTGTGCCGTAGTAGTTG	0.323000													59	108					0	0	0.014410	0	0	
RBP3	5949	broad.mit.edu	37	10	48389994	48389994	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:48389994G>A	uc001jez.2	-	1	998	c.884C>T	c.(883-885)ACG>ATG	p.T295M		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	295	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCCCTCCCACGTCTGGCTGCC	0.692000													30	22					0	0	0.007291	0	0	
DKK1	22943	broad.mit.edu	37	10	54074279	54074279	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:54074279G>T	uc001jjr.2	+	1	239	c.85G>T	c.(85-87)GTG>TTG	p.V29L	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor	29					negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TCTGCTGGGAGTGAGCGCCAC	0.657000											OREG0020191	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	105					5.18039e-06	5.62128e-06	0.003080	1	0	
SORCS1	114815	broad.mit.edu	37	10	108923844	108923844	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:108923844C>T	uc001kym.2	-	1	449	c.441G>A	c.(439-441)CCG>CCA	p.P147P	SORCS1_uc001kyl.2_Silent_p.P147P|SORCS1_uc009xxs.2_Silent_p.P147P|SORCS1_uc001kyn.1_Silent_p.P147P|SORCS1_uc001kyo.2_Silent_p.P147P	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	147	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGGCTTTGTCCGGGTCCCGCT	0.647000													28	26					0	0	0.007291	0	0	
ATRNL1	26033	broad.mit.edu	37	10	117075045	117075045	+	Silent	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:117075045T>C	uc001lcg.2	+	18	3222	c.2836T>C	c.(2836-2838)TTG>CTG	p.L946L	ATRNL1_uc010qsm.1_Silent_p.L121L|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	946	PSI 5.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTGTTCTGGATTGAGAACCTG	0.383000													21	54					0	0	0.008871	0	0	
PNLIPRP3	119548	broad.mit.edu	37	10	118196292	118196292	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:118196292C>T	uc001lcl.3	+	2	220	c.119C>T	c.(118-120)ACA>ATA	p.T40I		NM_001011709	NP_001011709	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3 precursor	40					lipid catabolic process	extracellular region	triglyceride lipase activity			ovary(1)	1				all cancers(201;0.0131)		ACTTTCTCAACAGAGTTGGTA	0.433000													35	66					0	0	0.013726	0	0	
SEC23IP	11196	broad.mit.edu	37	10	121652327	121652327	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:121652327C>T	uc001leu.1	+	1	105	c.33C>T	c.(31-33)GGC>GGT	p.G11G	SEC23IP_uc010qtc.1_5'UTR	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	11	Interaction with SEC23A.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		GTGGCAGCGGCGGCGCCTCCA	0.617000													4	24					0	0	0.009096	0	0	
DMBT1	1755	broad.mit.edu	37	10	124390531	124390531	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:124390531G>A	uc001lgk.1	+	46	5799	c.5693G>A	c.(5692-5694)CGT>CAT	p.R1898H	DMBT1_uc001lgl.1_Missense_Mutation_p.R1888H|DMBT1_uc001lgm.1_Missense_Mutation_p.R1270H|DMBT1_uc009xzz.1_Missense_Mutation_p.R1898H|DMBT1_uc010qtx.1_Missense_Mutation_p.R618H|DMBT1_uc009yab.1_Missense_Mutation_p.R601H|DMBT1_uc009yac.1_Missense_Mutation_p.R192H	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1898	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGTGCCGGGCGTGTAGAAATT	0.493000													16	27					0	0	0.004007	0	0	
FOXI2	399823	broad.mit.edu	37	10	129536928	129536928	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr10:129536928C>T	uc009yas.2	+	2	656	c.656C>T	c.(655-657)GCG>GTG	p.A219V	uc009yar.1_5'Flank	NM_207426	NP_997309	Q6ZQN5	FOXI2_HUMAN	forkhead box I2	219					epidermal cell fate specification|otic placode formation|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_epithelial(44;0.0021)|all_lung(145;0.0586)|Lung NSC(174;0.0765)|all_neural(114;0.201)|Glioma(114;0.222)				GAGGCGCCAGCGCTGGAGCCC	0.687000													6	6					0	0	0.001168	0	0	
OR51S1	119692	broad.mit.edu	37	11	4870119	4870119	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:4870119A>T	uc010qyo.1	-	1	320	c.320T>A	c.(319-321)CTA>CAA	p.L107Q		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AACCATCTGTAGAAGGCAGGC	0.542000													8	94					0	0	0.003080	0	0	
UBQLNL	143630	broad.mit.edu	37	11	5537086	5537086	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:5537086A>G	uc001maz.3	-	1	871	c.586T>C	c.(586-588)TCA>CCA	p.S196P	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	196										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		AGATGTTCTGAAATGAACTGC	0.483000													30	82					0	0	0.009535	0	0	
OR52L1	338751	broad.mit.edu	37	11	6007738	6007738	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:6007738A>G	uc001mcd.2	-	1	478	c.423T>C	c.(421-423)TAT>TAC	p.Y141Y		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	141	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAATGGCTACATAGCAATCCA	0.517000													4	41					0	0	0.009096	0	0	
LUZP2	338645	broad.mit.edu	37	11	24518846	24518846	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:24518846C>T	uc001mqs.2	+	1	291	c.57C>T	c.(55-57)AGC>AGT	p.S19S	LUZP2_uc009yif.2_5'UTR|LUZP2_uc009yig.2_Silent_p.S19S	NM_001009909	NP_001009909	Q86TE4	LUZP2_HUMAN	leucine zipper protein 2 precursor	19	Potential.					extracellular region				ovary(1)|skin(1)	2						TGGTCCTCAGCACCAGGTGAG	0.657000													7	12					0	0	0.001984	0	0	
CHST1	8534	broad.mit.edu	37	11	45671632	45671632	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:45671632T>G	uc001mys.1	-	4	1513	c.842A>C	c.(841-843)AAC>ACC	p.N281T		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	281	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGACACGGAGTTGGAGAAGTC	0.637000													7	86					0	0	0.003080	0	0	
OR4C11	219429	broad.mit.edu	37	11	55371655	55371655	+	Silent	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:55371655G>C	uc010rii.1	-	1	195	c.195C>G	c.(193-195)TCC>TCG	p.S65S		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATCTGCAAAGGACAAATAAA	0.408000													33	15					0	0	0.012213	0	0	
OR5D14	219436	broad.mit.edu	37	11	55563243	55563243	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:55563243T>G	uc010rim.1	+	1	212	c.212T>G	c.(211-213)GTT>GGT	p.V71G		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				CTCTCTTTTGTTGATTTTTGT	0.383000													29	56					0	0	0.005443	0	0	
OR8K3	219473	broad.mit.edu	37	11	56086292	56086292	+	Silent	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:56086292C>A	uc010rjf.1	+	1	510	c.510C>A	c.(508-510)GGC>GGA	p.G170G		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CCTTCTGTGGCTACAACGTCA	0.378000													6	75					2.7689e-08	3.06986e-08	0.001984	1	0	
OR8K3	219473	broad.mit.edu	37	11	56086642	56086642	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:56086642T>C	uc010rjf.1	+	1	860	c.860T>C	c.(859-861)TTG>TCG	p.L287S		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TTGAATCCCTTGATCTATAGT	0.353000													25	29					0	0	0.016522	0	0	
OR10Q1	219960	broad.mit.edu	37	11	57995417	57995417	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:57995417T>A	uc010rkd.1	-	1	931	c.931A>T	c.(931-933)ATC>TTC	p.I311F		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				GCTTTACGGATAATGGCACTC	0.498000													24	178					0	0	0.016522	0	0	
TCN1	6947	broad.mit.edu	37	11	59622291	59622291	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:59622291C>T	uc001noj.2	-	7	1053	c.955G>A	c.(955-957)GCT>ACT	p.A319T		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	319					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GGCTCATCAGCGGAGATGTTG	0.398000													5	71					0	0	0.014758	0	0	
SCGB1D2	10647	broad.mit.edu	37	11	62010904	62010904	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:62010904G>A	uc001ntb.2	+	2	255	c.199G>A	c.(199-201)GAT>AAT	p.D67N		NM_006551	NP_006542	O95969	SG1D2_HUMAN	lipophilin B precursor	67						extracellular space	binding				0						GAGATGCACGGATCAGATGTC	0.453000													31	63					0	0	0.010818	0	0	
CASP4	837	broad.mit.edu	37	11	104825729	104825729	+	Splice_Site	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:104825729C>T	uc001pid.1	-	2	81	c.8_splice	c.e2-1	p.E3_splice	CASP4_uc001pib.1_Splice_Site|CASP4_uc009yxg.1_Splice_Site|CASP4_uc010rux.1_Splice_Site_p.E3_splice|CASP4_uc010ruy.1_Splice_Site_p.E3_splice	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor						apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		TGGTTGCCTTCTGTTAGAAAT	0.368000													9	69					0	0	0.004482	0	0	
DIXDC1	85458	broad.mit.edu	37	11	111835363	111835363	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:111835363C>T	uc001pml.2	+	2	448	c.151C>T	c.(151-153)CGG>TGG	p.R51W	DIXDC1_uc001pmj.2_Missense_Mutation_p.R44W|DIXDC1_uc001pmk.2_Missense_Mutation_p.R51W	NM_001037954	NP_001033043	Q155Q3	DIXC1_HUMAN	DIX domain containing 1 isoform a	51	CH.				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytosol|focal adhesion	actin binding|gamma-tubulin binding|signal transducer activity			ovary(1)	1		all_cancers(61;7.58e-15)|all_epithelial(67;5.42e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;2.99e-07)|BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|all cancers(92;6.25e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0548)		ACAAGATCTCCGGGATGGGGT	0.517000													6	5					0	0	0.001168	0	0	
ANKK1	255239	broad.mit.edu	37	11	113270344	113270344	+	Silent	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:113270344G>C	uc001pny.2	+	8	1747	c.1653G>C	c.(1651-1653)GCG>GCC	p.A551A		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	551	ANK 6.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		AGAGTGGAGCGGTCCCTGATG	0.592000													5	6					0	0	0.014758	0	0	
ANKK1	255239	broad.mit.edu	37	11	113270418	113270418	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:113270418G>T	uc001pny.2	+	8	1821	c.1727G>T	c.(1726-1728)TGC>TTC	p.C576F		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	576	ANK 7.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		TACCTGATCTGCAAGATGCTG	0.612000													4	10					0.000602214	0.000631953	0.014758	1	0	
MFRP	83552	broad.mit.edu	37	11	119216153	119216153	+	Silent	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:119216153A>T	uc001pwj.2	-	5	778	c.618T>A	c.(616-618)CCT>CCA	p.P206P	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Silent_p.P206P	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		CTTCAGGCTCAGGGGAGAGTT	0.507000													11	27					0	0	0.010729	0	0	
OR6M1	390261	broad.mit.edu	37	11	123676313	123676313	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:123676313G>T	uc010rzz.1	-	1	745	c.745C>A	c.(745-747)CAC>AAC	p.H249N		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		TTGCTCCCGTGGGCAATGGAG	0.512000													10	68					0.000442599	0.000466375	0.006214	1	0	
ST3GAL4	6484	broad.mit.edu	37	11	126277484	126277484	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:126277484G>A	uc001qds.2	+	6	515	c.296G>A	c.(295-297)CGG>CAG	p.R99Q	ST3GAL4_uc001qdt.2_Missense_Mutation_p.R95Q|ST3GAL4_uc009zcc.2_Intron|ST3GAL4_uc009zcd.2_Missense_Mutation_p.R88Q|ST3GAL4_uc001qdu.2_Missense_Mutation_p.R95Q|ST3GAL4_uc001qdv.2_Missense_Mutation_p.R99Q|ST3GAL4_uc009zce.2_Missense_Mutation_p.R95Q|ST3GAL4_uc001qdw.2_Missense_Mutation_p.R88Q|ST3GAL4_uc001qdx.1_Missense_Mutation_p.R88Q|ST3GAL4_uc001qdy.2_5'UTR|ST3GAL4_uc001qdz.2_5'UTR	NM_006278	NP_006269	Q11206	SIA4C_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	99	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.138)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0767)		CTGCTCCTCCGGGTGCTAGCC	0.587000													39	94					0	0	0.006230	0	0	
