Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
TPRG1L	127262	broad.mit.edu	37	1	3545105	3545105	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:3545105T>C	uc001akm.2	+	5	838	c.757T>C	c.(757-759)TCC>CCC	p.S253P	TPRG1L_uc009vlj.2_Missense_Mutation_p.S194P	NM_182752	NP_877429	Q5T0D9	TPRGL_HUMAN	tumor protein p63 regulated 1-like	253						cell junction|synaptic vesicle					0	all_cancers(77;0.0119)|all_epithelial(69;0.00481)|Ovarian(185;0.0634)|Lung NSC(156;0.162)|all_lung(157;0.172)	all_epithelial(116;7.37e-22)|all_lung(118;8.23e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.41e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.83e-22)|GBM - Glioblastoma multiforme(42;4.77e-14)|Colorectal(212;1.12e-05)|COAD - Colon adenocarcinoma(227;5.61e-05)|Kidney(185;0.000351)|BRCA - Breast invasive adenocarcinoma(365;0.000688)|KIRC - Kidney renal clear cell carcinoma(229;0.00553)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.201)		GGGACTCATGTCCTTCATTAA	0.557													6	30					0	0	1	0	0	
CHD5	26038	broad.mit.edu	37	1	6228223	6228223	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:6228223C>T	uc001amb.1	-	2	294	c.194G>A	c.(193-195)CGG>CAG	p.R65Q		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	65	Lys-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TTTCTTCTTCCGCTTCCCTTT	0.592													8	173					0	0	1	0	0	
DNAJC11	55735	broad.mit.edu	37	1	6697386	6697386	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:6697386T>C	uc001aof.2	-	14	1502	c.1396A>G	c.(1396-1398)AAT>GAT	p.N466D	DNAJC11_uc010nzt.1_Intron|DNAJC11_uc001aog.2_Missense_Mutation_p.N414D|DNAJC11_uc010nzu.1_Missense_Mutation_p.N376D	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	466					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		TACCAGGCATTGACGATGATG	0.572													20	132					0	0	1	0	0	
DNAJC11	55735	broad.mit.edu	37	1	6714070	6714070	+	Silent	SNP	G	A	A	rs147338908	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:6714070G>A	uc001aof.2	-	5	514	c.408C>T	c.(406-408)ACC>ACT	p.T136T	DNAJC11_uc010nzt.1_Silent_p.T98T|DNAJC11_uc001aog.2_Silent_p.T136T|DNAJC11_uc010nzu.1_Silent_p.T46T	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	136					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		CAAAAAGGTCGGTGGCATCTA	0.458													11	88					0	0	1	0	0	
ENO1	2023	broad.mit.edu	37	1	8926353	8926353	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:8926353G>T	uc001apj.1	-	7	803	c.652C>A	c.(652-654)CTG>ATG	p.L218M	ENO1_uc001api.1_Missense_Mutation_p.L122M|ENO1_uc001apk.1_Missense_Mutation_p.L163M|ENO1_uc001apl.1_Missense_Mutation_p.L218M|ENO1_uc009vmi.1_Missense_Mutation_p.L175M|ENO1_uc009vmj.1_Missense_Mutation_p.L218M|ENO1_uc009vmk.1_Missense_Mutation_p.L92M|ENO1_uc009vml.1_Missense_Mutation_p.L218M	NM_001428	NP_001419	P06733	ENOA_HUMAN	enolase 1	218	Required for repression of c-myc promoter activity.				gluconeogenesis|glycolysis|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|response to virus	phosphopyruvate hydratase complex|plasma membrane|sarcomere	DNA binding|magnesium ion binding|phosphopyruvate hydratase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|kidney(1)|central_nervous_system(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;2.54e-20)|all_lung(118;2.99e-06)|Lung NSC(185;6.25e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;2.42e-07)|COAD - Colon adenocarcinoma(227;2.78e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		TTATTCTCCAGGATGTTGGGA	0.567													8	90					5.18039e-06	5.54903e-06	1	1	0	
VPS13D	55187	broad.mit.edu	37	1	12337845	12337845	+	Silent	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:12337845A>C	uc001atv.2	+	19	4341	c.4200A>C	c.(4198-4200)GGA>GGC	p.G1400G	VPS13D_uc001atw.2_Silent_p.G1400G|VPS13D_uc001atx.2_Silent_p.G588G	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1400					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TGTTGGTGGGACACTTGGGAC	0.443													4	51					0	0	1	0	0	
CLCNKA	1187	broad.mit.edu	37	1	16352735	16352735	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:16352735G>A	uc001axu.2	+	5	571	c.491G>A	c.(490-492)GGC>GAC	p.G164D	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.G164D|CLCNKA_uc010obw.1_Missense_Mutation_p.G121D|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	164	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CTGTTCCTGGGCAAAGTGGTA	0.587													5	65					0	0	1	0	0	
USP48	84196	broad.mit.edu	37	1	22079511	22079511	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:22079511A>G	uc001bfb.2	-	4	752	c.514T>C	c.(514-516)TTG>CTG	p.L172L	USP48_uc010odq.1_Silent_p.L172L|USP48_uc009vqc.2_Silent_p.L172L|USP48_uc001bfc.2_Silent_p.L172L|USP48_uc001bfe.1_Silent_p.L172L|USP48_uc001bff.2_Silent_p.L172L	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	172					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		TCCAGGCCCAAGGCTTTAACA	0.378													16	44					0	0	1	0	0	
UBXN11	91544	broad.mit.edu	37	1	26608997	26608997	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:26608997A>G	uc001blw.2	-	16	1629	c.1356T>C	c.(1354-1356)GAT>GAC	p.D452D	UBXN11_uc001blz.1_Silent_p.D419D|UBXN11_uc001blv.2_Silent_p.D414D|UBXN11_uc001bly.2_Silent_p.D332D|UBXN11_uc001blx.2_Silent_p.D210D|UBXN11_uc001bma.2_Silent_p.D419D|UBXN11_uc001bmb.1_Silent_p.D452D	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	452	UBX.					cytoplasm|cytoskeleton				ovary(1)	1						GCGTGAGTGTATCGTCCTGGT	0.577													13	83					0	0	1	0	0	
OPRD1	4985	broad.mit.edu	37	1	29189495	29189495	+	Silent	SNP	T	C	C	rs142127727		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:29189495T>C	uc001brf.1	+	3	1061	c.819T>C	c.(817-819)TGT>TGC	p.C273C		NM_000911	NP_000902	P41143	OPRD_HUMAN	opioid receptor, delta 1	273	Helical; Name=6; (Potential).				immune response|protein import into nucleus, translocation	integral to plasma membrane	delta-opioid receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;0.000947)|all_lung(284;0.00131)|Renal(390;0.00758)|Breast(348;0.00765)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-07)|COAD - Colon adenocarcinoma(152;7.51e-06)|STAD - Stomach adenocarcinoma(196;0.00306)|BRCA - Breast invasive adenocarcinoma(304;0.0241)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)	Butorphanol(DB00611)|Codeine(DB00318)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Loperamide(DB00836)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pimozide(DB01100)|Propoxyphene(DB00647)	TCGTGGTGTGTTGGGCGCCCA	0.677													5	9					0	0	1	0	0	
TMEM200B	399474	broad.mit.edu	37	1	29447700	29447700	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:29447700C>T	uc001brn.1	-	2	701	c.641G>A	c.(640-642)CGC>CAC	p.R214H		NM_001003682	NP_001003682	Q69YZ2	T200B_HUMAN	transmembrane protein 200B	214	Pro-rich.					integral to membrane					0		Colorectal(325;3.46e-05)|Breast(348;0.00765)|Lung NSC(340;0.0153)|all_lung(284;0.0173)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;7.32e-08)|COAD - Colon adenocarcinoma(152;4.92e-06)|STAD - Stomach adenocarcinoma(196;0.00618)|BRCA - Breast invasive adenocarcinoma(304;0.0501)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.126)		TAACCCCAAGCGAGGATTAGC	0.657													3	27					0	0	1	0	0	
PUM1	9698	broad.mit.edu	37	1	31467969	31467969	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:31467969A>G	uc001bsi.1	-	6	932	c.819T>C	c.(817-819)GGT>GGC	p.G273G	PUM1_uc001bsf.1_5'Flank|PUM1_uc001bsg.1_Silent_p.G85G|PUM1_uc001bsh.1_Silent_p.G273G|PUM1_uc001bsj.1_Silent_p.G273G|PUM1_uc010oga.1_Silent_p.G177G|PUM1_uc001bsk.1_Silent_p.G309G|PUM1_uc010ogb.1_Silent_p.G213G	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	273					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CCATCACATCACCCTCCTCCT	0.418													11	174					0	0	1	0	0	
PUM1	9698	broad.mit.edu	37	1	31532079	31532079	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:31532079G>C	uc001bsi.1	-	2	448	c.335C>G	c.(334-336)ACT>AGT	p.T112S	PUM1_uc001bsh.1_Missense_Mutation_p.T112S|PUM1_uc001bsj.1_Missense_Mutation_p.T112S|PUM1_uc010oga.1_Missense_Mutation_p.T112S|PUM1_uc001bsk.1_Missense_Mutation_p.T148S|PUM1_uc010ogb.1_Missense_Mutation_p.T148S	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	112					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		GTTATCCCCAGTAGGCCATCG	0.433													20	92					0	0	1	0	0	
KPNA6	23633	broad.mit.edu	37	1	32635611	32635611	+	Missense_Mutation	SNP	G	A	A	rs142180334	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:32635611G>A	uc001bug.2	+	13	1461	c.1373G>A	c.(1372-1374)CGC>CAC	p.R458H	KPNA6_uc001buh.2_Missense_Mutation_p.R233H|KPNA6_uc010ogx.1_Missense_Mutation_p.R455H|KPNA6_uc010ogy.1_Missense_Mutation_p.R463H|KPNA6_uc009vtz.2_Missense_Mutation_p.R353H	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	458	ARM 10; atypical.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				GAGGGCAAGCGCAGTGGCTCA	0.532													6	89					0	0	1	0	0	
RNF19B	127544	broad.mit.edu	37	1	33404024	33404024	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:33404024T>C	uc010oho.1	-	8	1719	c.1719A>G	c.(1717-1719)ATA>ATG	p.I573M	RNF19B_uc001bwm.3_Missense_Mutation_p.I572M|RNF19B_uc010ohp.1_Missense_Mutation_p.I572M	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	573						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				AGGAACTGATTATGGAACCGG	0.468													18	95					0	0	1	0	0	
CSMD2	114784	broad.mit.edu	37	1	33990501	33990501	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:33990501G>A	uc001bxn.1	-	65	9974	c.9945C>T	c.(9943-9945)GGC>GGT	p.G3315G	CSMD2_uc001bxm.1_Silent_p.G3459G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3315	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCAGCTCCACGCCACTGTGGT	0.562													9	42					0	0	1	0	0	
GJB5	2709	broad.mit.edu	37	1	35223145	35223145	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:35223145T>C	uc001bxu.2	+	2	314	c.214T>C	c.(214-216)TCC>CCC	p.S72P	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	72	Extracellular (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				CTTCCCTGTGTCCCATGTGCG	0.602													8	46					0	0	1	0	0	
DLGAP3	58512	broad.mit.edu	37	1	35370053	35370053	+	Missense_Mutation	SNP	C	T	T	rs141061512	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:35370053C>T	uc001byc.2	-	1	932	c.932G>A	c.(931-933)CGC>CAC	p.R311H		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	311					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GGCAAGGCAGCGGCCTTCCGA	0.647													13	63					0	0	1	0	0	
DLGAP3	58512	broad.mit.edu	37	1	35370418	35370418	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:35370418C>T	uc001byc.2	-	1	567	c.567G>A	c.(565-567)GCG>GCA	p.A189A		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	189					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GCTTCCCCGGCGCCTCCAGAG	0.657													10	32					0	0	1	0	0	
EIF2C4	192670	broad.mit.edu	37	1	36297173	36297173	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:36297173G>A	uc001bzj.1	+	8	1184	c.994G>A	c.(994-996)GAG>AAG	p.E332K		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	332	PAZ.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				CTTGCCACTCGAGGTAAGTTA	0.343													23	67					0	0	1	0	0	
ZC3H12A	80149	broad.mit.edu	37	1	37947263	37947263	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:37947263C>T	uc001cbb.3	+	4	795	c.645C>T	c.(643-645)CGC>CGT	p.R215R	ZC3H12A_uc001cbc.1_5'UTR	NM_025079	NP_079355	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	215					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CATCACGACGCGTGGGTGGCA	0.587													10	120					0	0	1	0	0	
MACF1	23499	broad.mit.edu	37	1	39798016	39798016	+	Missense_Mutation	SNP	C	T	T	rs150440643	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:39798016C>T	uc010oiu.1	+	1	1207	c.1076C>T	c.(1075-1077)TCG>TTG	p.S359L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1924					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AACTTAAAATCGATTTGTATA	0.428													10	68					0	0	1	0	0	
PABPC4	8761	broad.mit.edu	37	1	40030189	40030189	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:40030189T>C	uc010oiv.1	-	10	2257	c.1359A>G	c.(1357-1359)ATA>ATG	p.I453M	PABPC4_uc001cdl.2_Missense_Mutation_p.I453M|PABPC4_uc001cdm.2_Missense_Mutation_p.I453M	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	453					blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CAGACTGGCGTATAGCACTTG	0.547													9	94					0	0	1	0	0	
FAF1	11124	broad.mit.edu	37	1	50956312	50956312	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:50956312G>A	uc009vyx.1	-	18	1664	c.1601C>T	c.(1600-1602)GCA>GTA	p.A534V	FAF1_uc009vyw.1_RNA|FAF1_uc001cse.1_Missense_Mutation_p.A534V|FAF1_uc010onc.1_Missense_Mutation_p.A292V	NM_007051	NP_008982	Q9UNN5	FAF1_HUMAN	FAS-associated factor 1	534					apoptosis|cytoplasmic sequestering of NF-kappaB|positive regulation of apoptosis|positive regulation of protein complex assembly|proteasomal ubiquitin-dependent protein catabolic process|regulation of protein catabolic process	CD95 death-inducing signaling complex|cytosol|perinuclear region of cytoplasm	heat shock protein binding|NF-kappaB binding|protein kinase binding|protein kinase regulator activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(3;3.18e-11)|all cancers(3;0.00526)		AAACTGTTCTGCCATCTCTCT	0.348													26	132					0	0	1	0	0	
CDKN2C	1031	broad.mit.edu	37	1	51439924	51439924	+	Silent	SNP	A	G	G	rs66920231		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:51439924A>G	uc001csf.2	+	3	1705	c.489A>G	c.(487-489)GGA>GGG	p.G163G	CDKN2C_uc001csg.2_Silent_p.G163G	NM_001262	NP_001253	P42773	CDN2C_HUMAN	cyclin-dependent kinase inhibitor 2C	163					cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|protein kinase binding	p.0?(4)|p.?(1)		central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(5)|ovary(2)|thyroid(1)|lung(1)|kidney(1)	17				GBM - Glioblastoma multiforme(3;3.61e-13)|all cancers(3;0.00151)		GGGCTGGGGGAGCCACAAATC	0.507			D		glioma|MM				Multiple_Endocrine_Neoplasia_type_1				5	52					0	0	1	0	0	
DMRTB1	63948	broad.mit.edu	37	1	53930431	53930431	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:53930431C>T	uc001cvq.1	+	3	927	c.872C>T	c.(871-873)GCG>GTG	p.A291V		NM_033067	NP_149056	Q96MA1	DMRTB_HUMAN	DMRT-like family B with proline-rich C-terminal,	291	Pro-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TACCTCTCTGCGCTCCACTTC	0.517													12	56					0	0	1	0	0	
CYP2J2	1573	broad.mit.edu	37	1	60370559	60370559	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:60370559C>A	uc001czq.2	-	7	1180	c.1175G>T	c.(1174-1176)GGG>GTG	p.G392V		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	392					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					CAGGTGGTACCCAGCCAAAGT	0.473													10	40					0.00621372	0.00638487	1	1	0	
RAVER2	55225	broad.mit.edu	37	1	65280486	65280486	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:65280486G>A	uc001dbs.1	+	11	1931	c.1853G>A	c.(1852-1854)TGC>TAC	p.C618Y	RAVER2_uc001dbt.1_Missense_Mutation_p.C510Y|RAVER2_uc010opb.1_Missense_Mutation_p.C343Y	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	631						cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						TTGGAAAAGTGCATTGCTTAT	0.403													7	53					0	0	1	0	0	
JAK1	3716	broad.mit.edu	37	1	65307255	65307255	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:65307255C>T	uc001dbu.1	-	18	2682	c.2433G>A	c.(2431-2433)AGG>AGA	p.R811R	JAK1_uc009wam.1_Silent_p.R799R|JAK1_uc009wal.1_5'UTR	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	811	Protein kinase 1.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GTGTCACTGGCCTGCACCGGC	0.512			Mis		ALL								14	75					0	0	1	0	0	
C1orf173	127254	broad.mit.edu	37	1	75037669	75037669	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:75037669T>A	uc001dgg.2	-	14	3944	c.3725A>T	c.(3724-3726)GAG>GTG	p.E1242V		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1242	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GGCTGCTAGCTCCTCTGCCTG	0.622													8	74					0	0	1	0	0	
C1orf173	127254	broad.mit.edu	37	1	75097551	75097551	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:75097551T>G	uc001dgg.2	-	7	884	c.665A>C	c.(664-666)TAT>TCT	p.Y222S	C1orf173_uc001dgi.3_Missense_Mutation_p.Y16S	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	222										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGGAAGTTGATATGAATTCAT	0.403													14	86					0	0	1	0	0	
FUBP1	8880	broad.mit.edu	37	1	78429831	78429831	+	Silent	SNP	G	A	A	rs112997035		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:78429831G>A	uc001dii.2	-	12	1046	c.957C>T	c.(955-957)CCC>CCT	p.P319P	FUBP1_uc001dih.3_RNA|FUBP1_uc010orm.1_Silent_p.P340P	NM_003902	NP_003893	Q96AE4	FUBP1_HUMAN	far upstream element-binding protein	319	KH 3.				transcription from RNA polymerase II promoter	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			central_nervous_system(2)|lung(1)	3						CTATCCTTTCGGGTGTTGTCC	0.353													18	154					0	0	1	0	0	
LRRC8B	23507	broad.mit.edu	37	1	90049599	90049599	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:90049599A>G	uc001dni.2	+	7	1897	c.1390A>G	c.(1390-1392)AAC>GAC	p.N464D	LRRC8B_uc001dnh.2_Missense_Mutation_p.N464D|LRRC8B_uc001dnj.2_Missense_Mutation_p.N464D	NM_001134476	NP_001127948	Q6P9F7	LRC8B_HUMAN	leucine rich repeat containing 8 family, member	464	LRR 1.					integral to membrane				ovary(2)	2		all_lung(203;0.17)		all cancers(265;0.00515)|Epithelial(280;0.0241)		ACAGCTGGTCAACCTCAAGGA	0.483													15	57					0	0	1	0	0	
HFM1	164045	broad.mit.edu	37	1	91784745	91784745	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:91784745G>A	uc001doa.3	-	25	2802	c.2702C>T	c.(2701-2703)GCT>GTT	p.A901V	HFM1_uc009wdb.2_RNA|HFM1_uc010osu.1_Missense_Mutation_p.A580V|HFM1_uc001dob.3_Intron|HFM1_uc010osv.1_Missense_Mutation_p.A585V	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	901	SEC63.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		CTTTTCTTGAGCAGCTACAAA	0.299													3	34					0	0	1	0	0	
AMY2B	280	broad.mit.edu	37	1	104117936	104117936	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:104117936G>T	uc001duq.2	+	8	1586	c.970G>T	c.(970-972)GGA>TGA	p.G324*	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Nonsense_Mutation_p.G324*|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	324					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TGGGGCTGGAGGAGCCTCTAT	0.408													50	256					2.01807e-28	2.28732e-28	1	1	0	
GPR61	83873	broad.mit.edu	37	1	110086505	110086505	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:110086505G>T	uc001dxy.2	+	2	1544	c.861G>T	c.(859-861)GTG>GTT	p.V287V		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	287	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		AAGCAGCAGTGGTTCTCCTGG	0.612													14	75					1.49906e-05	1.59775e-05	1	1	0	
LRIG2	9860	broad.mit.edu	37	1	113655265	113655265	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:113655265C>A	uc001edf.1	+	14	2161	c.1963C>A	c.(1963-1965)CCC>ACC	p.P655T	LRIG2_uc009wgn.1_Missense_Mutation_p.P552T	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	655	Ig-like C2-type 2.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		GCACGTCATGCCCGAGGATGA	0.488													6	91					0.00198382	0.00206567	1	1	0	
VTCN1	79679	broad.mit.edu	37	1	117699342	117699342	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:117699342C>T	uc001ehb.2	-	3	371	c.299G>A	c.(298-300)CGG>CAG	p.R100Q	VTCN1_uc001ehc.2_Missense_Mutation_p.R5Q|VTCN1_uc009whf.1_Intron	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	100	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		CACTGCTGTCCGGCCTCTGAA	0.463													15	55					0	0	1	0	0	
LOC200030	200030	broad.mit.edu	37	1	148341973	148341973	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:148341973A>G	uc001eqf.2	-	5	635	c.600T>C	c.(598-600)CCT>CCC	p.P200P	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_RNA|uc001erd.3_Silent_p.P200P|uc001erc.3_RNA|uc010paj.1_Intron|uc010pau.1_5'UTR|uc010pav.1_Silent_p.P200P|uc010paw.1_Silent_p.P125P	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	200	NBPF 1.					cytoplasm					0						GTGAGTCCTCAGGGACTTTGC	0.507													18	486					0	0	1	0	0	
HIST2H2BF	440689	broad.mit.edu	37	1	149399121	149399121	+	RNA	SNP	G	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:149399121G>C	uc010pbi.1	-	1		c.109C>G						Q5QNW6	H2B2F_HUMAN	Homo sapiens histone cluster 2, H3, pseudogene 2, mRNA (cDNA clone IMAGE:5190019).						nucleosome assembly	nucleosome|nucleus	DNA binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)					CTGCACTTTCGTAACAGCCTT	0.537													4	100					0	0	1	0	0	
C1orf51	148523	broad.mit.edu	37	1	150258895	150258895	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:150258895G>A	uc001euh.2	+	6	823	c.687G>A	c.(685-687)ATG>ATA	p.M229I	C1orf51_uc001eui.2_Missense_Mutation_p.M141I|C1orf51_uc001euj.2_Missense_Mutation_p.M229I	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	229											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATCTCCTATGGAAAAGATGG	0.468													18	128					0	0	1	0	0	
PRPF3	9129	broad.mit.edu	37	1	150300910	150300910	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:150300910G>T	uc001eum.3	+	4	570	c.408G>T	c.(406-408)ATG>ATT	p.M136I	PRPF3_uc009wlo.2_Missense_Mutation_p.M136I|PRPF3_uc009wlp.2_RNA|PRPF3_uc010pca.1_Missense_Mutation_p.M95I|PRPF3_uc010pcb.1_Intron	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog	136					nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		GCCCTGGCATGCTGACTAAGC	0.473													20	172					3.62473e-10	4.00776e-10	1	1	0	
LINGO4	339398	broad.mit.edu	37	1	151774638	151774638	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:151774638C>T	uc001ezf.1	-	2	733	c.543G>A	c.(541-543)AAG>AAA	p.K181K		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	181	Extracellular (Potential).|LRR 6.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GGGTGCTCAACTTGGCTAGCC	0.612													12	74					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152279059	152279059	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:152279059T>G	uc001ezu.1	-	3	8339	c.8303A>C	c.(8302-8304)GAG>GCG	p.E2768A		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2768	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTGCCTGCTCATGGCGGGA	0.587									Ichthyosis				18	620					0	0	1	0	0	
FLG	2312	broad.mit.edu	37	1	152279699	152279699	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:152279699C>A	uc001ezu.1	-	3	7699	c.7663G>T	c.(7663-7665)GAG>TAG	p.E2555*		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2555	Ser-rich.|Filaggrin 15.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGGCCCCTCTGATTGTCCC	0.597									Ichthyosis				49	375					2.43468e-25	2.75588e-25	1	1	0	
LCE2C	353140	broad.mit.edu	37	1	152648653	152648653	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:152648653C>T	uc001fah.2	+	2	217	c.162C>T	c.(160-162)AGC>AGT	p.S54S		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	54	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTCTGGGAGCTGCTGTGGTC	0.562													22	172					0	0	1	0	0	
C1orf77	26097	broad.mit.edu	37	1	153609082	153609082	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:153609082G>A	uc001fcm.1	+	2	330	c.18G>A	c.(16-18)GCG>GCA	p.A6A	C1orf77_uc001fcn.1_Silent_p.A6A|C1orf77_uc001fco.1_5'UTR|S100A13_uc001fcj.2_5'Flank|C1orf77_uc009woi.1_Silent_p.A6A|C1orf77_uc009woj.1_Silent_p.A6A	NM_015607	NP_056422	Q9Y3Y2	CHTOP_HUMAN	small protein rich in arginine and glycine	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	protein binding|RNA binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACAGTCAGCGCCGAAAGTTG	0.423													6	56					0	0	1	0	0	
GATAD2B	57459	broad.mit.edu	37	1	153800775	153800775	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:153800775T>A	uc001fdb.3	-	2	293	c.49A>T	c.(49-51)AGC>TGC	p.S17C		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	17						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGGTCCAAGCTCCGCTTCAAC	0.443													20	143					0	0	1	0	0	
DENND4B	9909	broad.mit.edu	37	1	153914362	153914362	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:153914362G>A	uc001fdd.1	-	6	1439	c.1038C>T	c.(1036-1038)CAC>CAT	p.H346H		NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	346	DENN.									ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGGGTAGGCGGTGGGGGCCTG	0.632													5	92					0	0	1	0	0	
THBS3	7059	broad.mit.edu	37	1	155171231	155171231	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:155171231G>A	uc001fix.2	-	11	1329	c.1306C>T	c.(1306-1308)CGC>TGC	p.R436C	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.R427C|THBS3_uc001fiz.2_Missense_Mutation_p.R436C|THBS3_uc001fiy.2_Translation_Start_Site|THBS3_uc010pfu.1_Missense_Mutation_p.R316C|THBS3_uc010pfv.1_RNA|THBS3_uc001fja.2_RNA	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	436	EGF-like 4.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCACCATTGCGTTCAAAGAGA	0.617													20	110					0	0	1	0	0	
CLK2	1196	broad.mit.edu	37	1	155233108	155233108	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:155233108C>T	uc001fjy.2	-	13	1691	c.1401G>A	c.(1399-1401)CGG>CGA	p.R467R	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjr.2_5'Flank|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Silent_p.R466R|CLK2_uc001fjx.2_Silent_p.R239R|CLK2_uc009wqm.2_Silent_p.R467R	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	467	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCAAGGTCAGCCGCTTAGCTG	0.572								Other_conserved_DNA_damage_response_genes					6	76					0	0	1	0	0	
ASH1L	55870	broad.mit.edu	37	1	155317563	155317563	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:155317563T>C	uc009wqq.2	-	20	8182	c.7702A>G	c.(7702-7704)AGT>GGT	p.S2568G	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.S2563G|MIR555_hsa-mir-555|MI0003561_5'Flank	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2568					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			GAGGTCTCACTGCTGTCTGCC	0.493													9	238					0	0	1	0	0	
C1orf85	112770	broad.mit.edu	37	1	156263836	156263836	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:156263836G>A	uc001foh.2	-	4	784	c.771C>T	c.(769-771)GAC>GAT	p.D257D	C1orf85_uc001fof.3_5'Flank|C1orf85_uc001fog.1_Intron|C1orf85_uc001foi.2_Silent_p.D257D|C1orf85_uc009wrx.2_Silent_p.D190D|C1orf85_uc001foj.2_Silent_p.D171D	NM_144580	NP_653181	Q8WWB7	NCUG1_HUMAN	kidney predominant protein NCU-G1 precursor	257	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter	cytosol|integral to membrane|lysosomal membrane|nucleus	ligand-dependent nuclear receptor activity|protein binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)	2	Hepatocellular(266;0.158)					CATATTCATCGTCGATGGAGT	0.572													23	157					0	0	1	0	0	
CD1A	909	broad.mit.edu	37	1	158224875	158224875	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:158224875G>A	uc001frt.2	+	2	593	c.60G>A	c.(58-60)GGG>GGA	p.G20G		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	20	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	TTGTCGCAGGGCTCAAGGAGC	0.478													4	74					0	0	1	0	0	
OR10K1	391109	broad.mit.edu	37	1	158436275	158436275	+	Silent	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:158436275T>A	uc010pij.1	+	1	924	c.924T>A	c.(922-924)ACT>ACA	p.T308T		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCGGCCAAACTTTCTATCCTC	0.224													7	60					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158592947	158592947	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:158592947T>C	uc001fst.1	-	43	6145	c.5946A>G	c.(5944-5946)CAA>CAG	p.Q1982Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1982	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAAGTCTCTCTTGCTGGAAAC	0.493													68	269					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158617367	158617367	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:158617367A>C	uc001fst.1	-	27	4057	c.3858T>G	c.(3856-3858)AAT>AAG	p.N1286K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1286	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTGGGCCTCATTTAGGCTCT	0.542													22	100					0	0	1	0	0	
SPTA1	6708	broad.mit.edu	37	1	158627418	158627418	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:158627418C>T	uc001fst.1	-	19	2853	c.2654G>A	c.(2653-2655)CGT>CAT	p.R885H		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	885	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGCTCGAGCACGGAGAGACTC	0.468													19	136					0	0	1	0	0	
FCRL6	343413	broad.mit.edu	37	1	159785385	159785385	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:159785385G>A	uc001fud.3	+	10	1281	c.1239G>A	c.(1237-1239)ACG>ACA	p.T413T	FCRL6_uc001fuc.2_3'UTR|FCRL6_uc009wsz.1_3'UTR|FCRL6_uc009wta.2_3'UTR	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	413	Cytoplasmic (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					TTTCATCCACGGAGGTGAATA	0.522													12	70					0	0	1	0	0	
SLAMF1	6504	broad.mit.edu	37	1	160607221	160607221	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:160607221T>C	uc001fwl.3	-	2	521	c.175A>G	c.(175-177)AGC>GGC	p.S59G	SLAMF1_uc010pjk.1_RNA|SLAMF1_uc010pjl.1_RNA|SLAMF1_uc010pjm.1_RNA|SLAMF1_uc001fwm.2_Missense_Mutation_p.S59G	NM_003037	NP_003028	Q13291	SLAF1_HUMAN	signaling lymphocytic activation molecule family	59	Extracellular (Potential).				interspecies interaction between organisms|lymphocyte activation|positive regulation of cell proliferation	integral to membrane	antigen binding|transmembrane receptor activity			ovary(1)|breast(1)	2	all_cancers(52;4.94e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			ATGTGGATGCTTTTGTTCATG	0.473													4	58					0	0	1	0	0	
ADAMTS4	9507	broad.mit.edu	37	1	161163482	161163482	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:161163482G>A	uc001fyt.3	-	6	2111	c.1683C>T	c.(1681-1683)GGC>GGT	p.G561G		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	561	TSP type-1.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GGGTACGGCGGCCCTCACAGT	0.647													11	138					0	0	1	0	0	
DDR2	4921	broad.mit.edu	37	1	162724598	162724598	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:162724598C>T	uc001gcf.2	+	6	835	c.370C>T	c.(370-372)CGG>TGG	p.R124W	DDR2_uc001gcg.2_Missense_Mutation_p.R124W	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	124	Extracellular (Potential).|F5/8 type C.				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CAATTACAGTCGGGATGGCAC	0.522													15	55					0	0	1	0	0	
SCYL3	57147	broad.mit.edu	37	1	169831834	169831834	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:169831834G>A	uc001ggs.2	-	10	1258	c.1060C>T	c.(1060-1062)CGG>TGG	p.R354W	SCYL3_uc010plw.1_5'UTR|SCYL3_uc001ggt.2_Missense_Mutation_p.R354W|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	354	HEAT 3.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGCACCATCCGCACATGCTCT	0.547													19	193					0	0	1	0	0	
TNN	63923	broad.mit.edu	37	1	175087876	175087876	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:175087876A>G	uc001gkl.1	+	11	2679	c.2566A>G	c.(2566-2568)AGG>GGG	p.R856G		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	856	Fibronectin type-III 7.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GACGGGCCTGAGGCCGGGCAT	0.592													7	53					0	0	1	0	0	
XPR1	9213	broad.mit.edu	37	1	180832973	180832973	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:180832973A>G	uc001goi.2	+	12	1823	c.1631A>G	c.(1630-1632)AAC>AGC	p.N544S	XPR1_uc009wxn.2_Missense_Mutation_p.N479S	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	544	EXS.|Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						GCTGGAGAGAACACTTTCCTC	0.398													24	98					0	0	1	0	0	
HMCN1	83872	broad.mit.edu	37	1	186045737	186045737	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:186045737A>G	uc001grq.1	+	54	8697	c.8468A>G	c.(8467-8469)AAA>AGA	p.K2823R		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2823	Ig-like C2-type 26.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TCAAGTGATAAAGTATTGATT	0.418													8	75					0	0	1	0	0	
TROVE2	6738	broad.mit.edu	37	1	193060808	193060808	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:193060808C>T	uc001gsw.2	+	10	1988	c.1571C>T	c.(1570-1572)TCA>TTA	p.S524L	TROVE2_uc009wyp.2_3'UTR|TROVE2_uc009wyq.2_3'UTR|TROVE2_uc001gsy.2_RNA	NM_001042369	NP_001035828	P10155	RO60_HUMAN	TROVE domain family, member 2 isoform 1	Error:Variant_position_missing_in_P10155_after_alignment					transcription from RNA polymerase III promoter	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0						CTAAATAAATCATTTTAGACA	0.323													6	49					0	0	1	0	0	
KCNT2	343450	broad.mit.edu	37	1	196227426	196227426	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:196227426T>C	uc001gtd.1	-	26	3169	c.3109A>G	c.(3109-3111)ACC>GCC	p.T1037A	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.T970A|KCNT2_uc001gtf.1_Missense_Mutation_p.T1013A|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.T541A	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1037	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CGCTGCTGGGTTATTTTTTCA	0.468													20	60					0	0	1	0	0	
F13B	2165	broad.mit.edu	37	1	197032148	197032148	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:197032148A>C	uc001gtt.1	-	2	148	c.104T>G	c.(103-105)ATT>AGT	p.I35S		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	35	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATATTGGGCAATTCTTCCATT	0.318													8	164					0	0	1	0	0	
ARL8A	127829	broad.mit.edu	37	1	202113660	202113660	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:202113660G>A	uc001gxk.1	-	1	207	c.41C>T	c.(40-42)GCC>GTC	p.A14V		NM_138795	NP_620150	Q96BM9	ARL8A_HUMAN	ADP-ribosylation factor-like 8A	14					cell division|chromosome segregation|mitosis|small GTPase mediated signal transduction	late endosome membrane|lysosomal membrane|midbody|spindle midzone	alpha-tubulin binding|beta-tubulin binding|GTP binding|GTPase activity			ovary(2)	2						CCAGAATAGGGCCTTGAACCA	0.667													4	51					0	0	1	0	0	
RABIF	5877	broad.mit.edu	37	1	202850209	202850209	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:202850209T>G	uc001gyl.2	-	2	306	c.269A>C	c.(268-270)AAG>ACG	p.K90T		NM_002871	NP_002862	P47224	MSS4_HUMAN	RAB-interacting factor	90					cellular membrane fusion|protein transport|small GTPase mediated signal transduction		guanyl-nucleotide exchange factor activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			GACCAGAAACTTGATGTTGCC	0.502													5	72					0	0	1	0	0	
NFASC	23114	broad.mit.edu	37	1	204945865	204945865	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:204945865G>A	uc001hbj.2	+	16	2101	c.1773G>A	c.(1771-1773)ACG>ACA	p.T591T	NFASC_uc001hbh.2_Silent_p.T591T|NFASC_uc010pqz.1_Silent_p.T585T|NFASC_uc010pra.1_Silent_p.T602T|NFASC_uc001hbi.2_Silent_p.T602T|NFASC_uc010prb.1_Silent_p.T602T|NFASC_uc010prc.1_Silent_p.T158T|NFASC_uc001hbk.1_Silent_p.T412T	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	591	Extracellular (Potential).|Ig-like C2-type 6.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCAGTTACACGTGTGTCGCCA	0.617													31	125					0	0	1	0	0	
FAIM3	9214	broad.mit.edu	37	1	207087391	207087391	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:207087391A>G	uc001hey.2	-	2	265	c.86T>C	c.(85-87)CTG>CCG	p.L29P	FAIM3_uc010prz.1_Intron|FAIM3_uc010psa.1_5'UTR|FAIM3_uc010psb.1_Missense_Mutation_p.L29P	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	29	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					TGATCCGCCCAGCTCCCCCTC	0.483													18	102					0	0	1	0	0	
PLXNA2	5362	broad.mit.edu	37	1	208315796	208315796	+	Missense_Mutation	SNP	C	T	T	rs147087031		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:208315796C>T	uc001hgz.2	-	4	2142	c.1384G>A	c.(1384-1386)GGT>AGT	p.G462S		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	462	Extracellular (Potential).|Sema.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TGGGGGGGACCGTCGGCCCGA	0.592													25	131					0	0	1	0	0	
KCNH1	3756	broad.mit.edu	37	1	210977394	210977394	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:210977394T>C	uc001hib.2	-	8	1747	c.1577A>G	c.(1576-1578)TAC>TGC	p.Y526C	KCNH1_uc001hic.2_Missense_Mutation_p.Y499C	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	526	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGGCACCTGGTAGAGCTTCAG	0.468													5	46					0	0	1	0	0	
NEK2	4751	broad.mit.edu	37	1	211846962	211846962	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:211846962G>A	uc001hir.1	-	3	564	c.418C>T	c.(418-420)CGG>TGG	p.R140W	NEK2_uc001hiq.1_Missense_Mutation_p.R140W|NEK2_uc001his.3_Missense_Mutation_p.R140W|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	140	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		TTCAGATCCCGATGCAATACG	0.453													13	106					0	0	1	0	0	
CENPF	1063	broad.mit.edu	37	1	214815439	214815439	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:214815439T>C	uc001hkm.2	+	12	3932	c.3758T>C	c.(3757-3759)ATG>ACG	p.M1253T		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		TTGCAAGACATGCAGTCACAA	0.393													16	61					0	0	1	0	0	
KCNK2	3776	broad.mit.edu	37	1	215345501	215345501	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:215345501T>C	uc001hkq.2	+	5	967	c.798T>C	c.(796-798)ACT>ACC	p.T266T	KCNK2_uc001hko.2_Silent_p.T262T|KCNK2_uc009xdm.2_Intron|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.T251T	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	266							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	CTCTAACAACTATTGGATTTG	0.413													8	131					0	0	1	0	0	
ESRRG	2104	broad.mit.edu	37	1	216680288	216680288	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:216680288T>C	uc001hkw.1	-	7	1536	c.1370A>G	c.(1369-1371)AAG>AGG	p.K457R	ESRRG_uc001hky.1_Missense_Mutation_p.K434R|ESRRG_uc009xdp.1_Missense_Mutation_p.K434R|ESRRG_uc001hkz.1_Missense_Mutation_p.K395R|ESRRG_uc010puc.1_Missense_Mutation_p.K434R|ESRRG_uc001hla.1_Missense_Mutation_p.K434R|ESRRG_uc001hlb.1_Missense_Mutation_p.K434R|ESRRG_uc010pud.1_Missense_Mutation_p.K265R|ESRRG_uc001hlc.1_Missense_Mutation_p.K434R|ESRRG_uc001hld.1_Missense_Mutation_p.K434R|ESRRG_uc001hkx.1_Missense_Mutation_p.K469R|ESRRG_uc009xdo.1_Missense_Mutation_p.K434R	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	457					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TAGTCAGACCTTGGCCTCCAA	0.433													7	52					0	0	1	0	0	