ARHGAP32	9743	broad.mit.edu	37	11	128840133	128840133	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:128840133G>A	uc009zcp.2	-	22	4933	c.4933C>T	c.(4933-4935)CGG>TGG	p.R1645W	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.R604W|ARHGAP32_uc001qez.2_Missense_Mutation_p.R1296W	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1645	Interaction with GAB2.				cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						TAGTGGACCCGGCCATTCTCA	0.498000													5	60					0	0	0.001168	0	0	
NTM	50863	broad.mit.edu	37	11	132177584	132177584	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr11:132177584G>A	uc001qgp.2	+	4	1192	c.528G>A	c.(526-528)GCG>GCA	p.A176A	NTM_uc001qgm.2_Silent_p.A176A|NTM_uc010sch.1_Silent_p.A167A|NTM_uc010sci.1_Silent_p.A176A|NTM_uc010scj.1_Silent_p.A135A|NTM_uc001qgo.2_Silent_p.A176A|NTM_uc001qgq.2_Silent_p.A176A|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	176	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						TTCCCGCAGCGGTTGGCTTTG	0.468000													20	21					0	0	0.007413	0	0	
CD163L1	283316	broad.mit.edu	37	12	7531675	7531675	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:7531675G>T	uc001qsy.2	-	9	2296	c.2270C>A	c.(2269-2271)TCT>TAT	p.S757Y	CD163L1_uc010sge.1_Missense_Mutation_p.S767Y	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	757	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGTGCAGCCAGAATTCGACAT	0.458000													42	50					1.47244e-24	1.80516e-24	0.006230	1	0	
KCNJ8	3764	broad.mit.edu	37	12	21919302	21919302	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:21919302G>T	uc001rff.2	-	3	968	c.630C>A	c.(628-630)TTC>TTA	p.F210L		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	210	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	CACCCACTCGGAACATGAAGC	0.493000													40	63					1.96642e-18	2.38779e-18	0.006999	1	0	
Unknown	0	broad.mit.edu	37	12	24736551	24736551	+	RNA	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:24736551A>T	uc001rgb.1	-	1		c.552T>A								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		AGCTTAAAAAACTTAAGAAGG	0.547000													32	61					0	0	0.010818	0	0	
ITPR2	3709	broad.mit.edu	37	12	26868257	26868257	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:26868257C>A	uc001rhg.2	-	8	1247	c.830G>T	c.(829-831)AGT>ATT	p.S277I		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	277	Cytoplasmic (Potential).|MIR 3.				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TGCTTTAGAACTAGTAGCAGA	0.358000													10	86					0.000442599	0.000466375	0.006214	1	0	
CAPRIN2	65981	broad.mit.edu	37	12	30867934	30867934	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:30867934C>G	uc001rji.1	-	15	3360	c.2609G>C	c.(2608-2610)AGA>ACA	p.R870T	CAPRIN2_uc001rjf.1_Missense_Mutation_p.R666T|CAPRIN2_uc001rjg.1_Missense_Mutation_p.R537T|CAPRIN2_uc001rjh.1_Missense_Mutation_p.R820T|CAPRIN2_uc001rjj.1_Missense_Mutation_p.R536T|CAPRIN2_uc001rjk.3_Missense_Mutation_p.R869T|CAPRIN2_uc001rjl.3_Missense_Mutation_p.R814T|CAPRIN2_uc001rjm.1_3'UTR	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	870					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GGTTATTAATCTCCCACCACG	0.423000													31	79					0	0	0.009535	0	0	
GPD1	2819	broad.mit.edu	37	12	50498370	50498370	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:50498370G>A	uc001rvz.2	+	2	88	c.55G>A	c.(55-57)GCC>ACC	p.A19T	GPD1_uc010smp.1_Missense_Mutation_p.A19T|GPD1_uc001rwa.2_Missense_Mutation_p.A19T	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	19					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	CTCAGCCATCGCCAAGATCGT	0.592000													8	69					0	0	0.003080	0	0	
TRHDE	29953	broad.mit.edu	37	12	72866849	72866849	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:72866849G>T	uc001sxa.2	+	5	1368	c.1338G>T	c.(1336-1338)TGG>TGT	p.W446C		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	446	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TACTGCAGTGGTTTGGTGACC	0.363000													8	113					0.00448238	0.0046089	0.004482	1	0	
TBX3	6926	broad.mit.edu	37	12	115112484	115112484	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr12:115112484G>A	uc001tvt.1	-	7	2220	c.1256C>T	c.(1255-1257)GCT>GTT	p.A419V	TBX3_uc001tvu.1_Missense_Mutation_p.A399V	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	419					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		GGGCCGCTCAGCAGCGAAAAG	0.721000													3	14					0	0	0.004672	0	0	
DKFZp686A1627	266695	broad.mit.edu	37	13	19624148	19624148	+	RNA	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr13:19624148T>A	uc001umb.1	-	9		c.3335A>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						AATTGTAGCATTTGTGAACCT	0.557000													8	44					0	0	0.003080	0	0	
MAB21L1	4081	broad.mit.edu	37	13	36049843	36049843	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr13:36049843A>T	uc001uvc.2	-	1	990	c.433T>A	c.(433-435)TAC>AAC	p.Y145N	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	145					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		ACATCCCGGTAGCTACATTTG	0.557000													24	35					0	0	0.016522	0	0	
NKX2-1	7080	broad.mit.edu	37	14	36987124	36987124	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr14:36987124C>T	uc001wtt.2	-	2	816	c.475G>A	c.(475-477)GCG>ACG	p.A159T	SFTA3_uc001wts.2_Intron|NKX2-1_uc001wtu.2_Missense_Mutation_p.A189T|NKX2-1_uc001wtv.2_Missense_Mutation_p.A159T|uc001wtw.1_5'Flank	NM_003317	NP_003308	P43699	NKX21_HUMAN	thyroid transcription factor 1 isoform 2	159					epithelial tube branching involved in lung morphogenesis|globus pallidus development|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|thyroid gland development		protein binding|transcription regulatory region DNA binding			skin(1)	1	all_cancers(3;4.47e-51)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)|Breast(36;0.165)		Lung(8;1.8e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.014)|all cancers(34;0.0366)|LUSC - Lung squamous cell carcinoma(13;0.132)	GBM - Glioblastoma multiforme(112;0.0171)		CTGCGCGGCGCGCTTGGCAGC	0.692000			A		NSCLC								5	10					0	0	0.014758	0	0	
NRXN3	9369	broad.mit.edu	37	14	80164096	80164096	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr14:80164096C>T	uc001xun.2	+	15	3112	c.2621C>T	c.(2620-2622)GCG>GTG	p.A874V	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Missense_Mutation_p.A242V|NRXN3_uc010asw.2_Missense_Mutation_p.A272V|NRXN3_uc001xur.3_Missense_Mutation_p.A242V	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1247	Extracellular (Potential).|Laminin G-like 6.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTGAACATGGCGGCTGAGAAC	0.478000													7	40					0	0	0.001984	0	0	
SERPINA10	51156	broad.mit.edu	37	14	94754794	94754794	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr14:94754794T>G	uc001yct.2	-	3	1287	c.821A>C	c.(820-822)AAG>ACG	p.K274T	SERPINA10_uc001ycu.3_Missense_Mutation_p.K274T	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	274					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GGAGGCAAACTTGCCTGCACC	0.488000													20	44					0	0	0.010504	0	0	
MKRN3	7681	broad.mit.edu	37	15	23811299	23811299	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:23811299C>T	uc001ywh.3	+	1	846	c.370C>T	c.(370-372)CGG>TGG	p.R124W	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.R124W	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	124						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		CCTTTCTGGTCGGAAGATGGC	0.597000													24	45					0	0	0.016522	0	0	
HAUS2	55142	broad.mit.edu	37	15	42855984	42855984	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:42855984A>G	uc001zqe.2	+	5	487	c.427A>G	c.(427-429)ATT>GTT	p.I143V	HAUS2_uc010udi.1_Missense_Mutation_p.I112V|HAUS2_uc001zqf.2_Missense_Mutation_p.I49V	NM_018097	NP_060567	Q9NVX0	HAUS2_HUMAN	centrosomal protein 27kDa isoform 1	143					cell division|centrosome organization|G2/M transition of mitotic cell cycle|mitosis|spindle assembly	centrosome|cytosol|HAUS complex|microtubule|spindle					0						TGTGACTTTCATTGAGAGATT	0.303000													12	117					0	0	0.013537	0	0	
CDAN1	146059	broad.mit.edu	37	15	43018353	43018353	+	Silent	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:43018353C>A	uc001zql.2	-	25	3327	c.3210G>T	c.(3208-3210)CTG>CTT	p.L1070L	CDAN1_uc001zqj.2_RNA|CDAN1_uc001zqk.2_Silent_p.L396L	NM_138477	NP_612486	Q8IWY9	CDAN1_HUMAN	codanin 1	1070						integral to membrane	protein binding			ovary(2)	2		all_cancers(109;5.4e-16)|all_epithelial(112;2.97e-14)|Lung NSC(122;1.75e-08)|all_lung(180;5.99e-08)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;2.49e-07)		CAGGTGGGCACAGGAACTGCG	0.562000													7	53					2.0095e-06	2.18984e-06	0.001984	1	0	
SERF2	10169	broad.mit.edu	37	15	44085229	44085229	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:44085229G>C	uc001zsz.3	+	2	162	c.64G>C	c.(64-66)GTT>CTT	p.V22L	ELL3_uc001zsx.1_Intron|SERF2_uc010bdq.2_Missense_Mutation_p.V22L|SERF2_uc010uee.1_5'UTR|C15orf63_uc001ztb.2_5'UTR	NM_001018108	NP_001018118	P84101	SERF2_HUMAN	small EDRK-rich factor 2	22						cytosol|nucleus					0		all_cancers(109;7.57e-15)|all_epithelial(112;3.51e-12)|Lung NSC(122;4.72e-08)|all_lung(180;4.9e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;7.81e-07)		GAGCGACTCGGTTAAGGGAAA	0.597000													5	15					0	0	0.001168	0	0	
TNFAIP8L3	388121	broad.mit.edu	37	15	51350609	51350609	+	Silent	SNP	C	T	T	rs140282835		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:51350609C>T	uc001zyy.2	-	3	448	c.348G>A	c.(346-348)GCG>GCA	p.A116A		NM_207381	NP_997264	Q5GJ75	TP8L3_HUMAN	tumor necrosis factor, alpha-induced protein	116											0				all cancers(107;0.000389)|GBM - Glioblastoma multiforme(94;0.00338)		GGGCTTGAAGCGCAAGACTCT	0.353000													31	30					0	0	0.007291	0	0	
DMXL2	23312	broad.mit.edu	37	15	51773769	51773769	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:51773769C>T	uc002abf.2	-	24	5759	c.5534G>A	c.(5533-5535)CGA>CAA	p.R1845Q	DMXL2_uc002abd.2_5'UTR|DMXL2_uc010ufy.1_Missense_Mutation_p.R1845Q|DMXL2_uc010bfa.2_Missense_Mutation_p.R1209Q	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1845						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AGGATGAGTTCGAAGGTAGTT	0.348000													15	57					0	0	0.002450	0	0	
UNC13C	440279	broad.mit.edu	37	15	54307481	54307481	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr15:54307481T>C	uc002ack.2	+	1	2381	c.2381T>C	c.(2380-2382)TTC>TCC	p.F794S		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	794					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ACTTTCAGCTTCCCAAAATTT	0.443000													7	14					0	0	0.001984	0	0	
MSLNL	401827	broad.mit.edu	37	16	824881	824881	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:824881C>T	uc002cjz.1	-	7	1691	c.1691G>A	c.(1690-1692)CGC>CAC	p.R564H		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	213	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						AAGGGCAATGCGCTGGGCAGC	0.706000													13	24					0	0	0.001855	0	0	
CACNA1H	8912	broad.mit.edu	37	16	1270395	1270395	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:1270395C>T	uc002cks.2	+	35	6711	c.6463C>T	c.(6463-6465)CGG>TGG	p.R2155W	CACNA1H_uc002ckt.2_Missense_Mutation_p.R2149W|CACNA1H_uc002cku.2_Missense_Mutation_p.R850W|CACNA1H_uc010brj.2_Missense_Mutation_p.R866W|CACNA1H_uc002ckv.2_Missense_Mutation_p.R844W	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2155	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CGAGCAGTGGCGGCCCTCGGC	0.726000													13	28					0	0	0.013537	0	0	
EARS2	124454	broad.mit.edu	37	16	23546255	23546255	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:23546255G>A	uc002dlt.3	-	4	944	c.912C>T	c.(910-912)CCC>CCT	p.P304P	EARS2_uc002dlr.3_RNA|EARS2_uc002dls.3_RNA|EARS2_uc002dlu.2_Silent_p.P304P	NM_001083614	NP_001077083	Q5JPH6	SYEM_HUMAN	glutamyl-tRNA synthetase 2 precursor	304					glutamyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|glutamate-tRNA ligase activity|RNA binding				0				GBM - Glioblastoma multiforme(48;0.0353)	L-Glutamic Acid(DB00142)	ACAAGGAATCGGGCAGGAAGC	0.483000													13	27					0	0	0.013537	0	0	
CACNG3	10368	broad.mit.edu	37	16	24372925	24372925	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:24372925G>A	uc002dmf.2	+	4	1889	c.689G>A	c.(688-690)CGA>CAA	p.R230Q		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	230					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TACAGGTATCGATTCCGGAGG	0.537000													37	112					0	0	0.015359	0	0	
TMEM219	124446	broad.mit.edu	37	16	29982737	29982737	+	Silent	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:29982737G>T	uc002duw.2	+	5	761	c.594G>T	c.(592-594)CTG>CTT	p.L198L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TMEM219_uc002duy.2_Silent_p.L198L|TMEM219_uc010bzk.1_Silent_p.L198L|TMEM219_uc002duz.2_Silent_p.L198L|TMEM219_uc010bzl.1_RNA|TAOK2_uc002dva.1_5'Flank|TAOK2_uc002dvb.1_5'Flank|TAOK2_uc002dvc.1_5'Flank	NM_194280	NP_919256	Q86XT9	TM219_HUMAN	transmembrane protein 219	198						integral to membrane					0						AGGAGGAGCTGGCTCTGTGTG	0.602000													21	124					2.37509e-13	2.76552e-13	0.010504	1	0	
SALL1	6299	broad.mit.edu	37	16	51174933	51174933	+	Silent	SNP	C	T	T	rs79302764		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:51174933C>T	uc010vgs.1	-	2	1231	c.1200G>A	c.(1198-1200)TCG>TCA	p.S400S	SALL1_uc010vgr.1_Silent_p.S303S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	400					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGGGGAAAACCGAGTTAGCGG	0.493000													49	30					0	0	0.014410	0	0	
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													3	9					0	0	0.004672	0	0	
Unknown	0	broad.mit.edu	37	16	88620338	88620338	+	Missense_Mutation	SNP	G	A	A	rs11270667		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:88620338G>A	uc010vox.1	-	2	292	c.292C>T	c.(292-294)CGC>TGC	p.R98C						RecName: Full=Putative uncharacterized protein C16orf85;																		CAGCCAGGGCGGGACGCACGC	0.652000													26	16					0	0	0.003330	0	0	
CDH15	1013	broad.mit.edu	37	16	89254540	89254540	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr16:89254540A>G	uc002fmt.2	+	7	902	c.825A>G	c.(823-825)GGA>GGG	p.G275G		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	275	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CCGTCAGCGGAGTGGATGTGG	0.662000													7	4					0	0	0.001984	0	0	
XAF1	54739	broad.mit.edu	37	17	6674284	6674284	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:6674284C>T	uc002gdn.2	+	6	1072	c.830C>T	c.(829-831)CCG>CTG	p.P277L	XAF1_uc002gdm.1_Missense_Mutation_p.P217L|XAF1_uc002gdo.2_Missense_Mutation_p.P258L|XAF1_uc002gdp.2_Missense_Mutation_p.P226L|XAF1_uc002gdq.2_Missense_Mutation_p.P109L|XAF1_uc002gdr.2_Missense_Mutation_p.P207L	NM_017523	NP_059993	Q6GPH4	XAF1_HUMAN	XIAP associated factor 1 isoform 1	277					apoptosis|type I interferon-mediated signaling pathway	mitochondrion|nucleus	zinc ion binding				0						CTTCCCCTGCCGATCCTAAAT	0.493000													7	41					0	0	0.001984	0	0	
TP53	7157	broad.mit.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:7577082C>T	uc002gim.2	-	8	1050	c.856G>A	c.(856-858)GAA>AAA	p.E286K	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.E286K|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.E154K|TP53_uc010cng.1_Missense_Mutation_p.E154K|TP53_uc002gii.1_Missense_Mutation_p.E154K|TP53_uc010cnh.1_Missense_Mutation_p.E286K|TP53_uc010cni.1_Missense_Mutation_p.E286K|TP53_uc002gij.2_Missense_Mutation_p.E286K	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	286	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		E -> V (in sporadic cancers; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).|E -> D (in sporadic cancers; somatic mutation).|E -> L (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|E -> G (in sporadic cancers; somatic mutation).|E -> Q (in sporadic cancers; somatic mutation).|E -> A (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E286K(52)|p.E286*(14)|p.E286G(14)|p.0?(7)|p.E286V(6)|p.E286Q(5)|p.?(2)|p.E286D(2)|p.E286E(2)|p.R283fs*16(2)|p.E286fs*59(2)|p.E286fs*17(2)|p.E285_N288delEEEN(1)|p.R282_E287delRRTEEE(1)|p.T284_G293del10(1)|p.G279fs*59(1)|p.E285fs*13(1)|p.L265_K305del41(1)|p.T284fs*57(1)|p.R283fs*56(1)|p.E286A(1)|p.V272_K292del21(1)|p.R283fs*59(1)|p.E285_L289delEEENL(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGATTCTCTTCCTCTGTGCGC	0.557000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			14	12					0	0	0.002450	0	0	
SLFN11	91607	broad.mit.edu	37	17	33690124	33690124	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:33690124C>T	uc010ctp.2	-	4	1145	c.703G>A	c.(703-705)GTC>ATC	p.V235I	SLFN11_uc010ctq.2_Missense_Mutation_p.V235I|SLFN11_uc002hjh.3_Missense_Mutation_p.V235I|SLFN11_uc002hjg.3_Missense_Mutation_p.V235I|SLFN11_uc010ctr.2_Missense_Mutation_p.V235I	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	235						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AATGCAGGGACGTATTCTGGA	0.403000													44	88					0	0	0.007835	0	0	
FZD2	2535	broad.mit.edu	37	17	42636253	42636253	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:42636253C>T	uc002igx.1	+	1	1329	c.1197C>T	c.(1195-1197)AGC>AGT	p.S399S		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	399	Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		ACCTGCTGAGCGGCGTGTGCT	0.657000													37	61					0	0	0.004289	0	0	
SP6	80320	broad.mit.edu	37	17	45924989	45924989	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:45924989C>T	uc002img.1	-	2	1139	c.807G>A	c.(805-807)TCG>TCA	p.S269S	SP6_uc002imh.1_Silent_p.S269S	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor	269	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CCTTCAGGTGCGACGTCTTGG	0.662000													7	43					0	0	0.001984	0	0	
MTMR4	9110	broad.mit.edu	37	17	56589814	56589814	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:56589814G>A	uc002iwj.2	-	4	257	c.147C>T	c.(145-147)GCC>GCT	p.A49A	MTMR4_uc010dcx.1_Silent_p.A63A	NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	49						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGAGGGCATCGGCTGCCCGGC	0.527000													21	42					0	0	0.012319	0	0	
TEX14	56155	broad.mit.edu	37	17	56700326	56700326	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:56700326C>T	uc010dcz.1	-	4	417	c.299G>A	c.(298-300)GGC>GAC	p.G100D	TEX14_uc002iwr.1_Missense_Mutation_p.G100D|TEX14_uc002iws.1_Missense_Mutation_p.G100D|TEX14_uc010dda.1_5'UTR	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	100	ANK 3.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCACTGATTGCCCGAAAATGC	0.547000													7	34					0	0	0.001984	0	0	
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458000													13	64					2.32078e-09	2.60705e-09	0.003163	1	0	
C19orf21	126353	broad.mit.edu	37	19	758149	758149	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:758149G>A	uc002lpo.2	+	2	1286	c.1203G>A	c.(1201-1203)CCG>CCA	p.P401P		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	401										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTCAGCCCGGCCCCAGATG	0.701000													11	9					0	0	0.010729	0	0	
REXO1	57455	broad.mit.edu	37	19	1820356	1820356	+	Silent	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:1820356G>T	uc002lua.3	-	6	2528	c.2433C>A	c.(2431-2433)GGC>GGA	p.G811G	REXO1_uc010dsq.2_Silent_p.G120G|REXO1_uc010xgs.1_5'UTR|REXO1_uc010dsp.1_5'Flank|uc002lub.1_5'Flank	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	811						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGGACTTTGCCCCCAAACT	0.552000													29	60					5.45727e-16	6.44261e-16	0.008361	1	0	
ZNF57	126295	broad.mit.edu	37	19	2918038	2918038	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:2918038G>C	uc002lwr.2	+	4	1567	c.1419G>C	c.(1417-1419)GAG>GAC	p.E473D	ZNF57_uc010xha.1_Missense_Mutation_p.E441D	NM_173480	NP_775751	Q68EA5	ZNF57_HUMAN	zinc finger protein 57	473					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.00161)|STAD - Stomach adenocarcinoma(1328;0.18)		ACACTGGAGAGAAGCCTTATG	0.443000													9	58					0	0	0.004482	0	0	
INSR	3643	broad.mit.edu	37	19	7132175	7132175	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:7132175C>T	uc002mgd.1	-	14	2945	c.2836G>A	c.(2836-2838)GAC>AAC	p.D946N	INSR_uc002mge.1_Missense_Mutation_p.D934N	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	946	Fibronectin type-III 3.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTACAATAGTCTGTCACGTAG	0.602000													10	42					0	0	0.010729	0	0	
MUC16	94025	broad.mit.edu	37	19	9071717	9071717	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:9071717C>T	uc002mkp.2	-	3	15933	c.15729G>A	c.(15727-15729)GTG>GTA	p.V5243V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5245	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCAGGTGGCACTGTGGACT	0.488000													22	85					0	0	0.014323	0	0	
ZNF443	10224	broad.mit.edu	37	19	12542658	12542658	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:12542658C>T	uc002mtu.2	-	4	526	c.328G>A	c.(328-330)GAA>AAA	p.E110K		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	110					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						ATGACTTTTTCTCCTCTCATA	0.433000													12	54					0	0	0.001855	0	0	
NDUFB7	4713	broad.mit.edu	37	19	14677059	14677059	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:14677059C>T	uc002mzg.2	-	3	374	c.300G>A	c.(298-300)AAG>AAA	p.K100K		NM_004146	NP_004137	P17568	NDUB7_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	100					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			ovary(1)	1					NADH(DB00157)	GCTCAAACTCCTTCATGCGCA	0.672000													6	46					0	0	0.001168	0	0	
Unknown	0	broad.mit.edu	37	19	15890625	15890626	+	RNA	DNP	CG	GA	GA	rs11673423	by1000genomes	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:15890625_15890626CG>GA	uc002nbo.2	-	1		c.172_173CG>TC								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GCCAGGAAGCCGGCCAGGAGCC	0.639000													3	20					0	0	0.004672	0	0	
ZNF675	171392	broad.mit.edu	37	19	23836362	23836362	+	Missense_Mutation	SNP	C	T	T	rs150723446		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:23836362C>T	uc002nri.2	-	4	1555	c.1373G>A	c.(1372-1374)GGC>GAC	p.G458D		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	458	C2H2-type 12.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AAAAGCTTTGCCACATTCTTC	0.353000													18	25					0	0	0.004990	0	0	
WTIP	126374	broad.mit.edu	37	19	34991055	34991055	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:34991055G>A	uc002nvm.2	+	8	1174	c.1174G>A	c.(1174-1176)GGG>AGG	p.G392R		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			GCAGCTGAGCGGGGAGGAGGG	0.672000													3	17					0	0	0.004672	0	0	
ZNF599	148103	broad.mit.edu	37	19	35250996	35250996	+	Missense_Mutation	SNP	C	T	T	rs149040820	byFrequency	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:35250996C>T	uc010edn.1	-	4	1098	c.710G>A	c.(709-711)CGT>CAT	p.R237H	ZNF599_uc010edm.1_Missense_Mutation_p.R200H	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	237	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			AGCCATATAACGACAGGCTTT	0.473000													50	87					0	0	0.014410	0	0	
ARHGAP33	115703	broad.mit.edu	37	19	36276129	36276129	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:36276129G>C	uc002obr.1	+	18	1845	c.1760G>C	c.(1759-1761)GGG>GCG	p.G587A	ARHGAP33_uc002obs.1_Missense_Mutation_p.G587A|ARHGAP33_uc002obt.1_Missense_Mutation_p.G451A|ARHGAP33_uc010eel.2_Missense_Mutation_p.G175A|ARHGAP33_uc002obv.1_Missense_Mutation_p.G175A	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	587					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CGGAAGCCAGGGGGCAGCAGC	0.687000													6	29					0	0	0.001168	0	0	