SPATA17	128153	broad.mit.edu	37	1	217915421	217915421	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:217915421A>G	uc001hlh.1	+	6	526	c.500A>G	c.(499-501)TAC>TGC	p.Y167C	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Missense_Mutation_p.Y167C	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	167						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		AAGATGCATTACCTCCTCAGC	0.483													9	102					0	0	1	0	0	
C1orf115	79762	broad.mit.edu	37	1	220869994	220869994	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:220869994T>C	uc001hmp.1	+	2	467	c.350T>C	c.(349-351)GTC>GCC	p.V117A		NM_024709	NP_078985	Q9H7X2	CA115_HUMAN	hypothetical protein LOC79762	117	Helical; (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0273)		CGCTACGTGGTCATCGGCCTG	0.527													10	118					0	0	1	0	0	
ABCB10	23456	broad.mit.edu	37	1	229676394	229676394	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:229676394C>T	uc001htp.3	-	5	1205	c.1162G>A	c.(1162-1164)GCA>ACA	p.A388T		NM_012089	NP_036221	Q9NRK6	ABCBA_HUMAN	ATP-binding cassette, sub-family B, member 10	388	Mitochondrial intermembrane (Potential).|Mitochondrial matrix (Potential).|ABC transmembrane type-1.					integral to mitochondrial membrane|mitochondrial inner membrane	ATP binding|oligopeptide-transporting ATPase activity			breast(2)	2	Breast(184;0.143)|Ovarian(103;0.249)	Prostate(94;0.167)				TCTTTCCTTGCTAACTGCATT	0.403													18	79					0	0	1	0	0	
TSNAX	7257	broad.mit.edu	37	1	231700443	231700443	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:231700443G>A	uc001huw.2	+	6	823	c.665G>A	c.(664-666)CGT>CAT	p.R222H	TSNAX-DISC1_uc010pwe.1_Intron|TSNAX-DISC1_uc010pwf.1_Intron|TSNAX-DISC1_uc010pwg.1_Intron|TSNAX-DISC1_uc010pwh.1_Intron|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_Intron|TSNAX-DISC1_uc010pwk.1_Intron|TSNAX-DISC1_uc010pwl.1_Intron	NM_005999	NP_005990	Q99598	TSNAX_HUMAN	translin-associated factor X	222					cell differentiation|multicellular organismal development|spermatogenesis	nucleus|perinuclear region of cytoplasm	protein transporter activity|sequence-specific DNA binding				0		all_cancers(173;0.0395)|Acute lymphoblastic leukemia(190;3.76e-06)|Prostate(94;0.116)				CAGTTTTTACGTCAGGTTTAT	0.438													13	97					0	0	1	0	0	
SIPA1L2	57568	broad.mit.edu	37	1	232561520	232561520	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:232561520G>A	uc001hvg.2	-	16	4603	c.4445C>T	c.(4444-4446)TCG>TTG	p.S1482L	SIPA1L2_uc001hvf.2_Missense_Mutation_p.S556L	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1482					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				GCGGTAAAGCGACCTCCTTGG	0.547													4	33					0	0	1	0	0	
C1orf57	84284	broad.mit.edu	37	1	233092116	233092116	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:233092116G>A	uc001hvj.1	+	3	308	c.221G>A	c.(220-222)CGT>CAT	p.R74H	C1orf57_uc001hvi.2_Missense_Mutation_p.R74H|C1orf57_uc009xft.1_RNA	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	74							ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				CCTGGAAAACGTGAATGCCGA	0.443													7	38					0	0	1	0	0	
SLC35F3	148641	broad.mit.edu	37	1	234452411	234452411	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:234452411A>G	uc001hwa.1	+	4	913	c.685A>G	c.(685-687)AGC>GGC	p.S229G	SLC35F3_uc001hvy.1_Missense_Mutation_p.S298G	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	229					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGGCTTCCACAGCCACTCCGT	0.587													8	225					0	0	1	0	0	
SLC35F3	148641	broad.mit.edu	37	1	234454627	234454627	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:234454627A>G	uc001hwa.1	+	5	1106	c.878A>G	c.(877-879)TAC>TGC	p.Y293C	SLC35F3_uc001hvy.1_Missense_Mutation_p.Y362C	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	293					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			AAAGTGGAATACTGGAGCTCT	0.403													10	153					0	0	1	0	0	
LYST	1130	broad.mit.edu	37	1	235976350	235976350	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:235976350A>G	uc001hxj.2	-	4	379	c.204T>C	c.(202-204)TGT>TGC	p.C68C	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.C68C	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	68					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GTTCTTCTCTACATGTCAATG	0.393									Chediak-Higashi_syndrome				10	51					0	0	1	0	0	
LOC100130331	100130331	broad.mit.edu	37	1	238090751	238090751	+	RNA	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:238090751C>T	uc010pyc.1	+	12		c.2257C>T				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CTCGGCCCAGCGGGAGATCAT	0.607													3	17					0	0	1	0	0	
KMO	8564	broad.mit.edu	37	1	241731935	241731935	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:241731935A>G	uc009xgp.2	+	10	1010	c.945A>G	c.(943-945)CAA>CAG	p.Q315Q	KMO_uc001hyy.2_Silent_p.Q315Q|KMO_uc009xgo.1_Silent_p.Q315Q	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	315					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			TTTTTGGGCAAGGAATGAATG	0.418													4	24					0	0	1	0	0	
EXO1	9156	broad.mit.edu	37	1	242035442	242035442	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:242035442T>C	uc001hzh.2	+	12	1916	c.1376T>C	c.(1375-1377)TTT>TCT	p.F459S	EXO1_uc001hzi.2_Missense_Mutation_p.F459S|EXO1_uc001hzj.2_Missense_Mutation_p.F459S|EXO1_uc009xgq.2_Missense_Mutation_p.F458S	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	459	Interaction with MLH1.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			TCTGAAGTGTTTGTGCCTGAC	0.363								Direct_reversal_of_damage|Editing_and_processing_nucleases					7	62					0	0	1	0	0	
C1orf101	257044	broad.mit.edu	37	1	244715941	244715941	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:244715941G>A	uc001iam.2	+	9	913	c.854G>A	c.(853-855)CGG>CAG	p.R285Q	C1orf101_uc001iak.1_Intron|C1orf101_uc001ial.2_Missense_Mutation_p.R285Q|C1orf101_uc010pym.1_Missense_Mutation_p.R134Q|C1orf101_uc010pyn.1_Missense_Mutation_p.R218Q	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	285	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			GATGAAAGACGGAGTGTGGCT	0.408													12	156					0	0	1	0	0	
AHCTF1	25909	broad.mit.edu	37	1	247050587	247050587	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:247050587T>C	uc001ibu.1	-	19	2405	c.2398A>G	c.(2398-2400)ACT>GCT	p.T800A	AHCTF1_uc001ibv.1_Missense_Mutation_p.T809A|AHCTF1_uc009xgs.1_5'UTR	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	800	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GCAAATACAGTTGGGAAAGAT	0.343													8	218					0	0	1	0	0	
AHCTF1	25909	broad.mit.edu	37	1	247063505	247063505	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:247063505A>G	uc001ibu.1	-	9	1301	c.1294T>C	c.(1294-1296)TCA>CCA	p.S432P	AHCTF1_uc001ibv.1_Missense_Mutation_p.S441P|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	432	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GACTCCAATGACCACAGTGCA	0.358													28	144					0	0	1	0	0	
OR2W5	441932	broad.mit.edu	37	1	247655067	247655067	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:247655067C>A	uc001icz.1	+	1	638	c.638C>A	c.(637-639)CCT>CAT	p.P213H		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	213					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GCCGCTCTCCCTCATCCTCAT	0.567													27	133					7.53681e-25	8.51988e-25	1	1	0	
OR2L8	391190	broad.mit.edu	37	1	248112987	248112987	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr1:248112987C>G	uc001idt.1	+	1	828	c.828C>G	c.(826-828)TTC>TTG	p.F276L	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGGCTGTCTTCTACACCATCC	0.498													5	130					0	0	1	0	0	
PFKFB3	5209	broad.mit.edu	37	10	6255618	6255618	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:6255618G>A	uc001ije.2	+	2	493	c.109G>A	c.(109-111)GTC>ATC	p.V37I	PFKFB3_uc001ijd.2_Missense_Mutation_p.V17I|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Missense_Mutation_p.V51I|PFKFB3_uc001ijf.2_Missense_Mutation_p.V37I	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	37	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						CTCCCCCACCGTCATCGTCAT	0.582													21	190					0	0	1	0	0	
SFMBT2	57713	broad.mit.edu	37	10	7213964	7213964	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:7213964C>T	uc009xio.1	-	19	2399	c.2308G>A	c.(2308-2310)GTG>ATG	p.V770M	SFMBT2_uc001ijn.1_Missense_Mutation_p.V770M|SFMBT2_uc010qay.1_Missense_Mutation_p.V605M	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	770					regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GGCCGGCGCACGGGCTCTGAG	0.761													3	6					0	0	1	0	0	
BEND7	222389	broad.mit.edu	37	10	13542000	13542000	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:13542000G>T	uc001imm.2	-	3	367	c.70C>A	c.(70-72)CGA>AGA	p.R24R	BEND7_uc001imo.3_Silent_p.R24R	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	76							protein binding			ovary(1)|breast(1)	2						TTGCCAACTCGCTGATAGATC	0.483													13	189					2.61681e-11	2.91588e-11	1	1	0	
ITGA8	8516	broad.mit.edu	37	10	15646264	15646264	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:15646264T>G	uc001ioc.1	-	20	2061	c.2061A>C	c.(2059-2061)GAA>GAC	p.E687D	ITGA8_uc010qcb.1_Missense_Mutation_p.E672D	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	687	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTACAAAGAGTTCAGCTTCAT	0.368													13	89					0	0	1	0	0	
C10orf68	79741	broad.mit.edu	37	10	33165293	33165293	+	Missense_Mutation	SNP	G	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:33165293G>C	uc001iwn.3	+	22	2332	c.1859G>C	c.(1858-1860)CGA>CCA	p.R620P	C10orf68_uc001iwl.1_Missense_Mutation_p.R579P|C10orf68_uc001iwm.1_Missense_Mutation_p.R624P|C10orf68_uc010qei.1_Missense_Mutation_p.R596P|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	620										skin(2)|ovary(1)	3						GCTGCTGCCCGAAAATCTGTA	0.303													9	63					0	0	1	0	0	
CREM	1390	broad.mit.edu	37	10	35495831	35495831	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:35495831G>A	uc001iyb.2	+	7	769	c.607G>A	c.(607-609)GGT>AGT	p.G203S	CREM_uc001ixy.2_5'UTR|CREM_uc001ixz.2_5'UTR|CREM_uc001iya.2_Missense_Mutation_p.G152S|CREM_uc001iyc.2_Missense_Mutation_p.G124S|CREM_uc001iyd.2_Missense_Mutation_p.G203S|CREM_uc001iye.2_Missense_Mutation_p.G140S|CREM_uc001iyf.2_Missense_Mutation_p.G173S|CREM_uc001iyg.2_Missense_Mutation_p.G110S|CREM_uc001iyh.2_Missense_Mutation_p.G148S|CREM_uc001iyi.2_Missense_Mutation_p.G85S|CREM_uc001iyj.2_Missense_Mutation_p.G82S|CREM_uc001iyk.2_Missense_Mutation_p.G82S|CREM_uc001iyl.2_Missense_Mutation_p.G24S|CREM_uc001iym.2_Missense_Mutation_p.G24S|CREM_uc001iyn.2_Missense_Mutation_p.G12S|CREM_uc001iyo.2_Missense_Mutation_p.G12S|CREM_uc001iyp.2_Missense_Mutation_p.G6S|CREM_uc001iyq.2_Missense_Mutation_p.G16S|CREM_uc001iyr.2_Missense_Mutation_p.G16S|CREM_uc001iys.2_5'UTR|CREM_uc001iyt.2_5'UTR	NM_181571	NP_853549	Q03060	CREM_HUMAN	cAMP responsive element modulator isoform a	264					cell differentiation|multicellular organismal development|signal transduction|spermatogenesis	nucleus	cAMP response element binding protein binding|protein binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGCTGCCACTGGTGACATGCC	0.433													22	250					0	0	1	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38406457	38406457	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:38406457C>T	uc001izk.2	+	8	1197	c.378C>T	c.(376-378)AGC>AGT	p.S126S	ZNF37A_uc001izl.2_Silent_p.S126S|ZNF37A_uc001izm.2_Silent_p.S126S	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	126						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						ATGGGAACAGCTTCTGGCTGA	0.338													10	128					0	0	1	0	0	
ZNF37A	7587	broad.mit.edu	37	10	38406869	38406869	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:38406869A>G	uc001izk.2	+	8	1609	c.790A>G	c.(790-792)ACA>GCA	p.T264A	ZNF37A_uc001izl.2_Missense_Mutation_p.T264A|ZNF37A_uc001izm.2_Missense_Mutation_p.T264A	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	264	C2H2-type 2; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						ACAACAGAGAACACATACAGG	0.373													12	139					0	0	1	0	0	
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294													5	27					0	0	1	0	0	
CCDC6	8030	broad.mit.edu	37	10	61572399	61572399	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:61572399A>G	uc001jks.3	-	5	1477	c.841T>C	c.(841-843)TTA>CTA	p.L281L		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	281	Potential.					cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		GTACGCTGTAACTGAGCAGCT	0.373													14	93					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61829483	61829483	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:61829483C>T	uc001jky.2	-	37	11348	c.11156G>A	c.(11155-11157)CGC>CAC	p.R3719H	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3719					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TATAGGCGTGCGCAACTTGGG	0.493													26	215					0	0	1	0	0	
ANK3	288	broad.mit.edu	37	10	61833623	61833623	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:61833623T>C	uc001jky.2	-	37	7208	c.7016A>G	c.(7015-7017)CAA>CGA	p.Q2339R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2339					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGGCTCAGCTTGGTTACCTTT	0.413													7	142					0	0	1	0	0	
TMEM26	219623	broad.mit.edu	37	10	63170263	63170263	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:63170263T>C	uc001jlo.2	-	6	1293	c.924A>G	c.(922-924)GCA>GCG	p.A308A	TMEM26_uc010qij.1_RNA|TMEM26_uc001jlp.1_RNA	NM_178505	NP_848600	Q6ZUK4	TMM26_HUMAN	transmembrane protein 26	308						integral to membrane					0	Prostate(12;0.0112)					GGACTGCCAATGCCAGCACCA	0.537													17	86					0	0	1	0	0	
MYPN	84665	broad.mit.edu	37	10	69948695	69948695	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:69948695A>G	uc001jnm.3	+	14	2922	c.2737A>G	c.(2737-2739)ATG>GTG	p.M913V	MYPN_uc001jnn.3_Missense_Mutation_p.M638V|MYPN_uc001jno.3_Missense_Mutation_p.M913V|MYPN_uc009xpt.2_Missense_Mutation_p.M913V|MYPN_uc010qit.1_Missense_Mutation_p.M619V|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	913						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GCAGAGGCTGATGAATGAAAT	0.403													3	34					0	0	1	0	0	
MYPN	84665	broad.mit.edu	37	10	69957155	69957155	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:69957155C>T	uc001jnm.3	+	17	3390	c.3205C>T	c.(3205-3207)CGC>TGC	p.R1069C	MYPN_uc001jnn.3_Missense_Mutation_p.R794C|MYPN_uc001jno.3_Missense_Mutation_p.R1069C|MYPN_uc009xpt.2_Missense_Mutation_p.R1069C|MYPN_uc010qit.1_Missense_Mutation_p.R775C|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	1069	Interaction with ACTN.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CCTACAGGAACGCTTTTTCCG	0.473													17	137					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70406188	70406188	+	Silent	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:70406188A>T	uc001jok.3	+	4	4207	c.3702A>T	c.(3700-3702)ACA>ACT	p.T1234T		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1234					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AACCCAAAACAGTATTTCCAC	0.393													9	68					0	0	1	0	0	
TET1	80312	broad.mit.edu	37	10	70406221	70406221	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:70406221G>T	uc001jok.3	+	4	4240	c.3735G>T	c.(3733-3735)CAG>CAT	p.Q1245H		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1245					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TAAAATTACAGAGATATCCTG	0.408													12	73					1.49906e-05	1.59775e-05	1	1	0	
SPOCK2	9806	broad.mit.edu	37	10	73823934	73823934	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:73823934A>G	uc001jso.1	-	9	1436	c.991_splice	c.e9+1	p.G331_splice	SPOCK2_uc001jsp.2_Splice_Site_p.G331_splice	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains						extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						CTGGCCCCTCACCTGGCTTCT	0.647													4	20					0	0	1	0	0	
USP54	159195	broad.mit.edu	37	10	75276635	75276635	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:75276635C>G	uc001juo.2	-	18	3566	c.3549G>C	c.(3547-3549)TGG>TGC	p.W1183C	USP54_uc010qkk.1_Missense_Mutation_p.W365C|USP54_uc001juk.2_Missense_Mutation_p.W271C|USP54_uc001jul.2_Missense_Mutation_p.W271C|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1183					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					GTTGCTTTGCCCATGGCCAGT	0.488													14	240					0	0	1	0	0	
SFTPA2	729238	broad.mit.edu	37	10	81317025	81317025	+	Silent	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:81317025T>G	uc001kal.3	-	6	784	c.687A>C	c.(685-687)ACA>ACC	p.T229T	SFTPA2_uc001kan.3_Silent_p.T229T	NM_006926	NP_008857	Q8IWL1	SFPA2_HUMAN	RecName: Full=Pulmonary surfactant-associated protein A2;          Short=SP-A2;          Short=SP-A;          Short=PSP-A;          Short=PSPA; AltName: Full=Alveolar proteinosis protein; AltName: Full=35 kDa pulmonary surfactant-associated protein; Flags: Precursor;	229	C-type lectin.				cell junction assembly|respiratory gaseous exchange	collagen|extracellular space	sugar binding				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			ACTGCCCATCTGTGTACATCT	0.557									Pulmonary_Fibrosis_Idiopathic				35	124					0	0	1	0	0	
PAPSS2	9060	broad.mit.edu	37	10	89468995	89468995	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:89468995C>A	uc001kex.2	+	2	333	c.70C>A	c.(70-72)CAT>AAT	p.H24N	PAPSS2_uc001kew.2_Missense_Mutation_p.H24N|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	24	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		TCAGGCCCACCATGTGAGCAG	0.403													10	100					2.80697e-09	3.08767e-09	1	1	0	
BTAF1	9044	broad.mit.edu	37	10	93770836	93770836	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:93770836G>T	uc001khr.2	+	29	4208	c.4110G>T	c.(4108-4110)CAG>CAT	p.Q1370H		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1370	Helicase ATP-binding.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AAAGGTTACAGCACCAAGTAA	0.289													12	64					7.93312e-07	8.51892e-07	1	1	0	
SORBS1	10580	broad.mit.edu	37	10	97194454	97194454	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:97194454C>T	uc001kkp.2	-	3	142	c.97G>A	c.(97-99)GCA>ACA	p.A33T	SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Missense_Mutation_p.A21T|SORBS1_uc001kko.2_Missense_Mutation_p.A33T|SORBS1_uc001kkq.2_Missense_Mutation_p.A33T|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Missense_Mutation_p.A33T|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Missense_Mutation_p.A33T|SORBS1_uc010qoe.1_Intron|SORBS1_uc010qof.1_Intron|SORBS1_uc001kkx.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	33					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		ATAGAGCGTGCGCGTAAAGGG	0.478													7	62					0	0	1	0	0	
ENTPD1	953	broad.mit.edu	37	10	97605200	97605200	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:97605200A>C	uc001klh.3	+	6	984	c.660A>C	c.(658-660)CAA>CAC	p.Q220H	ENTPD1_uc001kle.1_Missense_Mutation_p.Q227H|ENTPD1_uc001kli.3_Missense_Mutation_p.Q227H|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.Q232H|ENTPD1_uc010qok.1_Missense_Mutation_p.Q112H|ENTPD1_uc010qol.1_Missense_Mutation_p.Q112H|ENTPD1_uc010qom.1_Missense_Mutation_p.Q220H|ENTPD1_uc010qon.1_Missense_Mutation_p.Q82H|ENTPD1_uc009xva.2_Missense_Mutation_p.Q82H|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	220	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		CCTCTACACAAGTCACTTTTG	0.448													13	184					0	0	1	0	0	
LOXL4	84171	broad.mit.edu	37	10	100017803	100017803	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:100017803A>G	uc001kpa.1	-	7	1191	c.1040T>C	c.(1039-1041)GTC>GCC	p.V347A		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	347	SRCR 3.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		ACGACACACGACACTGGCAGA	0.667													6	110					0	0	1	0	0	
NOLC1	9221	broad.mit.edu	37	10	103917033	103917033	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:103917033G>T	uc001kuo.2	+	3	499	c.264G>T	c.(262-264)GAG>GAT	p.E88D	NOLC1_uc001kup.2_Missense_Mutation_p.E88D|NOLC1_uc001kuq.2_Missense_Mutation_p.E89D|NOLC1_uc009xxb.1_Intron|NOLC1_uc001kur.2_Intron	NM_004741	NP_004732	Q14978	NOLC1_HUMAN	nucleolar and coiled-body phosphoprotein 1	88	11 X 12 AA approximate repeats of an acidic serine cluster.|Acidic serine cluster 1.				mitosis|rRNA processing	cytoplasm|nucleolus	ATP binding|GTP binding|protein binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;5.19e-08)|all cancers(201;9.43e-07)		GTGACAGTGAGGACAGCAGCG	0.532													3	41					6.4e-05	6.74743e-05	1	1	0	
SFXN2	118980	broad.mit.edu	37	10	104493348	104493348	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:104493348T>C	uc001kwb.2	+	10	975	c.809T>C	c.(808-810)CTG>CCG	p.L270P	SFXN2_uc001kwc.2_RNA|SFXN2_uc001kwd.2_RNA	NM_178858	NP_849189	Q96NB2	SFXN2_HUMAN	sideroflexin 2	270	Helical; (Potential).				iron ion homeostasis	integral to membrane	cation transmembrane transporter activity				0		Colorectal(252;0.207)		Epithelial(162;4.53e-09)|all cancers(201;1.2e-07)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CAGGTCATGCTGAGCGGGTGC	0.463													18	85					0	0	1	0	0	
INA	9118	broad.mit.edu	37	10	105037208	105037208	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:105037208G>A	uc001kws.2	+	1	289	c.240G>A	c.(238-240)GCG>GCA	p.A80A	uc001kwr.2_5'Flank|INA_uc009xxj.2_Silent_p.A80A	NM_032727	NP_116116	Q16352	AINX_HUMAN	internexin neuronal intermediate filament	80	Head.				cell differentiation|nervous system development	neurofilament	structural constituent of cytoskeleton			ovary(1)|breast(1)	2				Epithelial(162;3.45e-09)|all cancers(201;9.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		TGAGCCAGGCGGCGGCGCGCA	0.692													9	36					0	0	1	0	0	
BAG3	9531	broad.mit.edu	37	10	121436122	121436122	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:121436122C>A	uc001lem.2	+	4	1362	c.1056C>A	c.(1054-1056)TCC>TCA	p.S352S	BAG3_uc001lel.2_Silent_p.S351S	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	352					anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		AACCTGTTTCCCAGAAGCCCC	0.552													20	154					1.28384e-07	1.38907e-07	1	1	0	
WDR11	55717	broad.mit.edu	37	10	122624600	122624600	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:122624600A>G	uc010qtf.1	+	6	993	c.755A>G	c.(754-756)TAC>TGC	p.Y252C	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_Translation_Start_Site	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	252						integral to membrane					0						CAGTTGGCATACCTGCCTTCA	0.378													13	101					0	0	1	0	0	
DMBT1	1755	broad.mit.edu	37	10	124402699	124402699	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:124402699C>T	uc001lgk.1	+	53	7133	c.7027C>T	c.(7027-7029)CGG>TGG	p.R2343W	DMBT1_uc001lgl.1_Missense_Mutation_p.R2333W|DMBT1_uc001lgm.1_Missense_Mutation_p.R1715W|DMBT1_uc009xzz.1_Missense_Mutation_p.R2342W|DMBT1_uc010qtx.1_Missense_Mutation_p.R1063W|DMBT1_uc009yab.1_Missense_Mutation_p.R1046W|DMBT1_uc009yac.1_Missense_Mutation_p.R637W	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2343	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCCCGCTTCCGGTTCAGGGC	0.587													6	109					0	0	1	0	0	
VENTX	27287	broad.mit.edu	37	10	135053206	135053206	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr10:135053206C>T	uc010quy.1	+	2	279	c.268C>T	c.(268-270)CGG>TGG	p.R90W		NM_014468	NP_055283	O95231	VENTX_HUMAN	VENT homeobox	90					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(35;4.15e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.8e-06)|Epithelial(32;9.31e-06)|all cancers(32;1.19e-05)		AAATACCTTGCGGGCCCCCCG	0.612													9	41					0	0	1	0	0	
RIC8A	60626	broad.mit.edu	37	11	214246	214246	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:214246C>T	uc001log.2	+	10	1817	c.1492C>T	c.(1492-1494)CCA>TCA	p.P498S	RIC8A_uc001lof.2_Missense_Mutation_p.P504S|RIC8A_uc001loh.2_Missense_Mutation_p.P491S	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	498						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		AGTCATCCAGCCAATGGGGAT	0.547													4	28					0	0	1	0	0	
LRDD	55367	broad.mit.edu	37	11	800377	800377	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:800377C>T	uc001lro.1	-	13	2258	c.2116G>A	c.(2116-2118)GTG>ATG	p.V706M	SLC25A22_uc009yci.2_5'Flank|SLC25A22_uc001lrj.2_5'Flank|LRDD_uc009yck.1_Intron|LRDD_uc001lrk.1_Intron|LRDD_uc001lrl.1_Missense_Mutation_p.V549M|LRDD_uc001lrm.1_Missense_Mutation_p.V393M|LRDD_uc001lrn.1_Missense_Mutation_p.V549M|LRDD_uc001lrp.1_Intron	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	706					apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTGGTGGTCACGTATACCTCC	0.642													11	56					0	0	1	0	0	
MUC5B	727897	broad.mit.edu	37	11	1283556	1283556	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:1283556G>T	uc009ycr.1	+	72	18440	c.18314G>T	c.(18313-18315)GGG>GTG	p.G6105V		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:Variant_position_missing_in_Q9HC84_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GAAGCCTCTGGGAAGGCCAGG	0.677													5	38					0.184627	0.184627	1	1	0	
BRSK2	9024	broad.mit.edu	37	11	1477636	1477636	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:1477636C>A	uc001lti.2	+	17	2113	c.1727C>A	c.(1726-1728)GCC>GAC	p.A576D	BRSK2_uc009ycv.1_Missense_Mutation_p.A598D|BRSK2_uc001lth.1_Missense_Mutation_p.A576D|BRSK2_uc001ltj.2_Missense_Mutation_p.A576D|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Missense_Mutation_p.A576D|BRSK2_uc001ltm.2_Missense_Mutation_p.A622D|BRSK2_uc001ltn.2_RNA|BRSK2_uc010qwx.1_RNA|BRSK2_uc009ycw.2_Missense_Mutation_p.A72D	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	576					establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		GAGTACAAGGCCACGGGGGGG	0.622													5	16					1.024e-07	1.11074e-07	1	1	0	
OR52D1	390066	broad.mit.edu	37	11	5510028	5510028	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:5510028C>T	uc010qzg.1	+	1	92	c.92C>T	c.(91-93)GCC>GTC	p.A31V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCTGGATTGCCATCCCTTTC	0.502													18	93					0	0	1	0	0	
OR56A3	390083	broad.mit.edu	37	11	5969479	5969479	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:5969479A>T	uc010qzt.1	+	1	903	c.903A>T	c.(901-903)CAA>CAT	p.Q301H		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGAGAACCCAAGAAATTAAGC	0.418													45	60					0	0	1	0	0	
OR56A4	120793	broad.mit.edu	37	11	6023669	6023669	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:6023669A>G	uc010qzv.1	-	1	710	c.710T>C	c.(709-711)CTG>CCG	p.L237P		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGACACAGACAGGTTACTGCA	0.458													10	45					0	0	1	0	0	
DCHS1	8642	broad.mit.edu	37	11	6662259	6662259	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:6662259G>A	uc001mem.1	-	2	996	c.586C>T	c.(586-588)CGC>TGC	p.R196C		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	196	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGACCGGGGCGTGTCTCCAGC	0.602													6	85					0	0	1	0	0	
GALNTL4	374378	broad.mit.edu	37	11	11400810	11400810	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:11400810C>A	uc001mjo.2	-	4	1018	c.597G>T	c.(595-597)GAG>GAT	p.E199D		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	199	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		CCTTCAGTTCCTCTGTCAGGG	0.532													5	56					0.014758	0.0150206	1	1	0	
MICAL2	9645	broad.mit.edu	37	11	12225943	12225943	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:12225943T>C	uc001mjz.2	+	4	699	c.411T>C	c.(409-411)CTT>CTC	p.L137L	MICAL2_uc010rch.1_Silent_p.L137L|MICAL2_uc001mjy.2_Silent_p.L137L|MICAL2_uc001mka.2_Silent_p.L137L|MICAL2_uc010rci.1_Silent_p.L137L|MICAL2_uc001mkb.2_Silent_p.L137L|MICAL2_uc001mkc.2_Silent_p.L137L	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	137						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		TCCATGACCTTCGTGGCCTGG	0.547													9	91					0	0	1	0	0	
PDE3B	5140	broad.mit.edu	37	11	14793532	14793532	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:14793532A>T	uc001mln.2	+	2	1381	c.1028A>T	c.(1027-1029)CAA>CTA	p.Q343L	PDE3B_uc001mlm.2_Missense_Mutation_p.Q343L|PDE3B_uc010rcr.1_Missense_Mutation_p.Q343L	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	343					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						CCTCATTATCAAGTAAGTATA	0.269													6	41					0	0	1	0	0	
SLC6A5	9152	broad.mit.edu	37	11	20628577	20628577	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:20628577T>A	uc001mqd.2	+	4	977	c.704T>A	c.(703-705)ATG>AAG	p.M235K	SLC6A5_uc009yic.2_5'UTR	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	235	Helical; Name=2; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	CCTTACCTGATGATGCTGGCT	0.577													19	55					0	0	1	0	0	
NELL1	4745	broad.mit.edu	37	11	21594807	21594807	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:21594807G>A	uc001mqe.2	+	19	2387	c.2234G>A	c.(2233-2235)TGT>TAT	p.C745Y	NELL1_uc001mqf.2_Missense_Mutation_p.C698Y|NELL1_uc009yid.2_Missense_Mutation_p.C773Y|NELL1_uc010rdo.1_Missense_Mutation_p.C688Y|NELL1_uc010rdp.1_Missense_Mutation_p.C458Y|NELL1_uc001mqh.2_Missense_Mutation_p.C290Y	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	745	VWFC 4.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						GAAGGGGAATGTTGTCCCCGC	0.483													17	67					0	0	1	0	0	
TCP11L1	55346	broad.mit.edu	37	11	33083248	33083248	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:33083248C>T	uc001mud.2	+	7	1348	c.948C>T	c.(946-948)GAC>GAT	p.D316D	TCP11L1_uc009yju.2_Silent_p.D131D|TCP11L1_uc010rei.1_Silent_p.D316D|TCP11L1_uc001mue.2_Silent_p.D316D|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	316											0						TGAAGTGGGACCACCTCCAGA	0.512													4	29					0	0	1	0	0	
CHST1	8534	broad.mit.edu	37	11	45672305	45672305	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:45672305G>T	uc001mys.1	-	4	840	c.169C>A	c.(169-171)CTC>ATC	p.L57I		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	57	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		TTGCGGGAGAGGTTGTAGGCG	0.652													13	64					3.27435e-08	3.5607e-08	1	1	0	
CKAP5	9793	broad.mit.edu	37	11	46812089	46812089	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:46812089G>A	uc001ndi.1	-	14	1805	c.1695C>T	c.(1693-1695)GGC>GGT	p.G565G	CKAP5_uc009ylg.1_Silent_p.G451G|CKAP5_uc001ndj.1_Silent_p.G565G	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	565					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TATTCCCTGCGCCTCCTGGTG	0.423													11	61					0	0	1	0	0	
OR4C13	283092	broad.mit.edu	37	11	49974000	49974000	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:49974000A>G	uc010rhz.1	+	1	26	c.26A>G	c.(25-27)GAG>GGG	p.E9G		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AATGTGACAGAGTTTATTCTA	0.299													22	49					0	0	1	0	0	
OR4C12	283093	broad.mit.edu	37	11	50003299	50003299	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:50003299A>C	uc010ria.1	-	1	739	c.739T>G	c.(739-741)TTA>GTA	p.L247V		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ACAAAGAATAAGACAACTACT	0.413													12	30					0	0	1	0	0	
OR8K1	390157	broad.mit.edu	37	11	56113902	56113902	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:56113902G>A	uc010rjg.1	+	1	388	c.388G>A	c.(388-390)GTA>ATA	p.V130I		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	130	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGATCGCTACGTAGCCATCTG	0.413										HNSCC(65;0.19)			9	157					0	0	1	0	0	
OR5R1	219479	broad.mit.edu	37	11	56184755	56184755	+	Missense_Mutation	SNP	T	A	A	rs141438285		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:56184755T>A	uc010rji.1	-	1	954	c.954A>T	c.(952-954)TTA>TTT	p.L318F		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	318	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTCTTATTTTTAAAAATGTTA	0.294													4	19					0	0	1	0	0	
OR5B2	390190	broad.mit.edu	37	11	58190401	58190401	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:58190401A>T	uc010rkg.1	-	1	334	c.334T>A	c.(334-336)TTG>ATG	p.L112M		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GAGGCCAACAAGTAATTTTCC	0.527													33	71					0	0	1	0	0	
DAGLA	747	broad.mit.edu	37	11	61490943	61490943	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:61490943G>A	uc001nsa.2	+	5	558	c.447G>A	c.(445-447)GTG>GTA	p.V149V		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	149	Helical; (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		TCCTCAGTGTGTGCATCACTG	0.612													19	116					0	0	1	0	0	
TUT1	64852	broad.mit.edu	37	11	62358925	62358925	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:62358925C>T	uc001nto.2	-	1	185	c.147G>A	c.(145-147)CTG>CTA	p.L49L		NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	11					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CCCCACGCGGCAGCGATTCGA	0.612													12	57					0	0	1	0	0	
C11orf68	83638	broad.mit.edu	37	11	65685438	65685438	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:65685438C>A	uc001ogi.2	-	2	403	c.374G>T	c.(373-375)GGG>GTG	p.G125V	C11orf68_uc009yqv.2_Missense_Mutation_p.G124V|DRAP1_uc001ogj.1_5'Flank	NM_001135635	NP_001129107	Q9H3H3	CK068_HUMAN	basophilic leukemia expressed protein BLES03	83											0				READ - Rectum adenocarcinoma(159;0.166)		GTAGCCCTGCCCATACACTGC	0.657													12	40					1.61879e-10	1.7968e-10	1	1	0	
RBM4	5936	broad.mit.edu	37	11	66407488	66407488	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:66407488T>C	uc009yrj.2	+	2	794	c.306T>C	c.(304-306)GGT>GGC	p.G102G	RBM4_uc009yrk.2_Intron|RBM4_uc001oiv.2_Silent_p.G102G|RBM4_uc001oiw.1_Silent_p.G102G|RBM4_uc001oix.1_Silent_p.G102G|RBM4_uc010rpj.1_Silent_p.G102G|RBM4_uc001oiy.1_Silent_p.G102G|RBM4_uc001oiz.1_Silent_p.G102G	NM_002896	NP_002887	Q9BWF3	RBM4_HUMAN	RNA binding motif protein 4	102	RRM 2.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|negative regulation of translation in response to stress|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|positive regulation of muscle cell differentiation|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of nucleocytoplasmic transport|RNA splicing|stress-activated MAPK cascade	nuclear speck|nucleolus|stress granule	miRNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|zinc ion binding			ovary(1)	1				Lung(977;0.0112)|LUSC - Lung squamous cell carcinoma(976;0.0266)		AGGAGTATGGTCCGGTCATCG	0.502													18	163					0	0	1	0	0	
KDM2A	22992	broad.mit.edu	37	11	67018182	67018182	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:67018182A>G	uc001ojw.2	+	17	3545	c.2681A>G	c.(2680-2682)CAG>CGG	p.Q894R	KDM2A_uc001ojx.2_Intron|KDM2A_uc001ojy.2_Missense_Mutation_p.Q588R|KDM2A_uc010rpn.1_Missense_Mutation_p.Q455R|KDM2A_uc001ojz.1_Missense_Mutation_p.Q352R|KDM2A_uc001oka.2_5'Flank	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	894	F-box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						AGCTGGATGCAGCGGGAGGTC	0.512													5	85					0	0	1	0	0	
SSH3	54961	broad.mit.edu	37	11	67076921	67076921	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:67076921G>A	uc001okj.2	+	11	1293	c.1115G>A	c.(1114-1116)CGC>CAC	p.R372H	SSH3_uc001okk.2_RNA|SSH3_uc001okl.2_Missense_Mutation_p.R226H	NM_017857	NP_060327	Q8TE77	SSH3_HUMAN	slingshot homolog 3	372	Tyrosine-protein phosphatase.				regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton|nucleus	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			TACCCTGAGCGCTTCACCTAC	0.612													6	92					0	0	1	0	0	
PITPNM1	9600	broad.mit.edu	37	11	67270120	67270120	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:67270120C>A	uc001olx.2	-	2	337	c.148G>T	c.(148-150)GAT>TAT	p.D50Y	PITPNM1_uc001oly.2_Missense_Mutation_p.D50Y|PITPNM1_uc001olz.2_Missense_Mutation_p.D50Y	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	50					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						CCGGGCCCATCCGTGTAGGGC	0.662													10	94					1.08611e-07	1.17662e-07	1	1	0	
PITPNM1	9600	broad.mit.edu	37	11	67270134	67270134	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:67270134T>G	uc001olx.2	-	2	323	c.134A>C	c.(133-135)AAC>ACC	p.N45T	PITPNM1_uc001oly.2_Missense_Mutation_p.N45T|PITPNM1_uc001olz.2_Missense_Mutation_p.N45T	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	45					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GTAGGGCCGGTTGGCCAGGAT	0.657													6	94					0	0	1	0	0	
CTTN	2017	broad.mit.edu	37	11	70253656	70253656	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:70253656T>C	uc001opv.3	+	4	326	c.120T>C	c.(118-120)GGT>GGC	p.G40G	CTTN_uc001opu.2_Silent_p.G40G|CTTN_uc001opw.3_Silent_p.G40G	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	40						cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		AAAGATGGGGTGCCAAGACGG	0.572													20	104					0	0	1	0	0	
RNF169	254225	broad.mit.edu	37	11	74546898	74546898	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:74546898G>A	uc001ovl.3	+	6	1263	c.1250G>A	c.(1249-1251)AGC>AAC	p.S417N	XRRA1_uc001ovm.2_Intron	NM_001098638	NP_001092108	Q8NCN4	RN169_HUMAN	ring finger protein 169	417							zinc ion binding			ovary(1)	1						CTAAACAGAAGCCTGCAGAAG	0.498													8	120					0	0	1	0	0	
NEU3	10825	broad.mit.edu	37	11	74716711	74716711	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:74716711A>G	uc001ovw.2	+	3	716	c.560A>G	c.(559-561)AAG>AGG	p.K187R	NEU3_uc001ovv.2_Missense_Mutation_p.K177R|NEU3_uc010rrl.1_Missense_Mutation_p.K78R	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	187										ovary(2)	2						TCAGAGCTGAAGCACTGGGCC	0.552													13	114					0	0	1	0	0	
POU2AF1	5450	broad.mit.edu	37	11	111229625	111229625	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:111229625G>A	uc001plg.3	-	2	290	c.35C>T	c.(34-36)GCC>GTC	p.A12V		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	12					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		CGGGGCTGGGGCTTGCTCCGG	0.632			T	BCL6	NHL								4	40					0	0	1	0	0	
ZW10	9183	broad.mit.edu	37	11	113630950	113630950	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:113630950C>A	uc001poe.2	-	5	598	c.561G>T	c.(559-561)TGG>TGT	p.W187C	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	187	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		GTGGGAACTTCCATACAATCA	0.398													7	54					0.000673444	0.000702938	1	1	0	