ZNF570	148268	broad.mit.edu	37	19	37975729	37975729	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:37975729C>A	uc002ogk.1	+	5	1734	c.1205C>A	c.(1204-1206)GCT>GAT	p.A402D	ZNF570_uc010efl.1_Missense_Mutation_p.A458D|ZNF570_uc010xtr.1_Missense_Mutation_p.A199D	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	402	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCACACCTTGCTCAACATCAG	0.423000													30	37					8.58068e-18	1.03211e-17	0.007291	1	0	
GRLF1	2909	broad.mit.edu	37	19	47422058	47422058	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:47422058C>T	uc010ekv.2	+	1	126	c.126C>T	c.(124-126)TTC>TTT	p.F42F		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	42					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GCAACCGCTTCGTGCGCCCGA	0.522000													9	101					0	0	0.004482	0	0	
PNKP	11284	broad.mit.edu	37	19	50370408	50370408	+	Silent	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:50370408T>C	uc002pqh.2	-	1	106	c.54A>G	c.(52-54)GGA>GGG	p.G18G	PNKP_uc002pqg.2_5'Flank|PNKP_uc002pqi.2_5'UTR|PNKP_uc002pqj.2_Silent_p.G18G|PNKP_uc010enm.2_Silent_p.G18G|PNKP_uc002pqk.2_Silent_p.G18G	NM_007254	NP_009185	Q96T60	PNKP_HUMAN	polynucleotide kinase 3' phosphatase	18				G -> E (in Ref. 1; AAD51135).	DNA damage response, detection of DNA damage|DNA-dependent DNA replication|nucleotide-excision repair, DNA damage removal|response to oxidative stress|response to radiation	nucleolus	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|damaged DNA binding|double-stranded DNA binding|endonuclease activity|nucleotide kinase activity|polynucleotide 3'-phosphatase activity|protein binding			ovary(1)|kidney(1)	2		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0118)|OV - Ovarian serous cystadenocarcinoma(262;0.0134)		TGGGGGGCGCTCCCCCAGGGG	0.711000								Other_BER_factors					12	32					0	0	0.001855	0	0	
PEG3	5178	broad.mit.edu	37	19	57326846	57326846	+	Missense_Mutation	SNP	C	A	A	rs145274958	byFrequency	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:57326846C>A	uc002qnu.2	-	7	3315	c.2964G>T	c.(2962-2964)CAG>CAT	p.Q988H	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.Q959H|PEG3_uc002qnv.2_Missense_Mutation_p.Q988H|PEG3_uc002qnw.2_Missense_Mutation_p.Q864H|PEG3_uc002qnx.2_Missense_Mutation_p.Q862H|PEG3_uc010etr.2_Missense_Mutation_p.Q988H	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	988	C2H2-type 5.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CATGAATCTTCTGGTGCTCAG	0.502000													24	90					9.57634e-11	1.09016e-10	0.003330	1	0	
ZNF749	388567	broad.mit.edu	37	19	57955724	57955724	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr19:57955724T>A	uc002qoq.2	+	3	1462	c.1208T>A	c.(1207-1209)GTT>GAT	p.V403D	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	403	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		CACCAGAGAGTTCATGCTGGC	0.423000													9	119					0	0	0.006214	0	0	
COLEC11	78989	broad.mit.edu	37	2	3691470	3691470	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:3691470T>A	uc002qya.2	+	7	726	c.578T>A	c.(577-579)CTG>CAG	p.L193Q	COLEC11_uc002qxz.2_Missense_Mutation_p.L190Q|COLEC11_uc002qyb.2_Missense_Mutation_p.L169Q|COLEC11_uc002qyc.2_Missense_Mutation_p.L169Q|COLEC11_uc010ewo.2_Missense_Mutation_p.L145Q|COLEC11_uc010ewp.2_Missense_Mutation_p.L167Q|COLEC11_uc010ewq.2_Missense_Mutation_p.L143Q|COLEC11_uc010ewr.2_Missense_Mutation_p.L143Q|COLEC11_uc010ews.2_Missense_Mutation_p.L119Q	NM_024027	NP_076932	Q9BWP8	COL11_HUMAN	collectin sub-family member 11 isoform a	193	C-type lectin.					collagen	mannose binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		GCCGCATACCTGGCGCAAGCC	0.667000													6	75					0	0	0.001168	0	0	
CCDC85A	114800	broad.mit.edu	37	2	56419955	56419955	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:56419955T>A	uc002rzn.2	+	2	1122	c.620T>A	c.(619-621)GTG>GAG	p.V207E		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	207										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			GTGCGGGATGTGGGTGACGGC	0.682000													10	78					0	0	0.008291	0	0	
SLC35F5	80255	broad.mit.edu	37	2	114500332	114500332	+	Silent	SNP	C	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:114500332C>G	uc002tku.1	-	7	1111	c.687G>C	c.(685-687)CTG>CTC	p.L229L	SLC35F5_uc002tkt.2_RNA|SLC35F5_uc002tkv.2_Silent_p.L223L|SLC35F5_uc002tkw.2_Silent_p.L229L	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	229					transport	integral to membrane					0						CCACAGTTTTCAGTATGGATT	0.373000													10	131					0	0	0.008291	0	0	
ACTR3	10096	broad.mit.edu	37	2	114699799	114699799	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:114699799G>T	uc002tkx.1	+	8	1041	c.721G>T	c.(721-723)GAA>TAA	p.E241*	ACTR3_uc010yyc.1_Nonsense_Mutation_p.E179*|ACTR3_uc010yyd.1_Nonsense_Mutation_p.E190*	NM_005721	NP_005712	P61158	ARP3_HUMAN	ARP3 actin-related protein 3 homolog	241					cellular component movement|cilium morphogenesis	Arp2/3 protein complex	actin binding|ATP binding			skin(1)	1						TTTAGTAAAAGAATTTAACAA	0.318000													24	48					2.39556e-15	2.80215e-15	0.016522	1	0	
ERCC3	2071	broad.mit.edu	37	2	128044384	128044384	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:128044384G>T	uc002toh.1	-	8	1332	c.1237C>A	c.(1237-1239)CTG>ATG	p.L413M	ERCC3_uc002toe.1_Missense_Mutation_p.L168M|ERCC3_uc002tof.1_Missense_Mutation_p.L349M|ERCC3_uc002tog.1_Missense_Mutation_p.L349M|ERCC3_uc010flx.1_Missense_Mutation_p.L168M	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	413	Helicase ATP-binding.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		GTGTGGCCCAGCATGGAGTAG	0.592000			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				35	69					2.42023e-17	2.88392e-17	0.015359	1	0	
LOC401010	401010	broad.mit.edu	37	2	132200984	132200984	+	Missense_Mutation	SNP	G	A	A	rs113036104	by1000genomes	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:132200984G>A	uc002tst.2	-	1	1484	c.1018C>T	c.(1018-1020)CGC>TGC	p.R340C		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GAGCTCATGCGCCCCGGCTTC	0.612000													3	14					0	0	0.010729	0	0	
LOC401010	401010	broad.mit.edu	37	2	132200995	132200995	+	Missense_Mutation	SNP	C	T	T	rs113518588	by1000genomes	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:132200995C>T	uc002tst.2	-	1	1473	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						CCCCGGCTTCCTGCTGAAGTC	0.617000													5	14					0	0	0.013537	0	0	
TBR1	10716	broad.mit.edu	37	2	162274729	162274729	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:162274729C>A	uc002ubw.1	+	3	1167	c.865C>A	c.(865-867)CAT>AAT	p.H289N	TBR1_uc010foy.2_Missense_Mutation_p.H2N	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	289	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GGTCTATATGCATCCGGATTC	0.428000													5	46					1.23904e-05	1.33879e-05	0.014758	1	0	
XIRP2	129446	broad.mit.edu	37	2	168104063	168104063	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:168104063A>C	uc002udx.2	+	8	6179	c.6161A>C	c.(6160-6162)AAT>ACT	p.N2054T	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.N1879T|XIRP2_uc010fpq.2_Missense_Mutation_p.N1832T|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1879					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CATAAATCTAATGTTTTGGAA	0.393000													12	30					0	0	0.010729	0	0	
KBTBD10	10324	broad.mit.edu	37	2	170366712	170366712	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:170366712G>A	uc002ueu.1	+	1	501	c.424G>A	c.(424-426)GGA>AGA	p.G142R	KBTBD10_uc010zdh.1_Intron	NM_006063	NP_006054	O60662	KBTBA_HUMAN	kelch repeat and BTB (POZ) domain containing 10	142					striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						CCTAAGATTAGGACTTCTTCT	0.458000													12	189					0	0	0.010729	0	0	
SF3B1	23451	broad.mit.edu	37	2	198263275	198263275	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:198263275T>C	uc002uue.2	-	21	3092	c.3044A>G	c.(3043-3045)GAT>GGT	p.D1015G		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	1015	HEAT 8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			AGGCAGCAGATCTTTAATTGG	0.353000													7	97					0	0	0.003080	0	0	
TMEM169	92691	broad.mit.edu	37	2	216964986	216964986	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:216964986G>A	uc010zjr.1	+	4	941	c.615G>A	c.(613-615)TCG>TCA	p.S205S	TMEM169_uc010zjs.1_Silent_p.S205S|TMEM169_uc002vfw.2_Silent_p.S205S|TMEM169_uc002vfv.3_Silent_p.S205S	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	205	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACAAGATCTCGTATTGCCCTT	0.507000													52	107					0	0	0.014410	0	0	
COL4A4	1286	broad.mit.edu	37	2	227886829	227886829	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:227886829G>A	uc010zlt.1	-	43	4805	c.4151C>T	c.(4150-4152)GCG>GTG	p.A1384V		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1384	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CATGCCTGGCGCCCCAGGAAG	0.567000													10	160					0	0	0.006214	0	0	
COL6A3	1293	broad.mit.edu	37	2	238287440	238287440	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr2:238287440C>A	uc002vwl.2	-	6	2621	c.2336G>T	c.(2335-2337)AGC>ATC	p.S779I	COL6A3_uc002vwo.2_Missense_Mutation_p.S573I|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.S573I|COL6A3_uc002vwr.2_Missense_Mutation_p.S372I|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	779	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ATTCGCCTGGCTAGCTCCCAC	0.547000													6	45					3.59834e-05	3.87163e-05	0.001168	1	0	
SIRPB1	10326	broad.mit.edu	37	20	1558984	1558984	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr20:1558984C>T	uc010gai.2	-	2	532	c.433G>A	c.(433-435)GCC>ACC	p.A145T	SIRPB1_uc002wfk.3_Missense_Mutation_p.E145K	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	145	Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CTGTACTCACCGCGCACAGAC	0.552000													24	134					0	0	0.014323	0	0	
PTPRT	11122	broad.mit.edu	37	20	41101196	41101196	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr20:41101196A>C	uc002xkg.2	-	8	1344	c.1160T>G	c.(1159-1161)GTA>GGA	p.V387G	PTPRT_uc010ggj.2_Missense_Mutation_p.V387G	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	387	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGGCCATGTACCGGATCTGC	0.547000													26	14					0	0	0.003954	0	0	
SLC12A5	57468	broad.mit.edu	37	20	44665965	44665965	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr20:44665965T>A	uc010zxl.1	+	6	698	c.622T>A	c.(622-624)TAC>AAC	p.Y208N	SLC12A5_uc002xra.2_Missense_Mutation_p.Y185N|SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.Y185N	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	208	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CCTCTGCTTCTACCTGGGCAC	0.572000													14	28					0	0	0.002450	0	0	
RAB22A	57403	broad.mit.edu	37	20	56886153	56886153	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr20:56886153G>T	uc002xyz.2	+	2	353	c.91G>T	c.(91-93)GAT>TAT	p.D31Y		NM_020673	NP_065724	Q9UL26	RB22A_HUMAN	RAS-related protein RAB-22A	31					endocytosis|endosome organization|protein transport|small GTPase mediated signal transduction	early endosome|endosome membrane|plasma membrane	GTP binding|GTPase activity|protein binding				0	all_epithelial(3;5.09e-14)|Lung NSC(12;0.000122)|all_lung(29;0.00042)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;4.73e-08)|all cancers(14;4.83e-07)			AGACAGTTTTGATCCAAACAT	0.388000													50	70					1.47857e-17	1.77012e-17	0.014410	1	0	
TPTE	7179	broad.mit.edu	37	21	10941929	10941929	+	Silent	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr21:10941929A>C	uc002yip.1	-	14	1142	c.774T>G	c.(772-774)TCT>TCG	p.S258S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.S240S|TPTE_uc002yir.1_Silent_p.S220S|TPTE_uc010gkv.1_Silent_p.S120S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	258	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTCTATAGAAAGACTGCCTTC	0.313000													26	160					0	0	0.004656	0	0	
TPTE	7179	broad.mit.edu	37	21	10941963	10941963	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr21:10941963A>C	uc002yip.1	-	14	1108	c.740T>G	c.(739-741)ATT>AGT	p.I247S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.I229S|TPTE_uc002yir.1_Missense_Mutation_p.I209S|TPTE_uc010gkv.1_Missense_Mutation_p.I109S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	247	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGACATAGCAATAATACGTTC	0.284000													20	161					0	0	0.008871	0	0	
COL6A2	1292	broad.mit.edu	37	21	47545973	47545973	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr21:47545973C>T	uc002zia.1	+	26	2326	c.2244C>T	c.(2242-2244)TGC>TGT	p.C748C	COL6A2_uc002zhy.1_Silent_p.C748C|COL6A2_uc002zhz.1_Silent_p.C748C|COL6A2_uc002zib.1_Silent_p.C154C|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	748	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GGGCGCTGTGCGACCGCGACG	0.627000													11	121					0	0	0.008291	0	0	
COL6A2	1292	broad.mit.edu	37	21	47552310	47552310	+	Silent	SNP	C	T	T	rs143569686		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr21:47552310C>T	uc002zia.1	+	28	2986	c.2904C>T	c.(2902-2904)AAC>AAT	p.N968N	COL6A2_uc002zib.1_Silent_p.N374N|COL6A2_uc002zic.1_Missense_Mutation_p.T43M|COL6A2_uc010gqe.1_RNA	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	968	Nonhelical region.|VWFA 3.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GCAAGCAGAACGTGGTACCCA	0.667000													17	15					0	0	0.004990	0	0	
PI4KAP2	375133	broad.mit.edu	37	22	21829507	21829507	+	Missense_Mutation	SNP	G	A	A	rs140118179	by1000genomes	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr22:21829507G>A	uc002zuv.3	-	14	3895	c.1636C>T	c.(1636-1638)CTC>TTC	p.L546F	PI4KAP2_uc002zuw.2_Intron|PI4KAP2_uc011aid.1_Intron					SubName: Full=Putative uncharacterized protein PI4KA;												0						TACTTCAAGAGCTTGATTGTC	0.542000													9	11					0	0	0.008291	0	0	
FAM83F	113828	broad.mit.edu	37	22	40417654	40417654	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr22:40417654G>A	uc003ayk.1	+	4	1234	c.1140G>A	c.(1138-1140)ACG>ACA	p.T380T		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	380										breast(1)	1						ACCTGGTTACGGTGGAGCAGG	0.672000													8	27					0	0	0.004482	0	0	
TBC1D22A	25771	broad.mit.edu	37	22	47274558	47274558	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr22:47274558G>A	uc003bib.2	+	5	782	c.647G>A	c.(646-648)CGG>CAG	p.R216Q	TBC1D22A_uc010haf.2_Missense_Mutation_p.R186Q|TBC1D22A_uc003bic.2_Missense_Mutation_p.R157Q|TBC1D22A_uc003bie.2_Missense_Mutation_p.R138Q|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Missense_Mutation_p.R169Q	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	216						intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		GAGGAATTACGGAGGTTGAGC	0.488000													5	67					0	0	0.001168	0	0	
GRM7	2917	broad.mit.edu	37	3	7456772	7456772	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:7456772G>A	uc003bqm.2	+	5	1370	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E366K|GRM7_uc003bql.2_Missense_Mutation_p.E366K|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	366	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	ATGGTTTGCCGAATACTGGGA	0.408000													22	22					0	0	0.012319	0	0	
WDR6	11180	broad.mit.edu	37	3	49049539	49049539	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:49049539C>T	uc003cvj.2	+	2	800	c.662C>T	c.(661-663)ACT>ATT	p.T221I	WDR6_uc011bbx.1_Missense_Mutation_p.T92I|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Missense_Mutation_p.T165I|WDR6_uc011bbz.1_Missense_Mutation_p.T140I	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	191	WD 2.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		TACCCAGCAACTGCCTTAGCA	0.542000													31	57					0	0	0.008361	0	0	
GRM2	2912	broad.mit.edu	37	3	51749890	51749890	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:51749890G>A	uc010hlv.2	+	4	2340	c.2101G>A	c.(2101-2103)GAG>AAG	p.E701K	GRM2_uc003dbo.3_Missense_Mutation_p.E83K|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	701	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GCTGGTGGTGGAGGCACCGGG	0.657000													13	29					0	0	0.002450	0	0	
TLR9	54106	broad.mit.edu	37	3	52257833	52257833	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:52257833G>T	uc003dda.1	-	2	1133	c.499C>A	c.(499-501)CAT>AAT	p.H167N	TLR9_uc003ddb.2_Missense_Mutation_p.H264N	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	167	LRR 5.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CGCAGGGCATGCAGGCCGGCG	0.597000													23	142					5.35356e-11	6.12178e-11	0.016522	1	0	
CNTN3	5067	broad.mit.edu	37	3	74344358	74344358	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:74344358C>A	uc003dpm.1	-	18	2511	c.2431G>T	c.(2431-2433)GCA>TCA	p.A811S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	811	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AGGCTATTTGCAGAGACTTGA	0.383000													12	37					1.08611e-07	1.19895e-07	0.010729	1	0	
IMPG2	50939	broad.mit.edu	37	3	100972610	100972610	+	Missense_Mutation	SNP	C	T	T	rs139255481	byFrequency	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:100972610C>T	uc003duq.1	-	11	1372	c.1169G>A	c.(1168-1170)CGT>CAT	p.R390H	IMPG2_uc011bhe.1_Missense_Mutation_p.R253H	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	390	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						AGTTTGGTGACGCAAAACTCC	0.393000													5	18					0	0	0.014758	0	0	
ZIC1	7545	broad.mit.edu	37	3	147128842	147128842	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:147128842C>T	uc003ewe.2	+	1	1662	c.943C>T	c.(943-945)CGC>TGC	p.R315C		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	315	C2H2-type 3.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GGTCTTCGCGCGCTCCGAGAA	0.562000													24	47					0	0	0.014323	0	0	
KCNMB2	10242	broad.mit.edu	37	3	178560462	178560462	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:178560462G>A	uc003fjd.2	+	5	788	c.445G>A	c.(445-447)GGA>AGA	p.G149R	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Missense_Mutation_p.G149R|KCNMB2_uc003fjf.2_Missense_Mutation_p.G149R|KCNMB2_uc011bqa.1_Intron|KCNMB2_uc011bqb.1_RNA	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	149	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			ACCTAAATGTGGAAAAAATTT	0.403000													32	46					0	0	0.009535	0	0	
ABCC5	10057	broad.mit.edu	37	3	183660618	183660618	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:183660618G>A	uc003fmg.2	-	25	3756	c.3591C>T	c.(3589-3591)AAC>AAT	p.N1197N	ABCC5_uc011bqt.1_Silent_p.N725N|ABCC5_uc010hxl.2_Silent_p.N1154N	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	1197	ABC transporter 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCATCTCTGCGTTCTCAAAGG	0.527000													28	43					0	0	0.004656	0	0	
MAP3K13	9175	broad.mit.edu	37	3	185195129	185195129	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:185195129T>A	uc010hyf.2	+	13	2712	c.2446T>A	c.(2446-2448)TCA>ACA	p.S816T	MAP3K13_uc011brt.1_Missense_Mutation_p.S609T|MAP3K13_uc011bru.1_Missense_Mutation_p.S672T|MAP3K13_uc003fpi.2_Missense_Mutation_p.S816T|MAP3K13_uc010hyg.2_Missense_Mutation_p.S506T	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	816	Acidic.				activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGATGACTCCTCAGAAGAGGA	0.408000													13	24					0	0	0.013537	0	0	
MUC4	4585	broad.mit.edu	37	3	195492218	195492218	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr3:195492218C>G	uc011bto.1	-	10	13797	c.13337G>C	c.(13336-13338)TGG>TCG	p.W4446S	MUC4_uc003fuz.2_Missense_Mutation_p.W172S|MUC4_uc003fva.2_Missense_Mutation_p.W54S|MUC4_uc003fvb.2_Missense_Mutation_p.W90S|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.W90S|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.W54S|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.W138S|MUC4_uc011bti.1_Missense_Mutation_p.W138S|MUC4_uc011btj.1_Missense_Mutation_p.W315S|MUC4_uc011btk.1_Missense_Mutation_p.W54S|MUC4_uc011btl.1_Missense_Mutation_p.W83S|MUC4_uc011btm.1_Missense_Mutation_p.W263S|MUC4_uc011btn.1_Missense_Mutation_p.W54S|MUC4_uc003fvo.2_Missense_Mutation_p.W338S|MUC4_uc003fvp.2_Missense_Mutation_p.W287S|MUC4_uc010hzu.1_Missense_Mutation_p.W1186S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1331	AMOP.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GTTCCAGCCCCAGCTGGGCCA	0.632000													16	33					0	0	0.003163	0	0	
HTT	3064	broad.mit.edu	37	4	3240697	3240697	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:3240697C>T	uc011bvq.1	+	67	9358	c.9213C>T	c.(9211-9213)GTC>GTT	p.V3071V		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	3069					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GCCCGTGGGTCGCGGCGATGT	0.592000													6	7					0	0	0.001168	0	0	
GABRB1	2560	broad.mit.edu	37	4	47405587	47405587	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:47405587C>T	uc003gxh.2	+	7	1068	c.694C>T	c.(694-696)CGA>TGA	p.R232*	GABRB1_uc011bze.1_Nonsense_Mutation_p.R162*	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	232	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	AGCGTATCCACGACTGTCACT	0.403000													6	67					0	0	0.001168	0	0	
CEP170L	645455	broad.mit.edu	37	4	119461400	119461400	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:119461400C>T	uc003icb.2	+	4	297	c.213C>T	c.(211-213)AGC>AGT	p.S71S		NR_003135				RecName: Full=Cep170-like protein;												0						TTGATGAAAGCCTCAACTTCC	0.408000													4	31					0	0	0.009096	0	0	
FAT4	79633	broad.mit.edu	37	4	126237908	126237908	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:126237908G>A	uc003ifj.3	+	1	342	c.342G>A	c.(340-342)GCG>GCA	p.A114A		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	114	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTTCCAGCGCGCCCACCTACC	0.607000											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	24					0	0	0.001855	0	0	
ELF2	1998	broad.mit.edu	37	4	139994712	139994712	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:139994712G>A	uc003ihp.1	-	4	454	c.248C>T	c.(247-249)TCA>TTA	p.S83L	ELF2_uc003ihm.1_Missense_Mutation_p.S23L|ELF2_uc003ihn.1_Missense_Mutation_p.S23L|ELF2_uc003iho.1_Missense_Mutation_p.S23L|ELF2_uc010ioh.2_Missense_Mutation_p.S23L	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	83					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					GCTGTGAACTGATGCTTCCAC	0.363000													18	20					0	0	0.007413	0	0	
RBM46	166863	broad.mit.edu	37	4	155719267	155719267	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:155719267G>T	uc003ioo.2	+	3	629	c.456G>T	c.(454-456)AAG>AAT	p.K152N	RBM46_uc011cim.1_Missense_Mutation_p.K152N|RBM46_uc003iop.1_Missense_Mutation_p.K152N	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	152	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				CCAAGGAAAAGAAGAAAGAAG	0.328000													12	43					2.80697e-09	3.13938e-09	0.010729	1	0	
FSTL5	56884	broad.mit.edu	37	4	162307121	162307121	+	Silent	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:162307121C>A	uc003iqh.2	-	16	2758	c.2322G>T	c.(2320-2322)GGG>GGT	p.G774G	FSTL5_uc003iqi.2_Silent_p.G773G|FSTL5_uc010iqv.2_Silent_p.G764G|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	774						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TCTTGACCTTCCCAGAAGAGA	0.458000													26	71					1.66031e-10	1.88168e-10	0.003954	1	0	
TMEM192	201931	broad.mit.edu	37	4	166021837	166021837	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:166021837A>G	uc003iqz.3	-	3	481	c.382T>C	c.(382-384)TTG>CTG	p.L128L		NM_001100389	NP_001093859	Q8IY95	TM192_HUMAN	transmembrane protein 192	128	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|late endosome|lysosomal membrane|nucleus				skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0926)		CGGTAGATCAAGTTATAGCCT	0.423000													11	21					0	0	0.008291	0	0	