FAM55D	54827	broad.mit.edu	37	11	114453402	114453402	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:114453402C>T	uc001ppc.2	-	3	619	c.438G>A	c.(436-438)GCG>GCA	p.A146A	FAM55D_uc001ppd.2_Intron	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	146						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		CTGCCATCAGCGCTGGGGAAG	0.592													8	35					0	0	1	0	0	
DSCAML1	57453	broad.mit.edu	37	11	117374715	117374715	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:117374715T>C	uc001prh.1	-	11	2386	c.2384A>G	c.(2383-2385)TAC>TGC	p.Y795C		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	735	Extracellular (Potential).|Ig-like C2-type 8.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CACAGGGTGGTACTGCTGGGG	0.632													16	55					0	0	1	0	0	
MLL	4297	broad.mit.edu	37	11	118371815	118371815	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:118371815A>G	uc001pta.2	+	25	6286	c.6263A>G	c.(6262-6264)GAA>GGA	p.E2088G	MLL_uc001ptb.2_Missense_Mutation_p.E2091G	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2088					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AGCACTGTTGAACATGATGAA	0.408			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								8	76					0	0	1	0	0	
BCL9L	283149	broad.mit.edu	37	11	118769523	118769523	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:118769523C>T	uc001pug.2	-	8	5066	c.4101G>A	c.(4099-4101)GCG>GCA	p.A1367A	BCL9L_uc009zal.2_Silent_p.A1362A	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1367	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GAGTCTGCTCCGCCATCATGT	0.622													4	59					0	0	1	0	0	
BCL9L	283149	broad.mit.edu	37	11	118779232	118779232	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:118779232G>A	uc001pug.2	-	2	1124	c.159C>T	c.(157-159)GGC>GGT	p.G53G	BCL9L_uc009zal.2_Silent_p.G48G	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	53					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		ATTGGGCCCCGCCATTCCCTG	0.632													9	144					0	0	1	0	0	
ABCG4	64137	broad.mit.edu	37	11	119031359	119031359	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:119031359T>C	uc001pvs.2	+	14	2044	c.1708T>C	c.(1708-1710)TAT>CAT	p.Y570H	ABCG4_uc009zar.2_Missense_Mutation_p.Y570H	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	570	Extracellular (Potential).|ABC transmembrane type-2.				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CTATCTCTCCTATGTCAGGTC	0.587													35	236					0	0	1	0	0	
TECTA	7007	broad.mit.edu	37	11	120983879	120983879	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:120983879C>T	uc010rzo.1	+	4	585	c.585C>T	c.(583-585)GGC>GGT	p.G195G		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	195	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CGGCGAGTGGCGGCGACCCCC	0.577											OREG0021430	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	85					0	0	1	0	0	
TECTA	7007	broad.mit.edu	37	11	120998992	120998992	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:120998992T>A	uc010rzo.1	+	8	2306	c.2306T>A	c.(2305-2307)CTT>CAT	p.L769H		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	769	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTGCGGGGACTTCGGATCCTG	0.582													15	52					0	0	1	0	0	
C11orf63	79864	broad.mit.edu	37	11	122756782	122756782	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:122756782C>T	uc001pym.2	+	2	522	c.225C>T	c.(223-225)GAC>GAT	p.D75D	C11orf63_uc001pyl.1_Silent_p.D75D	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	75										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		ACAGCTTAGACGAGGAGGAAA	0.532													71	81					0	0	1	0	0	
C11orf63	79864	broad.mit.edu	37	11	122774668	122774668	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:122774668G>A	uc001pym.2	+	3	677	c.380G>A	c.(379-381)CGC>CAC	p.R127H	C11orf63_uc001pyl.1_Missense_Mutation_p.R127H	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	127										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		TCAGACCTCCGCTATGACCCG	0.458													36	229					0	0	1	0	0	
OR10G9	219870	broad.mit.edu	37	11	123894413	123894413	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:123894413G>T	uc010sad.1	+	1	694	c.694G>T	c.(694-696)GGG>TGG	p.G232W		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CACCTCAGAGGGGAGGCACAG	0.537													7	94					3.86212e-05	4.08594e-05	1	1	0	
CDON	50937	broad.mit.edu	37	11	125851195	125851195	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:125851195C>A	uc009zbw.2	-	17	3153	c.3025G>T	c.(3025-3027)GGA>TGA	p.G1009*	CDON_uc001qdb.3_Nonsense_Mutation_p.G386*|CDON_uc001qdc.3_Nonsense_Mutation_p.G1009*	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	1009	Cytoplasmic (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		ATATCTGATCCTTGGTAGAGA	0.338													9	86					7.48243e-07	8.04502e-07	1	1	0	
SRPR	6734	broad.mit.edu	37	11	126136744	126136744	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:126136744G>A	uc001qdh.2	-	5	651	c.600C>T	c.(598-600)AAC>AAT	p.N200N	SRPR_uc010sbm.1_Silent_p.N172N|FOXRED1_uc001qdi.2_5'Flank|FOXRED1_uc010sbn.1_5'Flank|FOXRED1_uc010sbo.1_5'Flank|FOXRED1_uc010sbp.1_5'Flank|FOXRED1_uc010sbq.1_5'Flank|FOXRED1_uc001qdj.2_5'Flank|FOXRED1_uc010sbr.1_5'Flank	NM_003139	NP_003130	P08240	SRPR_HUMAN	signal recognition particle receptor	200					SRP-dependent cotranslational protein targeting to membrane	integral to membrane|signal recognition particle receptor complex	GTP binding|GTPase activity|receptor activity|signal recognition particle binding				0	all_hematologic(175;0.145)			BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0736)		GTTCTACTCCGTTCTCAGGAC	0.507													15	111					0	0	1	0	0	
ST3GAL4	6484	broad.mit.edu	37	11	126278372	126278372	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:126278372T>C	uc001qds.2	+	8	827	c.608T>C	c.(607-609)ATC>ACC	p.I203T	ST3GAL4_uc001qdt.2_Missense_Mutation_p.I199T|ST3GAL4_uc009zcc.2_Missense_Mutation_p.I39T|ST3GAL4_uc009zcd.2_Missense_Mutation_p.I192T|ST3GAL4_uc001qdu.2_Missense_Mutation_p.I199T|ST3GAL4_uc001qdv.2_Missense_Mutation_p.I203T|ST3GAL4_uc009zce.2_Missense_Mutation_p.I199T|ST3GAL4_uc001qdw.2_Missense_Mutation_p.I192T|ST3GAL4_uc001qdx.1_Missense_Mutation_p.I160T|ST3GAL4_uc001qdy.2_Missense_Mutation_p.I39T|ST3GAL4_uc001qdz.2_Missense_Mutation_p.I39T	NM_006278	NP_006269	Q11206	SIA4C_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	203	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.138)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0767)		ATTGAGACCATCCTGAGTGAT	0.572													3	43					0	0	1	0	0	
TP53AIP1	63970	broad.mit.edu	37	11	128807638	128807638	+	Silent	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr11:128807638T>G	uc001qey.2	-	2	286	c.76A>C	c.(76-78)AGG>CGG	p.R26R	TP53AIP1_uc001qex.2_Silent_p.R26R|TP53AIP1_uc009zcm.1_RNA			Q9HCN2	TPIP1_HUMAN	RecName: Full=p53-regulated apoptosis-inducing protein 1;          Short=p53AIP1;	26					apoptosis	mitochondrion				lung(1)	1						TGGTCTCCCCTGCCCAGGCCC	0.602													5	106					0	0	1	0	0	
SLC6A13	6540	broad.mit.edu	37	12	333661	333661	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:333661A>G	uc001qic.1	-	10	1132	c.1079T>C	c.(1078-1080)ATC>ACC	p.I360T	SLC6A13_uc009zdj.1_Missense_Mutation_p.I350T|SLC6A13_uc010sdl.1_Missense_Mutation_p.I268T	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	360					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CGGGTAAGCGATGAAAGCCAG	0.627													5	39					0	0	1	0	0	
CACNA1C	775	broad.mit.edu	37	12	2795367	2795367	+	Nonsense_Mutation	SNP	C	T	T	rs78593627		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:2795367C>T	uc009zdu.1	+	48	6278	c.5965C>T	c.(5965-5967)CGA>TGA	p.R1989*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.R1903*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.R1906*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.R1925*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.R1895*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.R1914*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.R1906*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.R1925*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.R1912*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.R1947*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.R1914*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.R1954*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.R1906*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.R1926*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.R1906*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.R1923*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.R1941*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.R1934*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.R1906*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.R1925*|CACNA1C_uc001qki.1_Nonsense_Mutation_p.R1713*|CACNA1C_uc001qkj.1_Nonsense_Mutation_p.R1677*|CACNA1C_uc001qkk.1_Nonsense_Mutation_p.R1642*|CACNA1C_uc001qkm.1_Nonsense_Mutation_p.R1702*|CACNA1C_uc010sea.1_Nonsense_Mutation_p.R597*|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Nonsense_Mutation_p.R224*	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1989	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ATGTCTGAAGCGACAGAAGGA	0.557													4	76					0	0	1	0	0	
ENO2	2026	broad.mit.edu	37	12	7031296	7031296	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:7031296C>T	uc001qru.1	+	10	1367	c.1145C>T	c.(1144-1146)GCT>GTT	p.A382V	ENO2_uc009zfi.1_Missense_Mutation_p.A382V|ENO2_uc010sfq.1_Missense_Mutation_p.A339V|ENO2_uc001qrv.1_Missense_Mutation_p.A382V|ATN1_uc001qrw.1_5'Flank	NM_001975	NP_001966	P09104	ENOG_HUMAN	enolase 2	382					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex|plasma membrane	magnesium ion binding|phosphopyruvate hydratase activity				0						ACATTCATTGCTGACCTGGTG	0.567													9	47					0	0	1	0	0	
RIMKLB	57494	broad.mit.edu	37	12	8904616	8904616	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:8904616T>G	uc001quu.2	+	4	721	c.470T>G	c.(469-471)GTA>GGA	p.V157G	RIMKLB_uc009zgf.1_RNA|RIMKLB_uc001qux.2_Missense_Mutation_p.V157G|RIMKLB_uc010sgl.1_Missense_Mutation_p.V157G|RIMKLB_uc001quw.2_Missense_Mutation_p.V157G	NM_020734	NP_065785	Q9ULI2	RIMKB_HUMAN	ribosomal modification protein rimK-like family	157	ATP-grasp.|ATP (By similarity).				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CCAATGGTAGTAAAGAATACG	0.363													21	93					0	0	1	0	0	
STYK1	55359	broad.mit.edu	37	12	10786645	10786645	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:10786645A>G	uc001qys.2	-	4	652	c.131T>C	c.(130-132)ATC>ACC	p.I44T		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	44	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						AAGCCACAGGATGACCCCAAG	0.473										HNSCC(73;0.22)			14	149					0	0	1	0	0	
PDE6H	5149	broad.mit.edu	37	12	15130994	15130994	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:15130994T>C	uc001rcr.2	+	2	132	c.48T>C	c.(46-48)CCT>CCC	p.P16P		NM_006205	NP_006196	Q13956	CNCG_HUMAN	phosphodiesterase 6H	16					visual perception		3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|enzyme inhibitor activity			ovary(1)|skin(1)	2						ACCAGGGTCCTACCACCCCAC	0.517													5	29					0	0	1	0	0	
SOX5	6660	broad.mit.edu	37	12	23999114	23999114	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:23999114T>C	uc001rfw.2	-	3	386	c.284A>G	c.(283-285)AAT>AGT	p.N95S	SOX5_uc001rfx.2_Missense_Mutation_p.N82S|SOX5_uc001rfy.2_Missense_Mutation_p.N82S|SOX5_uc010siv.1_Missense_Mutation_p.N82S|SOX5_uc010siw.1_RNA|SOX5_uc001rfz.1_Missense_Mutation_p.N47S|SOX5_uc001rga.2_Missense_Mutation_p.N60S	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	95					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						CATAACTTTATTGCCATCAAC	0.418													13	44					0	0	1	0	0	
PPFIBP1	8496	broad.mit.edu	37	12	27834507	27834507	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:27834507A>G	uc001ric.1	+	21	2319	c.1942A>G	c.(1942-1944)ACC>GCC	p.T648A	PPFIBP1_uc010sjr.1_Missense_Mutation_p.T479A|PPFIBP1_uc001rib.1_Missense_Mutation_p.T642A|PPFIBP1_uc001ria.2_Missense_Mutation_p.T617A|PPFIBP1_uc001rid.1_Missense_Mutation_p.T495A|PPFIBP1_uc001rif.1_Missense_Mutation_p.T155A	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	648	SAM 1.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					TGCCAAGTGGACCAAGGAGCA	0.448													12	111					0	0	1	0	0	
CNTN1	1272	broad.mit.edu	37	12	41327326	41327326	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:41327326G>A	uc001rmm.1	+	8	880	c.767G>A	c.(766-768)GGC>GAC	p.G256D	CNTN1_uc009zjy.1_Missense_Mutation_p.G256D|CNTN1_uc001rmn.1_Missense_Mutation_p.G245D|CNTN1_uc001rmo.2_Missense_Mutation_p.G256D	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	256	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GCATTGATGGGCCAAAATGTG	0.284													32	170					0	0	1	0	0	
PRICKLE1	144165	broad.mit.edu	37	12	42858731	42858731	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:42858731C>T	uc010skv.1	-	7	1392	c.1105G>A	c.(1105-1107)GAC>AAC	p.D369N	PRICKLE1_uc001rnl.2_Missense_Mutation_p.D369N|PRICKLE1_uc010skw.1_Missense_Mutation_p.D369N|PRICKLE1_uc001rnm.2_Missense_Mutation_p.D369N	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	369					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		GAAAGGGTGTCATCAGCATTG	0.483													6	76					0	0	1	0	0	
COL2A1	1280	broad.mit.edu	37	12	48393797	48393797	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:48393797T>C	uc001rqu.2	-	2	378	c.197A>G	c.(196-198)GAC>GGC	p.D66G	COL2A1_uc001rqv.2_Intron	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	66	VWFC.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	ACAGATTATGTCGTCGCAGAG	0.567													4	79					0	0	1	0	0	
PFKM	5213	broad.mit.edu	37	12	48534510	48534510	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:48534510T>C	uc001rrc.2	+	14	1367	c.1197T>C	c.(1195-1197)GGT>GGC	p.G399G	PFKM_uc001rra.1_Silent_p.G84G|PFKM_uc001rrb.1_Silent_p.G470G|PFKM_uc001rrd.2_Silent_p.G84G|PFKM_uc001rre.1_Silent_p.G399G|PFKM_uc001rrg.1_Silent_p.G368G	NM_000289	NP_000280	P08237	K6PF_HUMAN	phosphofructokinase, muscle	399					fructose 6-phosphate metabolic process|glycolysis|muscle cell homeostasis	6-phosphofructokinase complex|apical plasma membrane	6-phosphofructokinase activity|ATP binding|identical protein binding|kinase binding|metal ion binding|protein C-terminus binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4						TATAGAGTGGTTCGCACACAG	0.562													7	115					0	0	1	0	0	
PRKAG1	5571	broad.mit.edu	37	12	49406895	49406895	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:49406895T>C	uc001rsy.2	-	2	79	c.10_splice	c.e2-1	p.V4_splice	uc001rsw.2_Intron|PRKAG1_uc010smd.1_Splice_Site|PRKAG1_uc001rsx.2_Splice_Site|PRKAG1_uc001rsz.2_Splice_Site_p.V4_splice|PRKAG1_uc009zlb.2_Splice_Site|PRKAG1_uc010sme.1_Splice_Site_p.V4_splice	NM_002733	NP_002724	P54619	AAKG1_HUMAN	AMP-activated protein kinase, noncatalytic						cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|positive regulation of protein kinase activity|regulation of fatty acid oxidation|regulation of glycolysis|spermatogenesis	cytosol	cAMP-dependent protein kinase activity|cAMP-dependent protein kinase regulator activity|protein kinase binding			kidney(1)	1						AGAAATGACCTGGAGAGATAA	0.418													4	57					0	0	1	0	0	
PRPH	5630	broad.mit.edu	37	12	49690007	49690007	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:49690007G>A	uc001rtu.2	+	2	667	c.592G>A	c.(592-594)GTG>ATG	p.V198M		NM_006262	NP_006253	P41219	PERI_HUMAN	peripherin	198	Coil 1B.|Rod.						structural molecule activity				0						GCACAACCTCGTGCTCTTCCG	0.677													4	24					0	0	1	0	0	
LIMA1	51474	broad.mit.edu	37	12	50575791	50575791	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:50575791G>A	uc001rwj.3	-	10	1344	c.1170C>T	c.(1168-1170)TGC>TGT	p.C390C	LIMA1_uc001rwg.3_Silent_p.C88C|LIMA1_uc001rwh.3_Silent_p.C229C|LIMA1_uc001rwi.3_Silent_p.C231C|LIMA1_uc001rwk.3_Silent_p.C391C|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	390	LIM zinc-binding.				actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GACATTCCACGCAGGTCTCTC	0.478													14	94					0	0	1	0	0	
SCN8A	6334	broad.mit.edu	37	12	52200910	52200910	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:52200910A>G	uc001ryw.2	+	27	5818	c.5640A>G	c.(5638-5640)AAA>AAG	p.K1880K	uc001rzb.1_5'Flank	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1880					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	ATCCTTCCAAAGTGTCTTACG	0.582													26	187					0	0	1	0	0	
KRT2	3849	broad.mit.edu	37	12	53040639	53040639	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:53040639C>A	uc001sat.2	-	7	1387	c.1354G>T	c.(1354-1356)GCC>TCC	p.A452S		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	452	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TCCTCCTTGGCCTGCTGCAGG	0.597													20	128					7.45023e-12	8.34503e-12	1	1	0	
DCD	117159	broad.mit.edu	37	12	55042151	55042151	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:55042151A>G	uc001sgj.2	-	1	1	c.-61_splice	c.e1-1		DCD_uc009znt.2_Splice_Site|DCD_uc009znu.2_Splice_Site	NM_053283	NP_444513	P81605	DCD_HUMAN	dermcidin preproprotein						defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			ovary(1)	1		Myeloproliferative disorder(1001;0.0255)				TAGGGTGTCAAGACTGCCTCT	0.527													3	22					0	0	1	0	0	
GLS2	27165	broad.mit.edu	37	12	56872948	56872948	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:56872948A>G	uc001slj.2	-	4	701	c.422T>C	c.(421-423)ATT>ACT	p.I141T	GLS2_uc009zos.2_RNA|GLS2_uc001slk.2_Intron|GLS2_uc009zot.2_Intron	NM_013267	NP_037399	Q9UI32	GLSL_HUMAN	glutaminase 2 precursor	141					cellular amino acid biosynthetic process|glutamate secretion|glutamine metabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity|protein binding			ovary(1)|central_nervous_system(1)	2					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CAGGAGCACAATGTTGCTGCT	0.448													6	47					0	0	1	0	0	
PTGES3	10728	broad.mit.edu	37	12	57064084	57064084	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:57064084A>G	uc001slu.3	-	5	645	c.350T>C	c.(349-351)ATG>ACG	p.M117T	PTGES3_uc001slw.3_RNA|PTGES3_uc010sqs.1_Missense_Mutation_p.M84T|PTGES3_uc001slv.3_Intron|PTGES3_uc010sqt.1_Missense_Mutation_p.M117T|PTGES3_uc009zox.2_Intron	NM_006601	NP_006592	Q15185	TEBP_HUMAN	prostaglandin-E synthase 3	117	Asp/Glu-rich.				chaperone cofactor-dependent protein refolding|hormone biosynthetic process|prostaglandin biosynthetic process|signal transduction|telomere maintenance	cytosol|telomerase holoenzyme complex	prostaglandin-E synthase activity|telomerase activity|unfolded protein binding				0						AAAATTAGACATGTCTTCATC	0.368													4	63					0	0	1	0	0	
ZBTB39	9880	broad.mit.edu	37	12	57396722	57396722	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:57396722C>T	uc001sml.1	-	2	2066	c.1980G>A	c.(1978-1980)ATG>ATA	p.M660I	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	660					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						TGCAGCGGTACATGAGGGCCC	0.557													8	89					0	0	1	0	0	
CYP27B1	1594	broad.mit.edu	37	12	58158953	58158953	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:58158953C>A	uc001spz.1	-	4	783	c.631G>T	c.(631-633)GAG>TAG	p.E211*	CYP27B1_uc001sqa.1_5'UTR|CYP27B1_uc001sqb.1_Missense_Mutation_p.G91V|CYP27B1_uc001sqc.1_Missense_Mutation_p.G91V	NM_000785	NP_000776	O15528	CP27B_HUMAN	cytochrome P450, family 27, subfamily B,	211					bone mineralization|calcium ion homeostasis|calcium ion transport|decidualization|G1 to G0 transition|hormone biosynthetic process|negative regulation of calcidiol 1-monooxygenase activity|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of keratinocyte differentiation|positive regulation of vitamin D 24-hydroxylase activity|positive regulation of vitamin D receptor signaling pathway|regulation of bone mineralization|response to estrogen stimulus|response to interferon-gamma|response to lipopolysaccharide|response to tumor necrosis factor|response to vitamin D|vitamin D biosynthetic process|xenobiotic metabolic process	mitochondrial outer membrane	calcidiol 1-monooxygenase activity|electron carrier activity|heme binding			central_nervous_system(3)	3	all_cancers(7;8.09e-80)|Lung NSC(6;2.26e-27)|all_lung(6;1.99e-25)|all_epithelial(6;3.62e-18)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;1.97e-113)|all cancers(5;1.54e-78)|BRCA - Breast invasive adenocarcinoma(9;0.0294)		Calcidiol(DB00146)|Calcitriol(DB00136)|Ergocalciferol(DB00153)	ACTTGAGCCTCCAGGCAGCCC	0.697											OREG0021953	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	27					6.4e-05	6.74743e-05	1	1	0	
LRIG3	121227	broad.mit.edu	37	12	59308081	59308081	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:59308081T>C	uc001sqr.2	-	2	519	c.273A>G	c.(271-273)GCA>GCG	p.A91A	LRIG3_uc009zqh.2_Silent_p.A31A|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	91	LRR 1.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			TCATGGAACTTGCCTTGATGA	0.333													21	109					0	0	1	0	0	
FAM19A2	338811	broad.mit.edu	37	12	62148754	62148754	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:62148754C>T	uc001sqw.2	-	3	1671	c.158G>A	c.(157-159)TGT>TAT	p.C53Y	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Missense_Mutation_p.C53Y|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	53						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		GTTCTTATTACAGCATCTGTG	0.478													4	46					0	0	1	0	0	
LGR5	8549	broad.mit.edu	37	12	71833904	71833904	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:71833904T>C	uc001swl.2	+	1	92	c.44T>C	c.(43-45)CTG>CCG	p.L15P	TSPAN8_uc001swk.1_Intron|LGR5_uc001swm.2_Missense_Mutation_p.L15P|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	15						integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						TTGCCTGTGCTGCTGCAGCTG	0.687													10	92					0	0	1	0	0	
KCNC2	3747	broad.mit.edu	37	12	75436122	75436122	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:75436122T>G	uc001sxe.2	-	5	2357	c.1813A>C	c.(1813-1815)ACG>CCG	p.T605P	KCNC2_uc009zry.2_Intron|KCNC2_uc001sxf.2_Missense_Mutation_p.T550P	NM_139136	NP_631874	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	Error:Variant_position_missing_in_Q96PR1_after_alignment					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						TCGGCTTGCGTGTAACCAGTA	0.418													12	64					0	0	1	0	0	
CAPS2	84698	broad.mit.edu	37	12	75692521	75692521	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:75692521A>G	uc001sxk.3	-	12	1244	c.1047T>C	c.(1045-1047)AGT>AGC	p.S349S	CAPS2_uc001sxm.3_Silent_p.S117S|CAPS2_uc009zsa.2_Intron|CAPS2_uc001sxi.3_Silent_p.S85S|CAPS2_uc001sxj.3_Silent_p.S260S|CAPS2_uc001sxl.3_Silent_p.S330S	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	349							calcium ion binding			ovary(2)	2						CACACTGATGACTATAAATGC	0.343													7	45					0	0	1	0	0	
FAM71C	196472	broad.mit.edu	37	12	100042081	100042081	+	Silent	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:100042081A>T	uc001tgn.2	+	1	551	c.129A>T	c.(127-129)GCA>GCT	p.A43A	ANKS1B_uc001tge.1_Intron|ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Intron	NM_153364	NP_699195	Q8NEG0	FA71C_HUMAN	hypothetical protein LOC196472	43											0				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		TCAGGTATGCACCCATGTTTG	0.512													6	104					0	0	1	0	0	
NUAK1	9891	broad.mit.edu	37	12	106461727	106461727	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:106461727C>T	uc001tlj.1	-	7	2219	c.839G>A	c.(838-840)CGA>CAA	p.R280Q		NM_014840	NP_055655	O60285	NUAK1_HUMAN	AMPK-related protein kinase 5	280	Protein kinase.						ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2						TATGAGTCCTCGAGCATCTAA	0.537													7	59					0	0	1	0	0	
POLR3B	55703	broad.mit.edu	37	12	106827564	106827564	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:106827564A>G	uc001tlp.2	+	16	1917	c.1695A>G	c.(1693-1695)GCA>GCG	p.A565A	POLR3B_uc001tlq.2_Silent_p.A507A	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	565					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TGAGAAGAGCAGGATATATCA	0.378													20	53					0	0	1	0	0	
CUX2	23316	broad.mit.edu	37	12	111758153	111758153	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:111758153C>T	uc001tsa.1	+	17	2493	c.2340C>T	c.(2338-2340)GGC>GGT	p.G780G		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	780						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCGAGATCGGCGACGCCGGCT	0.726													15	66					0	0	1	0	0	
TBX5	6910	broad.mit.edu	37	12	114841616	114841616	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:114841616T>C	uc001tvo.2	-	2	583	c.88A>G	c.(88-90)AGC>GGC	p.S30G	TBX5_uc001tvp.2_Missense_Mutation_p.S30G|TBX5_uc001tvq.2_Intron|TBX5_uc010syv.1_Missense_Mutation_p.S30G	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	30				GFGLAHTPLEPDAKDLPCDSKPESALGAPSKSPSSPQAAFT QQ -> ALAGAHLWSLTQKTCLRFEPRARSGPPASPPGRPR SRLHPA (in Ref. 1; CAA70592).	cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		CCGAGCGCGCTCTCGGGTTTC	0.677													6	90					0	0	1	0	0	
ANKLE2	23141	broad.mit.edu	37	12	133306511	133306511	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr12:133306511C>T	uc001ukx.2	-	11	2304	c.2237G>A	c.(2236-2238)CGT>CAT	p.R746H	ANKLE2_uc009zyw.1_Missense_Mutation_p.R101H	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	746						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		GGAAACGCTACGTCCTATATT	0.453													37	58					0	0	1	0	0	
CRYL1	51084	broad.mit.edu	37	13	20978274	20978274	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:20978274G>T	uc001une.2	-	8	1033	c.954C>A	c.(952-954)CCC>CCA	p.P318P	CRYL1_uc001unf.2_Silent_p.P296P|CRYL1_uc001ung.2_Silent_p.P296P	NM_015974	NP_057058	Q9Y2S2	CRYL1_HUMAN	lambda-crystallin	318					fatty acid metabolic process	cytosol	3-hydroxyacyl-CoA dehydrogenase activity|L-gulonate 3-dehydrogenase activity|NAD+ binding|protein homodimerization activity				0		all_cancers(29;2.27e-23)|all_epithelial(30;1.69e-19)|all_lung(29;8.29e-18)|Lung SC(185;0.0262)|Ovarian(182;0.0827)|Hepatocellular(188;0.244)		all cancers(112;6.6e-05)|Epithelial(112;0.00178)|OV - Ovarian serous cystadenocarcinoma(117;0.0169)|Lung(94;0.0215)|GBM - Glioblastoma multiforme(144;0.0402)|LUSC - Lung squamous cell carcinoma(192;0.061)		AAATTCACTGGGGCTGCACTT	0.542													7	110					1.76689e-08	1.92875e-08	1	1	0	
LOC374491	374491	broad.mit.edu	37	13	25168501	25168501	+	RNA	SNP	G	A	A	rs4770716	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:25168501G>A	uc001upm.2	+	10		c.1173G>A			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TTTTCTCTTCGGTGAGTAATC	0.388													3	38					0	0	1	0	0	
RNF6	6049	broad.mit.edu	37	13	26788301	26788301	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:26788301T>G	uc001uqo.2	-	5	2009	c.1718A>C	c.(1717-1719)AAT>ACT	p.N573T	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.N573T|RNF6_uc001uqp.2_Missense_Mutation_p.N573T|RNF6_uc001uqq.2_Missense_Mutation_p.N573T|RNF6_uc010tdk.1_Missense_Mutation_p.N217T	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	573					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		ATTGTTTGGATTTCGCAACTG	0.448													19	149					0	0	1	0	0	
USPL1	10208	broad.mit.edu	37	13	31205337	31205337	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:31205337A>C	uc001utc.2	+	4	1026	c.594A>C	c.(592-594)AGA>AGC	p.R198S	USPL1_uc001utb.2_Missense_Mutation_p.R17S|USPL1_uc001utd.2_Intron|USPL1_uc001ute.1_5'Flank	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	198					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		GAACTGGCAGACCTTCCCCTC	0.443													18	126					0	0	1	0	0	
USPL1	10208	broad.mit.edu	37	13	31232640	31232640	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:31232640G>A	uc001utc.2	+	9	2858	c.2426G>A	c.(2425-2427)AGC>AAC	p.S809N	USPL1_uc001utd.2_Missense_Mutation_p.S480N|USPL1_uc001ute.1_Missense_Mutation_p.S480N	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	809					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		CAGAAGGCCAGCCACGTATCC	0.448													5	68					0	0	1	0	0	
SMAD9	4093	broad.mit.edu	37	13	37446863	37446863	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:37446863G>A	uc001uvw.2	-	3	945	c.602C>T	c.(601-603)CCG>CTG	p.P201L	SMAD9_uc001uvx.2_Missense_Mutation_p.P201L|SMAD9_uc010tep.1_Missense_Mutation_p.P31L	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	201					BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GGCCGTGCACGGGGACTGGGA	0.587													7	57					0	0	1	0	0	
PHF11	51131	broad.mit.edu	37	13	50095043	50095043	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:50095043C>T	uc001vdb.2	+	5	809	c.472C>T	c.(472-474)CAA>TAA	p.Q158*	PHF11_uc001vdc.2_Nonsense_Mutation_p.Q119*|PHF11_uc001vdd.2_RNA	NM_001040443	NP_001035533	Q9UIL8	PHF11_HUMAN	PHD finger protein 11 isoform a	158	PHD-type; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding				0		Lung NSC(96;2.1e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.38e-09)		GCTTTGCCAGCAACATGCTCA	0.289													5	42					0	0	1	0	0	
THSD1	55901	broad.mit.edu	37	13	52952670	52952670	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:52952670A>G	uc001vgo.2	-	5	1980	c.1435T>C	c.(1435-1437)TCG>CCG	p.S479P	THSD1_uc001vgp.2_Missense_Mutation_p.S426P|THSD1_uc010tgz.1_Missense_Mutation_p.S100P|THSD1_uc010aea.2_5'UTR	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	479	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		CCCCCATCCGAGAAGCTCCCG	0.652													4	59					0	0	1	0	0	
EDNRB	1910	broad.mit.edu	37	13	78477385	78477385	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:78477385T>G	uc001vko.2	-	3	965	c.707A>C	c.(706-708)GAA>GCA	p.E236A	EDNRB_uc001vkq.1_Missense_Mutation_p.E236A|uc001vkn.1_Intron|EDNRB_uc010aez.1_Missense_Mutation_p.E236A|EDNRB_uc001vkp.1_Missense_Mutation_p.E319A	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	236	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	ACCTATGGCTTCAGGGACAGC	0.418													21	135					0	0	1	0	0	
PCCA	5095	broad.mit.edu	37	13	100909900	100909900	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr13:100909900G>A	uc001voo.2	+	9	727	c.689G>A	c.(688-690)CGC>CAC	p.R230H	PCCA_uc010aga.2_Missense_Mutation_p.R204H|PCCA_uc010tiz.1_Missense_Mutation_p.R230H	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	230	ATP-grasp.|Biotin carboxylation.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	AAAGGCATGCGCATTGCTTGG	0.443													7	38					0	0	1	0	0	
OR4K14	122740	broad.mit.edu	37	14	20483284	20483284	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:20483284A>G	uc010tky.1	-	1	69	c.69T>C	c.(67-69)CTT>CTC	p.L23L		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		AAAAATTTTGAAGATGTCGTG	0.403													13	48					0	0	1	0	0	
CHD8	57680	broad.mit.edu	37	14	21896152	21896152	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:21896152G>A	uc001was.1	-	4	734	c.640C>T	c.(640-642)CGG>TGG	p.R214W	CHD8_uc001war.1_Missense_Mutation_p.R110W	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	493					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCCTCTGGCCGAACGCTGGGC	0.542													28	40					0	0	1	0	0	
MYH6	4624	broad.mit.edu	37	14	23874886	23874886	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:23874886G>A	uc001wjv.2	-	4	362	c.295C>T	c.(295-297)CCC>TCC	p.P99S	MYH6_uc010akp.1_Missense_Mutation_p.P99S	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	99	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		AGCACCGCGGGCTCGTGCAGG	0.587													11	39					0	0	1	0	0	
SCFD1	23256	broad.mit.edu	37	14	31119854	31119854	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:31119854C>T	uc001wqm.1	+	9	777	c.753C>T	c.(751-753)TTC>TTT	p.F251F	SCFD1_uc001wqn.1_Silent_p.F184F|SCFD1_uc010tpg.1_Silent_p.F192F|SCFD1_uc010tph.1_Silent_p.F66F|SCFD1_uc010amf.1_Silent_p.F66F|SCFD1_uc010tpi.1_Silent_p.F159F|SCFD1_uc010amd.1_Silent_p.F83F|SCFD1_uc010ame.1_Silent_p.F184F	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	251					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		CTGGCCAATTCAGGTATTACT	0.289													3	35					0	0	1	0	0	
BAZ1A	11177	broad.mit.edu	37	14	35264077	35264077	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:35264077G>T	uc001wsk.2	-	11	1809	c.1241C>A	c.(1240-1242)ACA>AAA	p.T414K	BAZ1A_uc001wsl.2_Missense_Mutation_p.T414K	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	414					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		TTTCACTGGTGTTGGTTCTGG	0.363													10	67					2.17888e-05	2.31945e-05	1	1	0	
KLHL28	54813	broad.mit.edu	37	14	45398293	45398293	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:45398293T>G	uc001wvq.2	-	5	1900	c.1654A>C	c.(1654-1656)ACG>CCG	p.T552P	KLHL28_uc001wvr.2_Missense_Mutation_p.T552P	NM_017658	NP_060128	Q9NXS3	KLH28_HUMAN	BTB (POZ) domain containing 5	552	Kelch 6.									ovary(1)	1						TCCAGCCACGTATCTGAGATA	0.438													10	161					0	0	1	0	0	
DACT1	51339	broad.mit.edu	37	14	59113504	59113504	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:59113504T>C	uc001xdw.2	+	4	2327	c.2163T>C	c.(2161-2163)GCT>GCC	p.A721A	DACT1_uc010trv.1_Silent_p.A440A|DACT1_uc001xdx.2_Silent_p.A684A|DACT1_uc010trw.1_Silent_p.A440A	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	721					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						CCTACGTGGCTAGCGACTCCG	0.662													6	60					0	0	1	0	0	
JKAMP	51528	broad.mit.edu	37	14	59954418	59954418	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:59954418T>A	uc001xei.3	+	3	667	c.165T>A	c.(163-165)AAT>AAA	p.N55K	JKAMP_uc001xef.3_Missense_Mutation_p.N41K|JKAMP_uc001xeh.3_Missense_Mutation_p.N35K|JKAMP_uc001xeg.3_Missense_Mutation_p.N49K|JKAMP_uc010try.1_5'UTR|JKAMP_uc001xej.3_5'UTR	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	56	Lumenal (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						AGAGAACGAATGCACAGAAAT	0.358													12	132					0	0	1	0	0	
KCNH5	27133	broad.mit.edu	37	14	63483580	63483580	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:63483580C>T	uc001xfx.2	-	2	217	c.166G>A	c.(166-168)GCT>ACT	p.A56T	KCNH5_uc001xfy.2_Missense_Mutation_p.A56T|KCNH5_uc001xfz.1_5'UTR|KCNH5_uc001xga.2_5'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	56	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ATGACGTCAGCTCGATGATAT	0.363													6	63					0	0	1	0	0	
ZBTB1	22890	broad.mit.edu	37	14	64988534	64988534	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:64988534A>G	uc001xhh.3	+	4	743	c.312A>G	c.(310-312)CTA>CTG	p.L104L	ZBTB1_uc010aqg.2_Silent_p.L104L|ZBTB1_uc001xhi.2_Silent_p.L104L	NM_001123329	NP_001116801	Q9Y2K1	ZBTB1_HUMAN	zinc finger and BTB domain containing 1 isoform	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		all_lung(585;0.000567)|Myeloproliferative disorder(585;0.0255)|all_neural(303;0.0294)		UCEC - Uterine corpus endometrioid carcinoma (185;0.0182)|all cancers(60;3.78e-43)|OV - Ovarian serous cystadenocarcinoma(108;1.22e-20)|BRCA - Breast invasive adenocarcinoma(234;6.75e-06)|KIRC - Kidney renal clear cell carcinoma(182;0.00269)|STAD - Stomach adenocarcinoma(64;0.012)		TGAACTACCTACAGCTATACA	0.378													6	108					0	0	1	0	0	
RAB15	376267	broad.mit.edu	37	14	65419254	65419254	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:65419254C>A	uc001xhz.2	-	2	241	c.160G>T	c.(160-162)GGC>TGC	p.G54C	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_RNA	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family	54					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		ACTTTGATGCCGTCTACCTCT	0.453													7	96					0.00307968	0.00319512	1	1	0	
EXD2	55218	broad.mit.edu	37	14	69707665	69707665	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:69707665C>A	uc001xkt.2	+	11	1998	c.1339C>A	c.(1339-1341)CTG>ATG	p.L447M	EXD2_uc001xku.2_Missense_Mutation_p.L317M|EXD2_uc001xkv.2_Missense_Mutation_p.L572M|EXD2_uc001xkw.2_Missense_Mutation_p.L447M|EXD2_uc010aqt.2_Missense_Mutation_p.L572M|EXD2_uc010tte.1_Missense_Mutation_p.L572M|EXD2_uc001xky.2_Missense_Mutation_p.L447M	NM_018199	NP_060669	Q9NVH0	EXD2_HUMAN	exonuclease 3'-5' domain containing 2	447					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						CCAGGGTGGCCTGCGCTCCCT	0.562													4	29					0.00024832	0.000260463	1	1	0	
TMEM90A	646658	broad.mit.edu	37	14	74874344	74874344	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:74874344C>T	uc001xpx.2	-	4	859	c.611G>A	c.(610-612)CGC>CAC	p.R204H		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	204					response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		GAGGGCCCGGCGGGAGGTGGT	0.637													13	87					0	0	1	0	0	
ALKBH1	8846	broad.mit.edu	37	14	78140225	78140225	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:78140225G>A	uc001xuc.1	-	6	1109	c.1100C>T	c.(1099-1101)ACA>ATA	p.T367I	ALKBH1_uc001xud.1_RNA	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	367					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		GAAACCTTCTGTACTGATGTC	0.483													7	94					0	0	1	0	0	
C14orf156	81892	broad.mit.edu	37	14	78174499	78174499	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:78174499T>C	uc001xue.3	+	1	75	c.45T>C	c.(43-45)AGT>AGC	p.S15S	ALKBH1_uc001xuc.1_5'Flank|ALKBH1_uc001xud.1_5'Flank	NM_031210	NP_112487	Q9GZT3	SLIRP_HUMAN	SRA stem-loop-interacting RNA-binding protein	15					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	nucleotide binding|RNA binding				0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0276)		TGCGTAGAAGTATCAATCAGC	0.542													9	54					0	0	1	0	0	
BTBD7	55727	broad.mit.edu	37	14	93717898	93717898	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:93717898G>A	uc001ybo.2	-	8	2179	c.1853C>T	c.(1852-1854)GCC>GTC	p.A618V	BTBD7_uc010aur.2_Missense_Mutation_p.A143V|BTBD7_uc010two.1_Missense_Mutation_p.A438V|BTBD7_uc001ybp.2_Missense_Mutation_p.A267V	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	618										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		CTGTGGCACGGCATTATTGAC	0.493													24	160					0	0	1	0	0	
DYNC1H1	1778	broad.mit.edu	37	14	102505767	102505767	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:102505767T>C	uc001yks.2	+	61	11643	c.11479T>C	c.(11479-11481)TAC>CAC	p.Y3827H		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	3827					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CTTGTACCAGTACTCCCTCCA	0.542													10	54					0	0	1	0	0	