FAT1	2195	broad.mit.edu	37	4	187541092	187541092	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr4:187541092G>T	uc003izf.2	-	10	6836	c.6648C>A	c.(6646-6648)TAC>TAA	p.Y2216*		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2216	Extracellular (Potential).|Cadherin 20.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CTGTGATGCTGTAGAACACTT	0.507000										HNSCC(5;0.00058)			40	64					1.07637e-12	1.24761e-12	0.004878	1	0	
CDH18	1016	broad.mit.edu	37	5	19838884	19838884	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:19838884G>A	uc003jgc.2	-	2	589	c.212C>T	c.(211-213)CCT>CTT	p.P71L	CDH18_uc003jgd.2_Missense_Mutation_p.P71L|CDH18_uc011cnm.1_Missense_Mutation_p.P71L	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	71	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AACATACTGAGGATCTGGTCC	0.383000													9	40					0	0	0.004482	0	0	
ATG10	83734	broad.mit.edu	37	5	81474361	81474361	+	Nonsense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:81474361T>A	uc003khs.2	+	6	837	c.408T>A	c.(406-408)TAT>TAA	p.Y136*	ATG10_uc003khr.2_Nonsense_Mutation_p.Y136*|ATG10_uc010jas.2_Nonsense_Mutation_p.Y100*	NM_001131028	NP_001124500	Q9H0Y0	ATG10_HUMAN	APG10 autophagy 10-like	136					autophagy in response to ER overload|positive regulation of protein modification process|protein lipidation|protein modification by small protein conjugation|protein transport	cytoplasm	Atg12 ligase activity|protein binding				0		Lung NSC(167;0.0258)|all_lung(232;0.0294)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;9.94e-41)|Epithelial(54;6.3e-36)|all cancers(79;2.31e-30)		ATGAGTGCTATAAGATGCGAC	0.378000													17	55					0	0	0.004007	0	0	
VCAN	1462	broad.mit.edu	37	5	82835937	82835937	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:82835937G>T	uc003kii.3	+	8	7471	c.7115G>T	c.(7114-7116)AGT>ATT	p.S2372I	VCAN_uc003kij.3_Missense_Mutation_p.S1385I|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.S1036I	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2372	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ATCCAGACTAGTAGACCACAA	0.458000													33	41					2.2171e-23	2.70508e-23	0.009535	1	0	
VCAN	1462	broad.mit.edu	37	5	82837419	82837419	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:82837419A>T	uc003kii.3	+	8	8953	c.8597A>T	c.(8596-8598)AAG>ATG	p.K2866M	VCAN_uc003kij.3_Missense_Mutation_p.K1879M|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.K1530M	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2866	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GATTCTTTTAAGGAAATTCAT	0.453000													8	87					0	0	0.003080	0	0	
TTC37	9652	broad.mit.edu	37	5	94857966	94857966	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:94857966C>A	uc003klb.2	-	19	2073	c.1803G>T	c.(1801-1803)TGG>TGT	p.W601C	TTC37_uc010jbf.1_Missense_Mutation_p.W553C	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	601	TPR 10.						binding			ovary(3)|pancreas(1)	4						CTAACGATTCCCAACAATTGA	0.408000													19	51					1.67942e-08	1.87009e-08	0.006122	1	0	
TRIM36	55521	broad.mit.edu	37	5	114473223	114473223	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:114473223C>T	uc003kqs.2	-	6	1467	c.958G>A	c.(958-960)GCA>ACA	p.A320T	TRIM36_uc011cwc.1_Missense_Mutation_p.A308T|TRIM36_uc003kqt.2_Missense_Mutation_p.A165T	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	320	Potential.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		GAGTCAATTGCTTTCAAAACA	0.368000													21	75					0	0	0.008871	0	0	
TIFAB	497189	broad.mit.edu	37	5	134785360	134785360	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:134785360C>T	uc003law.3	-	2	471	c.270G>A	c.(268-270)ACG>ACA	p.T90T	C5orf20_uc003lav.2_5'Flank	NM_001099221	NP_001092691	Q6ZNK6	TIFAB_HUMAN	TIFA-related protein TIFAB	90	FHA.										0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTACCTCAGCGTCAGCCCAT	0.622000													13	101					0	0	0.001855	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140249772	140249772	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:140249772G>A	uc003lia.2	+	1	1942	c.1084G>A	c.(1084-1086)GCT>ACT	p.A362T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.A362T	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	362	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGAGAGGACGCTCAGCCCAG	0.572000													35	24					0	0	0.013726	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140249918	140249918	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:140249918C>T	uc003lia.2	+	1	2088	c.1230C>T	c.(1228-1230)AGC>AGT	p.S410S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.S410S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	410	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCTGGACAGCGCCCTGGACC	0.617000													69	40					0	0	0.014410	0	0	
PCDHGA2	56113	broad.mit.edu	37	5	140720422	140720422	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:140720422G>A	uc003ljk.1	+	1	2069	c.1884G>A	c.(1882-1884)ACG>ACA	p.T628T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.T628T	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	628	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGCGCACGGCGCGAGCCC	0.682000													56	71					0	0	0.014410	0	0	
PCDHGA12	26025	broad.mit.edu	37	5	140811189	140811189	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:140811189C>T	uc003lkt.1	+	1	1032	c.863C>T	c.(862-864)GCG>GTG	p.A288V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.A288V	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	288	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGACAAGGCGGCCCAAGTT	0.512000													9	119					0	0	0.004482	0	0	
SH3TC2	79628	broad.mit.edu	37	5	148411175	148411175	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:148411175C>A	uc003lpu.2	-	9	1229	c.1077G>T	c.(1075-1077)GAG>GAT	p.E359D	SH3TC2_uc003lpp.1_RNA|SH3TC2_uc010jgw.2_5'UTR|SH3TC2_uc003lps.2_RNA|SH3TC2_uc003lpt.2_5'UTR|SH3TC2_uc010jgx.2_Missense_Mutation_p.E352D|SH3TC2_uc003lpv.1_5'UTR|SH3TC2_uc011dbz.1_Missense_Mutation_p.E244D	NM_024577	NP_078853	Q8TF17	S3TC2_HUMAN	SH3 domain and tetratricopeptide repeats 2	359							binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGGAACACTCAGTCTGCT	0.537000													11	27					3.86212e-05	4.13799e-05	0.008291	1	0	
GRIA1	2890	broad.mit.edu	37	5	152870498	152870498	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:152870498T>C	uc003lva.3	+	1	415	c.50T>C	c.(49-51)GTA>GCA	p.V17A	GRIA1_uc003luy.3_Missense_Mutation_p.V17A|GRIA1_uc003luz.3_5'UTR|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.V17A|GRIA1_uc011dcx.1_5'Flank|GRIA1_uc011dcy.1_5'Flank|GRIA1_uc011dcz.1_5'Flank|GRIA1_uc010jia.1_Intron	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	17					synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCGCGGTAGTAGGTGCCAAT	0.512000													17	92					0	0	0.004990	0	0	
EBF1	1879	broad.mit.edu	37	5	158223440	158223440	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:158223440C>T	uc010jip.2	-	9	1124	c.822G>A	c.(820-822)ACG>ACA	p.T274T	EBF1_uc011ddw.1_Silent_p.T142T|EBF1_uc011ddx.1_Silent_p.T275T|EBF1_uc003lxl.3_Silent_p.T243T	NM_024007	NP_076870	Q9UH73	COE1_HUMAN	early B-cell factor	274	IPT/TIG.				multicellular organismal development	nucleus	DNA binding|metal ion binding		HMGA2/EBF1(2)	soft_tissue(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Acute lymphoblastic leukemia(3;2.99e-06)|all_hematologic(3;0.000772)|Medulloblastoma(196;0.037)|all_neural(177;0.143)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACCTCCCGTCGTCCATCCTT	0.468000			T	HMGA2	lipoma								3	18					0	0	0.004672	0	0	
GABRA1	2554	broad.mit.edu	37	5	161324161	161324161	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr5:161324161C>T	uc010jiw.2	+	11	1572	c.1104C>T	c.(1102-1104)TAC>TAT	p.Y368Y	GABRA1_uc010jix.2_Silent_p.Y368Y|GABRA1_uc010jiy.2_Silent_p.Y368Y|GABRA1_uc003lyx.3_Silent_p.Y368Y|GABRA1_uc010jiz.2_Silent_p.Y368Y|GABRA1_uc010jja.2_Silent_p.Y368Y|GABRA1_uc010jjb.2_Silent_p.Y368Y	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	368	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	ACAACACTTACGCTCCAACAG	0.423000													46	59					0	0	0.010771	0	0	
RREB1	6239	broad.mit.edu	37	6	7182219	7182219	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:7182219G>A	uc003mxc.2	+	4	465	c.75G>A	c.(73-75)ATG>ATA	p.M25I	RREB1_uc010jnw.2_Missense_Mutation_p.M25I|RREB1_uc003mxb.2_Missense_Mutation_p.M25I|RREB1_uc010jnx.2_Missense_Mutation_p.M25I|RREB1_uc003mxd.2_Missense_Mutation_p.M25I	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	25					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CGGCGGTCATGAGTGTAGGGA	0.547000													18	98					0	0	0.004990	0	0	
ZNF192	7745	broad.mit.edu	37	6	28121579	28121579	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:28121579A>G	uc003nkn.1	+	6	1705	c.1521A>G	c.(1519-1521)GAA>GAG	p.E507E	ZNF192_uc010jqx.1_Silent_p.E507E|ZNF192_uc010jqy.1_Silent_p.E320E|ZNF192_uc011dkz.1_Silent_p.E320E	NM_006298	NP_006289	Q15776	ZN192_HUMAN	zinc finger protein 192	507	C2H2-type 7.				viral reproduction	cytoplasm|nucleolus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCCTTATTGAACATCAGAGAA	0.453000													7	52					0	0	0.001984	0	0	
OR12D2	26529	broad.mit.edu	37	6	29365024	29365024	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:29365024T>C	uc003nmf.3	+	1	609	c.548T>C	c.(547-549)CTA>CCA	p.L183P		NM_013936	NP_039224	P58182	O12D2_HUMAN	olfactory receptor, family 12, subfamily D,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AAGCCATTGCTAAAGCTGGCC	0.478000													19	123					0	0	0.006122	0	0	
GPSM3	63940	broad.mit.edu	37	6	32159232	32159232	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:32159232C>T	uc003oay.3	-	4	787	c.394G>A	c.(394-396)GGG>AGG	p.G132R	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Missense_Mutation_p.G109R|GPSM3_uc003oaz.2_Missense_Mutation_p.G132R	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	132	GoLoco 3.				signal transduction	cytoplasm	GTPase activator activity|protein binding				0						AGCTCTTGCCCCCCTGGAGGG	0.647000													29	68					0	0	0.007291	0	0	
KIFC1	3833	broad.mit.edu	37	6	33374045	33374045	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:33374045C>T	uc003oef.3	+	8	2059	c.1609C>T	c.(1609-1611)CGC>TGC	p.R537C	KIFC1_uc011drf.1_Missense_Mutation_p.R529C	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	537	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						ACGGTCATCACGCAGCCACAG	0.627000													16	117					0	0	0.003163	0	0	
DNAH8	1769	broad.mit.edu	37	6	38899592	38899592	+	Silent	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:38899592A>G	uc003ooe.1	+	74	11229	c.10629A>G	c.(10627-10629)AAA>AAG	p.K3543K	DNAH8_uc003oog.1_5'UTR|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGTAGGTGAAAGTCGGTGATA	0.214000													43	67					0	0	0.008740	0	0	
DAAM2	23500	broad.mit.edu	37	6	39869752	39869752	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:39869752G>A	uc003oow.2	+	25	3302	c.3146G>A	c.(3145-3147)CGA>CAA	p.R1049Q	DAAM2_uc003oox.2_Missense_Mutation_p.R1048Q	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	1049					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					AGCCGCAAGCGATCAGGGAGC	0.607000													4	28					0	0	0.009096	0	0	
PEX6	5190	broad.mit.edu	37	6	42941748	42941748	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:42941748G>A	uc003otf.2	-	3	1216	c.1123C>T	c.(1123-1125)CTG>TTG	p.L375L	PEX6_uc010jya.2_RNA	NM_000287	NP_000278	Q13608	PEX6_HUMAN	peroxisomal biogenesis factor 6	375					protein import into peroxisome matrix, translocation|protein stabilization	cytosol|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)	1			all cancers(41;0.00235)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.0562)			TACCTGGGCAGTTTCTCTGGA	0.512000													13	25					0	0	0.013537	0	0	