KIF26A	26153	broad.mit.edu	37	14	104641626	104641626	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:104641626A>T	uc001yos.3	+	12	2501	c.2501A>T	c.(2500-2502)GAC>GTC	p.D834V		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	834					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CGAGACGCAGACCACTTCCGC	0.672													3	17					0	0	1	0	0	
AHNAK2	113146	broad.mit.edu	37	14	105414753	105414753	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:105414753C>T	uc010axc.1	-	7	7155	c.7035G>A	c.(7033-7035)GCG>GCA	p.A2345A	AHNAK2_uc001ypx.2_Silent_p.A2245A	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2345						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCACCTTCAACGCAGACACAT	0.597													21	221					0	0	1	0	0	
NDNL2	56160	broad.mit.edu	37	15	29561233	29561233	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:29561233T>C	uc001zco.2	-	1	785	c.677A>G	c.(676-678)GAC>GGC	p.D226G	FAM189A1_uc010azk.1_Intron	NM_138704	NP_619649	Q96MG7	MAGG1_HUMAN	necdin-like 2	226	MAGE.				regulation of growth	cytoplasm|nucleus					0		all_lung(180;4.69e-11)|Breast(32;0.0013)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00736)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TCGCACAAAGTCCTCAGTAAT	0.537													13	106					0	0	1	0	0	
TJP1	7082	broad.mit.edu	37	15	30019143	30019143	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:30019143T>C	uc001zcr.2	-	17	2628	c.2153A>G	c.(2152-2154)TAT>TGT	p.Y718C	TJP1_uc010azl.2_Missense_Mutation_p.Y706C|TJP1_uc001zcq.2_Missense_Mutation_p.Y722C|TJP1_uc001zcs.2_Missense_Mutation_p.Y718C	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	718	Guanylate kinase-like.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		CCACTGGGCATAGTTAAGACG	0.348													18	96					0	0	1	0	0	
AQR	9716	broad.mit.edu	37	15	35176884	35176884	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:35176884T>C	uc001ziv.2	-	26	3050	c.2869A>G	c.(2869-2871)ACA>GCA	p.T957A		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	957						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TCTGGCAATGTACTACCTTTA	0.368													7	49					0	0	1	0	0	
SPRED1	161742	broad.mit.edu	37	15	38632046	38632046	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:38632046T>C	uc001zka.3	+	5	867	c.532T>C	c.(532-534)TTT>CTT	p.F178L		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	178					inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		ACCTTCTCCCTTTGAAGATCT	0.388									Legius_syndrome				9	47					0	0	1	0	0	
VPS18	57617	broad.mit.edu	37	15	41192972	41192972	+	Silent	SNP	C	T	T	rs140514025		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:41192972C>T	uc001zne.2	+	4	2295	c.1956C>T	c.(1954-1956)TGC>TGT	p.C652C		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	652	Clathrin.				endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TGGAGTTCTGCGTGAACGTGC	0.622													22	81					0	0	1	0	0	
PLA2G4F	255189	broad.mit.edu	37	15	42434265	42434265	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:42434265C>T	uc001zoz.2	-	20	2530	c.2467G>A	c.(2467-2469)GTC>ATC	p.V823I	PLA2G4F_uc010bcq.2_Missense_Mutation_p.V120I|PLA2G4F_uc001zoy.2_Missense_Mutation_p.V455I|PLA2G4F_uc010bcr.2_Missense_Mutation_p.V574I|PLA2G4F_uc001zpa.2_Missense_Mutation_p.V574I|PLA2G4F_uc010bcs.2_Missense_Mutation_p.V610I	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	823	PLA2c.				phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		TTGTTCAGGACGTTGTATCGA	0.597													8	62					0	0	1	0	0	
DUOX2	50506	broad.mit.edu	37	15	45398766	45398766	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:45398766T>G	uc010bea.2	-	16	2108	c.1905A>C	c.(1903-1905)AAA>AAC	p.K635N	DUOX2_uc001zun.2_Missense_Mutation_p.K635N	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	635	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TCACGCTCTCTTTGAGTTTCT	0.557													7	151					0	0	1	0	0	
NARG2	79664	broad.mit.edu	37	15	60740299	60740299	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:60740299T>C	uc002agp.2	-	11	2400	c.2165A>G	c.(2164-2166)TAC>TGC	p.Y722C	NARG2_uc002ago.2_Missense_Mutation_p.Y585C|NARG2_uc002agq.3_Intron	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	722						nucleus				ovary(1)|lung(1)	2						AGGAGCTAGGTATTCCGATGT	0.368													6	45					0	0	1	0	0	
NEO1	4756	broad.mit.edu	37	15	73562761	73562761	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:73562761G>A	uc002avm.3	+	18	2965	c.2823G>A	c.(2821-2823)TGG>TGA	p.W941*	NEO1_uc010ukx.1_Nonsense_Mutation_p.W941*|NEO1_uc010uky.1_Nonsense_Mutation_p.W941*|NEO1_uc010ukz.1_Nonsense_Mutation_p.W365*|NEO1_uc002avn.3_Nonsense_Mutation_p.W590*	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	941	Extracellular (Potential).|Fibronectin type-III 5.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CAAGTACATGGAGTATGACAG	0.433													4	31					0	0	1	0	0	
LINGO1	84894	broad.mit.edu	37	15	77907220	77907220	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:77907220A>G	uc002bct.1	-	2	1081	c.1029T>C	c.(1027-1029)TCT>TCC	p.S343S	LINGO1_uc002bcu.1_Silent_p.S337S	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	343	Extracellular (Potential).|LRR 11.				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						GCTGGTTGCCAGAGACATTGA	0.642													3	20					0	0	1	0	0	
ADAMTS7	11173	broad.mit.edu	37	15	79058532	79058532	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:79058532G>A	uc002bej.3	-	19	3932	c.3721C>T	c.(3721-3723)CCC>TCC	p.P1241S	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1241					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GACAAAGGGGGCAGCGTGGAG	0.652													5	31					0	0	1	0	0	
BTBD1	53339	broad.mit.edu	37	15	83710649	83710649	+	Missense_Mutation	SNP	G	C	C	rs144730017		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:83710649G>C	uc002bjn.2	-	4	896	c.693C>G	c.(691-693)GAC>GAG	p.D231E	BTBD1_uc002bjo.2_Missense_Mutation_p.D231E	NM_025238	NP_079514	Q9H0C5	BTBD1_HUMAN	BTB (POZ) domain containing 1 isoform 1	231						cytoplasmic mRNA processing body|protein complex	protein binding			ovary(1)|central_nervous_system(1)	2				all cancers(203;0.000186)		TACTGAGTGTGTCTCTCTCTA	0.388													4	53					0	0	1	0	0	
HDGFRP3	50810	broad.mit.edu	37	15	83876145	83876145	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:83876145C>T	uc002bjs.1	-	1	177	c.22G>A	c.(22-24)GAG>AAG	p.E8K		NM_016073	NP_057157	Q9Y3E1	HDGR3_HUMAN	hepatoma-derived growth factor, related protein	8					cell proliferation	nucleus	growth factor activity				0						GCTTTGTACTCGCGGGGCCGC	0.612													4	11					0	0	1	0	0	
AKAP13	11214	broad.mit.edu	37	15	86278836	86278836	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:86278836C>T	uc002blv.1	+	32	7657	c.7487C>T	c.(7486-7488)ACG>ATG	p.T2496M	AKAP13_uc002blu.1_Missense_Mutation_p.T2500M|AKAP13_uc002blw.1_Missense_Mutation_p.T961M|AKAP13_uc002blx.1_Missense_Mutation_p.T741M	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2496	Interaction with ESR1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CTTAGGAGAACGGAATCAGAT	0.363													20	45					0	0	1	0	0	
NTRK3	4916	broad.mit.edu	37	15	88680633	88680633	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:88680633A>G	uc002bme.1	-	6	784	c.622_splice	c.e6+1	p.D208_splice	NTRK3_uc002bmh.2_Splice_Site_p.D208_splice|NTRK3_uc002bmf.1_Splice_Site_p.D208_splice|NTRK3_uc010upl.1_Splice_Site_p.D110_splice|NTRK3_uc010bnh.1_Splice_Site_p.D208_splice|NTRK3_uc002bmg.2_Splice_Site_p.D208_splice	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3						transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CCACTCACTCACCACACTGAC	0.597			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			9	22					0	0	1	0	0	
DET1	55070	broad.mit.edu	37	15	89074729	89074729	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:89074729G>A	uc002bmr.2	-	2	360	c.208C>T	c.(208-210)CGC>TGC	p.R70C	DET1_uc002bmp.3_Intron|DET1_uc010bnk.2_Intron|DET1_uc002bmq.2_Missense_Mutation_p.R81C	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	70						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			ATAAAGTAGCGTCCATCAGGT	0.473													27	90					0	0	1	0	0	
RHCG	51458	broad.mit.edu	37	15	90039599	90039599	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:90039599G>T	uc002bnz.2	-	1	201	c.177C>A	c.(175-177)CGC>CGA	p.R59R	RHCG_uc002boa.2_RNA|RHCG_uc010bnq.1_5'UTR	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	59	Extracellular (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					TACTTGGGTAGCGATAGTAGA	0.637													9	178					2.27111e-07	2.45417e-07	1	1	0	
MAN2A2	4122	broad.mit.edu	37	15	91462922	91462922	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:91462922T>G	uc010bnz.2	+	23	3473	c.3358T>G	c.(3358-3360)TTG>GTG	p.L1120V	MAN2A2_uc002bqc.2_Missense_Mutation_p.L1120V|MAN2A2_uc010uql.1_Missense_Mutation_p.L782V|MAN2A2_uc010uqm.1_Missense_Mutation_p.L699V|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1120					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GCCAACCTCCTTGACGTTACT	0.577													23	170					0	0	1	0	0	
TARSL2	123283	broad.mit.edu	37	15	102211872	102211872	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr15:102211872A>G	uc002bxm.2	-	14	1921	c.1866_splice	c.e14+1	p.K622_splice	TARSL2_uc002bxl.2_Splice_Site_p.K167_splice|TARSL2_uc010usi.1_Splice_Site	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2						threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGGTCGACTCACTTTAGGGCC	0.343													9	47					0	0	1	0	0	
SOX8	30812	broad.mit.edu	37	16	1035326	1035326	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:1035326C>T	uc002ckn.2	+	3	1396	c.1281C>T	c.(1279-1281)CCC>CCT	p.P427P		NM_014587	NP_055402	P57073	SOX8_HUMAN	SRY (sex determining region Y)-box 8	427					adipose tissue development|enteric nervous system development|fat cell differentiation|in utero embryonic development|metanephric nephron tubule formation|morphogenesis of a branching epithelium|negative regulation of apoptosis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|neural crest cell migration|oligodendrocyte differentiation|osteoblast differentiation|peripheral nervous system development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of gliogenesis|positive regulation of osteoblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone levels|renal vesicle induction|retinal rod cell differentiation|Sertoli cell development|signal transduction|spermatogenesis|ureter morphogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2		Hepatocellular(780;0.00308)				CCCTGCCGCCCGCCCACAGCC	0.736													3	14					0	0	1	0	0	
PRSS22	64063	broad.mit.edu	37	16	2903195	2903195	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:2903195C>T	uc002cry.1	-	6	919	c.853G>A	c.(853-855)GTG>ATG	p.V285M	PRSS22_uc002crz.1_Missense_Mutation_p.V175M	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	285	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						ATCTTCTCCACCCAGGAGCGG	0.736													7	56					0	0	1	0	0	
DNAJA3	9093	broad.mit.edu	37	16	4492299	4492299	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:4492299G>A	uc002cwk.2	+	5	686	c.661G>A	c.(661-663)GCA>ACA	p.A221T	DNAJA3_uc002cwl.2_Missense_Mutation_p.A221T|DNAJA3_uc010uxk.1_Missense_Mutation_p.A68T	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	221					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						CAATCAAGCTGCAAAGGGGGT	0.517													20	67					0	0	1	0	0	
MGRN1	23295	broad.mit.edu	37	16	4723651	4723651	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:4723651C>T	uc002cwz.2	+	10	1084	c.948C>T	c.(946-948)TGC>TGT	p.C316C	MGRN1_uc002cxa.2_Silent_p.C316C|MGRN1_uc010btx.2_Silent_p.C317C|MGRN1_uc010btw.2_Silent_p.C317C|MGRN1_uc002cxb.2_Silent_p.C355C|MGRN1_uc010uxo.1_Silent_p.C316C|MGRN1_uc010uxp.1_Silent_p.C316C|MGRN1_uc010uxq.1_RNA	NM_001142290	NP_001135762	O60291	MGRN1_HUMAN	mahogunin, ring finger 1 isoform 3	316	RING-type.				endosome to lysosome transport|negative regulation of cAMP-mediated signaling|negative regulation of G-protein coupled receptor protein signaling pathway|protein monoubiquitination	cytosol|early endosome|nucleus|plasma membrane|plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2						GCCCCATCTGCCGGCTGCGTG	0.662													10	41					0	0	1	0	0	
C16orf71	146562	broad.mit.edu	37	16	4787857	4787857	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:4787857T>C	uc002cxn.2	+	3	648	c.186T>C	c.(184-186)ATT>ATC	p.I62I		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	62										central_nervous_system(1)	1						CCTCCCTGATTCCAGACCTGT	0.582													4	61					0	0	1	0	0	
UBN1	29855	broad.mit.edu	37	16	4924265	4924265	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:4924265T>C	uc002cyb.2	+	15	2193	c.1854T>C	c.(1852-1854)GGT>GGC	p.G618G	UBN1_uc010uxw.1_Silent_p.G618G|UBN1_uc002cyc.2_Silent_p.G618G	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	618					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						GACAGATTGGTGGCCCCATTG	0.517													19	134					0	0	1	0	0	
PPL	5493	broad.mit.edu	37	16	4940285	4940285	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:4940285C>T	uc002cyd.1	-	18	2303	c.2213G>A	c.(2212-2214)GGC>GAC	p.G738D		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	738	Spectrin 4.|Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GTGGTCATGGCCGCGGTGGAA	0.597													3	45					0	0	1	0	0	
CPPED1	55313	broad.mit.edu	37	16	12758926	12758926	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:12758926A>G	uc002dca.3	-	4	873	c.762T>C	c.(760-762)GGT>GGC	p.G254G	CPPED1_uc002dcb.3_Silent_p.G112G|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	254							hydrolase activity|metal ion binding				0						TCTGGTAGGTACCCCCGGCAT	0.572													4	42					0	0	1	0	0	
ABCC6P1	653190	broad.mit.edu	37	16	18597253	18597253	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:18597253C>G	uc002dfg.2	+	7	817	c.617C>G	c.(616-618)GCC>GGC	p.A206G	ABCC6P1_uc010vam.1_Missense_Mutation_p.A149G	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						CGCAGTGCAGCCCGGGGGTAA	0.423													38	75					0	0	1	0	0	
METTL9	51108	broad.mit.edu	37	16	21666562	21666562	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:21666562G>T	uc002dje.2	+	5	965	c.766G>T	c.(766-768)GAG>TAG	p.E256*	uc002diq.3_Intron|METTL9_uc002djf.2_Nonsense_Mutation_p.E255*|IGSF6_uc002djg.1_5'Flank|IGSF6_uc010vbi.1_5'Flank	NM_016025	NP_057109	Q9H1A3	METL9_HUMAN	methyltransferase like 9 isoform 1	256										ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0759)		TGGCAAGTGGGAGAAACCATC	0.343													4	21					2.7689e-08	3.01486e-08	1	1	0	
MVP	9961	broad.mit.edu	37	16	29853066	29853066	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:29853066G>T	uc002dui.2	+	9	1425	c.1341G>T	c.(1339-1341)CAG>CAT	p.Q447H	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.Q447H|MVP_uc010vea.1_Missense_Mutation_p.Q41H	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	447	MVP 8.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AGAGCCTCCAGCCCTTGGCGC	0.647													3	20					0.004672	0.00481222	1	1	0	
CHD9	80205	broad.mit.edu	37	16	53296901	53296901	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:53296901G>A	uc002ehb.2	+	19	4376	c.4212G>A	c.(4210-4212)GCG>GCA	p.A1404A	CHD9_uc002egy.2_Silent_p.A1404A|CHD9_uc002ehc.2_Silent_p.A1404A|CHD9_uc002ehf.2_Silent_p.A518A|CHD9_uc002ehd.2_Silent_p.A930A	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	1404					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				TATTTCAGGCGAGTTTTGTGG	0.353													14	64					0	0	1	0	0	
IRX6	79190	broad.mit.edu	37	16	55362689	55362689	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:55362689G>A	uc002ehy.2	+	5	1332	c.799G>A	c.(799-801)GAG>AAG	p.E267K	IRX6_uc002ehx.2_Missense_Mutation_p.E267K	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	267						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						ggaggaggaggaggaagctga	0.502													4	54					0	0	1	0	0	
PDXDC2	283970	broad.mit.edu	37	16	70016342	70016342	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:70016342T>C	uc010vlq.1	-	4	538	c.360A>G	c.(358-360)AAA>AAG	p.K120K	CLEC18C_uc002exy.2_Intron|PDXDC2_uc002eyb.2_RNA|PDXDC2_uc002eyc.2_RNA					SubName: Full=Putative uncharacterized protein;												0						TAGCTTGAACTTTTGTTTCCG	0.388													7	54					0	0	1	0	0	
HYDIN	54768	broad.mit.edu	37	16	70902515	70902515	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:70902515G>A	uc002ezr.2	-	66	11393	c.11265C>T	c.(11263-11265)GAC>GAT	p.D3755D	HYDIN_uc010cfy.2_5'Flank	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3756										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTCTGGGTACGTCCACCCACT	0.527													13	29					0	0	1	0	0	
CHST4	10164	broad.mit.edu	37	16	71570602	71570602	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:71570602A>G	uc002fan.2	+	2	203	c.22A>G	c.(22-24)AAG>GAG	p.K8E	CHST4_uc002fao.2_Missense_Mutation_p.K8E	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	8	Helical; Signal-anchor for type II membrane protein; (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						TAAAAAAATGAAGCTCCTGCT	0.463													22	75					0	0	1	0	0	
MARVELD3	91862	broad.mit.edu	37	16	71668207	71668207	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:71668207A>G	uc002fat.2	+	3	770	c.707A>G	c.(706-708)TAC>TGC	p.Y236C	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	236	MARVEL.|Helical; (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				GGGGGCATTTACTACTATCAG	0.557													14	171					0	0	1	0	0	
ZFHX3	463	broad.mit.edu	37	16	72993579	72993579	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:72993579C>T	uc002fck.2	-	2	1139	c.466G>A	c.(466-468)GCC>ACC	p.A156T	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	156					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTCCCACAGGCGCCCCCGCCC	0.677													8	37					0	0	1	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77327097	77327097	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:77327097G>A	uc002ffc.3	-	20	3484	c.3065C>T	c.(3064-3066)GCC>GTC	p.A1022V	ADAMTS18_uc010chc.1_Missense_Mutation_p.A610V	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1022	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GGTTTCTGCGGCAGAGCCCTT	0.557													15	88					0	0	1	0	0	
CDH13	1012	broad.mit.edu	37	16	83704413	83704413	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:83704413G>A	uc002fgx.2	+	9	1240	c.1120G>A	c.(1120-1122)GAA>AAA	p.E374K	CDH13_uc010vns.1_Missense_Mutation_p.E421K|CDH13_uc010vnt.1_Missense_Mutation_p.E120K|CDH13_uc010vnu.1_Missense_Mutation_p.E335K	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	374	Cadherin 3.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		CACAGTCGAGGAAGGAGCTGT	0.443													10	32					0	0	1	0	0	
FANCA	2175	broad.mit.edu	37	16	89831352	89831352	+	Silent	SNP	G	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr16:89831352G>C	uc002fou.1	-	28	2766	c.2724C>G	c.(2722-2724)CTC>CTG	p.L908L	FANCA_uc010vpn.1_Silent_p.L908L|FANCA_uc010vpo.1_Silent_p.L37L	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	908					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		TCCAGAGAGAGAGGGCAGCTC	0.552			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				8	60					0	0	1	0	0	
SGSM2	9905	broad.mit.edu	37	17	2278838	2278838	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:2278838A>C	uc002fun.3	+	17	2193	c.2018A>C	c.(2017-2019)GAT>GCT	p.D673A	SGSM2_uc002fum.3_Missense_Mutation_p.D718A|SGSM2_uc010vqw.1_Missense_Mutation_p.D673A|SGSM2_uc002fup.1_5'UTR|SGSM2_uc002fuq.2_5'Flank	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	673	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		GACCCTGAAGATTCCAGACCA	0.622													4	68					0	0	1	0	0	
OR1G1	8390	broad.mit.edu	37	17	3030732	3030732	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:3030732C>T	uc002fvc.1	-	1	114	c.114G>A	c.(112-114)ACG>ACA	p.T38T		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCCTGCCACCGTGACCAAGT	0.512													35	52					0	0	1	0	0	
CAMKK1	84254	broad.mit.edu	37	17	3787183	3787183	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:3787183G>A	uc002fwt.2	-	4	551	c.457C>T	c.(457-459)CAC>TAC	p.H153Y	CAMKK1_uc002fwu.2_Missense_Mutation_p.H153Y|CAMKK1_uc002fwv.2_Missense_Mutation_p.H153Y	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	153	Protein kinase.				synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		CTCACATAGTGTCTGTCTTCA	0.572													6	29					0	0	1	0	0	
ZZEF1	23140	broad.mit.edu	37	17	3937503	3937503	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:3937503A>G	uc002fxe.2	-	40	6454	c.6390T>C	c.(6388-6390)AAT>AAC	p.N2130N	ZZEF1_uc002fxh.2_Silent_p.N444N|ZZEF1_uc002fxi.2_Silent_p.N365N|ZZEF1_uc002fxj.1_Silent_p.N743N	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2130							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGTAGGTTTCATTCAGGTGGC	0.542													16	74					0	0	1	0	0	
ALOX15	246	broad.mit.edu	37	17	4536510	4536510	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:4536510C>T	uc002fyh.2	-	10	1363	c.1349G>A	c.(1348-1350)CGG>CAG	p.R450Q	ALOX15_uc010vsd.1_Missense_Mutation_p.R411Q|ALOX15_uc010vse.1_Missense_Mutation_p.R472Q	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	450	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	CAGGAGCCCCCGGTCGGCCAA	0.602													20	27					0	0	1	0	0	
NLRP1	22861	broad.mit.edu	37	17	5424952	5424952	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:5424952G>A	uc002gci.2	-	13	4230	c.3675C>T	c.(3673-3675)GCC>GCT	p.A1225A	NLRP1_uc002gcg.1_Silent_p.A1229A|NLRP1_uc002gck.2_Silent_p.A1225A|NLRP1_uc002gcj.2_Silent_p.A1195A|NLRP1_uc002gcl.2_Silent_p.A1195A|NLRP1_uc002gch.3_Silent_p.A1225A	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1225					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TGAAGCGCAGGGCATTATGGA	0.552													5	52					0	0	1	0	0	
BCL6B	255877	broad.mit.edu	37	17	6930312	6930312	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:6930312A>C	uc002geg.2	+	8	1286	c.1229A>C	c.(1228-1230)AAG>ACG	p.K410T	BCL6B_uc010clt.1_Missense_Mutation_p.K411T	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	410						nucleus	zinc ion binding			skin(1)	1						ACCGGGGAGAAGCCCTACCCT	0.627													7	64					0	0	1	0	0	
TP53	7157	broad.mit.edu	37	17	7577130	7577130	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:7577130A>G	uc002gim.2	-	8	1002	c.808T>C	c.(808-810)TTT>CTT	p.F270L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.F270L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.F138L|TP53_uc010cng.1_Missense_Mutation_p.F138L|TP53_uc002gii.1_Missense_Mutation_p.F138L|TP53_uc010cnh.1_Missense_Mutation_p.F270L|TP53_uc010cni.1_Missense_Mutation_p.F270L|TP53_uc002gij.2_Missense_Mutation_p.F270L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	270	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		F -> L (in sporadic cancers; somatic mutation).|F -> Y (in sporadic cancers; somatic mutation).|F -> C (in sporadic cancers; somatic mutation).|F -> V (in sporadic cancers; somatic mutation).|F -> S (in sporadic cancers; somatic mutation).|F -> I (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.F270L(22)|p.F270C(15)|p.F270V(8)|p.0?(7)|p.F270S(7)|p.F270Y(5)|p.F270I(3)|p.?(2)|p.G266_E271delGRNSFE(2)|p.G262_F270delGNLLGRNSF(2)|p.F270fs*72(1)|p.S269fs*75(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.E258fs*71(1)|p.S269fs*34(1)|p.F270_D281del12(1)|p.S269_F270insX(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CGCACCTCAAAGCTGTTCCGT	0.537		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	16					0	0	1	0	0	
DNAH2	146754	broad.mit.edu	37	17	7722644	7722644	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:7722644A>G	uc002giu.1	+	71	10947	c.10933A>G	c.(10933-10935)AGC>GGC	p.S3645G	DNAH2_uc010cnm.1_Missense_Mutation_p.S583G	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3645					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTTTATTCTCAGCATTGACAA	0.522													5	64					0	0	1	0	0	
CHD3	1107	broad.mit.edu	37	17	7810228	7810228	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:7810228G>A	uc002gje.2	+	30	4695	c.4545G>A	c.(4543-4545)CCG>CCA	p.P1515P	CHD3_uc002gjd.2_Silent_p.P1574P|CHD3_uc002gjf.2_Silent_p.P1515P|CHD3_uc002gjh.2_Silent_p.P91P|CHD3_uc002gjj.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1515					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GGTCAATGCCGGAACTGATGC	0.587													22	124					0	0	1	0	0	
FLCN	201163	broad.mit.edu	37	17	17122405	17122405	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:17122405G>T	uc002gra.3	-	9	1494	c.990C>A	c.(988-990)TCC>TCA	p.S330S	PLD6_uc010cpn.2_Intron	NM_144997	NP_659434	Q8NFG4	FLCN_HUMAN	folliculin isoform 1	330					regulation of protein phosphorylation	cytoplasm|nucleus|plasma membrane	protein binding			thyroid(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)	3						CTGAGAGAGAGGAGGACTCTG	0.637									Birt-Hogg-Dub__syndrome|Familial_Non-VHL_Clear_Cell_Renal_Cancer				15	129					2.61681e-11	2.91588e-11	1	1	0	
SREBF1	6720	broad.mit.edu	37	17	17721095	17721095	+	Missense_Mutation	SNP	G	T	T	rs149397348		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:17721095G>T	uc002gru.1	-	7	1513	c.1319C>A	c.(1318-1320)CCC>CAC	p.P440H	SREBF1_uc002grp.1_Missense_Mutation_p.P10T|SREBF1_uc002grq.1_5'UTR|SREBF1_uc002grr.1_Missense_Mutation_p.P186H|SREBF1_uc002grs.1_Missense_Mutation_p.P416H|SREBF1_uc002grt.1_Missense_Mutation_p.P470H|SREBF1_uc010cpp.1_Missense_Mutation_p.P416H|SREBF1_uc010cpq.1_Missense_Mutation_p.P440H	NM_004176	NP_004167	P36956	SRBP1_HUMAN	sterol regulatory element binding transcription	440	Gly/Pro/Ser-rich.|Cytoplasmic (Potential).|Interaction with LMNA (By similarity).				cellular response to starvation|cholesterol metabolic process|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum|endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleus	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|sterol response element binding			skin(1)	1						AAGGGACAAGGGGCTGCTCTG	0.642													14	55					6.72482e-11	7.47396e-11	1	1	0	
NOS2	4843	broad.mit.edu	37	17	26097971	26097971	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:26097971A>G	uc002gzu.2	-	15	2041	c.1777T>C	c.(1777-1779)TTT>CTT	p.F593L	NOS2_uc010crh.1_Missense_Mutation_p.F593L|NOS2_uc010wab.1_Intron	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	593	Flavodoxin-like.				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	CCATTGCCAAACGTACTGGTC	0.602													5	26					0	0	1	0	0	
MYO1D	4642	broad.mit.edu	37	17	31048090	31048090	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:31048090G>A	uc002hho.1	-	15	1876	c.1864C>T	c.(1864-1866)CGT>TGT	p.R622C	MYO1D_uc002hhp.1_Missense_Mutation_p.R622C	NM_015194	NP_056009	O94832	MYO1D_HUMAN	myosin ID	622	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3			BRCA - Breast invasive adenocarcinoma(9;0.0362)			CCTGCCCGACGCACTCTCACA	0.453													36	145					0	0	1	0	0	
CCT6B	10693	broad.mit.edu	37	17	33269816	33269816	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:33269816T>G	uc002hig.2	-	6	818	c.724A>C	c.(724-726)ACA>CCA	p.T242P	CCT6B_uc010ctg.2_Intron|CCT6B_uc010wcc.1_Missense_Mutation_p.T197P	NM_006584	NP_006575	Q92526	TCPW_HUMAN	chaperonin containing TCP1, subunit 6B	242					chaperone-mediated protein complex assembly|protein folding|spermatogenesis	cytoplasm	ATP binding|protein transporter activity|unfolded protein binding			pancreas(1)	1		Ovarian(249;0.17)				AACACGCACGTTTTTTCATAT	0.338													5	17					0	0	1	0	0	
PIP4K2B	8396	broad.mit.edu	37	17	36940538	36940538	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:36940538T>C	uc002hqs.2	-	3	793	c.312A>G	c.(310-312)CGA>CGG	p.R104R	PIP4K2B_uc010wdt.1_Silent_p.R104R|PIP4K2B_uc010wdu.1_Silent_p.R40R	NM_003559	NP_003550	P78356	PI42B_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	104	PIPK.				cell surface receptor linked signaling pathway	endoplasmic reticulum membrane|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|receptor signaling protein activity			ovary(1)	1						CCCGAAGGTTTCGGAACACCA	0.498													9	50					0	0	1	0	0	
MED1	5469	broad.mit.edu	37	17	37564679	37564679	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:37564679G>T	uc002hrv.3	-	17	4007	c.3795C>A	c.(3793-3795)TCC>TCA	p.S1265S	MED1_uc010wee.1_Silent_p.S1093S|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1265	Ser-rich.|Interaction with TP53.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		ATGCCGTACAGGAATTAGATG	0.478										HNSCC(31;0.082)			6	89					0.0293803	0.0297619	1	1	0	
MED1	5469	broad.mit.edu	37	17	37565515	37565515	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:37565515C>T	uc002hrv.3	-	17	3171	c.2959G>A	c.(2959-2961)GGA>AGA	p.G987R	MED1_uc010wee.1_Missense_Mutation_p.G815R|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	987	Interaction with ESR1.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		CTGTCTAATCCGGGCCCCGAG	0.502										HNSCC(31;0.082)			5	38					0	0	1	0	0	
CDK12	51755	broad.mit.edu	37	17	37687432	37687432	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:37687432G>T	uc010cvv.2	+	14	4922	c.4336G>T	c.(4336-4338)GGA>TGA	p.G1446*	CDK12_uc002hrw.3_Nonsense_Mutation_p.G1437*	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1446					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						GCTGGGGCCAGGAACCACTGG	0.577										TCGA Ovarian(9;0.13)			5	83					0.184627	0.184627	1	1	0	
KLHL10	317719	broad.mit.edu	37	17	40001522	40001522	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:40001522T>C	uc010cxr.2	+	3	971	c.829T>C	c.(829-831)TCT>CCT	p.S277P	KLHL10_uc010wfv.1_Missense_Mutation_p.S271P|KLHL10_uc010wfw.1_Missense_Mutation_p.S189P	NM_152467	NP_689680	Q6JEL2	KLH10_HUMAN	kelch-like 10	277						cytoplasm				ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		Breast(137;0.000162)				ACCCTCTAATTCTGATTTCAC	0.483													24	70					0	0	1	0	0	
TMUB2	79089	broad.mit.edu	37	17	42266499	42266499	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:42266499T>C	uc002ifo.2	+	3	302	c.145T>C	c.(145-147)TTG>CTG	p.L49L	C17orf65_uc002ifn.2_5'Flank|TMUB2_uc002ifp.2_Silent_p.L29L|TMUB2_uc010wiu.1_Silent_p.L29L|TMUB2_uc002ifq.2_Silent_p.L49L|TMUB2_uc002ifr.2_Silent_p.L29L|TMUB2_uc002ifs.2_Intron|TMUB2_uc002ift.2_Silent_p.L29L|TMUB2_uc002ifu.2_Silent_p.L29L|TMUB2_uc002ifv.2_Silent_p.L29L|TMUB2_uc002ifw.1_Silent_p.L29L|TMUB2_uc002ifx.2_Silent_p.L29L|TMUB2_uc002ify.2_RNA	NM_001076674	NP_001070142	Q71RG4	TMUB2_HUMAN	transmembrane and ubiquitin-like domain	49	Helical; (Potential).					integral to membrane				lung(1)	1		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		GATTCTAGCCTTGGTCCTAGC	0.587													5	103					0	0	1	0	0	
FZD2	2535	broad.mit.edu	37	17	42635342	42635342	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:42635342T>C	uc002igx.1	+	1	418	c.286T>C	c.(286-288)TAC>CAC	p.Y96H		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	96	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GTGCTCCATGTACGCACCCGT	0.637													11	90					0	0	1	0	0	
ADAM11	4185	broad.mit.edu	37	17	42849123	42849123	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:42849123G>T	uc002ihh.2	+	6	468	c.468_splice	c.e6-1	p.H156_splice	ADAM11_uc010wjd.1_Splice_Site	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein						integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				TCTCTCCACAGTGGGGTCTTC	0.657													12	48					3.07112e-06	3.29377e-06	1	1	0	
KIF18B	146909	broad.mit.edu	37	17	43005672	43005672	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:43005672G>T	uc010wji.1	-	13	2108	c.2007C>A	c.(2005-2007)ACC>ACA	p.T669T	KIF18B_uc002iht.2_Silent_p.T678T|KIF18B_uc010wjh.1_Silent_p.T666T	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GTGAAGGTTGGGTGTCAGGCA	0.657													4	18					0.014758	0.0150206	1	1	0	
HOXB4	3214	broad.mit.edu	37	17	46654092	46654092	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:46654092C>T	uc002inp.2	-	2	810	c.748G>A	c.(748-750)GCG>ACG	p.A250T	HOXB3_uc010wlm.1_Intron|HOXB3_uc010dbf.2_Intron|HOXB3_uc010dbg.2_Intron|HOXB3_uc002ino.2_5'Flank|HOXB3_uc010wlk.1_5'Flank|HOXB3_uc010wll.1_Intron	NM_024015	NP_076920	P17483	HXB4_HUMAN	homeobox B4	250						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CACTAGAGCGCGCGGGGGCCT	0.721													5	15					0	0	1	0	0	
UTP18	51096	broad.mit.edu	37	17	49346264	49346264	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:49346264T>A	uc002its.2	+	4	670	c.621T>A	c.(619-621)GAT>GAA	p.D207E		NM_016001	NP_057085	Q9Y5J1	UTP18_HUMAN	UTP18, small subunit processome component	207					rRNA processing	nucleolus					0			BRCA - Breast invasive adenocarcinoma(22;2.09e-07)			CATCTTCAGATGGTGAGCGTT	0.378													6	47					0	0	1	0	0	
HLF	3131	broad.mit.edu	37	17	53398104	53398104	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:53398104A>G	uc002iug.1	+	4	1277	c.752A>G	c.(751-753)AAC>AGC	p.N251S	HLF_uc010dce.1_Missense_Mutation_p.N166S|HLF_uc002iuh.2_Missense_Mutation_p.N166S|HLF_uc010wni.1_Missense_Mutation_p.N198S	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	251					multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						CTGAAAGAGAACCAGATCGCC	0.577			T	TCF3	ALL								4	39					0	0	1	0	0	
TRIM37	4591	broad.mit.edu	37	17	57168701	57168701	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:57168701G>A	uc002iwy.3	-	3	568	c.124C>T	c.(124-126)CGC>TGC	p.R42C	TRIM37_uc002iwz.3_Missense_Mutation_p.R42C|TRIM37_uc002ixa.3_5'UTR|TRIM37_uc010woc.1_Missense_Mutation_p.R8C	NM_001005207	NP_001005207	O94972	TRI37_HUMAN	tripartite motif-containing 37 protein	42	RING-type; degenerate.					perinuclear region of cytoplasm|peroxisome	ligase activity|protein binding|zinc ion binding			lung(2)|pancreas(2)|ovary(1)|skin(1)|breast(1)	7	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					GTCAGCCAGCGCTAAGGGGGC	0.284									Mulibrey_Nanism				30	46					0	0	1	0	0	
DHX40	79665	broad.mit.edu	37	17	57644096	57644096	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:57644096T>G	uc002ixn.1	+	2	368	c.221T>G	c.(220-222)GTT>GGT	p.V74G	DHX40_uc010woe.1_Intron|DHX40_uc002ixo.1_5'UTR	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	74	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TTCCTTATTGTTACTGGAAAT	0.343													3	48					0	0	1	0	0	
MED13	9969	broad.mit.edu	37	17	60107230	60107230	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:60107230A>G	uc002izo.2	-	7	1231	c.1154T>C	c.(1153-1155)ATG>ACG	p.M385T	MED13_uc002izp.2_Missense_Mutation_p.M1T	NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	385					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TGCTCTGTTCATATTGCATTC	0.338													7	95					0	0	1	0	0	
PSMC5	5705	broad.mit.edu	37	17	61907726	61907726	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:61907726G>A	uc002jcb.2	+	6	458	c.417G>A	c.(415-417)ATG>ATA	p.M139I	FTSJ3_uc002jca.2_5'Flank|PSMC5_uc010ddy.2_Missense_Mutation_p.M116I|PSMC5_uc010ddz.2_Missense_Mutation_p.M60I|PSMC5_uc002jcc.2_Missense_Mutation_p.M131I|PSMC5_uc002jcd.2_Missense_Mutation_p.M131I	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	139					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						CACTGATGATGGTGGAGAAAG	0.483													10	64					0	0	1	0	0	
PSMC5	5705	broad.mit.edu	37	17	61908549	61908549	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:61908549A>C	uc002jcb.2	+	8	874	c.833A>C	c.(832-834)AAC>ACC	p.N278T	PSMC5_uc010ddy.2_Missense_Mutation_p.N255T|PSMC5_uc010ddz.2_Missense_Mutation_p.N199T|PSMC5_uc002jcc.2_Missense_Mutation_p.N270T|PSMC5_uc002jcd.2_Missense_Mutation_p.N270T	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	278					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						GAGTTGCTCAACCAGCTCGAC	0.597													8	123					0	0	1	0	0	
CSHL1	1444	broad.mit.edu	37	17	61988131	61988131	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:61988131T>G	uc002jda.1	-	2	226	c.164A>C	c.(163-165)CAG>CCG	p.Q55P	CSHL1_uc002jcz.1_Missense_Mutation_p.Q55P|CSHL1_uc002jdb.1_Intron|CSHL1_uc002jdc.1_Intron|CSHL1_uc002jdd.1_Intron|CSHL1_uc002jde.2_Missense_Mutation_p.Q83P|CSHL1_uc002jdf.2_Intron|CSHL1_uc002jdg.2_Missense_Mutation_p.Q55P|CSHL1_uc002jdh.2_Intron	NM_022579	NP_072101	Q14406	CSHL_HUMAN	chorionic somatomammotropin hormone-like 1	55						extracellular region	hormone activity|metal ion binding				0						TATAAACTCCTGGTAGGTGTC	0.557													8	220					0	0	1	0	0	
SDK2	54549	broad.mit.edu	37	17	71386527	71386527	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:71386527C>A	uc010dfm.2	-	29	4091	c.4091G>T	c.(4090-4092)GGC>GTC	p.G1364V	SDK2_uc002jjt.3_Missense_Mutation_p.G523V|SDK2_uc010dfn.2_Missense_Mutation_p.G1043V	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1364	Fibronectin type-III 8.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TGGCTTGAGGCCCGTGGCTGT	0.647													4	22					0.00909568	0.00930166	1	1	0	
UNK	85451	broad.mit.edu	37	17	73806045	73806045	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:73806045C>T	uc002jpm.2	+	3	537	c.537C>T	c.(535-537)GGC>GGT	p.G179G		NM_001080419	NP_001073888	Q9C0B0	UNK_HUMAN	zinc finger CCCH-type domain containing 5	103	C3H1-type 1.						nucleic acid binding|zinc ion binding				0			all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCCGGAGGGCGACGAGTGAG	0.647													6	76					0	0	1	0	0	
FOXJ1	2302	broad.mit.edu	37	17	74136102	74136102	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:74136102C>T	uc002jqw.2	-	1	465	c.375G>A	c.(373-375)TCG>TCA	p.S125S	FOXJ1_uc002jqx.2_Silent_p.S125S|uc002jqy.1_5'Flank	NM_001454	NP_001445	Q92949	FOXJ1_HUMAN	forkhead box J1	125	Fork-head.				actin cytoskeleton organization|activation of Rho GTPase activity|central tolerance induction|cilium assembly|epithelial cell differentiation|establishment of apical/basal cell polarity|heart looping|humoral immune response|left/right pattern formation|leukocyte migration|lung development|negative regulation of B cell activation|negative regulation of germinal center formation|negative regulation of humoral immune response mediated by circulating immunoglobulin|negative regulation of interleukin-6 biosynthetic process|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell differentiation in thymus|negative regulation of T cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of central B cell tolerance induction|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			pancreas(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			GCGTGGCATACGAGTAGGGAG	0.647													7	45					0	0	1	0	0	