ORC3L	23595	broad.mit.edu	37	6	88376828	88376828	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:88376828G>A	uc003pmh.2	+	20	2167	c.2123G>A	c.(2122-2124)TGG>TAG	p.W708*	ORC3L_uc003pmg.2_Nonsense_Mutation_p.W709*|ORC3L_uc003pmi.2_Nonsense_Mutation_p.W671*|ORC3L_uc011dzo.1_Nonsense_Mutation_p.W565*|ORC3L_uc011dzp.1_Nonsense_Mutation_p.W565*|ORC3L_uc003pmj.1_RNA	NM_012381	NP_036513	Q9UBD5	ORC3_HUMAN	origin recognition complex, subunit 3 isoform 2	708					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0		all_cancers(76;9.05e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.0469)		AGACTAACATGGGGAGGCTGC	0.398000													17	16					0	0	0.004007	0	0	
UTRN	7402	broad.mit.edu	37	6	145124231	145124231	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr6:145124231G>A	uc003qkt.2	+	64	9397	c.9305G>A	c.(9304-9306)CGA>CAA	p.R3102Q		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3102	Interaction with SYNM.|ZZ-type.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		TTTTCGGGTCGAACAGCAAAA	0.338000													8	32					0	0	0.003080	0	0	
ZFAND2A	90637	broad.mit.edu	37	7	1197307	1197307	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:1197307C>T	uc003skc.2	-	3	436	c.135G>A	c.(133-135)CCG>CCA	p.P45P	ZFAND2A_uc003skd.3_Silent_p.P45P|uc003skf.1_5'Flank	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	45	AN1-type 1.					cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		GGAATGCAAACGGACACTTAT	0.284000													78	142					0	0	0.014410	0	0	
SDK1	221935	broad.mit.edu	37	7	4008964	4008964	+	Missense_Mutation	SNP	C	T	T	rs146705640	by1000genomes	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:4008964C>T	uc003smx.2	+	11	1761	c.1622C>T	c.(1621-1623)GCG>GTG	p.A541V		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	541	Ig-like C2-type 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTACAGATCGCGCCCGTCTTC	0.552000													74	182					0	0	0.014410	0	0	
FBXL18	80028	broad.mit.edu	37	7	5521433	5521433	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:5521433G>A	uc003son.3	-	5	2224	c.2130C>T	c.(2128-2130)GCC>GCT	p.A710A		NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	Error:Variant_position_missing_in_Q96ME1_after_alignment										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		GCGGTTCCTCGGCCACTCTGC	0.637000													9	161					0	0	0.004482	0	0	
C7orf28A	51622	broad.mit.edu	37	7	5949682	5949682	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:5949682G>A	uc003spf.2	+	8	805	c.715G>A	c.(715-717)GAT>AAT	p.D239N		NM_015622	NP_056437	P86791	CCZ1_HUMAN	hypothetical protein LOC51622	239						lysosomal membrane					0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0974)|OV - Ovarian serous cystadenocarcinoma(56;7.91e-15)		ATTAGAACAAGATGACATGAG	0.408000													19	20					0	0	0.016522	0	0	
C7orf28B	221960	broad.mit.edu	37	7	6854460	6854460	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:6854460C>T	uc003sqx.1	-	8	748	c.715G>A	c.(715-717)GAT>AAT	p.D239N	C7orf28B_uc011jxd.1_Missense_Mutation_p.D96N	NM_198097	NP_932765	P86791	CCZ1_HUMAN	hypothetical protein LOC221960	239						lysosomal membrane					0		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)		CTCATGTCATCTTGTTCTAAT	0.408000													9	107					0	0	0.013537	0	0	
FERD3L	222894	broad.mit.edu	37	7	19184535	19184535	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:19184535A>G	uc003suo.1	-	1	510	c.451T>C	c.(451-453)TCC>CCC	p.S151P	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	151	Helix-loop-helix motif.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						GTCATGAAGGAGATATAGACG	0.582000													4	40					0	0	0.009096	0	0	
ABCB5	340273	broad.mit.edu	37	7	20698214	20698214	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:20698214G>A	uc003suw.3	+	5	833	c.287G>A	c.(286-288)CGA>CAA	p.R96Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R541Q|ABCB5_uc003suv.3_Missense_Mutation_p.R96Q|ABCB5_uc011jyi.1_Missense_Mutation_p.R96Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	96	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						GCCTTAGTTCGAAACCCCAAG	0.438000													8	56					0	0	0.003080	0	0	
TRA2A	29896	broad.mit.edu	37	7	23556109	23556109	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:23556109C>T	uc003swi.2	-	3	423	c.209G>A	c.(208-210)CGA>CAA	p.R70Q	TRA2A_uc011jzb.1_RNA|TRA2A_uc011jzc.1_5'UTR|TRA2A_uc011jzd.1_5'UTR|TRA2A_uc010kuo.1_RNA	NM_013293	NP_037425	Q13595	TRA2A_HUMAN	transformer-2 alpha	70	Arg/Ser-rich (RS1 domain).				nuclear mRNA splicing, via spliceosome	nucleus	nucleotide binding|RNA binding			ovary(1)	1						GGATCTGGATCGAGTGTAACG	0.443000													9	68					0	0	0.004482	0	0	
BMPER	168667	broad.mit.edu	37	7	34182863	34182863	+	Silent	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:34182863T>C	uc011kap.1	+	14	1881	c.1767T>C	c.(1765-1767)TGT>TGC	p.C589C		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	589					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CAGACATGTGTGAATGTCCAG	0.428000													7	111					0	0	0.003080	0	0	
ELMO1	9844	broad.mit.edu	37	7	36934570	36934570	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:36934570C>G	uc003tfk.1	-	17	1797	c.1490G>C	c.(1489-1491)AGC>ACC	p.S497T	ELMO1_uc003tfi.1_Missense_Mutation_p.S17T|ELMO1_uc003tfj.1_Missense_Mutation_p.S17T|ELMO1_uc011kbb.1_RNA|ELMO1_uc011kbc.1_Missense_Mutation_p.S401T|ELMO1_uc010kxg.1_Missense_Mutation_p.S497T	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	497					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						GTCCAGGGAGCTAGGCTTGGT	0.507000													10	62					0	0	0.006214	0	0	
GLI3	2737	broad.mit.edu	37	7	42007505	42007506	+	Missense_Mutation	DNP	GG	CT	CT	rs121917716	byFrequency	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:42007505_42007506GG>CT	uc011kbh.1	-	14	2210_2211	c.2119_2120CC>AG	c.(2119-2121)CCT>AGT	p.P707S	GLI3_uc011kbg.1_Missense_Mutation_p.P648S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	707			P -> S (in GCPS).		negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CTGACCACCAGGGCTTGGCTGA	0.520000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				10	95					0	0	0.004672	0	0	
CAMK2B	816	broad.mit.edu	37	7	44323802	44323802	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:44323802G>A	uc003tkq.2	-	2	298	c.88C>T	c.(88-90)CGC>TGC	p.R30C	CAMK2B_uc003tkp.2_Missense_Mutation_p.R30C|CAMK2B_uc003tkx.2_Missense_Mutation_p.R30C|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.R30C|CAMK2B_uc003tks.2_Missense_Mutation_p.R30C|CAMK2B_uc003tku.2_Missense_Mutation_p.R30C|CAMK2B_uc003tkv.2_Missense_Mutation_p.R30C|CAMK2B_uc003tkt.2_Missense_Mutation_p.R30C|CAMK2B_uc003tkw.2_Missense_Mutation_p.R30C|CAMK2B_uc010kyc.2_Missense_Mutation_p.R30C	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	30	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						TTGACACAGCGTCGGACCACA	0.478000													7	15					0	0	0.001984	0	0	
CLIP2	7461	broad.mit.edu	37	7	73790905	73790905	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:73790905G>A	uc003uam.2	+	10	2501	c.2174G>A	c.(2173-2175)CGC>CAC	p.R725H	CLIP2_uc003uan.2_Missense_Mutation_p.R690H|CLIP2_uc003uao.2_Missense_Mutation_p.R119H	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	725	Potential.					microtubule associated complex				skin(3)	3						CAGGACCAGCGCCGGGATGCC	0.687000													15	16					0	0	0.002450	0	0	
PCLO	27445	broad.mit.edu	37	7	82764700	82764700	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:82764700C>A	uc003uhx.2	-	3	2455	c.2166G>T	c.(2164-2166)CAG>CAT	p.Q722H	PCLO_uc003uhv.2_Missense_Mutation_p.Q722H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	668	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCTCAGGGGGCTGCTTGGCCT	0.537000													7	53					0.00198382	0.0020564	0.001984	1	0	
PCLO	27445	broad.mit.edu	37	7	82784197	82784197	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:82784197G>C	uc003uhx.2	-	2	2049	c.1760C>G	c.(1759-1761)ACC>AGC	p.T587S	PCLO_uc003uhv.2_Missense_Mutation_p.T587S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	533	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AGGACAGATGGTTTTAGGGAG	0.458000													23	279					0	0	0.012319	0	0	
MGC26647	219557	broad.mit.edu	37	7	88424067	88424067	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:88424067C>A	uc003ujv.2	-	2	372	c.190G>T	c.(190-192)GAT>TAT	p.D64Y	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	64											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TCAGCAACATCTTTTCTTTCT	0.393000													24	80					2.21704e-12	2.55812e-12	0.016522	1	0	
C7orf52	375607	broad.mit.edu	37	7	100816771	100816771	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:100816771C>G	uc003uxy.1	-	3	582	c.343G>C	c.(343-345)GCC>CCC	p.A115P	C7orf52_uc003uxz.1_Missense_Mutation_p.A115P	NM_198571	NP_940973	Q8N8M0	CG052_HUMAN	hypothetical protein LOC375607	115	N-acetyltransferase.						N-acetyltransferase activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					GTCTCCCCGGCGTCGATCACG	0.736000													9	18					0	0	0.004482	0	0	
SRPK2	6733	broad.mit.edu	37	7	104909363	104909363	+	Translation_Start_Site	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:104909363T>A	uc003vct.2	-	1	115	c.-72A>T	c.(-74--70)AAAGC>AATGC		SRPK2_uc003vcu.2_Intron|SRPK2_uc003vcv.2_Intron|SRPK2_uc003vcw.1_Intron	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2						angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTGCCCTTGCTTTCAAGCCTT	0.403000													5	14					0	0	0.014758	0	0	
PPP1R3A	5506	broad.mit.edu	37	7	113519479	113519479	+	Silent	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:113519479T>C	uc010ljy.1	-	4	1699	c.1668A>G	c.(1666-1668)GGA>GGG	p.G556G		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	556					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGTTACTAGCTCCAATCCCTG	0.418000													26	63					0	0	0.004656	0	0	
TMEM139	135932	broad.mit.edu	37	7	142983557	142983557	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:142983557G>A	uc010lov.2	+	4	425	c.286G>A	c.(286-288)GTG>ATG	p.V96M	CASP2_uc003wco.2_5'Flank|CASP2_uc003wcp.2_5'Flank|CASP2_uc011kta.1_5'Flank|TMEM139_uc003wck.3_Missense_Mutation_p.V96M|TMEM139_uc003wcl.2_Missense_Mutation_p.V96M|TMEM139_uc003wcm.2_Missense_Mutation_p.V96M|TMEM139_uc003wcn.2_RNA	NM_153345	NP_699176	Q8IV31	TM139_HUMAN	transmembrane protein 139 precursor	96	Cytoplasmic (Potential).					integral to membrane					0	Melanoma(164;0.059)					TGAAGAGGCCGTGGTGGGACT	0.532000													8	90					0	0	0.004482	0	0	
MLL3	58508	broad.mit.edu	37	7	151835972	151835972	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:151835972C>T	uc003wla.2	-	58	14771	c.14552G>A	c.(14551-14553)TGT>TAT	p.C4851Y	MLL3_uc003wkz.2_Missense_Mutation_p.C3965Y|MLL3_uc003wkx.2_Missense_Mutation_p.C1009Y|MLL3_uc003wky.2_Missense_Mutation_p.C2411Y	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4851	SET.	Zinc (By similarity).			intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTAGGTGCACACGAATGGTT	0.408000			N		medulloblastoma								7	85					0	0	0.001984	0	0	
UBXN8	7993	broad.mit.edu	37	8	30623815	30623815	+	Missense_Mutation	SNP	C	T	T	rs34990535		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:30623815C>T	uc003xii.2	+	10	735	c.718C>T	c.(718-720)CGG>TGG	p.R240W	UBXN8_uc010lvi.2_3'UTR|UBXN8_uc011lbb.1_RNA|UBXN8_uc003xij.2_RNA	NM_005671	NP_005662	O00124	UBXN8_HUMAN	reproduction 8	240	UBX.				single fertilization						0						CTTTCCCAGACGGCCTCTGGC	0.488000													4	34					0	0	0.009096	0	0	