RHBDF2	79651	broad.mit.edu	37	17	74473803	74473803	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:74473803G>A	uc002jrq.1	-	7	1117	c.824C>T	c.(823-825)CCG>CTG	p.P275L	RHBDF2_uc002jrp.1_Missense_Mutation_p.P246L|RHBDF2_uc002jrr.1_Missense_Mutation_p.P127L|RHBDF2_uc010wtf.1_Missense_Mutation_p.P246L|RHBDF2_uc002jrs.1_Missense_Mutation_p.P270L	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	275	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						CAGGAAGCTCGGGAAGGCAAA	0.622													14	104					0	0	1	0	0	
USP36	57602	broad.mit.edu	37	17	76799589	76799589	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:76799589C>T	uc002jvz.1	-	16	3013	c.2688G>A	c.(2686-2688)GTG>GTA	p.V896V	USP36_uc002jwa.1_Silent_p.V896V|USP36_uc002jwb.1_Silent_p.V508V|USP36_uc002jwc.1_Silent_p.V596V|USP36_uc002jvy.1_5'Flank	NM_025090	NP_079366	Q9P275	UBP36_HUMAN	ubiquitin specific peptidase 36	896					ubiquitin-dependent protein catabolic process	nucleolus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(99;0.000842)|OV - Ovarian serous cystadenocarcinoma(97;0.151)			GCTGGCCATTCACCTGTGGCT	0.637													16	124					0	0	1	0	0	
BAHCC1	57597	broad.mit.edu	37	17	79429898	79429898	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:79429898A>G	uc002kaf.2	+	25	7516	c.7516A>G	c.(7516-7518)ATC>GTC	p.I2506V		NM_001080519	NP_001073988	Q9P281	BAHC1_HUMAN	BAH domain and coiled-coil containing 1	2506	BAH.						DNA binding			ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0224)|OV - Ovarian serous cystadenocarcinoma(97;0.116)			CATCGGCCGCATCGAGAGCAT	0.637													6	80					0	0	1	0	0	
SLC16A3	9123	broad.mit.edu	37	17	80195437	80195437	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:80195437C>T	uc002kea.2	+	4	930	c.791C>T	c.(790-792)GCC>GTC	p.A264V	SLC16A3_uc002kee.2_Missense_Mutation_p.A264V|SLC16A3_uc002keb.2_Missense_Mutation_p.A264V|SLC16A3_uc002kec.2_Missense_Mutation_p.A264V|SLC16A3_uc002ked.2_Missense_Mutation_p.A264V	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	264	Extracellular (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	ACCAAGGCCGCCTTCCTGCTC	0.687													20	41					0	0	1	0	0	
WDR45L	56270	broad.mit.edu	37	17	80579670	80579670	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr17:80579670A>G	uc002kfq.2	-	6	628	c.433T>C	c.(433-435)TGT>CGT	p.C145R	WDR45L_uc002kfr.2_RNA	NM_019613	NP_062559	Q5MNZ6	WIPI3_HUMAN	WDR45-like	145					autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1	Breast(20;0.00106)|all_neural(118;0.0952)	all_cancers(8;0.101)|all_epithelial(8;0.198)	BRCA - Breast invasive adenocarcinoma(99;0.0262)|OV - Ovarian serous cystadenocarcinoma(97;0.0835)			CAAAGGACACAGAGGCCTGCG	0.542													9	25					0	0	1	0	0	
YES1	7525	broad.mit.edu	37	18	747955	747955	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:747955A>G	uc002kky.2	-	4	656	c.435T>C	c.(433-435)AAT>AAC	p.N145N	YES1_uc002kkz.2_Silent_p.N145N	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1	145	SH3.				blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	GCGCTACATAATTGCTCGGGA	0.388													29	189					0	0	1	0	0	
ABHD3	171586	broad.mit.edu	37	18	19282376	19282376	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:19282376C>T	uc002ktl.2	-	3	550	c.410G>A	c.(409-411)AGC>AAC	p.S137N	ABHD3_uc002ktm.2_Missense_Mutation_p.S137N|ABHD3_uc010xao.1_RNA|MIB1_uc002ktp.2_5'Flank|ABHD3_uc002kto.2_Missense_Mutation_p.S137N	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	137						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						AGGTCTGGTGCTGGCATCCAT	0.398													6	59					0	0	1	0	0	
GATA6	2627	broad.mit.edu	37	18	19751448	19751448	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:19751448T>C	uc002ktt.1	+	2	608	c.343T>C	c.(343-345)TTC>CTC	p.F115L	GATA6_uc002ktu.1_Missense_Mutation_p.F115L	NM_005257	NP_005248	Q92908	GATA6_HUMAN	GATA binding protein 6	115					blood coagulation|cardiac vascular smooth muscle cell differentiation|cellular response to hypoxia|intestinal epithelial cell differentiation|male gonad development|negative regulation of apoptosis|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor-beta1 production|negative regulation of transforming growth factor-beta2 production|outflow tract septum morphogenesis|positive regulation of angiogenesis|positive regulation of cell cycle arrest|positive regulation of transcription from RNA polymerase II promoter|response to drug|response to growth factor stimulus		protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(3)	3	all_cancers(21;0.00271)|all_epithelial(16;7.31e-05)|Ovarian(2;0.116)|Lung NSC(20;0.123)|all_lung(20;0.246)		STAD - Stomach adenocarcinoma(5;0.106)			CTTGCTGCTGTTCACTGACCT	0.692													7	29					0	0	1	0	0	
C18orf8	29919	broad.mit.edu	37	18	21107837	21107837	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:21107837A>G	uc010xax.1	+	15	1389	c.1268A>G	c.(1267-1269)TAC>TGC	p.Y423C	C18orf8_uc002kul.2_RNA|C18orf8_uc010xay.1_Missense_Mutation_p.Y47C	NM_013326	NP_037458	Q96DM3	MIC1_HUMAN	colon cancer-associated protein Mic1	423										ovary(1)	1	all_cancers(21;0.000122)|all_epithelial(16;8.08e-07)|Lung NSC(20;0.00206)|all_lung(20;0.00659)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TATAAAAAGTACCTGGATGCC	0.463													4	35					0	0	1	0	0	
DSC1	1823	broad.mit.edu	37	18	28711638	28711638	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:28711638G>A	uc002kwn.2	-	15	2668	c.2406C>T	c.(2404-2406)TCC>TCT	p.S802S	DSC1_uc002kwm.2_Silent_p.S802S|uc002kwo.1_RNA	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	802	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			CTCCCTTGACGGACTCCAAGG	0.512													5	109					0	0	1	0	0	
SMAD4	4089	broad.mit.edu	37	18	48591919	48591919	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:48591919G>A	uc010xdp.1	+	9	1620	c.1082G>A	c.(1081-1083)CGC>CAC	p.R361H	SMAD4_uc002lfb.3_Missense_Mutation_p.R206H	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	361	MH2.		R -> H (in a colorectal cancer sample; somatic mutation).|R -> C (in JPS).		BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.R361C(6)|p.R361H(3)|p.?(2)|p.R361S(1)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		GGAGGAGATCGCTTTTGTTTG	0.413									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				14	51					0	0	1	0	0	
ZNF532	55205	broad.mit.edu	37	18	56620958	56620958	+	Missense_Mutation	SNP	C	T	T	rs144779931		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:56620958C>T	uc002lho.2	+	8	3624	c.3077C>T	c.(3076-3078)ACG>ATG	p.T1026M	ZNF532_uc002lhp.2_Missense_Mutation_p.T1024M|ZNF532_uc010xeg.1_Missense_Mutation_p.T1024M|ZNF532_uc002lhr.2_Missense_Mutation_p.T1024M|ZNF532_uc002lhs.2_Missense_Mutation_p.T1024M|ZNF532_uc010xeh.1_Missense_Mutation_p.T118M	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	1026	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CCTGGGTGGACGTGTTGGGAG	0.468													14	117					0	0	1	0	0	
CBLN2	147381	broad.mit.edu	37	18	70209167	70209167	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr18:70209167C>T	uc002lku.2	-	2	464	c.229G>A	c.(229-231)GCC>ACC	p.A77T	CBLN2_uc002lkv.2_Missense_Mutation_p.A77T	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	77						integral to membrane					0		Esophageal squamous(42;0.131)				GAGGTGACGGCGCCGTCCGCC	0.711													6	9					0	0	1	0	0	
TJP3	27134	broad.mit.edu	37	19	3738575	3738575	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:3738575A>G	uc010xhv.1	+	11	1406	c.1406A>G	c.(1405-1407)AAC>AGC	p.N469S	TJP3_uc010xhs.1_Missense_Mutation_p.N436S|TJP3_uc010xht.1_Missense_Mutation_p.N400S|TJP3_uc010xhu.1_Missense_Mutation_p.N445S|TJP3_uc010xhw.1_Missense_Mutation_p.N455S	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	450	PDZ 3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CCATTCCAGAACCTGACACGG	0.587													9	120					0	0	1	0	0	
EEF2	1938	broad.mit.edu	37	19	3976713	3976713	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:3976713C>T	uc002lze.2	-	15	2499	c.2416G>A	c.(2416-2418)GGC>AGC	p.G806S		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	806						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		AACGCCTGGCCGCCCGTGTTG	0.652													3	7					0	0	1	0	0	
TUBB4	10382	broad.mit.edu	37	19	6495703	6495703	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:6495703G>A	uc002mfg.1	-	4	914	c.807C>T	c.(805-807)GGC>GGT	p.G269G	TUBB4_uc002mff.1_Silent_p.G197G|MIR220B_hsa-mir-220b|MI0005529_5'Flank	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	269				G -> A (in Ref. 1; CAA25318).	'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		GGGGTGCGAAGCCGGGCATGA	0.657													4	75					0	0	1	0	0	
SH2D3A	10045	broad.mit.edu	37	19	6754871	6754871	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:6754871C>T	uc002mft.2	-	5	1146	c.952G>A	c.(952-954)GCC>ACC	p.A318T	SH2D3A_uc010xjg.1_Missense_Mutation_p.A196T	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	318					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						AGGTGAAGGGCGGTGCTCCCA	0.637													7	70					0	0	1	0	0	
KIAA1543	57662	broad.mit.edu	37	19	7676871	7676871	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:7676871T>C	uc002mgv.3	+	11	1593	c.1492T>C	c.(1492-1494)TCC>CCC	p.S498P	KIAA1543_uc002mgu.3_Missense_Mutation_p.S525P|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	498	Pro-rich.				epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						ATCCCTGGCCTCCCCCTACCT	0.667													3	49					0	0	1	0	0	
OR7E24	26648	broad.mit.edu	37	19	9362606	9362606	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:9362606A>G	uc002mlb.1	+	1	887	c.887A>G	c.(886-888)TAC>TGC	p.Y296C		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	296	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCAGTGATGTACACTGTGGTC	0.498													7	50					0	0	1	0	0	
DNMT1	1786	broad.mit.edu	37	19	10249186	10249186	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:10249186G>A	uc002mng.2	-	34	4176	c.3996C>T	c.(3994-3996)CAC>CAT	p.H1332H	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Silent_p.H256H|DNMT1_uc010xlc.1_Silent_p.H1348H|DNMT1_uc002mnh.2_Silent_p.H1227H|DNMT1_uc010xld.1_Silent_p.H1332H	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1332	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	GAGCAAACACGTGCAGTGGCT	0.647													8	77					0	0	1	0	0	
S1PR2	9294	broad.mit.edu	37	19	10335474	10335474	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:10335474G>A	uc002mnl.2	-	2	219	c.108C>T	c.(106-108)GCC>GCT	p.A36A		NM_004230	NP_004221	O95136	S1PR2_HUMAN	endothelial differentiation, sphingolipid	36	Helical; Name=1; (By similarity).				activation of MAPK activity|positive regulation of cell proliferation	integral to membrane|plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			lung(1)|central_nervous_system(1)	2						TGAAGGCCGAGGCCACCTGGC	0.552													23	171					0	0	1	0	0	
SMARCA4	6597	broad.mit.edu	37	19	11097671	11097671	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:11097671G>T	uc002mqf.3	+	5	1135	c.851G>T	c.(850-852)TGG>TTG	p.W284L	SMARCA4_uc010dxp.2_Missense_Mutation_p.W284L|SMARCA4_uc010dxo.2_Missense_Mutation_p.W284L|SMARCA4_uc002mqg.1_Missense_Mutation_p.W284L|SMARCA4_uc010dxq.2_Missense_Mutation_p.W284L|SMARCA4_uc010dxr.2_Missense_Mutation_p.W284L|SMARCA4_uc002mqj.3_Missense_Mutation_p.W284L|SMARCA4_uc010dxs.2_Missense_Mutation_p.W284L|SMARCA4_uc002mqe.2_Missense_Mutation_p.W284L	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	284					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CCCAAGCCCTGGCCTGAAGGT	0.637			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				7	37					5.4927e-09	6.01115e-09	1	1	0	
ZNF709	163051	broad.mit.edu	37	19	12576221	12576221	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:12576221T>C	uc002mtv.3	-	4	676	c.515A>G	c.(514-516)CAG>CGG	p.Q172R	ZNF709_uc002mtw.3_Missense_Mutation_p.Q140R|ZNF709_uc002mtx.3_Missense_Mutation_p.Q172R	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	172	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTACCACACTGTTTACATTT	0.388													5	65					0	0	1	0	0	
ZNF490	57474	broad.mit.edu	37	19	12692000	12692000	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:12692000C>T	uc002mtz.2	-	5	1018	c.889G>A	c.(889-891)GAA>AAA	p.E297K		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	297	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGAGTCCTTTCGTGGGTTAGA	0.428													10	64					0	0	1	0	0	
HOOK2	29911	broad.mit.edu	37	19	12883842	12883842	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:12883842A>G	uc002muy.2	-	4	392	c.221T>C	c.(220-222)ATG>ACG	p.M74T	HOOK2_uc002muz.2_Missense_Mutation_p.M74T	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	74	Sufficient for interaction with microtubules.|Required for localization to the centrosome and induction of aggresome formation.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						CCGTAAGACCATCTTCAGATT	0.532													6	88					0	0	1	0	0	
NOTCH3	4854	broad.mit.edu	37	19	15300208	15300208	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:15300208G>T	uc002nan.2	-	7	1144	c.1068C>A	c.(1066-1068)GTC>GTA	p.V356V	NOTCH3_uc002nao.1_Silent_p.V356V	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	356	Extracellular (Potential).|EGF-like 9.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AGGGGTTGCTGACACAGGCGT	0.597													4	63					0.000602214	0.000630122	1	1	0	
COPE	11316	broad.mit.edu	37	19	19030060	19030060	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:19030060T>C	uc002nkk.2	-	1	140	c.98A>G	c.(97-99)CAG>CGG	p.Q33R	COPE_uc002nkl.2_Missense_Mutation_p.Q33R|COPE_uc002nkm.2_Missense_Mutation_p.Q33R|COPE_uc002nkn.2_Missense_Mutation_p.Q33R|HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkq.1_5'Flank|DDX49_uc002nkr.1_5'Flank|DDX49_uc002nks.1_5'Flank|DDX49_uc002nkt.1_5'Flank	NM_007263	NP_009194	O14579	COPE_HUMAN	epsilon subunit of coatomer protein complex	33					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol	binding|structural molecule activity				0						GTTTATGCACTGCTGGTAGCT	0.716													8	54					0	0	1	0	0	
SFRS14	10147	broad.mit.edu	37	19	19136068	19136068	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:19136068A>G	uc002nkx.2	-	3	1235	c.1089T>C	c.(1087-1089)GCT>GCC	p.A363A	SFRS14_uc002nkz.1_Silent_p.A377A|SFRS14_uc002nla.1_Silent_p.A363A|SFRS14_uc002nlb.2_Silent_p.A363A|SFRS14_uc010xqk.1_Silent_p.A132A	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	363					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CAAGCATTTTAGCACAGGTTT	0.338													10	61					0	0	1	0	0	
ZNF98	148198	broad.mit.edu	37	19	22585671	22585671	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:22585671T>G	uc002nqt.2	-	3	295	c.173A>C	c.(172-174)AAG>ACG	p.K58T		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	58	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				CAGGTCTGGCTTAGAGGCAGC	0.398													15	67					0	0	1	0	0	
ZNF536	9745	broad.mit.edu	37	19	30934931	30934931	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:30934931C>T	uc002nsu.1	+	2	600	c.462C>T	c.(460-462)GGC>GGT	p.G154G	ZNF536_uc010edd.1_Silent_p.G154G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	154					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGCACACGGGCGAGAAGCCCT	0.642													5	52					0	0	1	0	0	
ZNF599	148103	broad.mit.edu	37	19	35251333	35251333	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:35251333C>T	uc010edn.1	-	4	761	c.373G>A	c.(373-375)GAA>AAA	p.E125K	ZNF599_uc010edm.1_Missense_Mutation_p.E88K	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			ATTAGCTTTTCCTCATCTCTA	0.453													24	113					0	0	1	0	0	
MAG	4099	broad.mit.edu	37	19	35786697	35786697	+	Silent	SNP	G	A	A	rs142334011	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:35786697G>A	uc002nyy.1	+	4	377	c.228G>A	c.(226-228)TCG>TCA	p.S76S	MAG_uc002nyx.1_Silent_p.S76S|MAG_uc010eds.1_Silent_p.S51S|MAG_uc002nyz.1_Silent_p.S76S	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	76	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TCTTCAAGTCGCGCACCCAAG	0.642													36	127					0	0	1	0	0	
FFAR2	2867	broad.mit.edu	37	19	35940885	35940885	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:35940885A>G	uc002nzg.2	+	2	349	c.269A>G	c.(268-270)TAC>TGC	p.Y90C	FFAR2_uc010eea.2_Missense_Mutation_p.Y90C	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	90	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			TTTGGCTTCTACAGCAGCATC	0.622													3	20					0	0	1	0	0	
ZNF829	374899	broad.mit.edu	37	19	37398892	37398892	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:37398892T>C	uc002ofa.1	-	5	620	c.258A>G	c.(256-258)TTA>TTG	p.L86L	ZNF345_uc002oez.2_Intron|ZNF829_uc002ofb.2_Silent_p.L86L	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	86	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTTGTTCCAATAAGGAGATCA	0.478													8	42					0	0	1	0	0	
ZNF180	7733	broad.mit.edu	37	19	44981523	44981523	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:44981523C>T	uc002ozf.3	-	5	1457	c.1175G>A	c.(1174-1176)CGG>CAG	p.R392Q	ZNF180_uc002ozh.3_Missense_Mutation_p.R49Q|ZNF180_uc002ozi.3_Missense_Mutation_p.R365Q|ZNF180_uc002ozg.3_Missense_Mutation_p.R391Q|ZNF180_uc010ejm.2_Missense_Mutation_p.R367Q	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	392	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				GTGCGAGCTCCGGCTGAAGGA	0.458													14	63					0	0	1	0	0	
OPA3	80207	broad.mit.edu	37	19	46056830	46056830	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:46056830G>A	uc002pck.3	-	2	582	c.482C>T	c.(481-483)GCC>GTC	p.A161V	OPA3_uc002pcj.3_Intron|OPA3_uc010xxk.1_Missense_Mutation_p.A108V	NM_025136	NP_079412	Q9H6K4	OPA3_HUMAN	OPA3 protein isoform b	161	Potential.				response to stimulus|visual perception	mitochondrion					0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00778)|GBM - Glioblastoma multiforme(486;0.0976)|Epithelial(262;0.242)		GCAGAGCTGGGCGCGCACCTC	0.657													10	71					0	0	1	0	0	
FBXO46	23403	broad.mit.edu	37	19	46215158	46215158	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:46215158C>T	uc002pcy.2	-	2	1721	c.1596G>A	c.(1594-1596)CAG>CAA	p.Q532Q	FBXO46_uc002pcz.2_Silent_p.Q532Q	NM_001080469	NP_001073938	Q6PJ61	FBX46_HUMAN	F-box protein 46	532							protein binding			ovary(1)|lung(1)|breast(1)	3		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00568)|GBM - Glioblastoma multiforme(486;0.0844)|Epithelial(262;0.201)		TCTTGCGGCACTGTTTGCACG	0.627													6	32					0	0	1	0	0	
RSPH6A	81492	broad.mit.edu	37	19	46318382	46318382	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:46318382C>T	uc002pdm.2	-	1	196	c.53G>A	c.(52-54)CGG>CAG	p.R18Q		NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	18						intracellular				ovary(1)|central_nervous_system(1)	2						AGAAGTCCTCCGGCCCGGAGG	0.672													7	31					0	0	1	0	0	
MYPOP	339344	broad.mit.edu	37	19	46393902	46393902	+	Silent	SNP	G	A	A	rs138971632		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:46393902G>A	uc002pdt.2	-	3	1266	c.1179C>T	c.(1177-1179)CGC>CGT	p.R393R		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	393	Nuclear localization signal (By similarity).					nucleus	DNA binding				0						TCCATCGGCCGCGCCTTTTCC	0.652													8	57					0	0	1	0	0	
PTGIR	5739	broad.mit.edu	37	19	47124717	47124717	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:47124717G>T	uc002pex.2	-	3	1094	c.981C>A	c.(979-981)GCC>GCA	p.A327A		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	327	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	TCCTCCCTGAGGCGAGCTGGG	0.667													4	51					1.23904e-05	1.32391e-05	1	1	0	
EHD2	30846	broad.mit.edu	37	19	48244374	48244374	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:48244374C>T	uc002phj.3	+	6	1567	c.1317C>T	c.(1315-1317)GAC>GAT	p.D439D	EHD2_uc010xyu.1_Silent_p.D303D|EHD2_uc010xyv.1_Silent_p.D122D	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	439					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		AGGGCTCGGACGACGAGGCCG	0.657													11	55					0	0	1	0	0	
CCDC114	93233	broad.mit.edu	37	19	48801351	48801351	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:48801351A>G	uc002pir.2	-	12	1980	c.1297T>C	c.(1297-1299)TTC>CTC	p.F433L	CCDC114_uc002piq.2_Missense_Mutation_p.F242L|CCDC114_uc002pio.2_Missense_Mutation_p.F470L|CCDC114_uc002pis.1_Missense_Mutation_p.F113L	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	433										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		AGGGAGGTGAAGCTCTGGAGA	0.677													5	50					0	0	1	0	0	
PPFIA3	8541	broad.mit.edu	37	19	49651942	49651942	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:49651942A>C	uc002pmr.2	+	25	3363	c.3031A>C	c.(3031-3033)ATT>CTT	p.I1011L	PPFIA3_uc010yai.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.I870L|PPFIA3_uc002pmt.2_Missense_Mutation_p.I150L|PPFIA3_uc002pmu.1_Missense_Mutation_p.I60L	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	1011	SAM 2.			I -> V (in Ref. 6; AAC26101).		cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		ACATTATGGGATTATGTGCCT	0.582													6	26					0	0	1	0	0	
SLC17A7	57030	broad.mit.edu	37	19	49934368	49934368	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:49934368C>T	uc002pnp.2	-	11	1465	c.1293G>A	c.(1291-1293)CCG>CCA	p.P431P	SLC17A7_uc002pno.2_Silent_p.P93P	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	431	Cytoplasmic (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		TGGCGTAGCGCGGGGCTATGT	0.607													3	23					0	0	1	0	0	
SPIB	6689	broad.mit.edu	37	19	50925742	50925742	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:50925742G>A	uc002psd.2	+	3	89	c.64G>A	c.(64-66)GTC>ATC	p.V22I	SPIB_uc002pse.2_Missense_Mutation_p.V22I|SPIB_uc010ycc.1_Silent_p.A2A	NM_003121	NP_003112	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	22	TAD1 (Acidic).				regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			lung(1)|kidney(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		CCCAGATGGCGTCTTCTATGA	0.617													9	41					0	0	1	0	0	
KLK8	11202	broad.mit.edu	37	19	51499377	51499377	+	Missense_Mutation	SNP	C	T	T	rs56296296	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:51499377C>T	uc002pur.1	-	6	900	c.721G>A	c.(721-723)GTC>ATC	p.V241I	KLK8_uc002puq.1_Missense_Mutation_p.V286I|KLK8_uc002pus.1_Missense_Mutation_p.V100I|KLK8_uc002put.1_3'UTR|KLK8_uc002puu.1_Missense_Mutation_p.V241I|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	241	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		TTGGTATAGACGCCAGGTTTG	0.542													26	130					0	0	1	0	0	
LENG8	114823	broad.mit.edu	37	19	54968952	54968952	+	Silent	SNP	C	T	T	rs142424676	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:54968952C>T	uc002qfv.1	+	11	1791	c.1647C>T	c.(1645-1647)GTC>GTT	p.V549V	LENG8_uc002qfw.2_Silent_p.V586V			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	549							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		TGTGCATGGTCAAGTGCCACT	0.537													5	102					0	0	1	0	0	
ZNF264	9422	broad.mit.edu	37	19	57724326	57724326	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:57724326A>C	uc002qob.2	+	4	2274	c.1861A>C	c.(1861-1863)ACC>CCC	p.T621P		NM_003417	NP_003408	O43296	ZN264_HUMAN	zinc finger protein 264	621					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0135)		CCAAAGAGAAACCCCACAAGT	0.388													9	79					0	0	1	0	0	
ZNF544	27300	broad.mit.edu	37	19	58757689	58757689	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr19:58757689T>C	uc010euo.2	+	5	530	c.56T>C	c.(55-57)GTG>GCG	p.V19A	ZNF544_uc010eun.1_RNA|ZNF544_uc010yhw.1_RNA|ZNF544_uc010yhx.1_Missense_Mutation_p.V19A|ZNF544_uc010yhy.1_Missense_Mutation_p.V19A|ZNF544_uc002qrt.3_5'UTR|ZNF544_uc002qru.3_5'UTR|ZNF544_uc002qrv.2_RNA	NM_014480	NP_055295	Q6NX49	ZN544_HUMAN	zinc finger protein 544	19	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		all_cancers(17;4.17e-12)|all_epithelial(17;1.25e-08)|Colorectal(82;0.000256)|Lung NSC(17;0.000607)|all_lung(17;0.0024)|all_neural(62;0.0412)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.17)|GBM - Glioblastoma multiforme(193;0.018)		TTCGAGGATGTGGCTATGGCA	0.527													37	164					0	0	1	0	0	
MYT1L	23040	broad.mit.edu	37	2	1893203	1893203	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:1893203A>G	uc002qxe.2	-	16	3157	c.2330T>C	c.(2329-2331)ATG>ACG	p.M777T	MYT1L_uc002qxd.2_Missense_Mutation_p.M775T|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	777					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CTGCTTGTTCATGCTGAGGTC	0.597													5	66					0	0	1	0	0	
ASAP2	8853	broad.mit.edu	37	2	9437519	9437519	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:9437519C>T	uc002qzh.2	+	3	630	c.290C>T	c.(289-291)GCG>GTG	p.A97V	ASAP2_uc002qzi.2_Missense_Mutation_p.A97V	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	97					regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						TTAGGAAGTGCGTTCCTGAAG	0.468													6	56					0	0	1	0	0	
KCNF1	3754	broad.mit.edu	37	2	11053714	11053714	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:11053714G>A	uc002rax.2	+	1	1652	c.1162G>A	c.(1162-1164)GCC>ACC	p.A388T		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	388	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		GCTCAACGCGGCCATCAGCTT	0.582													8	52					0	0	1	0	0	
DDX1	1653	broad.mit.edu	37	2	15760451	15760451	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:15760451C>A	uc002rce.2	+	17	1614	c.1326C>A	c.(1324-1326)CAC>CAA	p.H442Q	DDX1_uc010yjq.1_Missense_Mutation_p.H350Q	NM_004939	NP_004930	Q92499	DDX1_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	442	Necessary for interaction with RELA.				DNA duplex unwinding|double-strand break repair|multicellular organismal development|regulation of transcription, DNA-dependent|regulation of translational initiation|spliceosome assembly|transcription, DNA-dependent	cleavage body|stress granule|tRNA-splicing ligase complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|DNA/RNA helicase activity|exonuclease activity|poly(A) RNA binding|protein binding|RNA helicase activity|transcription cofactor activity			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	all_epithelial(98;2.96e-07)|Acute lymphoblastic leukemia(84;4.24e-05)|Ovarian(717;0.0694)	GBM - Glioblastoma multiforme(3;0.00969)	Epithelial(75;4.35e-05)|OV - Ovarian serous cystadenocarcinoma(76;0.133)		ATACTGTACACCATGTTGTTG	0.378													5	61					1.23904e-05	1.32391e-05	1	1	0	
GEN1	348654	broad.mit.edu	37	2	17961984	17961984	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:17961984A>G	uc002rct.2	+	14	1578	c.1505A>G	c.(1504-1506)AAG>AGG	p.K502R	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Missense_Mutation_p.K502R|GEN1_uc002rcu.2_Missense_Mutation_p.K502R	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	502					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ATCTTTCATAAGCAGAATTCC	0.363								Homologous_recombination					11	53					0	0	1	0	0	
MATN3	4148	broad.mit.edu	37	2	20196998	20196998	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:20196998G>T	uc002rdl.2	-	6	1254	c.1191C>A	c.(1189-1191)GGC>GGA	p.G397G	MATN3_uc010exu.1_Silent_p.G355G	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	397	EGF-like 4.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AACCATGAGAGCCTAGGGCAC	0.453													5	23					3.59834e-05	3.81628e-05	1	1	0	
C2orf39	92749	broad.mit.edu	37	2	26672938	26672938	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:26672938G>T	uc002rhg.2	+	12	1658	c.1584G>T	c.(1582-1584)CTG>CTT	p.L528L		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	528											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGCTGAGGCTGGATGCCATCT	0.612													4	22					0.00024832	0.000260463	1	1	0	
TCF23	150921	broad.mit.edu	37	2	27373194	27373194	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:27373194G>A	uc010ylg.1	+	2	426	c.426G>A	c.(424-426)CCG>CCA	p.P142P		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	142					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGCCTGGCCGCCCTTCCTGC	0.622													29	262					0	0	1	0	0	
MPV17	4358	broad.mit.edu	37	2	27535602	27535602	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:27535602C>T	uc002rjr.2	-	3	271	c.224G>A	c.(223-225)CGG>CAG	p.R75Q	MPV17_uc002rjq.2_Missense_Mutation_p.R75Q|MPV17_uc002rjs.2_Missense_Mutation_p.R75Q|MPV17_uc002rjt.2_RNA	NM_002437	NP_002428	P39210	MPV17_HUMAN	Mpv17 protein	75					cellular response to reactive oxygen species|glomerular basement membrane development|homeostatic process|inner ear development|mitochondrial genome maintenance|regulation of reactive oxygen species metabolic process	integral to peroxisomal membrane|mitochondrial inner membrane					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGGATGAACCGATCCAAAAC	0.557													13	60					0	0	1	0	0	
IFT172	26160	broad.mit.edu	37	2	27681051	27681051	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:27681051G>A	uc002rku.2	-	27	2968	c.2917C>T	c.(2917-2919)CTA>TTA	p.L973L		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	973	TPR 7.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					GTGATGTATAGCACTGACACA	0.552													18	112					0	0	1	0	0	
IFT172	26160	broad.mit.edu	37	2	27684212	27684212	+	Missense_Mutation	SNP	C	T	T	rs148237432		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:27684212C>T	uc002rku.2	-	22	2417	c.2366G>A	c.(2365-2367)CGA>CAA	p.R789Q		NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	789					cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					CAGTTCCTCTCGGGTCAGCAC	0.567													9	86					0	0	1	0	0	
FAM179A	165186	broad.mit.edu	37	2	29240782	29240782	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:29240782C>T	uc010ezl.2	+	10	1671	c.1320C>T	c.(1318-1320)CCC>CCT	p.P440P	FAM179A_uc010ymm.1_Intron|FAM179A_uc002rmr.3_Intron	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	440							binding			ovary(3)|skin(1)	4						CCAGCATCCCCATCAGCCGGC	0.682													5	19					0	0	1	0	0	
CLIP4	79745	broad.mit.edu	37	2	29404451	29404451	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:29404451T>C	uc002rmv.2	+	16	2049	c.1810T>C	c.(1810-1812)TTG>CTG	p.L604L	CLIP4_uc002rmw.2_RNA	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	604										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAAAGCTGCTTTGCGTCGCAG	0.517													9	65					0	0	1	0	0	
SPAST	6683	broad.mit.edu	37	2	32339883	32339883	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:32339883A>G	uc002roc.2	+	5	1080	c.859A>G	c.(859-861)ACC>GCC	p.T287A	SPAST_uc002rod.2_Missense_Mutation_p.T255A	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	287	Required for interaction with RTN1.|Required for interaction with microtubules and microtubule severing.|Sufficient for microtubule severing.|Sufficient for interaction with microtubules.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TCCTGCTCCTACCACTCATAA	0.403													7	71					0	0	1	0	0	
YIPF4	84272	broad.mit.edu	37	2	32515676	32515676	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:32515676T>C	uc002rok.2	+	2	471	c.204T>C	c.(202-204)GAT>GAC	p.D68D		NM_032312	NP_115688	Q9BSR8	YIPF4_HUMAN	Yip1 domain family, member 4	68						endoplasmic reticulum|integral to membrane	protein binding				0	Acute lymphoblastic leukemia(172;0.155)					AAGTTGAAGATGATGATCCTG	0.323													19	69					0	0	1	0	0	
BIRC6	57448	broad.mit.edu	37	2	32668623	32668623	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:32668623A>G	uc010ezu.2	+	20	4437	c.4303A>G	c.(4303-4305)AAT>GAT	p.N1435D		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1435					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TTTACTTGATAATATGTCATT	0.308													3	9					0	0	1	0	0	
STRN	6801	broad.mit.edu	37	2	37088308	37088308	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:37088308T>A	uc002rpn.2	-	13	1645	c.1636A>T	c.(1636-1638)ACT>TCT	p.T546S	STRN_uc010ezx.2_Missense_Mutation_p.T509S	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	546	WD 2.				dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TTGGGATTAGTGGTATTCCAG	0.408													11	96					0	0	1	0	0	
STRN	6801	broad.mit.edu	37	2	37126678	37126678	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:37126678A>G	uc002rpn.2	-	6	792	c.783T>C	c.(781-783)ATT>ATC	p.I261I	STRN_uc010ezx.2_Silent_p.I261I	NM_003162	NP_003153	O43815	STRN_HUMAN	striatin, calmodulin binding protein	261					dendrite development|locomotory behavior|negative regulation of cell proliferation|tight junction assembly|Wnt receptor signaling pathway	cytoplasm|dendritic spine|neuronal cell body|postsynaptic density|postsynaptic membrane|tight junction	armadillo repeat domain binding|calmodulin binding|estrogen receptor binding|protein complex binding|protein phosphatase 2A binding			skin(1)	1		Ovarian(717;0.0129)|all_hematologic(82;0.21)				TTGAAGTATCAATGACGCTTT	0.333													4	38					0	0	1	0	0	
CEBPZ	10153	broad.mit.edu	37	2	37441037	37441037	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:37441037C>T	uc002rpz.2	-	10	2545	c.2515G>A	c.(2515-2517)GTG>ATG	p.V839M		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	839					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				TCATCATCCACGTCTTCTATA	0.289													3	20					0	0	1	0	0	
CEBPZ	10153	broad.mit.edu	37	2	37454737	37454737	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:37454737T>C	uc002rpz.2	-	2	1629	c.1599A>G	c.(1597-1599)GTA>GTG	p.V533V		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	533					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				GAGAATTCATTACTTGGAAAA	0.353													20	122					0	0	1	0	0	
PRKD3	23683	broad.mit.edu	37	2	37513366	37513366	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:37513366G>A	uc002rqd.2	-	5	1419	c.864C>T	c.(862-864)TGC>TGT	p.C288C	PRKD3_uc002rqf.1_Silent_p.C288C	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	288	Phorbol-ester/DAG-type 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				GTAACCGCTTGCAGTACTGAC	0.413													10	64					0	0	1	0	0	
PREPL	9581	broad.mit.edu	37	2	44586851	44586851	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:44586851G>A	uc002ruf.2	-	1	39	c.4C>T	c.(4-6)CAG>TAG	p.Q2*	PREPL_uc002rug.2_Nonsense_Mutation_p.Q2*|PREPL_uc002ruh.2_Nonsense_Mutation_p.Q2*|PREPL_uc010fax.2_Nonsense_Mutation_p.Q2*|PREPL_uc002rui.3_Intron|PREPL_uc002ruj.1_Intron|PREPL_uc002ruk.1_Nonsense_Mutation_p.Q2*|C2orf34_uc002rum.2_5'Flank|C2orf34_uc002rul.2_5'Flank	NM_006036	NP_006027	Q4J6C6	PPCEL_HUMAN	prolyl endopeptidase-like isoform C	2					proteolysis	cytosol	serine-type endopeptidase activity			ovary(1)	1		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GTCTTCTGCTGCATGATATCA	0.398													7	56					0	0	1	0	0	
NRXN1	9378	broad.mit.edu	37	2	51253569	51253569	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:51253569A>C	uc010fbq.2	-	3	2288	c.811T>G	c.(811-813)TTA>GTA	p.L271V	NRXN1_uc002rxe.3_Intron|NRXN1_uc002rxd.1_Intron	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TTGTCATGTAACAGCACCGGC	0.373													3	7					0	0	1	0	0	
ASB3	51130	broad.mit.edu	37	2	53992602	53992602	+	Silent	SNP	G	C	C	rs147895055		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:53992602G>C	uc002rxg.1	-	2	243	c.108C>G	c.(106-108)GTC>GTG	p.V36V	ASB3_uc002rxh.1_Intron|ASB3_uc002rxi.3_Silent_p.V74V|ASB3_uc010yoo.1_Silent_p.V36V|CHAC2_uc002rxk.1_5'Flank|uc002rxj.1_5'Flank	NM_016115	NP_057199	Q9Y575	ASB3_HUMAN	ankyrin repeat and SOCS box-containing protein 3	36	ANK 1.				intracellular signal transduction					ovary(1)|kidney(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CAGCAACATCGACACTTCGGC	0.428													22	156					0	0	1	0	0	
PNPT1	87178	broad.mit.edu	37	2	55908054	55908054	+	Splice_Site	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:55908054C>A	uc002rzf.2	-	6	507	c.454_splice	c.e6-1	p.V152_splice	PNPT1_uc002rzg.2_Splice_Site	NM_033109	NP_149100	Q8TCS8	PNPT1_HUMAN	polyribonucleotide nucleotidyltransferase 1						mRNA catabolic process|RNA processing	plasma membrane	3'-5'-exoribonuclease activity|polyribonucleotide nucleotidyltransferase activity|RNA binding				0			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TACACAGAACCTGGTAAAAGG	0.299													4	73					0.150653	0.151893	1	1	0	
BCL11A	53335	broad.mit.edu	37	2	60688122	60688122	+	Missense_Mutation	SNP	A	G	G	rs146235767		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:60688122A>G	uc002sae.1	-	4	2153	c.1925T>C	c.(1924-1926)TTC>TCC	p.F642S	BCL11A_uc002sab.2_Missense_Mutation_p.F642S|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.F311S|BCL11A_uc010ypj.1_Missense_Mutation_p.F608S|BCL11A_uc002sad.1_Missense_Mutation_p.F490S|BCL11A_uc002saf.1_Missense_Mutation_p.F608S	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	642					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GGGCAGGTCGAACTCCTTCTC	0.662			T	IGH@	B-CLL								4	49					0	0	1	0	0	
B3GNT2	10678	broad.mit.edu	37	2	62450292	62450292	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:62450292G>A	uc002sbs.2	+	2	1175	c.937G>A	c.(937-939)GGC>AGC	p.G313S		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	313	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			CCTCTACTCCGGCCACCTGGC	0.537													13	86					0	0	1	0	0	
EHBP1	23301	broad.mit.edu	37	2	63091876	63091876	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:63091876T>C	uc002sby.2	+	10	1355	c.873T>C	c.(871-873)ACT>ACC	p.T291T	EHBP1_uc010fcp.2_Silent_p.T256T|EHBP1_uc002sbx.2_Silent_p.T256T|EHBP1_uc002sbz.2_Silent_p.T256T|EHBP1_uc002scb.2_Silent_p.T256T	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	291						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			AACCTATCACTGAAACAGCTT	0.303									Hereditary_Prostate_Cancer				18	61					0	0	1	0	0	
ATP6V1B1	525	broad.mit.edu	37	2	71185198	71185198	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:71185198T>C	uc002shj.2	+	3	284	c.197T>C	c.(196-198)GTC>GCC	p.V66A	ATP6V1B1_uc002shi.1_Missense_Mutation_p.V66A|ATP6V1B1_uc010fdv.2_Missense_Mutation_p.V66A|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Missense_Mutation_p.V24A	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	66					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCGGAGATCGTCCACTTCACC	0.612													7	23					0	0	1	0	0	
CYP26B1	56603	broad.mit.edu	37	2	72371240	72371240	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:72371240G>A	uc002sih.1	-	2	307	c.307C>T	c.(307-309)CGC>TGC	p.R103C	CYP26B1_uc010yra.1_Missense_Mutation_p.R86C|CYP26B1_uc010yrb.1_Intron	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	103					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						AGGATCTTGCGCACGTTCTCC	0.622													17	87					0	0	1	0	0	
ALMS1	7840	broad.mit.edu	37	2	73777450	73777450	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:73777450G>A	uc002sje.1	+	15	10078	c.9967G>A	c.(9967-9969)GAT>AAT	p.D3323N	ALMS1_uc002sjf.1_Missense_Mutation_p.D3279N|ALMS1_uc002sjg.2_Missense_Mutation_p.D2709N|ALMS1_uc002sjh.1_Missense_Mutation_p.D2709N|ALMS1_uc010fev.1_Intron	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3321					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CACAAGAGATGATGACCTCTC	0.443													6	92					0	0	1	0	0	
SEMA4F	10505	broad.mit.edu	37	2	74884987	74884987	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:74884987G>A	uc002sna.1	+	4	476	c.365G>A	c.(364-366)TGT>TAT	p.C122Y	SEMA4F_uc010ysb.1_Intron|SEMA4F_uc010ffq.1_Intron|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_Intron|SEMA4F_uc002snc.1_Intron	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	122	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAGGACGAATGTCACAATTTT	0.502													10	141					0	0	1	0	0	
HK2	3099	broad.mit.edu	37	2	75100464	75100464	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:75100464T>C	uc002snd.2	+	5	2483	c.557T>C	c.(556-558)GTG>GCG	p.V186A		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	186	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						AGAGACGTTGTGGCTCTGATC	0.552													13	103					0	0	1	0	0	
HK2	3099	broad.mit.edu	37	2	75112659	75112659	+	Silent	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:75112659T>G	uc002snd.2	+	13	3804	c.1878T>G	c.(1876-1878)TCT>TCG	p.S626S		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	626	Catalytic.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						TCAAGGCATCTGGCTGCGAGG	0.557													13	71					0	0	1	0	0	
USP39	10713	broad.mit.edu	37	2	85848665	85848665	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:85848665T>C	uc002sqe.2	+	3	432	c.396T>C	c.(394-396)AAT>AAC	p.N132N	USP39_uc002sqb.2_5'UTR|USP39_uc010ysu.1_Silent_p.N54N|USP39_uc010ysv.1_Intron|USP39_uc010fgn.1_Silent_p.N132N|USP39_uc002sqf.2_Silent_p.N132N|USP39_uc002sqg.2_Silent_p.N132N|USP39_uc010fgo.2_Silent_p.N132N	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	132	UBP-type.				spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						CACACATCAATGCTTATGCCT	0.373													20	73					0	0	1	0	0	
ASTL	431705	broad.mit.edu	37	2	96798424	96798424	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:96798424C>A	uc010yui.1	-	6	492	c.492G>T	c.(490-492)CAG>CAT	p.Q164H		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	164					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GGGAGACCACCTGCATCCCTC	0.637													8	90					0.00448238	0.00463918	1	1	0	
ZAP70	7535	broad.mit.edu	37	2	98340736	98340736	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:98340736A>G	uc002syd.1	+	3	444	c.237A>G	c.(235-237)GGA>GGG	p.G79G	ZAP70_uc010yvf.1_Silent_p.G79G|ZAP70_uc002sye.1_5'Flank	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	79	SH2 1.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						CGCACTGTGGACCGGCAGAGC	0.682													3	11					0	0	1	0	0	
GPR45	11250	broad.mit.edu	37	2	105858502	105858502	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:105858502C>T	uc002tco.1	+	1	303	c.187C>T	c.(187-189)CCG>TCG	p.P63S		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	63	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GTACCAGAGGCCGGCTATGCG	0.622													17	148					0	0	1	0	0	
RGPD3	653489	broad.mit.edu	37	2	107032334	107032334	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:107032334G>T	uc010ywi.1	-	21	5093	c.5036C>A	c.(5035-5037)ACC>AAC	p.T1679N		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1679					intracellular transport		binding			ovary(1)	1						GACTGCATTGGTTGCCTCTAT	0.438													7	170					2.80697e-09	3.08767e-09	1	1	0	
RANBP2	5903	broad.mit.edu	37	2	109383234	109383234	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:109383234T>C	uc002tem.3	+	20	6365	c.6239T>C	c.(6238-6240)GTA>GCA	p.V2080A		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2080	RanBD1 2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AGAGAACAAGTACTAAAAGTG	0.428													54	390					0	0	1	0	0	
BUB1	699	broad.mit.edu	37	2	111423901	111423901	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:111423901T>G	uc002tgc.2	-	9	1008	c.896A>C	c.(895-897)AAG>ACG	p.K299T	BUB1_uc010yxh.1_Missense_Mutation_p.K279T|BUB1_uc010fkb.2_Missense_Mutation_p.K299T|BUB1_uc002tgd.2_Missense_Mutation_p.K299T	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	299					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		CTGATGCAACTTCTTATGAAG	0.428													9	34					0	0	1	0	0	
CLASP1	23332	broad.mit.edu	37	2	122125256	122125256	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:122125256T>C	uc002tnc.2	-	34	4184	c.3794A>G	c.(3793-3795)AAC>AGC	p.N1265S	CLASP1_uc010yyv.1_Missense_Mutation_p.N311S|CLASP1_uc002tmz.2_Missense_Mutation_p.N350S|CLASP1_uc002tna.2_Missense_Mutation_p.N311S|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.N1206S|CLASP1_uc010yza.1_Missense_Mutation_p.N1198S|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.N101S|CLASP1_uc002tnf.2_Missense_Mutation_p.N167S	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1265	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Interaction with CLIP2 (By similarity).				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GGGGTACGGGTTGTAGTCTCG	0.592													13	100					0	0	1	0	0	
LCT	3938	broad.mit.edu	37	2	136566638	136566638	+	Silent	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:136566638T>G	uc002tuu.1	-	8	3290	c.3279A>C	c.(3277-3279)ATA>ATC	p.I1093I		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1093	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		CGGCGTGGGCTATCCTATATG	0.547													14	54					0	0	1	0	0	
LCT	3938	broad.mit.edu	37	2	136567189	136567189	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:136567189C>T	uc002tuu.1	-	8	2739	c.2728G>A	c.(2728-2730)GGC>AGC	p.G910S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	910	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity	p.G910V(1)		ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GAGGACACGCCCCACAGAAAG	0.532													11	85					0	0	1	0	0	
SPOPL	339745	broad.mit.edu	37	2	139316684	139316684	+	Silent	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:139316684T>A	uc002tvh.2	+	6	973	c.573T>A	c.(571-573)GGT>GGA	p.G191G		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	191						nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		AAGATTTAGGTAATCTCTGGG	0.368													6	119					0	0	1	0	0	
NXPH2	11249	broad.mit.edu	37	2	139428686	139428686	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:139428686C>T	uc002tvi.2	-	2	601	c.601G>A	c.(601-603)GCC>ACC	p.A201T		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	201	V (Cys-rich).				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		TTGCACAGGGCGGTCTTTTTC	0.468													6	27					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141055405	141055405	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:141055405C>T	uc002tvj.1	-	84	13911	c.12939G>A	c.(12937-12939)CCG>CCA	p.P4313P		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4313	Extracellular (Potential).|EGF-like 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGGTGTATTCCGGCTGGCAGT	0.448										TSP Lung(27;0.18)			42	236					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141055459	141055459	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:141055459A>G	uc002tvj.1	-	84	13857	c.12885T>C	c.(12883-12885)AAT>AAC	p.N4295N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4295	Extracellular (Potential).|EGF-like 12.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGGTTCCTCCATTTTGACAAA	0.488										TSP Lung(27;0.18)			22	191					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141232835	141232835	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:141232835C>T	uc002tvj.1	-	60	10469	c.9497G>A	c.(9496-9498)AGT>AAT	p.S3166N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3166	Extracellular (Potential).|LDL-receptor class B 30.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TATGACAACACTCTGATTGGT	0.373										TSP Lung(27;0.18)			9	80					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141253204	141253204	+	Silent	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:141253204A>C	uc002tvj.1	-	56	9936	c.8964T>G	c.(8962-8964)ACT>ACG	p.T2988T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2988	Extracellular (Potential).|EGF-like 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCACTTGTAAGTCCCGTATG	0.448										TSP Lung(27;0.18)			11	100					0	0	1	0	0	
LRP1B	53353	broad.mit.edu	37	2	141641534	141641534	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:141641534T>C	uc002tvj.1	-	25	4993	c.4021A>G	c.(4021-4023)ACA>GCA	p.T1341A	LRP1B_uc010fnl.1_Missense_Mutation_p.T523A	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1341	Extracellular (Potential).|LDL-receptor class B 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGTCGACTGTCAGGCCTTCT	0.473										TSP Lung(27;0.18)			23	126					0	0	1	0	0	
GALNT5	11227	broad.mit.edu	37	2	158114806	158114806	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:158114806T>C	uc002tzg.2	+	1	467	c.212T>C	c.(211-213)ATA>ACA	p.I71T	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	71	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						TACAGCAGCATAAAAGAGATG	0.473													10	161					0	0	1	0	0	
SCN2A	6326	broad.mit.edu	37	2	166152444	166152444	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:166152444C>A	uc002udc.2	+	2	401	c.111C>A	c.(109-111)CCC>CCA	p.P37P	SCN2A_uc002udd.2_Silent_p.P37P|SCN2A_uc002ude.2_Silent_p.P37P	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	37					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CTAAGAGACCCAAACAGGAAC	0.473													4	21					0.00909568	0.00930166	1	1	0	
SCN9A	6335	broad.mit.edu	37	2	167056026	167056026	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:167056026A>G	uc010fpl.2	-	27	5431	c.5090T>C	c.(5089-5091)CTT>CCT	p.L1697P	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1708	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTTACTGTTAAGAATAGGTGC	0.413													38	239					0	0	1	0	0	
XIRP2	129446	broad.mit.edu	37	2	168107435	168107435	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:168107435G>A	uc002udx.2	+	8	9551	c.9533G>A	c.(9532-9534)CGC>CAC	p.R3178H	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R3003H|XIRP2_uc010fpq.2_Missense_Mutation_p.R2956H|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3003					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CCCAGGAGTCGCTCTGAACAA	0.493													19	99					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179400073	179400073	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179400073T>G	uc010zfg.1	-	307	93789	c.93565A>C	c.(93565-93567)AGT>CGT	p.S31189R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S24884R|TTN_uc010zfi.1_Missense_Mutation_p.S24817R|TTN_uc010zfj.1_Missense_Mutation_p.S24692R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32116							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACTGGTAACTTGTTTTTCCA	0.418													19	108					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179442835	179442835	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179442835A>C	uc010zfg.1	-	271	60927	c.60703T>G	c.(60703-60705)TTT>GTT	p.F20235V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.F13930V|TTN_uc010zfi.1_Missense_Mutation_p.F13863V|TTN_uc010zfj.1_Missense_Mutation_p.F13738V|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21162							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCACTTTAAAGTCTCTCATC	0.433													13	86					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179466741	179466741	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179466741C>G	uc010zfg.1	-	233	47777	c.47553G>C	c.(47551-47553)AAG>AAC	p.K15851N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K9546N|TTN_uc010zfi.1_Missense_Mutation_p.K9479N|TTN_uc010zfj.1_Missense_Mutation_p.K9354N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16778							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATTGCTTTCTTTGCCTTTC	0.398													10	117					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179584494	179584494	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179584494C>A	uc010zfg.1	-	79	20217	c.19993G>T	c.(19993-19995)GAG>TAG	p.E6665*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E3326*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7592							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTACACACTCTAATGCAAAA	0.393													4	63					0.000602214	0.000630122	1	1	0	
TTN	7273	broad.mit.edu	37	2	179614274	179614274	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179614274G>A	uc002unb.2	-	46	13077	c.12853C>T	c.(12853-12855)CAT>TAT	p.H4285Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATAAAAATGTGCCCTTACA	0.358													10	59					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179616598	179616598	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179616598A>C	uc002unb.2	-	46	10753	c.10529T>G	c.(10528-10530)CTT>CGT	p.L3510R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTAAATGTAAGTTTCTGGGT	0.378													23	134					0	0	1	0	0	
TTN	7273	broad.mit.edu	37	2	179643977	179643977	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:179643977C>T	uc010zfg.1	-	23	4166	c.3942G>A	c.(3940-3942)ATG>ATA	p.M1314I	TTN_uc010zfh.1_Missense_Mutation_p.M1268I|TTN_uc010zfi.1_Missense_Mutation_p.M1268I|TTN_uc010zfj.1_Missense_Mutation_p.M1268I|TTN_uc002unb.2_Missense_Mutation_p.M1314I|uc002unc.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1314							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATATCCAGACATCTTGCAAT	0.313													5	58					0	0	1	0	0	
NCKAP1	10787	broad.mit.edu	37	2	183792922	183792922	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:183792922C>T	uc002upc.2	-	29	3505	c.3103G>A	c.(3103-3105)GCC>ACC	p.A1035T	NCKAP1_uc002upb.2_Missense_Mutation_p.A1041T	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	1035					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TGGTTGATGGCTTTGGCCAAG	0.368													7	100					0	0	1	0	0	
GULP1	51454	broad.mit.edu	37	2	189406013	189406013	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:189406013C>T	uc010fru.2	+	7	828	c.367C>T	c.(367-369)CAT>TAT	p.H123Y	GULP1_uc002uqc.3_Missense_Mutation_p.H123Y|GULP1_uc002uqd.2_Missense_Mutation_p.H123Y|GULP1_uc010zfw.1_Intron|GULP1_uc002uqe.2_Missense_Mutation_p.H123Y|GULP1_uc002uqf.2_Missense_Mutation_p.H123Y|GULP1_uc002uqg.2_Missense_Mutation_p.H123Y	NM_016315	NP_057399	Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing	123	PID.				apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			GTCAAATAAACATTTGTGCTA	0.363													13	68					0	0	1	0	0	
MFSD6	54842	broad.mit.edu	37	2	191353530	191353530	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:191353530T>C	uc002urz.2	+	5	2102	c.1778T>C	c.(1777-1779)TTA>TCA	p.L593S	MFSD6_uc010zge.1_Missense_Mutation_p.L55S	NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	593	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2						GGAGGCGTGTTAGTCAATTAT	0.433													13	106					0	0	1	0	0	
GLS	2744	broad.mit.edu	37	2	191775034	191775034	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:191775034C>A	uc002usf.2	+	7	1289	c.1025C>A	c.(1024-1026)ACT>AAT	p.T342N	GLS_uc002use.2_Missense_Mutation_p.T342N	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	342					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATTGTTGTGACTTCACTAATA	0.269													3	32					0.150653	0.151893	1	1	0	
TMEFF2	23671	broad.mit.edu	37	2	192818505	192818505	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:192818505C>T	uc002utc.2	-	9	1322	c.928G>A	c.(928-930)GTT>ATT	p.V310I		NM_016192	NP_057276	Q9UIK5	TEFF2_HUMAN	transmembrane protein with EGF-like and two	310	Required for shedding.|Extracellular (Potential).					extracellular region|integral to membrane				lung(2)|pancreas(1)|breast(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.0835)			CCGGGAACAACGTATAGAACA	0.448													10	67					0	0	1	0	0	
DNAH7	56171	broad.mit.edu	37	2	196837116	196837116	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:196837116G>A	uc002utj.3	-	16	2009	c.1908C>T	c.(1906-1908)CTC>CTT	p.L636L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	636	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGAGGAAGGCGAGGCAGTTTT	0.398													15	95					0	0	1	0	0	
PGAP1	80055	broad.mit.edu	37	2	197763087	197763087	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:197763087C>T	uc002utw.2	-	6	928	c.814G>A	c.(814-816)GCA>ACA	p.A272T	PGAP1_uc002utx.2_Missense_Mutation_p.A98T|PGAP1_uc002uty.1_Missense_Mutation_p.A272T|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_Missense_Mutation_p.A98T	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	272	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						TTAGGCACTGCTGAACTCTAA	0.338													9	58					0	0	1	0	0	
ORC2L	4999	broad.mit.edu	37	2	201785740	201785740	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:201785740T>C	uc002uwr.2	-	14	1527	c.1270A>G	c.(1270-1272)ATT>GTT	p.I424V	ORC2L_uc010zhj.1_Missense_Mutation_p.I424V	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	424					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						AGGTGGTCAATGGATGCTATA	0.353													4	49					0	0	1	0	0	
PIKFYVE	200576	broad.mit.edu	37	2	209190429	209190429	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:209190429C>T	uc002vcz.2	+	20	3052	c.2894C>T	c.(2893-2895)GCG>GTG	p.A965V	PIKFYVE_uc010fun.1_Missense_Mutation_p.A646V|PIKFYVE_uc002vcy.1_Missense_Mutation_p.A909V	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	965					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GCTTGCCCGGCGGGTCTCCCT	0.502													4	82					0	0	1	0	0	
PTH2R	5746	broad.mit.edu	37	2	209302278	209302278	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:209302278T>C	uc002vdb.2	+	3	408	c.195T>C	c.(193-195)CCT>CCC	p.P65P	PTH2R_uc010zjb.1_Silent_p.P76P	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	65	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		ATTGTTTCCCTGAATGGGATG	0.343													4	61					0	0	1	0	0	
TTLL4	9654	broad.mit.edu	37	2	219617886	219617886	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:219617886T>C	uc002viy.2	+	18	3606	c.3236T>C	c.(3235-3237)GTT>GCT	p.V1079A	TTLL4_uc010zkl.1_Missense_Mutation_p.V914A|TTLL4_uc010fvx.2_Missense_Mutation_p.V1015A|TTLL4_uc010zkm.1_3'UTR	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	1079					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		CACATGGGAGTTGTCTCTGAT	0.537													35	266					0	0	1	0	0	
SPEG	10290	broad.mit.edu	37	2	220337027	220337027	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:220337027C>T	uc010fwg.2	+	15	3914	c.3914C>T	c.(3913-3915)CCC>CTC	p.P1305L		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1305	Fibronectin type-III 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		ACATGGAACCCCCCCAGGAGT	0.647													10	51					0	0	1	0	0	
KIAA1486	57624	broad.mit.edu	37	2	226446682	226446682	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:226446682C>T	uc002voe.2	+	4	724	c.549C>T	c.(547-549)AGC>AGT	p.S183S	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	183										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GACCCCACAGCGATGAATATT	0.408													20	136					0	0	1	0	0	
PID1	55022	broad.mit.edu	37	2	229890417	229890417	+	Silent	SNP	G	A	A	rs147151232		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:229890417G>A	uc002vpr.3	-	3	722	c.684C>T	c.(682-684)AGC>AGT	p.S228S	PID1_uc002vps.3_Silent_p.S226S|PID1_uc002vpt.3_Silent_p.S195S|PID1_uc002vpu.3_Silent_p.S146S	NM_001100818	NP_001094288	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	228	PID.					cytoplasm				breast(3)|skin(1)	4		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		TCCGCCCGTCGCTCTTCATAC	0.562													53	71					0	0	1	0	0	
NGEF	25791	broad.mit.edu	37	2	233745944	233745944	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:233745944C>A	uc002vts.2	-	14	2102	c.1854G>T	c.(1852-1854)CAG>CAT	p.Q618H	NGEF_uc010zmm.1_Missense_Mutation_p.Q341H|NGEF_uc010fyg.1_Missense_Mutation_p.Q526H	NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	618	SH3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		GGTGCACGCACTGGACCTGGG	0.657													4	95					0.00909568	0.00930166	1	1	0	
IQCA1	79781	broad.mit.edu	37	2	237285818	237285818	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:237285818A>G	uc002vvz.1	-	13	1671	c.1489T>C	c.(1489-1491)TCT>CCT	p.S497P	IQCA1_uc002vwb.2_Missense_Mutation_p.S505P|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.S456P	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	497							ATP binding			ovary(1)	1						TTATACAGAGACTCGATGGTC	0.438													4	70					0	0	1	0	0	
COL6A3	1293	broad.mit.edu	37	2	238289663	238289663	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:238289663C>T	uc002vwl.2	-	5	2077	c.1792G>A	c.(1792-1794)GAC>AAC	p.D598N	COL6A3_uc002vwo.2_Missense_Mutation_p.D392N|COL6A3_uc010znj.1_Missense_Mutation_p.D191N|COL6A3_uc002vwq.2_Missense_Mutation_p.D392N|COL6A3_uc002vwr.2_Missense_Mutation_p.D191N|COL6A3_uc010znk.1_Missense_Mutation_p.D598N	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	598	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGGGAGGAGTCGAAAGCGATC	0.592													8	59					0	0	1	0	0	
HDLBP	3069	broad.mit.edu	37	2	242194542	242194542	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:242194542G>A	uc002waz.2	-	9	1340	c.1112C>T	c.(1111-1113)GCC>GTC	p.A371V	HDLBP_uc002wba.2_Missense_Mutation_p.A371V|HDLBP_uc002wbb.2_Missense_Mutation_p.A323V|HDLBP_uc010fzn.1_Missense_Mutation_p.A100V	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	371	KH 3.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		CCAGGAAGGGGCGGCGACAGA	0.522													35	194					0	0	1	0	0	
GAL3ST2	64090	broad.mit.edu	37	2	242741350	242741350	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr2:242741350C>A	uc002wcj.1	+	3	405	c.274C>A	c.(274-276)CTG>ATG	p.L92M		NM_022134	NP_071417	Q9H3Q3	G3ST2_HUMAN	galactose-3-O-sulfotransferase 2	92	Lumenal (Potential).				biosynthetic process	Golgi cisterna membrane|integral to membrane	galactosylceramide sulfotransferase activity				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		ACGCGTCCACCTGGGCTACCC	0.652													14	50					6.31663e-08	6.86034e-08	1	1	0	
VPS16	64601	broad.mit.edu	37	20	2841689	2841689	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:2841689C>T	uc002whe.2	+	7	752	c.704C>T	c.(703-705)GCA>GTA	p.A235V	VPS16_uc002whh.2_5'Flank|VPS16_uc002whf.2_Missense_Mutation_p.A235V|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_5'Flank|VPS16_uc002whi.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	235					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						CGACACCTGGCACTCTTCACA	0.592													12	160					0	0	1	0	0	
PROKR2	128674	broad.mit.edu	37	20	5294808	5294808	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:5294808C>A	uc010zqw.1	-	1	208	c.208G>T	c.(208-210)GGT>TGT	p.G70C	PROKR2_uc010zqx.1_Missense_Mutation_p.G70C|PROKR2_uc010zqy.1_Missense_Mutation_p.G70C|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	70	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ACAAAGTTACCGATGCCGCAG	0.542										HNSCC(71;0.22)			20	100					1.50039e-11	1.67622e-11	1	1	0	
SEL1L2	80343	broad.mit.edu	37	20	13856754	13856754	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:13856754A>G	uc010gcf.2	-	12	1116	c.1034T>C	c.(1033-1035)TTA>TCA	p.L345S	SEL1L2_uc002woq.3_Missense_Mutation_p.L206S|SEL1L2_uc010zrl.1_Missense_Mutation_p.L345S|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	345	Extracellular (Potential).|Sel1-like 6.					integral to membrane	binding			ovary(2)	2						ATTCCCCTCTAAATACATCTA	0.294													10	181					0	0	1	0	0	
KIF16B	55614	broad.mit.edu	37	20	16360254	16360254	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:16360254C>A	uc002wpg.1	-	19	2551	c.2393G>T	c.(2392-2394)CGG>CTG	p.R798L	KIF16B_uc002wpe.1_Missense_Mutation_p.R180L|KIF16B_uc002wpf.1_Missense_Mutation_p.R180L|KIF16B_uc010gch.1_Missense_Mutation_p.R798L|KIF16B_uc010gci.1_Missense_Mutation_p.R798L|KIF16B_uc010gcj.1_Missense_Mutation_p.R809L	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	798	Glu-rich.|Potential.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GAGGGATTCCCGAATGCCTTC	0.577													9	107					2.52707e-12	2.84171e-12	1	1	0	
PYGB	5834	broad.mit.edu	37	20	25259058	25259058	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:25259058G>A	uc002wup.2	+	8	1068	c.959G>A	c.(958-960)CGG>CAG	p.R320Q		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	320					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	TTCGGCTGCCGGGACCCTGTG	0.622													12	94					0	0	1	0	0	
NINL	22981	broad.mit.edu	37	20	25485646	25485646	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:25485646T>C	uc002wux.1	-	6	660	c.586A>G	c.(586-588)ACC>GCC	p.T196A	NINL_uc010gdn.1_Missense_Mutation_p.T196A|NINL_uc010gdo.1_Missense_Mutation_p.T36A|NINL_uc010ztf.1_Missense_Mutation_p.T212A	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	196	EF-hand 3.				G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CTCTCTGGGGTGTCAAAGGAG	0.637													6	33					0	0	1	0	0	
NCOA6	23054	broad.mit.edu	37	20	33345759	33345759	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:33345759C>T	uc002xav.2	-	8	3363	c.792G>A	c.(790-792)CAG>CAA	p.Q264Q	NCOA6_uc002xaw.2_Silent_p.Q264Q|NCOA6_uc010gew.1_Silent_p.Q221Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	264	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						gttgttgttgctgctgctgct	0.308													6	56					0	0	1	0	0	
MYH7B	57644	broad.mit.edu	37	20	33575629	33575629	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:33575629T>C	uc002xbi.1	+	16	1546	c.1454T>C	c.(1453-1455)GTG>GCG	p.V485A	MIR499_hsa-mir-499|MI0003183_5'Flank	NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	443	Myosin head-like.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			AGGTGGCTGGTGTCTCGGATC	0.612													10	124					0	0	1	0	0	
CHD6	84181	broad.mit.edu	37	20	40118621	40118621	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:40118621T>C	uc002xka.1	-	12	1655	c.1477A>G	c.(1477-1479)ACC>GCC	p.T493A	CHD6_uc002xkd.2_Missense_Mutation_p.T471A	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	493	ATP (Potential).|Helicase ATP-binding.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GACTGGATGGTTTTCCCTAGG	0.428													16	181					0	0	1	0	0	
HNF4A	3172	broad.mit.edu	37	20	43034862	43034862	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:43034862T>C	uc002xma.2	+	2	369	c.280T>C	c.(280-282)TAC>CAC	p.Y94H	HNF4A_uc010zwo.1_Silent_p.C84C|HNF4A_uc002xlt.2_Missense_Mutation_p.Y72H|HNF4A_uc002xlu.2_Missense_Mutation_p.Y72H|HNF4A_uc002xlv.2_Missense_Mutation_p.Y72H|HNF4A_uc002xly.2_Missense_Mutation_p.Y94H|HNF4A_uc002xlz.2_Missense_Mutation_p.Y94H|HNF4A_uc010ggq.2_Missense_Mutation_p.Y87H	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	94	Nuclear receptor.				blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GAACCACATGTACTCCTGCAG	0.532													5	31					0	0	1	0	0	
ADA	100	broad.mit.edu	37	20	43249007	43249007	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:43249007T>G	uc002xmj.2	-	11	1139	c.1011A>C	c.(1009-1011)GAA>GAC	p.E337D	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	337			Missing (in ADASCID).		adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	TCTTTTCATCTTCTGGGAGGA	0.418									Adenosine_Deaminase_Deficiency				11	106					0	0	1	0	0	
ADA	100	broad.mit.edu	37	20	43251662	43251662	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:43251662C>T	uc002xmj.2	-	7	792	c.664G>A	c.(664-666)GAA>AAA	p.E222K	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	222					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	TTTACTACTTCGGCCGAGCCC	0.627									Adenosine_Deaminase_Deficiency				15	128					0	0	1	0	0	
KCNS1	3787	broad.mit.edu	37	20	43726423	43726423	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:43726423G>A	uc002xnc.2	-	4	1387	c.990C>T	c.(988-990)GGC>GGT	p.G330G	KCNS1_uc002xnd.2_Silent_p.G330G	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	330						voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				ACTCCTTGCCGCCCTGGTCGC	0.632													12	28					0	0	1	0	0	
NCOA3	8202	broad.mit.edu	37	20	46276073	46276073	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:46276073T>A	uc002xtk.2	+	18	3714	c.3509T>A	c.(3508-3510)CTT>CAT	p.L1170H	NCOA3_uc010ght.1_Missense_Mutation_p.L1165H|NCOA3_uc002xtl.2_Missense_Mutation_p.L1170H|NCOA3_uc002xtm.2_Missense_Mutation_p.L1170H|NCOA3_uc002xtn.2_Missense_Mutation_p.L1170H|NCOA3_uc010zyc.1_Missense_Mutation_p.L965H	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1170	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						CCCAAGCAACTTAGAATGCAG	0.493													4	73					0	0	1	0	0	
ARFGEF2	10564	broad.mit.edu	37	20	47570216	47570216	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:47570216A>G	uc002xtx.3	+	6	879	c.727A>G	c.(727-729)ACA>GCA	p.T243A		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	243					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			AAGCAAACCAACAACTCCCGA	0.473													5	89					0	0	1	0	0	
SALL4	57167	broad.mit.edu	37	20	50407791	50407791	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:50407791C>T	uc002xwh.3	-	2	1332	c.1231G>A	c.(1231-1233)GTG>ATG	p.V411M	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	411	C2H2-type 2.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ACAGAGCACACGAAGGGTCTC	0.552													7	64					0	0	1	0	0	
TSHZ2	128553	broad.mit.edu	37	20	51870590	51870590	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:51870590A>G	uc002xwo.2	+	2	1549	c.593A>G	c.(592-594)TAC>TGC	p.Y198C		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	198				Y -> C (in Ref. 2; CAE45871).	multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GTGCAGTTGTACCGACAGAGC	0.572													6	55					0	0	1	0	0	
TSHZ2	128553	broad.mit.edu	37	20	51872673	51872673	+	Silent	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:51872673A>T	uc002xwo.2	+	2	3632	c.2676A>T	c.(2674-2676)TCA>TCT	p.S892S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	892	Homeobox; atypical.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CGGGACTCTCAATGACCACTA	0.498													5	97					0	0	1	0	0	
DOK5	55816	broad.mit.edu	37	20	53205314	53205314	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:53205314A>C	uc002xwy.2	+	4	598	c.378A>C	c.(376-378)TTA>TTC	p.L126F	DOK5_uc010gin.2_Missense_Mutation_p.L18F|DOK5_uc002xwz.2_Missense_Mutation_p.Y10S	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	126							insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			AGCCTGACTTACTGGCCACTG	0.423													11	89					0	0	1	0	0	
CDH4	1002	broad.mit.edu	37	20	60485530	60485530	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:60485530C>T	uc002ybn.1	+	9	1255	c.1241C>T	c.(1240-1242)ACG>ATG	p.T414M	CDH4_uc002ybp.1_Missense_Mutation_p.T340M	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	414	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GCAAACCTCACGGTGATGGAC	0.542													15	44					0	0	1	0	0	
DIDO1	11083	broad.mit.edu	37	20	61542343	61542343	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:61542343T>C	uc002ydr.1	-	3	886	c.622A>G	c.(622-624)ACT>GCT	p.T208A	DIDO1_uc002yds.1_Missense_Mutation_p.T208A|DIDO1_uc002ydt.1_Missense_Mutation_p.T208A|DIDO1_uc002ydu.1_Missense_Mutation_p.T208A|DIDO1_uc002ydv.1_Missense_Mutation_p.T208A|DIDO1_uc002ydw.1_Missense_Mutation_p.T208A|DIDO1_uc002ydx.1_Missense_Mutation_p.T208A|DIDO1_uc011aao.1_Missense_Mutation_p.T208A	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	208					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CCCTCCACAGTGTCACTGGCC	0.632													10	73					0	0	1	0	0	
SLC17A9	63910	broad.mit.edu	37	20	61588850	61588850	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:61588850C>T	uc002yea.3	+	3	499	c.315C>T	c.(313-315)GCC>GCT	p.A105A	SLC17A9_uc002ydz.3_Silent_p.A99A|SLC17A9_uc011aap.1_Silent_p.A125A	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	105	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CCATCACGGCCGTCACCCCAC	0.627													5	53					0	0	1	0	0	
KCNQ2	3785	broad.mit.edu	37	20	62046342	62046342	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:62046342A>G	uc002yey.1	-	13	1616	c.1439T>C	c.(1438-1440)GTG>GCG	p.V480A	KCNQ2_uc002yez.1_Missense_Mutation_p.V450A|KCNQ2_uc002yfa.1_Missense_Mutation_p.V462A|KCNQ2_uc002yfb.1_Missense_Mutation_p.V452A	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	480	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	GCTCTTGGGCACCTTGCTGGG	0.706													6	89					0	0	1	0	0	
DNAJC5	80331	broad.mit.edu	37	20	62559774	62559774	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr20:62559774G>A	uc002yhf.2	+	2	246	c.76G>A	c.(76-78)GCA>ACA	p.A26T	DNAJC5_uc002yhg.1_Missense_Mutation_p.A26T|DNAJC5_uc002yhh.2_RNA	NM_025219	NP_079495	Q9H3Z4	DNJC5_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	26	J.				neurotransmitter secretion|protein folding	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|melanosome|plasma membrane	heat shock protein binding|unfolded protein binding			pancreas(1)	1	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					GGACAAGAACGCAACCTCAGA	0.502													9	70					0	0	1	0	0	
NCAM2	4685	broad.mit.edu	37	21	22910175	22910175	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:22910175C>T	uc002yld.1	+	18	2660	c.2411C>T	c.(2410-2412)CCT>CTT	p.P804L	NCAM2_uc011acb.1_Missense_Mutation_p.P662L	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	804	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AGAAAATTGCCTTTAAAGGAA	0.318													6	65					0	0	1	0	0	
JAM2	58494	broad.mit.edu	37	21	27084687	27084687	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:27084687G>A	uc002ylp.1	+	9	1402	c.857G>A	c.(856-858)AGT>AAT	p.S286N	JAM2_uc011ace.1_3'UTR|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Missense_Mutation_p.S250N|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.S282N|JAM2_uc010gli.1_Intron	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	286	Cytoplasmic (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						ACGACAATGAGTGAAAATGTG	0.313													10	69					0	0	1	0	0	
RNF160	26046	broad.mit.edu	37	21	30309004	30309004	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:30309004A>G	uc002ymr.2	-	26	4649	c.4636T>C	c.(4636-4638)TCC>CCC	p.S1546P		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1500							ligase activity|zinc ion binding				0						AGATACATGGAATACAAAGCC	0.378													48	185					0	0	1	0	0	
B3GALT5	10317	broad.mit.edu	37	21	41033164	41033164	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:41033164G>A	uc002yyb.1	+	5	1270	c.678G>A	c.(676-678)GCG>GCA	p.A226A	B3GALT5_uc002yye.2_Silent_p.A226A|B3GALT5_uc002yyi.1_Silent_p.A226A|B3GALT5_uc002yyj.1_Silent_p.A226A|B3GALT5_uc002yyk.1_Silent_p.A226A|B3GALT5_uc002yyl.1_Silent_p.A226A|B3GALT5_uc002yym.1_Silent_p.A226A	NM_033173	NP_149363	Q9Y2C3	B3GT5_HUMAN	UDP-Gal:betaGlcNAc beta	226	Lumenal (Potential).				protein glycosylation	endoplasmic reticulum|Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1		Prostate(19;2.55e-06)				GCGACGTGGCGAGTCAGGTGT	0.522													24	63					0	0	1	0	0	
DSCAM	1826	broad.mit.edu	37	21	41719765	41719765	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:41719765A>G	uc002yyq.1	-	6	1494	c.1042T>C	c.(1042-1044)TAC>CAC	p.Y348H	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	348	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCATTGCGGTACCAGGAGAGT	0.502													10	96					0	0	1	0	0	
KRTAP10-2	386679	broad.mit.edu	37	21	45971299	45971299	+	Missense_Mutation	SNP	T	C	C	rs233240	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:45971299T>C	uc002zfi.1	-	1	90	c.43A>G	c.(43-45)AAC>GAC	p.N15D	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	15						keratin filament		p.N15D(1)		large_intestine(1)	1						TGCCAGGAGTTGGTGCAGGCG	0.597													6	87					0	0	1	0	0	
PCNT	5116	broad.mit.edu	37	21	47848469	47848469	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:47848469G>A	uc002zji.3	+	35	7762	c.7655G>A	c.(7654-7656)CGC>CAC	p.R2552H	PCNT_uc002zjj.2_Missense_Mutation_p.R2434H	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	2552	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GCAGAGGCGCGCGGGAGCCAG	0.692													4	10					0	0	1	0	0	
DIP2A	23181	broad.mit.edu	37	21	47961668	47961668	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr21:47961668G>T	uc002zjo.2	+	18	2220	c.2037_splice	c.e18-1	p.R679_splice	DIP2A_uc011afy.1_Splice_Site_p.R615_splice|DIP2A_uc011afz.1_Splice_Site_p.R675_splice|DIP2A_uc002zjl.2_Splice_Site_p.R679_splice|DIP2A_uc002zjm.2_Splice_Site_p.R679_splice|DIP2A_uc010gql.2_Splice_Site_p.R636_splice|DIP2A_uc002zjn.2_Splice_Site_p.R679_splice|DIP2A_uc002zjp.1_Splice_Site_p.R424_splice|DIP2A_uc002zjq.2_Splice_Site_p.R71_splice	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a						multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		TTATTTTCTAGGCCACCTGAT	0.493													6	33					0.0215528	0.0218585	1	1	0	
TOP3B	8940	broad.mit.edu	37	22	22323108	22323108	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:22323108T>C	uc002zvs.2	-	7	1056	c.621A>G	c.(619-621)TTA>TTG	p.L207L	TOP3B_uc010gtm.1_5'Flank|TOP3B_uc002zvr.2_5'UTR|TOP3B_uc010gtl.2_Silent_p.L207L|TOP3B_uc002zvt.3_Silent_p.L207L	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	207					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		GAGAGCTGTCTAAATCACCGT	0.458													13	89					0	0	1	0	0	
MYO18B	84700	broad.mit.edu	37	22	26423589	26423589	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:26423589C>T	uc003abz.1	+	43	7899	c.7649C>T	c.(7648-7650)ACG>ATG	p.T2550M	MYO18B_uc003aca.1_Missense_Mutation_p.T2431M|MYO18B_uc010guy.1_Missense_Mutation_p.T2432M|MYO18B_uc010guz.1_Missense_Mutation_p.T2430M|MYO18B_uc011aka.1_Missense_Mutation_p.T1704M|MYO18B_uc011akb.1_Missense_Mutation_p.T2063M|MYO18B_uc010gva.1_Missense_Mutation_p.T533M|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2550						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GAGCCAGGGACGGGGAGGAAA	0.552													6	17					0	0	1	0	0	