TERF1	7013	broad.mit.edu	37	8	73951418	73951418	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:73951418G>A	uc003xzd.2	+	9	1132	c.1107G>A	c.(1105-1107)CCG>CCA	p.P369P	TERF1_uc003xze.2_Silent_p.P349P	NM_017489	NP_059523	P54274	TERF1_HUMAN	telomeric repeat binding factor 1 isoform 1	369	Interaction with RLIM.				age-dependent telomere shortening|cell division|G2/M transition of mitotic cell cycle|induction of apoptosis|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of telomere maintenance via semi-conservative replication|negative regulation of telomere maintenance via telomerase|positive regulation of microtubule polymerization|positive regulation of mitosis|positive regulation of mitotic cell cycle|protein homooligomerization|regulation of transcription, DNA-dependent|telomere maintenance via telomerase|telomere maintenance via telomerase|telomere maintenance via telomere shortening	chromosome, telomeric region|cytoplasm|nuclear telomere cap complex|nucleoplasm|nucleus|spindle	caspase activator activity|DNA bending activity|double-stranded telomeric DNA binding|identical protein binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|telomerase inhibitor activity|telomeric DNA binding			ovary(1)|lung(1)|skin(1)	3	Breast(64;0.218)		Epithelial(68;0.0984)			AGAGTCAGCCGGTAACTCCTG	0.308000													8	22					0	0	0.003080	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77766219	77766219	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:77766219T>A	uc003yav.2	+	10	7314	c.6927T>A	c.(6925-6927)GAT>GAA	p.D2309E	ZFHX4_uc003yau.1_Missense_Mutation_p.D2354E|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2309E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2309						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACTCCATGGATGCCACTGATC	0.483000										HNSCC(33;0.089)			46	152					0	0	0.014410	0	0	
ZFHX4	79776	broad.mit.edu	37	8	77766560	77766560	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:77766560C>A	uc003yav.2	+	10	7655	c.7268C>A	c.(7267-7269)ACA>AAA	p.T2423K	ZFHX4_uc003yau.1_Missense_Mutation_p.T2468K|ZFHX4_uc003yaw.1_Missense_Mutation_p.T2423K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2423	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCTCTCAAACACCGGTCCCT	0.428000										HNSCC(33;0.089)			19	48					2.5808e-16	3.06095e-16	0.006122	1	0	
RIMS2	9699	broad.mit.edu	37	8	104898052	104898052	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:104898052T>C	uc003yls.2	+	2	800	c.559T>C	c.(559-561)TCT>CCT	p.S187P	RIMS2_uc003ylp.2_Missense_Mutation_p.S409P|RIMS2_uc003ylw.2_Missense_Mutation_p.S217P|RIMS2_uc003ylq.2_Missense_Mutation_p.S217P|RIMS2_uc003ylr.2_Missense_Mutation_p.S217P	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	440					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AAATCAGCGATCTTATTCAAT	0.468000										HNSCC(12;0.0054)			28	88					0	0	0.007291	0	0	
TRPS1	7227	broad.mit.edu	37	8	116599582	116599582	+	Silent	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:116599582C>T	uc003ynz.2	-	4	2766	c.2307G>A	c.(2305-2307)AAG>AAA	p.K769K	TRPS1_uc011lhy.1_Silent_p.K773K|TRPS1_uc003yny.2_Silent_p.K782K|TRPS1_uc010mcy.2_Silent_p.K769K	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	769	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TCTCTTCCAGCTTCTCTCTCT	0.502000									Langer-Giedion_syndrome				42	390					0	0	0.008740	0	0	
ADCY8	114	broad.mit.edu	37	8	132052235	132052235	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:132052235G>A	uc003ytd.3	-	1	601	c.345C>T	c.(343-345)AGC>AGT	p.S115S	ADCY8_uc010mds.2_Silent_p.S115S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	115	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGGCACTGCCGCTCCCGCTGC	0.662000										HNSCC(32;0.087)			6	10					0	0	0.001168	0	0	
TG	7038	broad.mit.edu	37	8	133925324	133925324	+	Missense_Mutation	SNP	C	T	T	rs140482581	byFrequency	TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:133925324C>T	uc003ytw.2	+	20	4233	c.4192C>T	c.(4192-4194)CGC>TGC	p.R1398C	TG_uc010mdw.2_Missense_Mutation_p.R157C	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1398					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCTCCTTGGGCGCTTCACAGA	0.552000													35	27					0	0	0.012213	0	0	
TG	7038	broad.mit.edu	37	8	134042161	134042161	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:134042161C>T	uc003ytw.2	+	41	7173	c.7132C>T	c.(7132-7134)CGG>TGG	p.R2378W	TG_uc010mdw.2_Missense_Mutation_p.R1137W|TG_uc011ljb.1_Missense_Mutation_p.R747W|TG_uc011ljc.1_Missense_Mutation_p.R511W	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2378					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CGGGGACCCTCGGCGCGTGTC	0.662000													19	46					0	0	0.016522	0	0	
CYP11B1	1584	broad.mit.edu	37	8	143961216	143961216	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr8:143961216G>T	uc003yxi.2	-	1	21	c.14C>A	c.(13-15)GCA>GAA	p.A5E	CYP11B1_uc003yxj.2_Missense_Mutation_p.A5E|CYP11B1_uc010mey.2_Missense_Mutation_p.A5E	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	5					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CTCTGCCTTTGCCCTGAGTGC	0.607000									Familial_Hyperaldosteronism_type_I				42	124					1.00953e-15	1.18631e-15	0.013114	1	0	
IFNB1	3456	broad.mit.edu	37	9	21077644	21077644	+	Silent	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:21077644G>A	uc003zok.2	-	1	300	c.225C>T	c.(223-225)GAC>GAT	p.D75D		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	75					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	TCAATGCGGCGTCCTCCTTCT	0.468000													60	77					0	0	0.014410	0	0	
GABBR2	9568	broad.mit.edu	37	9	101304173	101304173	+	Silent	SNP	G	A	A	rs142025089		TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:101304173G>A	uc004ays.2	-	3	768	c.612C>T	c.(610-612)GAC>GAT	p.D204D		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	204	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	ACCTCTGAACGTCTTGCGTCA	0.537000													5	38					0	0	0.014758	0	0	
USP20	10868	broad.mit.edu	37	9	132637006	132637006	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:132637006C>T	uc004bys.2	+	18	2103	c.1892C>T	c.(1891-1893)TCG>TTG	p.S631L	USP20_uc004byr.2_Missense_Mutation_p.S631L|USP20_uc004byt.1_Missense_Mutation_p.S631L	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	631					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				GACCTCCTCTCGGTCATCTGC	0.647000													6	90					0	0	0.001984	0	0	
SEC16A	9919	broad.mit.edu	37	9	139358985	139358985	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:139358985A>T	uc004chx.2	-	9	4642	c.4333T>A	c.(4333-4335)TTT>ATT	p.F1445I	SEC16A_uc004chv.3_Missense_Mutation_p.F835I|SEC16A_uc004chw.2_Missense_Mutation_p.F1445I|SEC16A_uc010nbn.2_Missense_Mutation_p.F1445I	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1267					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGCACTGAAAATTTTTCAGGA	0.438000													13	79					0	0	0.001855	0	0	
PNPLA7	375775	broad.mit.edu	37	9	140373543	140373543	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:140373543G>A	uc004cnf.2	-	23	2990	c.2653C>T	c.(2653-2655)CGC>TGC	p.R885C	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Missense_Mutation_p.R151C|PNPLA7_uc004cne.1_Missense_Mutation_p.R151C|PNPLA7_uc011mfa.1_Missense_Mutation_p.R293C|PNPLA7_uc010ncj.1_Missense_Mutation_p.R910C	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	885					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		AAGACGCGGCGCGGGCAGCAG	0.692000													3	3					0	0	0.009096	0	0	
GPRASP1	9737	broad.mit.edu	37	X	101912116	101912116	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chrX:101912116G>A	uc004ejj.3	+	5	4076	c.3275G>A	c.(3274-3276)AGC>AAC	p.S1092N	GPRASP1_uc004eji.3_Missense_Mutation_p.S1092N|GPRASP1_uc010nod.2_Missense_Mutation_p.S1092N	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	1092	OPRD1-binding.					cytoplasm	protein binding			ovary(1)|lung(1)	2						ATGGTACTTAGCCCAGAAGGG	0.473000													78	59					0	0	0.014410	0	0	
IRS4	8471	broad.mit.edu	37	X	107975886	107975886	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chrX:107975886T>A	uc004eoc.2	-	1	3722	c.3689A>T	c.(3688-3690)GAT>GTT	p.D1230V		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1230						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GTTGTCAGAATCTTCTCTCTC	0.552000													13	142					0	0	0.002450	0	0	
IRS4	8471	broad.mit.edu	37	X	107978368	107978368	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chrX:107978368T>A	uc004eoc.2	-	1	1240	c.1207A>T	c.(1207-1209)AGC>TGC	p.S403C		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	403						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						ACAGGCTCGCTGGGTGTTACG	0.622000													10	72					0	0	0.006214	0	0	
DDX26B	203522	broad.mit.edu	37	X	134681170	134681170	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chrX:134681170A>G	uc004eyw.3	+	6	1085	c.722A>G	c.(721-723)GAT>GGT	p.D241G		NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	241											0	Acute lymphoblastic leukemia(192;6.56e-05)					ACAGGACCAGATCCACTTCCT	0.308000													69	50					0	0	0.014410	0	0	
MCF2	4168	broad.mit.edu	37	X	138699694	138699694	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chrX:138699694T>A	uc004fau.2	-	8	1271	c.977A>T	c.(976-978)AAA>ATA	p.K326I	MCF2_uc004fav.2_Missense_Mutation_p.K326I|MCF2_uc011mwl.1_Missense_Mutation_p.K287I|MCF2_uc010nsh.1_Missense_Mutation_p.K326I|MCF2_uc011mwm.1_Missense_Mutation_p.K287I|MCF2_uc011mwn.1_Missense_Mutation_p.K471I|MCF2_uc004faw.2_Missense_Mutation_p.K386I|MCF2_uc011mwo.1_Missense_Mutation_p.K386I	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	326					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TTTATGCATTTTGAAGGTCCT	0.403000													67	31					0	0	0.014410	0	0	
ZMYM1	79830	broad.mit.edu	37	1	35563024	35563025	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr1:35563024_35563025insA	uc001bym.2	+	5	424_425	c.276_277insA	c.(274-279)TGTAAAfs	p.C92fs	ZMYM1_uc001byl.1_Frame_Shift_Ins_p.C92fs|ZMYM1_uc009vus.1_RNA|ZMYM1_uc001byn.2_Frame_Shift_Ins_p.C92fs|ZMYM1_uc010ohu.1_Frame_Shift_Ins_p.C92fs|ZMYM1_uc001byo.2_5'UTR|ZMYM1_uc009vut.2_Frame_Shift_Ins_p.C17fs	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	92_93						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTGCTGGTTGTAAAAAAATTCT	0.436													62	109	---	---	---	---						.
GPATCH8	23131	broad.mit.edu	37	17	42478621	42478622	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr17:42478621_42478622delGC	uc002igw.1	-	8	887_888	c.823_824delGC	c.(823-825)GCTfs	p.A275fs	GPATCH8_uc002igv.1_Frame_Shift_Del_p.A197fs|GPATCH8_uc010wiz.1_Frame_Shift_Del_p.A197fs	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	275						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TAACCCAGGAGCCTGGGCCAGT	0.485													50	95	---	---	---	---						.
MAGI2	9863	broad.mit.edu	37	7	77762312	77762312	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr7:77762312delG	uc003ugx.2	-	18	3351	c.3097delC	c.(3097-3099)CTGfs	p.L1033fs	MAGI2_uc003ugy.2_Frame_Shift_Del_p.L1019fs|MAGI2_uc010ldx.1_Frame_Shift_Del_p.L626fs	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1033	Pro-rich.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGCTGTGCCAGGGGACTCTGC	0.642													74	127	---	---	---	---						.
DAPK1	1612	broad.mit.edu	37	9	90312111	90312111	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HU-A4GP-01A-11D-A25D-08	TCGA-HU-A4GP-11A-21D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c332efb-4379-400e-8210-632c08500d5d	bbe91945-306a-4ca7-96cb-474c26bad844	g.chr9:90312111delA	uc004apc.2	+	22	2741	c.2603delA	c.(2602-2604)GAAfs	p.E868fs	DAPK1_uc004apd.2_Frame_Shift_Del_p.E868fs|DAPK1_uc011ltg.1_Intron|DAPK1_uc011lth.1_Frame_Shift_Del_p.E605fs	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	868					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						CCAGTTGAAGAACCCATAGGT	0.522									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				31	30	---	---	---	---						.