NEFH	4744	broad.mit.edu	37	22	29886141	29886141	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:29886141C>T	uc003afo.2	+	4	2583	c.2512C>T	c.(2512-2514)CCC>TCC	p.P838S	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	844	Tail.				cell death|nervous system development	neurofilament					0						AGTCAAAGAGCCCCCAAAGAA	0.542													7	24					0	0	1	0	0	
MTMR3	8897	broad.mit.edu	37	22	30415734	30415734	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:30415734G>A	uc003agv.3	+	17	2414	c.2086G>A	c.(2086-2088)GCC>ACC	p.A696T	MTMR3_uc003agu.3_Missense_Mutation_p.A696T|MTMR3_uc003agw.3_Missense_Mutation_p.A696T	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	696					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			CTTGCAGGAGGCCACCAAAGA	0.587													8	76					0	0	1	0	0	
MB	4151	broad.mit.edu	37	22	36006983	36006983	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:36006983G>A	uc003anz.2	-	2	346	c.266C>T	c.(265-267)CCC>CTC	p.P89L	MB_uc003aoa.2_Missense_Mutation_p.P89L|MB_uc003aob.2_Missense_Mutation_p.P89L	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	89							heme binding|oxygen transporter activity				0						CTGTGCCAGGGGCTTAATCTC	0.433													3	29					0	0	1	0	0	
XRCC6	2547	broad.mit.edu	37	22	42052906	42052906	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:42052906G>T	uc003bao.1	+	10	1362	c.1292_splice	c.e10-1	p.G431_splice	XRCC6_uc003bap.1_Splice_Site_p.G390_splice|XRCC6_uc011apc.1_Splice_Site_p.G381_splice|XRCC6_uc003baq.1_Splice_Site_p.G431_splice|XRCC6_uc003bar.1_Splice_Site_p.G431_splice|XRCC6_uc003bas.1_Splice_Site_p.G381_splice	NM_001469	NP_001460	P12956	XRCC6_HUMAN	ATP-dependent DNA helicase II, 70 kDa subunit						DNA ligation|double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|provirus integration|telomere maintenance|transcription, DNA-dependent	DNA-dependent protein kinase-DNA ligase 4 complex|Ku70:Ku80 complex|membrane fraction|nuclear telomere cap complex|transcription factor complex	5'-deoxyribose-5-phosphate lyase activity|ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|transcription regulatory region DNA binding			skin(2)|ovary(1)|lung(1)|kidney(1)	5						CCTTTCTTCAGGCTTCCAGCT	0.318								Direct_reversal_of_damage|NHEJ					5	45					0.0215528	0.0218585	1	1	0	
ATXN10	25814	broad.mit.edu	37	22	46114329	46114329	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:46114329G>A	uc003bgm.1	+	6	941	c.684G>A	c.(682-684)CCG>CCA	p.P228P	ATXN10_uc011aqt.1_Silent_p.P164P|ATXN10_uc003bgn.1_Silent_p.P39P	NM_013236	NP_037368	Q9UBB4	ATX10_HUMAN	ataxin 10	228					cell death|neuron projection development	dendrite|neuronal cell body|perinuclear region of cytoplasm				ovary(1)|kidney(1)	2		Ovarian(80;0.00973)|all_neural(38;0.0417)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0223)		TGAAAAGCCCGGAATTGGTAC	0.413													23	106					0	0	1	0	0	
PLXNB2	23654	broad.mit.edu	37	22	50718919	50718919	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr22:50718919T>C	uc003bkv.3	-	25	4280	c.4174A>G	c.(4174-4176)AGG>GGG	p.R1392G	PLXNB2_uc003bkt.1_Missense_Mutation_p.R184G|PLXNB2_uc003bku.1_Missense_Mutation_p.R377G	NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	1392	Cytoplasmic (Potential).				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		cATGTGCACCTGCGCAGCATC	0.547													11	54					0	0	1	0	0	
RAD18	56852	broad.mit.edu	37	3	9000630	9000630	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:9000630A>G	uc003brd.2	-	2	184	c.107T>C	c.(106-108)ATG>ACG	p.M36T	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	36	RING-type.				DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		AGGTATTATCATTGCAATGTT	0.323								Rad6_pathway					7	158					0	0	1	0	0	
TMEM43	79188	broad.mit.edu	37	3	14174093	14174093	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:14174093A>G	uc003byk.2	+	5	694	c.440A>G	c.(439-441)TAC>TGC	p.Y147C	TMEM43_uc003byl.1_Missense_Mutation_p.Y27C	NM_024334	NP_077310	Q9BTV4	TMM43_HUMAN	transmembrane protein 43	147	Lumenal (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nuclear inner membrane				ovary(1)	1						AGGTATTCCTACAGTGAGTGC	0.627													8	45					0	0	1	0	0	
EFHB	151651	broad.mit.edu	37	3	19930097	19930097	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:19930097T>C	uc003cbl.3	-	10	1968	c.1772A>G	c.(1771-1773)GAC>GGC	p.D591G	EFHB_uc003cbm.2_Missense_Mutation_p.D461G	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	591	EF-hand 1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						GTTGGCCTGGTCACAAGCTTC	0.423													3	13					0	0	1	0	0	
NR1D2	9975	broad.mit.edu	37	3	24006563	24006563	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:24006563A>C	uc003ccs.2	+	6	1561	c.1242A>C	c.(1240-1242)AAA>AAC	p.K414N	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.K339N	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	414					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						CAGCAGTGAAAGAAGTGGTGG	0.428													12	138					0	0	1	0	0	
ZNF860	344787	broad.mit.edu	37	3	32031859	32031859	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:32031859A>G	uc011axg.1	+	2	1837	c.1288A>G	c.(1288-1290)AAA>GAA	p.K430E		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	430	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAAGTGTAATAAATGTGGCAA	0.353													6	29					0	0	1	0	0	
ZNF860	344787	broad.mit.edu	37	3	32032011	32032011	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:32032011A>C	uc011axg.1	+	2	1989	c.1440A>C	c.(1438-1440)AAA>AAC	p.K480N		NM_001137674	NP_001131146	A6NHJ4	ZN860_HUMAN	zinc finger protein 860	480					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTGGAGAGAAACCTTACAAGT	0.408													6	71					0	0	1	0	0	
TRANK1	9881	broad.mit.edu	37	3	36887887	36887887	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:36887887G>A	uc003cgj.2	-	7	3563	c.3261C>T	c.(3259-3261)AAC>AAT	p.N1087N		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1637					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCAGCTCTCCGTTGAGGAGCT	0.448													3	33					0	0	1	0	0	
SCN10A	6336	broad.mit.edu	37	3	38739912	38739912	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:38739912A>T	uc003ciq.2	-	27	4799	c.4799T>A	c.(4798-4800)CTC>CAC	p.L1600H		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1600	IV.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGACATCATGAGGGCAAAGAG	0.557													16	94					0	0	1	0	0	
SCN11A	11280	broad.mit.edu	37	3	38889155	38889155	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:38889155C>T	uc011ays.1	-	26	4605	c.4406G>A	c.(4405-4407)CGG>CAG	p.R1469Q		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1469	IV.|Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCGGCCAATCCGAGCCAAGCG	0.493													6	40					0	0	1	0	0	
ZNF167	55888	broad.mit.edu	37	3	44598809	44598809	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:44598809G>T	uc010hin.2	+	2	658	c.270G>T	c.(268-270)AAG>AAT	p.K90N	ZNF167_uc003cnh.2_RNA|ZNF167_uc003cni.2_Missense_Mutation_p.K90N|ZNF167_uc010hio.2_Intron|ZNF167_uc003cnj.2_Missense_Mutation_p.K90N|ZNF167_uc003cnk.2_Missense_Mutation_p.K90N	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	90	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		TGCACACCAAGGAGCAGATCC	0.617													16	58					8.60227e-14	9.68602e-14	1	1	0	
LTF	4057	broad.mit.edu	37	3	46491433	46491433	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:46491433G>A	uc003cpq.2	-	8	1006	c.968C>T	c.(967-969)GCC>GTC	p.A323V	LTF_uc003fzr.2_Missense_Mutation_p.A279V|LTF_uc010hjh.2_Missense_Mutation_p.A323V|LTF_uc003cpr.2_Missense_Mutation_p.A310V	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	323	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	AAACCCAATGGCAGAGTCCTT	0.493													7	72					0	0	1	0	0	
CSPG5	10675	broad.mit.edu	37	3	47619224	47619224	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:47619224T>C	uc003crp.3	-	2	468	c.292A>G	c.(292-294)ACC>GCC	p.T98A	CSPG5_uc003crn.2_5'UTR|CSPG5_uc003cro.3_Missense_Mutation_p.T98A|CSPG5_uc011bbb.1_5'UTR	NM_006574	NP_006565	O95196	CSPG5_HUMAN	chondroitin sulfate proteoglycan 5 (neuroglycan	98	Extracellular (Potential).				cell differentiation|intracellular transport|nervous system development|regulation of growth	endoplasmic reticulum membrane|Golgi-associated vesicle membrane|integral to plasma membrane|membrane fraction	growth factor activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000266)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		AGCCAGGCGGTGCCGGTCACC	0.726													5	61					0	0	1	0	0	
DHX30	22907	broad.mit.edu	37	3	47890542	47890542	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:47890542T>C	uc003cru.2	+	18	3328	c.2902T>C	c.(2902-2904)TAC>CAC	p.Y968H	DHX30_uc003crt.2_Missense_Mutation_p.Y929H|MIR1226_hsa-mir-1226|MI0006313_5'Flank	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	968						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		AAACCTGCTGTACGCACCCAG	0.652													10	63					0	0	1	0	0	
RBM6	10180	broad.mit.edu	37	3	50005505	50005505	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:50005505G>A	uc003cyc.2	+	3	780	c.647G>A	c.(646-648)AGG>AAG	p.R216K	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	216					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		TCTGATTTTAGGAATAGAGAT	0.428													11	69					0	0	1	0	0	
TKT	7086	broad.mit.edu	37	3	53289886	53289886	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:53289886T>C	uc003dgo.2	-	1	183	c.73A>G	c.(73-75)AGC>GGC	p.S25G	TKT_uc011beo.1_5'UTR|TKT_uc003dgq.2_Missense_Mutation_p.S25G|TKT_uc011beq.1_Missense_Mutation_p.S25G|TKT_uc011ber.1_5'UTR|TKT_uc011bep.1_Missense_Mutation_p.S25G	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	25					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	TGGATGGAGCTGATACGTAGG	0.522													6	23					0	0	1	0	0	
TMF1	7110	broad.mit.edu	37	3	69077408	69077408	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:69077408A>G	uc003dnn.2	-	12	2880	c.2633T>C	c.(2632-2634)GTA>GCA	p.V878A	TMF1_uc011bfx.1_Missense_Mutation_p.V881A	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	878	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		AAGTGTTCTTACATATTCATC	0.353													4	50					0	0	1	0	0	
PDZRN3	23024	broad.mit.edu	37	3	73433995	73433995	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:73433995G>A	uc003dpl.1	-	10	1818	c.1722C>T	c.(1720-1722)ACC>ACT	p.T574T	PDZRN3_uc011bgh.1_Silent_p.T231T|PDZRN3_uc010hoe.1_Silent_p.T272T|PDZRN3_uc011bgf.1_Silent_p.T291T|PDZRN3_uc011bgg.1_Silent_p.T294T	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	574							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TGCTCTCGTCGGTCCGCCCCA	0.597													5	33					0	0	1	0	0	
ROBO1	6091	broad.mit.edu	37	3	78663796	78663796	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:78663796A>G	uc003dqe.2	-	28	4643	c.4435_splice	c.e28+1	p.D1479_splice	ROBO1_uc003dqb.2_Splice_Site_p.D1440_splice|ROBO1_uc003dqc.2_Splice_Site_p.D1379_splice|ROBO1_uc003dqd.2_Splice_Site_p.D1434_splice|ROBO1_uc010hoh.2_Splice_Site_p.D671_splice|ROBO1_uc011bgl.1_Splice_Site_p.D1051_splice	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a						activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CAATGGACTCACCATCTGTGT	0.463													5	21					0	0	1	0	0	
EPHA3	2042	broad.mit.edu	37	3	89445043	89445043	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:89445043T>G	uc003dqy.2	+	6	1588	c.1363T>G	c.(1363-1365)TTG>GTG	p.L455V	EPHA3_uc003dqx.1_Missense_Mutation_p.L455V|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	455	Extracellular (Potential).|Fibronectin type-III 2.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TAGCATCTCTTTGTCCTGGCA	0.453										TSP Lung(6;0.00050)			22	119					0	0	1	0	0	
EPHA3	2042	broad.mit.edu	37	3	89528603	89528603	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:89528603G>A	uc003dqy.2	+	17	3128	c.2903G>A	c.(2902-2904)AGC>AAC	p.S968N	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	968	Cytoplasmic (Potential).|SAM.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ATCATCAGTAGCATTAAAGCT	0.458										TSP Lung(6;0.00050)			3	38					0	0	1	0	0	
OR5K3	403277	broad.mit.edu	37	3	98110108	98110108	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:98110108T>G	uc011bgw.1	+	1	599	c.599T>G	c.(598-600)TTT>TGT	p.F200C		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTGGTGTTATTTATCTTGGCA	0.313													5	47					0	0	1	0	0	
CEP97	79598	broad.mit.edu	37	3	101475941	101475941	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:101475941A>G	uc003dvk.1	+	8	955	c.928A>G	c.(928-930)AAT>GAT	p.N310D	CEP97_uc010hpm.1_Missense_Mutation_p.N276D|CEP97_uc011bhf.1_Missense_Mutation_p.N310D|CEP97_uc003dvl.1_Missense_Mutation_p.N6D|CEP97_uc003dvm.1_Missense_Mutation_p.N148D	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	310	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						CCAAAGCCAAAATGAAGAGTT	0.398													13	49					0	0	1	0	0	
NFKBIZ	64332	broad.mit.edu	37	3	101574022	101574022	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:101574022T>C	uc003dvp.2	+	7	1675	c.1560T>C	c.(1558-1560)TGT>TGC	p.C520C	NFKBIZ_uc003dvo.2_Silent_p.C420C|NFKBIZ_uc010hpo.2_Silent_p.C420C|NFKBIZ_uc003dvq.2_Silent_p.C398C	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	520	Interaction with NFKB1/p50 (By similarity).|ANK 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						TGCATGTGTGTGCTGAGAAGG	0.532													16	59					0	0	1	0	0	
DZIP3	9666	broad.mit.edu	37	3	108363596	108363596	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:108363596T>C	uc003dxd.2	+	14	2149	c.1727T>C	c.(1726-1728)ATC>ACC	p.I576T	DZIP3_uc003dxf.1_Missense_Mutation_p.I576T|DZIP3_uc011bhm.1_Missense_Mutation_p.I27T|DZIP3_uc003dxe.1_Missense_Mutation_p.I576T|DZIP3_uc003dxg.1_Missense_Mutation_p.I299T	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	576					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GTACCAGAAATCATACAGAGG	0.284													10	104					0	0	1	0	0	
DPPA4	55211	broad.mit.edu	37	3	109050613	109050613	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:109050613G>A	uc003dxq.3	-	4	413	c.358C>T	c.(358-360)CGC>TGC	p.R120C	DPPA4_uc011bho.1_Missense_Mutation_p.R120C|DPPA4_uc011bhp.1_Missense_Mutation_p.R120C	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	120						nucleus	protein binding			upper_aerodigestive_tract(1)	1						GCACACAGGCGCTTATATGCA	0.433													6	124					0	0	1	0	0	
PRR23A	729627	broad.mit.edu	37	3	138724615	138724615	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:138724615C>G	uc011bms.1	-	1	496	c.496G>C	c.(496-498)GAG>CAG	p.E166Q		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	166											0						ATCTGGAGCTCCGGAAACTCG	0.652													18	24					0	0	1	0	0	
PRR23A	729627	broad.mit.edu	37	3	138724709	138724709	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:138724709G>A	uc011bms.1	-	1	402	c.402C>T	c.(400-402)GAC>GAT	p.D134D		NM_001134659	NP_001128131	A6NEV1	PR23A_HUMAN	proline rich 23A	134											0						CAACGACGACGTCCTCCCTGA	0.637													5	27					0	0	1	0	0	
CLSTN2	64084	broad.mit.edu	37	3	140122478	140122478	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:140122478C>T	uc003etn.2	+	3	430	c.240C>T	c.(238-240)ATC>ATT	p.I80I	CLSTN2_uc003etm.2_Silent_p.I80I	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	80	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CAGGGGAAATCTGTGCGTTCA	0.532										HNSCC(16;0.037)			30	181					0	0	1	0	0	
ZBTB38	253461	broad.mit.edu	37	3	141164211	141164211	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:141164211G>A	uc003etw.2	+	8	3963	c.2981G>A	c.(2980-2982)GGG>GAG	p.G994E	ZBTB38_uc010hun.2_Missense_Mutation_p.G991E|ZBTB38_uc010huo.2_Missense_Mutation_p.G994E|ZBTB38_uc003ety.2_Missense_Mutation_p.G994E|ZBTB38_uc010hup.2_Missense_Mutation_p.G995E	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	994					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AAAGCAGTGGGGGCTGGAAAC	0.542													9	22					0	0	1	0	0	
MED12L	116931	broad.mit.edu	37	3	151083753	151083753	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:151083753T>G	uc003eyp.2	+	21	3234	c.3196T>G	c.(3196-3198)TTT>GTT	p.F1066V	MED12L_uc011bnz.1_Missense_Mutation_p.F926V|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.F229V	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1066					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CGTGTGGGGGTTTAATGATGT	0.368													65	85					0	0	1	0	0	
GPR149	344758	broad.mit.edu	37	3	154147110	154147110	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:154147110C>G	uc003faa.2	-	1	395	c.295G>C	c.(295-297)GGT>CGT	p.G99R		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	99	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TGGAAGTAACCGGGGACCTCG	0.488													15	145					0	0	1	0	0	
MIR720	100302198	broad.mit.edu	37	3	164059186	164059186	+	RNA	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:164059186G>T	hsa-mir-720|MI0006654	+			c.58G>T																				0						gttgtgcccaggggtgttaga	0													3	9					0.184627	0.184627	1	1	0	
SI	6476	broad.mit.edu	37	3	164755788	164755788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:164755788G>A	uc003fei.2	-	21	2388	c.2326C>T	c.(2326-2328)CAA>TAA	p.Q776*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	776	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCAACCCGTTGTTTCCTCCAT	0.343										HNSCC(35;0.089)			6	74					0	0	1	0	0	
WDR49	151790	broad.mit.edu	37	3	167277983	167277983	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:167277983A>G	uc003fev.1	-	5	826	c.520T>C	c.(520-522)TTC>CTC	p.F174L	WDR49_uc003feu.1_5'UTR|WDR49_uc011bpd.1_Missense_Mutation_p.F227L|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	174	WD 3.									large_intestine(1)|ovary(1)|skin(1)	3						ATCATCCAGAAGGAAACAGTA	0.378													22	73					0	0	1	0	0	
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:178952085A>G	uc003fjk.2	+	21	3297	c.3140A>G	c.(3139-3141)CAT>CGT	p.H1047R		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1047	PI3K/PI4K.		H -> L (in cancer).|H -> R (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; requires binding to p85 regulatory subunit to induce cellular transformation but not interaction with RAS; may mimic the conformatitonal change triggered by the interaction with RAS; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells; increases lipid kinase activity; may alter the interaction of the PI3K/ PI4K kinase domain with the cell membrane).|H -> Y (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.H1047R(1269)|p.H1047L(152)|p.H1047Y(31)|p.H1047Q(3)|p.H1047T(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AATGATGCACATCATGGTGGC	0.378	H1047R(BT20_BREAST)|H1047R(NCIH1048_LUNG)|H1047R(MCAS_OVARY)|H1047R(HCC1954_BREAST)|H1047R(RKO_LARGE_INTESTINE)|H1047L(EFM19_BREAST)|H1047R(CAL33_UPPER_AERODIGESTIVE_TRACT)|H1047R(CAL29_URINARY_TRACT)|H1047R(DETROIT562_UPPER_AERODIGESTIVE_TRACT)|H1047R(LS180_LARGE_INTESTINE)|H1047R(T47D_BREAST)|H1047R(HCT116_LARGE_INTESTINE)|H1047R(HSC2_UPPER_AERODIGESTIVE_TRACT)|H1047R(SKOV3_OVARY)|H1047R(MDAMB453_BREAST)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			26	95					0	0	1	0	0	
KLHL6	89857	broad.mit.edu	37	3	183225953	183225953	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:183225953G>T	uc003flr.2	-	3	861	c.803C>A	c.(802-804)CCG>CAG	p.P268Q	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Missense_Mutation_p.P266Q	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	268	BACK.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			AAAGTACCACGGGTCCAGAAG	0.577													10	133					1.41608e-15	1.59658e-15	1	1	0	
KLHL6	89857	broad.mit.edu	37	3	183245660	183245660	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:183245660C>A	uc003flr.2	-	2	490	c.432G>T	c.(430-432)CGG>CGT	p.R144R	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Silent_p.R142R	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	144										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			CCTCCAGGACCCGCTGGACAT	0.512													9	83					3.09899e-07	3.34457e-07	1	1	0	
ABCC5	10057	broad.mit.edu	37	3	183643441	183643441	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:183643441T>C	uc003fmg.2	-	29	4279	c.4114A>G	c.(4114-4116)ATC>GTC	p.I1372V	ABCC5_uc011bqt.1_Missense_Mutation_p.I900V|ABCC5_uc010hxl.2_Missense_Mutation_p.I1329V	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	1372	ABC transporter 2.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GCTTCTCGGATGGTCTCTTGA	0.498													7	95					0	0	1	0	0	
EIF2B5	8893	broad.mit.edu	37	3	183860111	183860111	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:183860111C>T	uc003fmp.2	+	9	1753	c.1389C>T	c.(1387-1389)GGC>GGT	p.G463G	EIF2B5_uc003fmq.2_Silent_p.G184G|EIF2B5_uc003fmr.2_5'Flank	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	463					astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			AAGATGATGGCGAGTTCAGTG	0.517													9	77					0	0	1	0	0	
DVL3	1857	broad.mit.edu	37	3	183885371	183885371	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:183885371T>C	uc003fms.2	+	12	1342	c.1202T>C	c.(1201-1203)CTA>CCA	p.L401P	DVL3_uc011bqw.1_Missense_Mutation_p.L384P|DVL3_uc003fmt.2_Missense_Mutation_p.L72P|DVL3_uc003fmu.2_Missense_Mutation_p.L233P	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	401					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCCCCAGGCCTAGACGACTTC	0.328													8	62					0	0	1	0	0	
ECE2	9718	broad.mit.edu	37	3	184009927	184009927	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:184009927C>T	uc003fni.3	+	19	2591	c.2553C>T	c.(2551-2553)CGC>CGT	p.R851R	ECE2_uc003fnl.3_Silent_p.R779R|ECE2_uc003fnm.3_Silent_p.R733R|ECE2_uc003fnk.3_Silent_p.R704R	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	851	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCCGCTTCCGCGTGCTGGGCA	0.672													21	85					0	0	1	0	0	
HRASLS	57110	broad.mit.edu	37	3	192973483	192973483	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:192973483C>T	uc003fta.2	+	2	449	c.44C>T	c.(43-45)CCC>CTC	p.P15L		NM_020386	NP_065119	Q9HDD0	HRSL1_HUMAN	HRAS-like suppressor	15											0	all_cancers(143;9.1e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000159)		CCTGGCAACCCCTGCCCAGGG	0.468													7	188					0	0	1	0	0	
ATP13A3	79572	broad.mit.edu	37	3	194158139	194158139	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:194158139G>A	uc003fty.3	-	18	2302	c.1900C>T	c.(1900-1902)CGT>TGT	p.R634C	ATP13A3_uc003ftz.1_Missense_Mutation_p.R340C	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	634					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		ACACTCATACGTTGCAAAGCA	0.458													20	87					0	0	1	0	0	
C3orf21	152002	broad.mit.edu	37	3	194790641	194790641	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:194790641C>T	uc003fum.3	-	4	1093	c.985G>A	c.(985-987)GGG>AGG	p.G329R	C3orf21_uc003ful.2_Missense_Mutation_p.G126R|C3orf21_uc003fuk.2_Missense_Mutation_p.G123R	NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	329						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		TCCTGGTCCCCGAGGTGGCCG	0.652													12	71					0	0	1	0	0	
MUC4	4585	broad.mit.edu	37	3	195474070	195474070	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:195474070T>C	uc011bto.1	-	26	16292	c.15832A>G	c.(15832-15834)AAC>GAC	p.N5278D	MUC4_uc010hzq.2_Missense_Mutation_p.N263D|MUC4_uc003fuz.2_Missense_Mutation_p.N1004D|MUC4_uc003fva.2_Missense_Mutation_p.N886D|MUC4_uc003fvb.2_Missense_Mutation_p.N922D|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Missense_Mutation_p.N922D|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_Missense_Mutation_p.N886D|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.N970D|MUC4_uc011bti.1_Missense_Mutation_p.N970D|MUC4_uc011btj.1_Missense_Mutation_p.N1147D|MUC4_uc011btk.1_Missense_Mutation_p.N886D|MUC4_uc011btl.1_Missense_Mutation_p.N915D|MUC4_uc011btm.1_Missense_Mutation_p.N1095D|MUC4_uc011btn.1_Missense_Mutation_p.N886D|MUC4_uc003fvo.2_Missense_Mutation_p.N1170D|MUC4_uc003fvp.2_Missense_Mutation_p.N1119D	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	2163					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TCAGCTGAGTTCAGGAAATAG	0.602													9	178					0	0	1	0	0	
SDHAP1	255812	broad.mit.edu	37	3	195701416	195701416	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr3:195701416G>A	uc011btq.1	-	8	1077	c.448C>T	c.(448-450)CAG>TAG	p.Q150*	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						ATCTGATCCTGGCCATTCCCG	0.587													12	69					0	0	1	0	0	
HTT	3064	broad.mit.edu	37	4	3146957	3146957	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:3146957T>C	uc011bvq.1	+	25	3294	c.3149_splice	c.e25+2	p.G1050_splice		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin						establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GCACTGTGGGTATGTATTTTC	0.343													6	74					0	0	1	0	0	
SLIT2	9353	broad.mit.edu	37	4	20568977	20568977	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:20568977T>G	uc003gpr.1	+	27	3022	c.2818T>G	c.(2818-2820)TTT>GTT	p.F940V	SLIT2_uc003gps.1_Missense_Mutation_p.F932V	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	940	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TCCAGTTGACTTTTACCGATG	0.383													21	114					0	0	1	0	0	
PCDH7	5099	broad.mit.edu	37	4	30725990	30725990	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:30725990C>T	uc003gsk.1	+	1	3954	c.2946C>T	c.(2944-2946)TCC>TCT	p.S982S	PCDH7_uc011bxw.1_Silent_p.S935S|PCDH7_uc011bxx.1_Silent_p.S982S	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	982	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						GATACAGGTCCGTTAATGGTG	0.522													16	43					0	0	1	0	0	
UGT2B28	54490	broad.mit.edu	37	4	70160477	70160477	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:70160477T>G	uc003hej.2	+	6	1542	c.1540T>G	c.(1540-1542)TTT>GTT	p.F514V	UGT2B28_uc010ihr.2_3'UTR	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	514	Helical; (Potential).				xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	GTTTTGTCTGTTTTGTTTCTG	0.433													6	75					0	0	1	0	0	
GRSF1	2926	broad.mit.edu	37	4	71701916	71701916	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:71701916G>T	uc010iia.1	-	2	556	c.473C>A	c.(472-474)CCC>CAC	p.P158H	GRSF1_uc011caz.1_Missense_Mutation_p.P40H|GRSF1_uc003hfs.2_5'UTR	NM_002092	NP_002083	Q12849	GRSF1_HUMAN	G-rich RNA sequence binding factor 1 isoform 1	158	RRM 1.				mRNA polyadenylation		mRNA binding|nucleotide binding				0		all_hematologic(202;0.21)	Lung(101;0.235)			GCATGACCAGGGCAGTCCTTG	0.383													4	23					0.00909568	0.00930166	1	1	0	
FRAS1	80144	broad.mit.edu	37	4	79429907	79429907	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:79429907A>C	uc003hlb.2	+	63	9967	c.9527A>C	c.(9526-9528)GAC>GCC	p.D3176A	FRAS1_uc003hlc.1_Missense_Mutation_p.D178A	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	3171	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCTGACTATGACCATGTGGAA	0.512													3	27					0	0	1	0	0	
WDFY3	23001	broad.mit.edu	37	4	85654581	85654581	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:85654581T>C	uc003hpd.2	-	44	7583	c.7175A>G	c.(7174-7176)AAC>AGC	p.N2392S	WDFY3_uc003hpe.1_Missense_Mutation_p.N20S	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2392						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		AGGGTAATGGTTATAAAACAT	0.463													36	226					0	0	1	0	0	
WDFY3	23001	broad.mit.edu	37	4	85707266	85707266	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:85707266C>A	uc003hpd.2	-	24	4336	c.3928G>T	c.(3928-3930)GTG>TTG	p.V1310L		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1310						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GGGGATGGCACCACCCCTTCG	0.388													12	54					6.40141e-05	6.74743e-05	1	1	0	
PTPN13	5783	broad.mit.edu	37	4	87735668	87735668	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:87735668A>G	uc003hpz.2	+	48	7902	c.7422A>G	c.(7420-7422)GAA>GAG	p.E2474E	PTPN13_uc003hpy.2_Silent_p.E2479E|PTPN13_uc003hqa.2_Silent_p.E2455E|PTPN13_uc003hqb.2_Silent_p.E2283E	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	2474				E->D: No effect on substrate affinity.		cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TTCAAGCAGAAGAAGAGCAAA	0.408													8	34					0	0	1	0	0	
GRID2	2895	broad.mit.edu	37	4	94690430	94690430	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:94690430G>A	uc011cdt.1	+	15	2688	c.2430G>A	c.(2428-2430)CAG>CAA	p.Q810Q	GRID2_uc011cdu.1_Silent_p.Q715Q	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	810	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGAATGGCCAGTGTGACCTGT	0.488													33	59					0	0	1	0	0	
PDLIM5	10611	broad.mit.edu	37	4	95506806	95506806	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:95506806T>C	uc003hti.2	+	6	952	c.801T>C	c.(799-801)GAT>GAC	p.D267D	PDLIM5_uc003htf.2_Silent_p.D144D|PDLIM5_uc003htg.2_Silent_p.D164D|PDLIM5_uc011cdx.1_Silent_p.D164D|PDLIM5_uc003hth.2_Silent_p.D158D|PDLIM5_uc003htj.2_5'UTR|PDLIM5_uc003htk.2_Silent_p.D164D|PDLIM5_uc011cdy.1_Silent_p.D145D|PDLIM5_uc003htl.2_5'UTR	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	267					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		TGATTGAGGATACTGAAGACT	0.468													6	64					0	0	1	0	0	
C4orf17	84103	broad.mit.edu	37	4	100460468	100460468	+	Silent	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:100460468A>C	uc003huw.2	+	7	1100	c.777A>C	c.(775-777)CCA>CCC	p.P259P	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	259											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		AATTGCCCCCAAATTTTACTG	0.468													32	67					0	0	1	0	0	
PPP3CA	5530	broad.mit.edu	37	4	101961640	101961640	+	Nonsense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:101961640T>A	uc011cen.1	-	11	1915	c.1240A>T	c.(1240-1242)AGA>TGA	p.R414*	PPP3CA_uc003hvu.2_Nonsense_Mutation_p.R414*|PPP3CA_uc010ilj.2_Nonsense_Mutation_p.R372*|PPP3CA_uc003hvt.2_Nonsense_Mutation_p.R401*|PPP3CA_uc003hvs.2_Nonsense_Mutation_p.R347*|PPP3CA_uc010ilk.2_Nonsense_Mutation_p.R182*	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	414	Calmodulin-binding (Potential).				protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		TGCACCCACCTGAGCACTGAG	0.378													12	61					0	0	1	0	0	
C4orf21	55345	broad.mit.edu	37	4	113524722	113524722	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:113524722T>C	uc003iau.2	-	10	3145	c.2934A>G	c.(2932-2934)ACA>ACG	p.T978T	C4orf21_uc003iaw.2_Silent_p.T978T	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	Error:Variant_position_missing_in_Q6ZU11_after_alignment						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GTAACTCTGGTGTCTCTGTCA	0.383													7	62					0	0	1	0	0	
NDST4	64579	broad.mit.edu	37	4	115773957	115773957	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:115773957T>C	uc003ibu.2	-	8	2419	c.1740A>G	c.(1738-1740)CGA>CGG	p.R580R	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	580	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TGTCTTTGTGTCGTTTATCAT	0.368													4	40					0	0	1	0	0	
KIAA1109	84162	broad.mit.edu	37	4	123283396	123283396	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:123283396A>G	uc003ieh.2	+	84	15057	c.15012A>G	c.(15010-15012)GAA>GAG	p.E5004E	KIAA1109_uc003iem.2_Silent_p.E1360E	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	5004					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ACAAAGAAGAACACTAAAAAA	0.303													3	42					0	0	1	0	0	
ADAD1	132612	broad.mit.edu	37	4	123336654	123336654	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:123336654T>C	uc003ieo.2	+	11	1602	c.1370T>C	c.(1369-1371)GTA>GCA	p.V457A	ADAD1_uc003iep.2_Missense_Mutation_p.V446A|ADAD1_uc003ieq.2_Missense_Mutation_p.V439A	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	457	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						ATTAGTTTAGTACCCTCTGCA	0.393													6	195					0	0	1	0	0	
ADAD1	132612	broad.mit.edu	37	4	123342544	123342544	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:123342544A>C	uc003ieo.2	+	12	1848	c.1616A>C	c.(1615-1617)AAG>ACG	p.K539T	ADAD1_uc003iep.2_Missense_Mutation_p.K528T|ADAD1_uc003ieq.2_Missense_Mutation_p.K521T	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	539	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						CATGCAGCTAAGGTAAGTCCT	0.338													6	21					0	0	1	0	0	
NUDT6	11162	broad.mit.edu	37	4	123814250	123814250	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:123814250G>A	uc003iew.2	-	5	716	c.684C>T	c.(682-684)CGC>CGT	p.R228R	FGF2_uc003iev.1_3'UTR|NUDT6_uc003iex.2_Silent_p.R59R	NM_007083	NP_009014	P53370	NUDT6_HUMAN	nudix-type motif 6 isoform a	228	Nudix hydrolase.					mitochondrion|nucleus	growth factor activity|hydrolase activity				0						ATGGCTTTAGGCGGCAGATGA	0.418													9	120					0	0	1	0	0	
ANKRD50	57182	broad.mit.edu	37	4	125590260	125590260	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:125590260T>C	uc003ifg.3	-	3	4438	c.4172A>G	c.(4171-4173)CAG>CGG	p.Q1391R	ANKRD50_uc011cgo.1_Missense_Mutation_p.Q1212R|ANKRD50_uc010inw.2_Missense_Mutation_p.Q1391R	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1391										central_nervous_system(1)	1						CAACACTTCCTGATGCCCTCT	0.413													6	95					0	0	1	0	0	
HHIP	64399	broad.mit.edu	37	4	145640026	145640026	+	Splice_Site	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:145640026G>T	uc003ijs.1	+	11	2334	c.1679_splice	c.e11-1	p.G560_splice		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor							cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		TTCTTTAACAGGTGAAGTTTA	0.333													4	49					0.014758	0.0150206	1	1	0	
ABCE1	6059	broad.mit.edu	37	4	146025624	146025624	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:146025624A>G	uc003ijx.2	+	2	500	c.60A>G	c.(58-60)AAA>AAG	p.K20K	ABCE1_uc003ijy.2_Silent_p.K20K|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	20	4Fe-4S ferredoxin-type 1.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					AACCTAAGAAATGTCGACAGG	0.363													12	46					0	0	1	0	0	
FHDC1	85462	broad.mit.edu	37	4	153897212	153897212	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:153897212A>G	uc003inf.2	+	11	2844	c.2769A>G	c.(2767-2769)TCA>TCG	p.S923S		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	923					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CAGAGCTGTCATCCCGGGGGC	0.662													5	30					0	0	1	0	0	
GUCY1A3	2982	broad.mit.edu	37	4	156618035	156618035	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:156618035C>T	uc003iov.2	+	4	552	c.16C>T	c.(16-18)CTC>TTC	p.L6F	GUCY1A3_uc003iou.2_Missense_Mutation_p.L6F|GUCY1A3_uc010iqc.2_Missense_Mutation_p.L6F|GUCY1A3_uc003iow.2_Missense_Mutation_p.L6F|GUCY1A3_uc010iqd.2_Missense_Mutation_p.L6F|GUCY1A3_uc003iox.2_Missense_Mutation_p.L6F|GUCY1A3_uc003ioz.2_Intron|GUCY1A3_uc003ioy.2_Missense_Mutation_p.L6F|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.L6F	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	6					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTGCACGAAGCTCAAGGATCT	0.493													5	39					0	0	1	0	0	
RAPGEF2	9693	broad.mit.edu	37	4	160273979	160273979	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:160273979T>C	uc003iqg.3	+	21	3835	c.3525T>C	c.(3523-3525)CAT>CAC	p.H1175H		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	1175					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		GCCAGAGGCATTCTGTCAGCA	0.483													7	58					0	0	1	0	0	
GK3P	2713	broad.mit.edu	37	4	166199418	166199418	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:166199418G>T	uc003ird.3	-	1	1758	c.1380C>A	c.(1378-1380)GCC>GCA	p.A460A	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						CTGCCGCCATGGCAGCACCCA	0.512													3	30					0.004672	0.00481222	1	1	0	
SH3RF1	57630	broad.mit.edu	37	4	170028302	170028302	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:170028302G>A	uc003isa.1	-	11	2529	c.2194C>T	c.(2194-2196)CCC>TCC	p.P732S		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	732						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		GACACGCGGGGCTTCCGTTTA	0.532													7	65					0	0	1	0	0	
WDR17	116966	broad.mit.edu	37	4	177063174	177063174	+	Missense_Mutation	SNP	A	C	C	rs77119360		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:177063174A>C	uc003iuj.2	+	12	1711	c.1555A>C	c.(1555-1557)AAA>CAA	p.K519Q	WDR17_uc003iuk.2_Missense_Mutation_p.K495Q|WDR17_uc003ium.3_Missense_Mutation_p.K495Q|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	519	WD 9.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ACACAAATATAAACATCCAGC	0.259													4	91					0	0	1	0	0	
NEIL3	55247	broad.mit.edu	37	4	178283481	178283481	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:178283481G>A	uc003iut.2	+	10	1791	c.1674G>A	c.(1672-1674)AAG>AAA	p.K558K		NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	558					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		ACCATGGCAAGCGTTCCACCA	0.373								BER_DNA_glycosylases					8	44					0	0	1	0	0	
CDKN2AIP	55602	broad.mit.edu	37	4	184367704	184367704	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:184367704G>T	uc003ivp.1	+	3	1029	c.867G>T	c.(865-867)GAG>GAT	p.E289D	CDKN2AIP_uc003ivq.1_Missense_Mutation_p.E34D	NM_017632	NP_060102	Q9NXV6	CARF_HUMAN	CDKN2A interacting protein	289	Ser-rich.				negative regulation of cell growth|positive regulation of signal transduction|regulation of protein stability	granular component|nucleoplasm	double-stranded RNA binding|p53 binding				0		all_lung(41;6.9e-12)|Lung NSC(41;1.28e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		CAGAGATCGAGGTGCCCTTGT	0.468													3	38					0.004672	0.00481222	1	1	0	
MTNR1A	4543	broad.mit.edu	37	4	187454870	187454870	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr4:187454870A>G	uc003izd.1	-	2	1044	c.1026T>C	c.(1024-1026)AAT>AAC	p.N342N		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	342	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	TTACTACATTATTGTTGGTCA	0.502													20	62					0	0	1	0	0	
CEP72	55722	broad.mit.edu	37	5	635522	635522	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:635522T>C	uc003jbf.2	+	6	799	c.727T>C	c.(727-729)TAC>CAC	p.Y243H	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	243					G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			GTTGGTACAGTACCAGTGTGG	0.443													8	27					0	0	1	0	0	
IRX2	153572	broad.mit.edu	37	5	2749639	2749639	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:2749639C>T	uc003jda.2	-	2	754	c.512G>A	c.(511-513)CGC>CAC	p.R171H	C5orf38_uc003jdc.2_5'Flank|C5orf38_uc011cmg.1_5'Flank|C5orf38_uc011cmh.1_5'Flank|C5orf38_uc011cmi.1_5'Flank|C5orf38_uc011cmj.1_5'Flank|IRX2_uc003jdb.2_Missense_Mutation_p.R171H	NM_001134222	NP_001127694	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	171	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1				GBM - Glioblastoma multiforme(108;0.204)		CTTCTTGAGGCGCCGGCGCGC	0.592													22	100					0	0	1	0	0	
SEMA5A	9037	broad.mit.edu	37	5	9108296	9108296	+	Missense_Mutation	SNP	G	A	A	rs147869499		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:9108296G>A	uc003jek.2	-	16	2741	c.2029C>T	c.(2029-2031)CGC>TGC	p.R677C		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	677	TSP type-1 3.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CAGATCCTGCGGCGAGCTTGA	0.562													3	24					0	0	1	0	0	
CDH18	1016	broad.mit.edu	37	5	19503152	19503152	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:19503152G>A	uc003jgc.2	-	10	1956	c.1579C>T	c.(1579-1581)CTT>TTT	p.L527F	CDH18_uc003jgd.2_Missense_Mutation_p.L527F|CDH18_uc011cnm.1_Missense_Mutation_p.L527F	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	527	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CGTTCATCAAGAAAGAAGTTA	0.348													11	55					0	0	1	0	0	
RXFP3	51289	broad.mit.edu	37	5	33938167	33938167	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:33938167C>T	uc003jic.1	+	1	1679	c.1322C>T	c.(1321-1323)GCG>GTG	p.A441V		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	441	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						cacgcggccgcggAGCCGGAC	0.567													9	33					0	0	1	0	0	
SPEF2	79925	broad.mit.edu	37	5	35641676	35641676	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:35641676T>G	uc003jjo.2	+	3	416	c.305T>G	c.(304-306)ATT>AGT	p.I102S	SPEF2_uc003jjn.1_Missense_Mutation_p.I102S|SPEF2_uc003jjq.3_Missense_Mutation_p.I102S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	102	CH.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAATTGTACATTGCTCTTCAG	0.413													6	66					0	0	1	0	0	
SPEF2	79925	broad.mit.edu	37	5	35641743	35641743	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:35641743A>G	uc003jjo.2	+	3	483	c.372A>G	c.(370-372)ACA>ACG	p.T124T	SPEF2_uc003jjn.1_Silent_p.T124T|SPEF2_uc003jjq.3_Silent_p.T124T	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	124					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AACGTCTGACAAATTTAAGAC	0.348													3	51					0	0	1	0	0	
WDR70	55100	broad.mit.edu	37	5	37516665	37516665	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:37516665G>A	uc003jkv.2	+	9	948	c.890G>A	c.(889-891)GGA>GAA	p.G297E	WDR70_uc010iva.1_Missense_Mutation_p.G297E	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	297	WD 3.									ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAATAAAGGGAGAATTTATG	0.303													7	62					0	0	1	0	0	
CARD6	84674	broad.mit.edu	37	5	40853351	40853351	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:40853351A>G	uc003jmg.2	+	3	1992	c.1917A>G	c.(1915-1917)AGA>AGG	p.R639R		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	639					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CTTGCCTCAGATGTGTGTCTG	0.517													37	204					0	0	1	0	0	
RASGRF2	5924	broad.mit.edu	37	5	80388671	80388671	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:80388671G>A	uc003kha.1	+	10	1442	c.1442G>A	c.(1441-1443)CGC>CAC	p.R481H	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	481	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AGTAAAGTTCGCCTGGGTTCG	0.368													17	87					0	0	1	0	0	
SLCO6A1	133482	broad.mit.edu	37	5	101834355	101834355	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:101834355C>T	uc003knn.2	-	1	366	c.194G>A	c.(193-195)CGA>CAA	p.R65Q	SLCO6A1_uc003kno.2_Missense_Mutation_p.R65Q|SLCO6A1_uc003knp.2_Missense_Mutation_p.R65Q|SLCO6A1_uc003knq.2_Missense_Mutation_p.R65Q	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	65	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TTTCCTTTTTCGGAAACCGCC	0.542													75	135					0	0	1	0	0	
WDR36	134430	broad.mit.edu	37	5	110436294	110436294	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:110436294A>G	uc003kpd.2	+	5	701	c.584A>G	c.(583-585)TAC>TGC	p.Y195C	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	195	WD 1.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		GTAGAAGAATACCTGCAGTTG	0.264													4	11					0	0	1	0	0	
APC	324	broad.mit.edu	37	5	112174057	112174057	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:112174057T>C	uc010jby.2	+	16	3146	c.2766T>C	c.(2764-2766)CTT>CTC	p.L922L	APC_uc011cvt.1_Silent_p.L904L|APC_uc003kpz.3_Silent_p.L922L|APC_uc003kpy.3_Silent_p.L922L|APC_uc010jbz.2_Silent_p.L639L|APC_uc010jca.2_Silent_p.L222L	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	922	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GAAATGCACTTAGAAGAAGCT	0.393		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			9	31					0	0	1	0	0	
FTMT	94033	broad.mit.edu	37	5	121187884	121187884	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:121187884T>C	uc003kss.2	+	1	235	c.226T>C	c.(226-228)TCC>CCC	p.S76P		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	76	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CCACCCCGACTCCGAGGCTGC	0.682													3	43					0	0	1	0	0	
CTXN3	613212	broad.mit.edu	37	5	126993191	126993191	+	Translation_Start_Site	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:126993191C>A	uc003kul.3	+	3	552	c.-22C>A	c.(-24--20)TCCTG>TCATG		CTXN3_uc003kum.3_Translation_Start_Site	NM_001048252	NP_001041717	Q4LDR2	CTXN3_HUMAN	cortexin 3							integral to membrane					0		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0128)|COAD - Colon adenocarcinoma(49;0.0234)|OV - Ovarian serous cystadenocarcinoma(64;0.038)		CCAGGATATCCTGTGCTCTGG	0.532													5	37					0.00116845	0.00121814	1	1	0	
C5orf32	84418	broad.mit.edu	37	5	139574218	139574218	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:139574218G>T	uc003lfd.2	+	2	406	c.168G>T	c.(166-168)CAG>CAT	p.Q56H	C5orf32_uc010jfi.2_Intron	NM_032412	NP_115788	Q9H1C7	CE032_HUMAN	hypothetical protein LOC84418	56	Pro-rich.										0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGACCTCAGGAGCCTCCTA	0.532													5	47					0.184627	0.184627	1	1	0	
PCDHA9	9752	broad.mit.edu	37	5	140229950	140229950	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140229950G>A	uc003lhu.2	+	1	2594	c.1870G>A	c.(1870-1872)GTG>ATG	p.V624M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.V624M	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	624	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding	p.V624M(1)		large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCGTTCCGCGTGGGGCTGTA	0.672													10	120					0	0	1	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140249772	140249772	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140249772G>A	uc003lia.2	+	1	1942	c.1084G>A	c.(1084-1086)GCT>ACT	p.A362T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.A362T	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	362	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGAGAGGACGCTCAGCCCAG	0.572													7	90					0	0	1	0	0	
PCDHAC1	56135	broad.mit.edu	37	5	140308912	140308912	+	Splice_Site	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140308912T>C	uc003lih.2	+	1	2609	c.2433_splice	c.e1+2	p.M811_splice	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.V812A	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1						homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGCCATGGTAAGCAAATTT	0.403													8	183					0	0	1	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140516810	140516810	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140516810C>T	uc003liq.2	+	1	2011	c.1794C>T	c.(1792-1794)AAC>AAT	p.N598N		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	598	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGGCCAGAACGCCTGGCTGT	0.711													21	104					0	0	1	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140552971	140552971	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140552971C>T	uc003lit.2	+	1	729	c.555C>T	c.(553-555)AGC>AGT	p.S185S		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	185	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCATGATAGCGGGGAGGGGA	0.483													9	61					0	0	1	0	0	
PCDHB11	56125	broad.mit.edu	37	5	140580496	140580496	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140580496T>C	uc003liy.2	+	1	1149	c.1149T>C	c.(1147-1149)TGT>TGC	p.C383C	PCDHB11_uc011daj.1_Silent_p.C18C	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	383	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAATTGTTTGTTCCATTCCGG	0.448													14	138					0	0	1	0	0	
PCDHGA1	56114	broad.mit.edu	37	5	140711907	140711907	+	Silent	SNP	G	A	A	rs115095833	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140711907G>A	uc003lji.1	+	1	1656	c.1656G>A	c.(1654-1656)CTG>CTA	p.L552L	PCDHGA1_uc011dan.1_Silent_p.L552L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	552	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTATTCCTGCTGGACCAGA	0.637													52	273					0	0	1	0	0	
PCDHGB5	56101	broad.mit.edu	37	5	140778762	140778762	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140778762G>A	uc003lkf.1	+	1	1068	c.1068G>A	c.(1066-1068)GCG>GCA	p.A356A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.A356A	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	356	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAAAACGCGGTGCCTGGAA	0.373													15	71					0	0	1	0	0	
PCDHGA10	56106	broad.mit.edu	37	5	140794641	140794641	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:140794641G>A	uc003lkl.1	+	1	1899	c.1899G>A	c.(1897-1899)GCG>GCA	p.A633A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.A633A|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	633	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCGCACGGCGCGAGCCCTGC	0.697													39	78					0	0	1	0	0	
KIAA0141	9812	broad.mit.edu	37	5	141318154	141318154	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:141318154A>G	uc003lls.2	+	12	1500	c.1378A>G	c.(1378-1380)AAC>GAC	p.N460D	KIAA0141_uc003llt.2_Missense_Mutation_p.N460D|KIAA0141_uc003llu.1_RNA	NM_001142603	NP_001136075	Q14154	DELE_HUMAN	hypothetical protein LOC9812 precursor	460					apoptosis|regulation of caspase activity	mitochondrion	protein binding			skin(1)	1		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGCAGCTTGAACACCCTGCT	0.592													16	146					0	0	1	0	0	
RBM27	54439	broad.mit.edu	37	5	145664188	145664188	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:145664188G>A	uc003lnz.3	+	20	3158	c.2992G>A	c.(2992-2994)GCA>ACA	p.A998T		NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	998					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATTTTAGACCGCAAACCAAGG	0.363													41	63					0	0	1	0	0	
GPR151	134391	broad.mit.edu	37	5	145895470	145895470	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:145895470C>T	uc003lod.1	-	1	207	c.207G>A	c.(205-207)AAG>AAA	p.K69K		NM_194251	NP_919227	Q8TDV0	GP151_HUMAN	G protein-coupled receptor 151	69	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCATGGATGGCTTTCCTTTCC	0.537													22	35					0	0	1	0	0	
JAKMIP2	9832	broad.mit.edu	37	5	147016541	147016541	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:147016541G>T	uc003loq.1	-	11	1983	c.1601C>A	c.(1600-1602)GCT>GAT	p.A534D	JAKMIP2_uc011dbx.1_Missense_Mutation_p.A492D|JAKMIP2_uc003lor.1_Missense_Mutation_p.A534D|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.A534D	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	534	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTTTCTGAGCCAGAGTCGC	0.502													118	121					2.52883e-43	2.87002e-43	1	1	0	
PDGFRB	5159	broad.mit.edu	37	5	149506146	149506146	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:149506146G>T	uc003lro.2	-	11	2080	c.1611C>A	c.(1609-1611)GCC>GCA	p.A537A	PDGFRB_uc010jhd.2_Silent_p.A376A	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	537	Helical; (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGGCCAGGATGGCTGAGATCA	0.582			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								5	73					3.59834e-05	3.81628e-05	1	1	0	
TNIP1	10318	broad.mit.edu	37	5	150436498	150436498	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:150436498A>G	uc003ltf.2	-	6	1045	c.456T>C	c.(454-456)CGT>CGC	p.R152R	TNIP1_uc010jhl.2_RNA|TNIP1_uc010jhm.2_Silent_p.R152R|TNIP1_uc010jhn.2_Silent_p.R152R|TNIP1_uc011dco.1_Silent_p.R152R|TNIP1_uc003lth.2_RNA|TNIP1_uc003lti.2_Silent_p.R152R|TNIP1_uc003ltg.2_Silent_p.R99R|TNIP1_uc003ltj.2_Silent_p.R152R|TNIP1_uc010jho.1_RNA|TNIP1_uc010jhq.1_Silent_p.R99R|TNIP1_uc010jhp.1_Silent_p.R99R|TNIP1_uc010jhr.1_Silent_p.R152R|TNIP1_uc003ltk.2_Silent_p.R152R	NM_006058	NP_006049	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	152	Interacts with Nef.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCGTCCTCACGGGGCAGGG	0.677													14	40					0	0	1	0	0	
SLC36A1	206358	broad.mit.edu	37	5	150844683	150844683	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:150844683A>G	uc003luc.2	+	5	589	c.372A>G	c.(370-372)CTA>CTG	p.L124L	GM2A_uc011dcs.1_Intron|SLC36A1_uc003lub.1_Silent_p.L124L|SLC36A1_uc010jhw.1_Silent_p.L124L	NM_078483	NP_510968	Q7Z2H8	S36A1_HUMAN	solute carrier family 36 member 1	124	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|ion transport	endoplasmic reticulum|integral to membrane|lysosomal membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			skin(1)	1		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)|all_neural(839;0.138)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Glycine(DB00145)|L-Alanine(DB00160)	TGTATGGACTAGAATCCAGCC	0.507													9	102					0	0	1	0	0	
THG1L	54974	broad.mit.edu	37	5	157166483	157166483	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:157166483A>G	uc003lxd.2	+	6	1016	c.890A>G	c.(889-891)GAC>GGC	p.D297G	THG1L_uc011ddu.1_Missense_Mutation_p.D165G	NM_017872	NP_060342	Q9NWX6	THG1_HUMAN	interphase cytoplasmic foci protein 45	297					protein homotetramerization|tRNA modification	mitochondrion	GTP binding|metal ion binding|tRNA guanylyltransferase activity				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTAGATGAAGACAGCTGACCC	0.547													45	86					0	0	1	0	0	
SLIT3	6586	broad.mit.edu	37	5	168244441	168244441	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:168244441G>T	uc003mab.2	-	8	1077	c.657C>A	c.(655-657)TGC>TGA	p.C219*	SLIT3_uc010jjg.2_Nonsense_Mutation_p.C219*|SLIT3_uc010jji.2_Nonsense_Mutation_p.C219*|SLIT3_uc003mac.1_Nonsense_Mutation_p.C16*	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	219	LRRCT 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGTGGCAGTCGCAGTACAGGT	0.612													7	54					0.00448238	0.00463918	1	1	0	
FOXI1	2299	broad.mit.edu	37	5	169533358	169533358	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:169533358G>A	uc003mai.3	+	1	442	c.397G>A	c.(397-399)GCC>ACC	p.A133T	FOXI1_uc003maj.3_Missense_Mutation_p.A133T	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	133	Fork-head.				epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGCTCTCATCGCCATGGCCAT	0.642									Pendred_syndrome				3	15					0	0	1	0	0	
STK10	6793	broad.mit.edu	37	5	171488177	171488177	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:171488177G>A	uc003mbo.1	-	14	2478	c.2178C>T	c.(2176-2178)CGC>CGT	p.R726R		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	726	Potential.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGAGGCACTCGCGCTCCTTGT	0.612													8	240					0	0	1	0	0	
KIAA1191	57179	broad.mit.edu	37	5	175777642	175777642	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:175777642A>C	uc003mdw.2	-	6	805	c.433T>G	c.(433-435)TAC>GAC	p.Y145D	KIAA1191_uc003mdx.2_Missense_Mutation_p.Y126D|KIAA1191_uc003mdy.2_Missense_Mutation_p.Y145D|KIAA1191_uc003mea.2_Intron|KIAA1191_uc003mdz.2_Intron	NM_020444	NP_065177	Q96A73	K1191_HUMAN	hypothetical protein LOC57179 isoform a	145							protein binding			ovary(1)	1	all_cancers(89;0.00575)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.101)		ACTCGAAGGTACTTGGTCTCC	0.502													11	108					0	0	1	0	0	
PFN3	345456	broad.mit.edu	37	5	176827261	176827261	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:176827261G>A	uc003mgl.2	-	1	377	c.317C>T	c.(316-318)GCG>GTG	p.A106V		NM_001029886	NP_001025057	P60673	PROF3_HUMAN	profilin 3	106					actin cytoskeleton organization	actin cytoskeleton|cytoplasm	actin binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACCAGGAGCGCGCGCGGCGC	0.716													7	19					0	0	1	0	0	
FLT4	2324	broad.mit.edu	37	5	180039544	180039544	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr5:180039544C>A	uc003mma.3	-	26	3578	c.3499G>T	c.(3499-3501)GAG>TAG	p.E1167*	FLT4_uc003mlz.3_Nonsense_Mutation_p.E1167*	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1167	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CCCAGGATCTCCACCAGCTCC	0.657									Congenital_Hereditary_Lymphedema				16	124					6.72482e-11	7.47396e-11	1	1	0	
GCM2	9247	broad.mit.edu	37	6	10874777	10874777	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:10874777A>G	uc003mzn.3	-	5	1044	c.972T>C	c.(970-972)TTT>TTC	p.F324F	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	324					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TGGTGAAATCAAAGCTTCTCT	0.458													34	144					0	0	1	0	0	
NEDD9	4739	broad.mit.edu	37	6	11191400	11191400	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:11191400T>C	uc003mzv.2	-	5	869	c.702A>G	c.(700-702)GCA>GCG	p.A234A	NEDD9_uc010joz.2_Silent_p.A234A|NEDD9_uc003mzw.3_Silent_p.A88A	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	234					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			CCCTAAGCCCTGCTTCATCCC	0.527													8	77					0	0	1	0	0	
NEDD9	4739	broad.mit.edu	37	6	11213531	11213531	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:11213531G>A	uc003mzv.2	-	2	609	c.442C>T	c.(442-444)CCC>TCC	p.P148S	NEDD9_uc010joz.2_Missense_Mutation_p.P148S|NEDD9_uc003mzw.3_5'UTR|NEDD9_uc003mzx.2_Missense_Mutation_p.P148S	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	148	Interacts strongly with spindle- regulatory protein D1M1.				actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			CCCACGTGGGGCCCACTGGTT	0.448													5	58					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12122666	12122666	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:12122666G>A	uc003nac.2	+	4	2817	c.2638G>A	c.(2638-2640)GTA>ATA	p.V880I	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	880					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				TGATGTCTTTGTATCGGGACC	0.443													15	141					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12164142	12164142	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:12164142C>T	uc003nac.2	+	9	7784	c.7605C>T	c.(7603-7605)CCC>CCT	p.P2535P	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2535					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AAAGCAGCCCCGCCCCTCAGG	0.537													14	87					0	0	1	0	0	
HIVEP1	3096	broad.mit.edu	37	6	12164656	12164656	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:12164656A>G	uc003nac.2	+	9	8298	c.8119A>G	c.(8119-8121)AGC>GGC	p.S2707G	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2707					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				CGACGTGAGCAGCGATGATGA	0.478													8	71					0	0	1	0	0	
NUP153	9972	broad.mit.edu	37	6	17665556	17665556	+	Missense_Mutation	SNP	T	C	C	rs112957894		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:17665556T>C	uc003ncd.1	-	9	1329	c.1129A>G	c.(1129-1131)ACA>GCA	p.T377A	NUP153_uc011dje.1_Missense_Mutation_p.T377A|NUP153_uc010jpl.1_Missense_Mutation_p.T377A	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	377					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			CTTCGATTTGTTGCTATGGAA	0.348													6	104					0	0	1	0	0	
KIF13A	63971	broad.mit.edu	37	6	17800233	17800233	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:17800233C>T	uc003ncg.3	-	21	2671	c.2566G>A	c.(2566-2568)GTA>ATA	p.V856I	KIF13A_uc003ncf.2_Missense_Mutation_p.V856I|KIF13A_uc003nch.3_Missense_Mutation_p.V856I|KIF13A_uc003nci.3_Missense_Mutation_p.V856I	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	856					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			CTGCTGTCTACGACTTCAAGG	0.498													8	226					0	0	1	0	0	
MBOAT1	154141	broad.mit.edu	37	6	20212446	20212446	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:20212446G>A	uc003ncx.1	-	1	225	c.20C>T	c.(19-21)CCG>CTG	p.P7L	MBOAT1_uc011dji.1_5'UTR	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	7					phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			AAGGCTGGACGGCTGCGGCTC	0.706													3	30					0	0	1	0	0	
SCGN	10590	broad.mit.edu	37	6	25689706	25689706	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:25689706T>C	uc003nfb.2	+	9	782	c.579T>C	c.(577-579)TGT>TGC	p.C193C	SCGN_uc010jpz.2_Silent_p.C84C	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	193						extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CACAGGCTTGTTCTACTGAAG	0.393													11	131					0	0	1	0	0	
BTN3A1	11119	broad.mit.edu	37	6	26411795	26411795	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:26411795C>T	uc003nhv.2	+	9	1372	c.1004C>T	c.(1003-1005)GCC>GTC	p.A335V	BTN3A1_uc011dkj.1_Missense_Mutation_p.A335V|BTN3A1_uc011dkk.1_Missense_Mutation_p.A283V|BTN3A1_uc010jqj.2_Missense_Mutation_p.A335V	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	335	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						TGGAAAAAGGCCCTCTTCAAG	0.433													17	89					0	0	1	0	0	
HIST1H2BJ	8970	broad.mit.edu	37	6	27100511	27100511	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:27100511A>T	uc003niv.2	-	1	65	c.19T>A	c.(19-21)TCT>ACT	p.S7T	HIST1H2BJ_uc003niu.1_RNA|HIST1H2AG_uc003niw.2_5'Flank	NM_021058	NP_066402	P06899	H2B1J_HUMAN	histone cluster 1, H2bj	7					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCGGGAGCAGACTTCGCTGGC	0.532													9	115					0	0	1	0	0	
ZNF184	7738	broad.mit.edu	37	6	27420527	27420527	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:27420527T>A	uc003njj.2	-	5	1622	c.811A>T	c.(811-813)ATT>TTT	p.I271F	ZNF184_uc010jqv.2_Missense_Mutation_p.I271F|ZNF184_uc003nji.2_Missense_Mutation_p.I271F	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	271	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CCAGTATGAATTCTTTGATGG	0.368													17	106					0	0	1	0	0	
NKAPL	222698	broad.mit.edu	37	6	28227462	28227462	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:28227462C>T	uc003nkt.2	+	1	365	c.313C>T	c.(313-315)CGG>TGG	p.R105W	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	105										upper_aerodigestive_tract(1)|ovary(1)	2						TGCAGAAGAACGGCAGTCAGC	0.582													18	93					0	0	1	0	0	
OR2H1	26716	broad.mit.edu	37	6	29430469	29430469	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:29430469A>G	uc003nmi.2	+	3	1366	c.923A>G	c.(922-924)GAC>GGC	p.D308G	OR2H1_uc003nmj.1_Missense_Mutation_p.D308G|OR2H1_uc010jri.1_Missense_Mutation_p.D230G	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGAAAGAGACTCCAGGGAA	0.433													4	65					0	0	1	0	0	
LY6G5C	80741	broad.mit.edu	37	6	31644790	31644790	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:31644790A>G	uc003nvu.1	-	3	388	c.388T>C	c.(388-390)TAC>CAC	p.Y130H	LY6G5C_uc003nvw.1_RNA|LY6G5C_uc010jtb.1_RNA	NM_025262	NP_079538	Q5SRR4	LY65C_HUMAN	lymphocyte antigen 6 complex G5C	133	UPAR/Ly6.					extracellular region					0						AGGAAGCAGTATTGAGAGAAT	0.458													13	139					0	0	1	0	0	
VARS	7407	broad.mit.edu	37	6	31749699	31749699	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:31749699G>A	uc003nxe.2	-	19	2695	c.2272C>T	c.(2272-2274)CGC>TGC	p.R758C	VARS_uc003nxf.1_5'Flank|VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	758					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GCCTCATTGCGTCCACTCACC	0.637													14	223					0	0	1	0	0	
TNXB	7148	broad.mit.edu	37	6	32046817	32046817	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:32046817G>A	uc003nzl.2	-	11	4570	c.4368C>T	c.(4366-4368)GGC>GGT	p.G1456G		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1543					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CACCTGTCACGCCCACGGCGG	0.662													7	42					0	0	1	0	0	
GPSM3	63940	broad.mit.edu	37	6	32159673	32159673	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:32159673C>T	uc003oay.3	-	3	551	c.158G>A	c.(157-159)CGC>CAC	p.R53H	PBX2_uc003oav.1_5'Flank|PBX2_uc003oaw.2_5'Flank|GPSM3_uc003oax.3_Intron|GPSM3_uc003oaz.2_Missense_Mutation_p.R53H	NM_022107	NP_071390	Q9Y4H4	GPSM3_HUMAN	G-protein signaling modulator 3 (AGS3-like, C.	53					signal transduction	cytoplasm	GTPase activator activity|protein binding				0						GGAGGCCGAGCGGGGTCCCAG	0.662													6	47					0	0	1	0	0	
HLA-DRA	3122	broad.mit.edu	37	6	32410459	32410459	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:32410459C>T	uc003obh.2	+	2	398	c.317C>T	c.(316-318)CCG>CTG	p.P106L	HLA-DRA_uc003obi.2_Missense_Mutation_p.P106L	NM_019111	NP_061984	P01903	DRA_HUMAN	major histocompatibility complex, class II, DR	106	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to plasma membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			ovary(1)|skin(1)	2						AACTATACTCCGATCACCAAT	0.463									T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Kaposi_Sarcoma_Familial_Clustering_of				20	162					0	0	1	0	0	
DAXX	1616	broad.mit.edu	37	6	33289197	33289197	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:33289197G>A	uc003oec.2	-	3	559	c.355C>T	c.(355-357)CGG>TGG	p.R119W	DAXX_uc011drd.1_Missense_Mutation_p.R44W|DAXX_uc011dre.1_Missense_Mutation_p.R131W|DAXX_uc003oed.2_Missense_Mutation_p.R119W|DAXX_uc010juw.2_Missense_Mutation_p.R44W	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	119	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						TTGGCTGGCCGGCTCCGGGCC	0.582			Mis|F|N		Pancreatic neuroendocrine tumors								9	127					0	0	1	0	0	
GRM4	2914	broad.mit.edu	37	6	34004301	34004301	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:34004301C>T	uc003oir.3	-	8	1756	c.1586G>A	c.(1585-1587)CGG>CAG	p.R529Q	GRM4_uc011dsn.1_Missense_Mutation_p.R482Q|GRM4_uc010jvh.2_Missense_Mutation_p.R529Q|GRM4_uc010jvi.2_Missense_Mutation_p.R221Q|GRM4_uc003oio.2_Missense_Mutation_p.R221Q|GRM4_uc003oip.2_RNA|GRM4_uc011dsl.1_Missense_Mutation_p.R389Q|GRM4_uc003oiq.2_Missense_Mutation_p.R396Q|GRM4_uc011dsm.1_Missense_Mutation_p.R360Q	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	529	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	TGTCTTCTTCCGCTCACCCGG	0.622													24	58					0	0	1	0	0	
UHRF1BP1	54887	broad.mit.edu	37	6	34826293	34826293	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:34826293C>A	uc003oju.3	+	14	2394	c.2160C>A	c.(2158-2160)GCC>GCA	p.A720A	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	720										ovary(3)	3						ATTTTGTAGCCCCCTTCCCCC	0.547													4	75					0.0215528	0.0218585	1	1	0	
ANKS1A	23294	broad.mit.edu	37	6	35048916	35048916	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:35048916C>T	uc003ojx.3	+	17	2832	c.2690C>T	c.(2689-2691)GCG>GTG	p.A897V	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.A437V|ANKS1A_uc010jvp.1_Missense_Mutation_p.A271V	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	897						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						CCCTCCCGAGCGGAGCGCTTC	0.667													7	43					0	0	1	0	0	
LHFPL5	222662	broad.mit.edu	37	6	35782436	35782436	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:35782436C>T	uc003olg.1	+	2	903	c.526C>T	c.(526-528)CGC>TGC	p.R176C		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	176			R -> L (in DFNB67).			integral to membrane				skin(1)	1						CTGCACCATCCGCTGGGCCTT	0.627													10	67					0	0	1	0	0	
DNAH8	1769	broad.mit.edu	37	6	38998037	38998037	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:38998037T>C	uc003ooe.1	+	91	13942	c.13342T>C	c.(13342-13344)TAT>CAT	p.Y4448H		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCCCAAGCTGTATGTGTGTCC	0.502													15	100					0	0	1	0	0	
KLHDC3	116138	broad.mit.edu	37	6	42986861	42986861	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:42986861T>G	uc003otl.2	+	9	1130	c.961T>G	c.(961-963)TTT>GTT	p.F321V	C6orf153_uc003otp.1_5'Flank|KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Missense_Mutation_p.F297V|KLHDC3_uc003otn.2_Missense_Mutation_p.F205V|KLHDC3_uc003oto.2_Missense_Mutation_p.F262V	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	321					reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			GGGAGATGAATTTGACCTTAT	0.433													5	113					0	0	1	0	0	
CUL7	9820	broad.mit.edu	37	6	43020479	43020479	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:43020479G>A	uc003otq.2	-	2	351	c.48C>T	c.(46-48)CCC>CCT	p.P16P	CUL7_uc011dvb.1_Silent_p.P68P|CUL7_uc010jyh.2_5'UTR|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	16					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CATGTAAGCCGGGCCCCAGGG	0.597													5	55					0	0	1	0	0	
PTK7	5754	broad.mit.edu	37	6	43098289	43098289	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:43098289G>A	uc003oub.1	+	5	900	c.702G>A	c.(700-702)GTG>GTA	p.V234V	PTK7_uc003ouc.1_Silent_p.V234V|PTK7_uc003oud.1_Silent_p.V234V|PTK7_uc003oue.1_Silent_p.V234V|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Silent_p.V242V|PTK7_uc010jyj.1_5'Flank|PTK7_uc003oua.2_Silent_p.V234V	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	234	Ig-like C2-type 3.|Extracellular (Potential).				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.V234M(1)		ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			CCCAGGACGTGGTAGTAGCGA	0.602													5	30					0	0	1	0	0	
MEP1A	4224	broad.mit.edu	37	6	46777201	46777201	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:46777201C>T	uc010jzh.1	+	6	349	c.307C>T	c.(307-309)CGT>TGT	p.R103C	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.R131C|MEP1A_uc011dwi.1_Missense_Mutation_p.R3C	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	103	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			TGAGATGTTCCGTCTCAAGTC	0.378													70	104					0	0	1	0	0	
GPR111	222611	broad.mit.edu	37	6	47649925	47649925	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:47649925C>A	uc010jzj.1	+	6	1631	c.1630C>A	c.(1630-1632)CTC>ATC	p.L544I	GPR111_uc010jzk.1_Missense_Mutation_p.L476I|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	544	Helical; Name=3; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						ACTCCTTATCCTCTATGGAAT	0.453													7	65					2.74318e-10	3.03697e-10	1	1	0	
PAQR8	85315	broad.mit.edu	37	6	52268177	52268177	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:52268177C>T	uc003pao.3	+	2	340	c.166C>T	c.(166-168)CGC>TGC	p.R56C		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	56	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					CACCGGCTACCGCCCCACGGG	0.602													11	121					0	0	1	0	0	
EFHC1	114327	broad.mit.edu	37	6	52343854	52343854	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:52343854A>G	uc003pap.3	+	8	1513	c.1298A>G	c.(1297-1299)GAC>GGC	p.D433G	EFHC1_uc011dwv.1_Missense_Mutation_p.D342G|EFHC1_uc011dww.1_Missense_Mutation_p.D414G	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	433	DM10 3.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					ATCCCAGAAGACAAAGACCGC	0.393													15	84					0	0	1	0	0	
FBXO9	26268	broad.mit.edu	37	6	52957292	52957292	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:52957292C>T	uc003pbo.2	+	8	800	c.749C>T	c.(748-750)CCG>CTG	p.P250L	FBXO9_uc003pbk.2_Missense_Mutation_p.P206L|FBXO9_uc003pbl.2_Missense_Mutation_p.P240L|FBXO9_uc003pbm.2_Missense_Mutation_p.P130L|FBXO9_uc003pbn.2_Missense_Mutation_p.P130L	NM_012347	NP_036479	Q9UK97	FBX9_HUMAN	F-box only protein 9 isoform 1	250						ubiquitin ligase complex	ubiquitin-protein ligase activity			pancreas(1)	1	Lung NSC(77;0.103)					AAACTTGTTCCGTACACGTCC	0.418													49	75					0	0	1	0	0	
PHF3	23469	broad.mit.edu	37	6	64404538	64404538	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:64404538C>T	uc003pep.1	+	5	2590	c.2564C>T	c.(2563-2565)CCT>CTT	p.P855L	PHF3_uc010kaf.1_Missense_Mutation_p.P855L|PHF3_uc003pem.2_Missense_Mutation_p.P808L|PHF3_uc010kag.1_Missense_Mutation_p.P767L|PHF3_uc010kah.1_Missense_Mutation_p.P669L|PHF3_uc003pen.2_Missense_Mutation_p.P767L|PHF3_uc011dxs.1_Missense_Mutation_p.P124L	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	855					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			CAGCTAGCTCCTCTTCGTAAG	0.378													17	146					0	0	1	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83848666	83848666	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:83848666A>G	uc003pjs.1	+	21	5165	c.4905A>G	c.(4903-4905)ACA>ACG	p.T1635T	DOPEY1_uc011dyy.1_Silent_p.T1626T|DOPEY1_uc010kbl.1_Silent_p.T1626T|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1635					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		AGCCAATCACATGTCAAGGCA	0.428													7	79					0	0	1	0	0	
DOPEY1	23033	broad.mit.edu	37	6	83848693	83848693	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:83848693G>A	uc003pjs.1	+	21	5192	c.4932G>A	c.(4930-4932)GTG>GTA	p.V1644V	DOPEY1_uc011dyy.1_Silent_p.V1635V|DOPEY1_uc010kbl.1_Silent_p.V1635V|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1644					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TCTGTGCAGTGATACGAGCTT	0.448													12	82					0	0	1	0	0	
C6orf165	154313	broad.mit.edu	37	6	88125515	88125515	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:88125515G>A	uc003plv.2	+	5	487	c.395G>A	c.(394-396)CGG>CAG	p.R132Q	C6orf165_uc003plw.2_5'UTR|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Missense_Mutation_p.R132Q	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	132										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGCCTCTACCGGAAGATTATC	0.438													7	51					0	0	1	0	0	
SIM1	6492	broad.mit.edu	37	6	100838312	100838312	+	Silent	SNP	A	C	C	rs139754745	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:100838312A>C	uc003pqj.3	-	11	2433	c.2226T>G	c.(2224-2226)ACT>ACG	p.T742T	SIM1_uc010kcu.2_Silent_p.T742T	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	742	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TCAGATGGGAAGTTACATCAA	0.413													27	112					0	0	1	0	0	
C6orf170	221322	broad.mit.edu	37	6	121452898	121452898	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:121452898T>A	uc003pyo.1	-	25	2842	c.2774A>T	c.(2773-2775)GAC>GTC	p.D925V	C6orf170_uc003pyq.1_RNA|C6orf170_uc010kej.1_Missense_Mutation_p.D24V|C6orf170_uc003pyp.1_Missense_Mutation_p.D485V	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	925					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		AAGATCATTGTCTAATCAGAA	0.274													4	9					0	0	1	0	0	
SERINC1	57515	broad.mit.edu	37	6	122768310	122768310	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:122768310T>C	uc003pyy.1	-	8	1021	c.951A>G	c.(949-951)GGA>GGG	p.G317G	SERINC1_uc003pyx.1_5'Flank	NM_020755	NP_065806	Q9NRX5	SERC1_HUMAN	serine incorporator 1	317	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	L-serine transmembrane transporter activity|protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.126)		GTCCTATAATTCCTTGAGCAT	0.358													21	118					0	0	1	0	0	
NCOA7	135112	broad.mit.edu	37	6	126199499	126199499	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:126199499A>G	uc010kes.2	+	7	891	c.442A>G	c.(442-444)ACT>GCT	p.T148A	NCOA7_uc003qae.3_Missense_Mutation_p.T148A|NCOA7_uc003qah.2_Missense_Mutation_p.T148A|NCOA7_uc003qai.2_Missense_Mutation_p.T148A|NCOA7_uc010ket.2_Missense_Mutation_p.T44A|NCOA7_uc003qaf.2_Missense_Mutation_p.T148A|NCOA7_uc003qag.2_Missense_Mutation_p.T148A	NM_181782	NP_861447	Q8NI08	NCOA7_HUMAN	nuclear receptor coactivator 7 isoform 1	148	LysM.				cell wall macromolecule catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (4;0.0803)|GBM - Glioblastoma multiforme(226;0.0193)|all cancers(137;0.237)		TTTCACACATACTATTGTTCC	0.358													6	33					0	0	1	0	0	
HBS1L	10767	broad.mit.edu	37	6	135360709	135360709	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:135360709A>G	uc003qez.2	-	4	637	c.430_splice	c.e4+1	p.G144_splice	HBS1L_uc011ecy.1_Intron|HBS1L_uc011ecz.1_Intron|HBS1L_uc011eda.1_Splice_Site_p.G102_splice|HBS1L_uc003qfa.2_Splice_Site_p.G144_splice	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein						signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		GTAAAGGCATACCTTTTGCTA	0.373													11	116					0	0	1	0	0	
MIR548A2	693126	broad.mit.edu	37	6	135560314	135560314	+	RNA	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:135560314T>A	hsa-mir-548a-2|MI0003598	+			c.17T>A																				0						gtgtattaggtttgtgcaaaa	0.1													6	52					0	0	1	0	0	
HIVEP2	3097	broad.mit.edu	37	6	143091156	143091156	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:143091156T>C	uc003qjd.2	-	5	5463	c.4720A>G	c.(4720-4722)ACG>GCG	p.T1574A		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1574	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TCCGATGCCGTCTCATCGATA	0.537													16	111					0	0	1	0	0	
UTRN	7402	broad.mit.edu	37	6	145115062	145115062	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:145115062C>A	uc003qkt.2	+	62	9105	c.9013C>A	c.(9013-9015)CTA>ATA	p.L3005I		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3005	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CCCCCGGCAGCTAGGTGAAGT	0.502													9	69					0.000673444	0.000702938	1	1	0	
ZC3H12D	340152	broad.mit.edu	37	6	149777879	149777879	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:149777879C>A	uc003qmn.1	-	3	673	c.603G>T	c.(601-603)CGG>CGT	p.R201R	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Silent_p.R201R|ZC3H12D_uc010kid.2_Silent_p.R201R	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	201						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TCTGCAGGTCCCGGTAGTTGT	0.617													12	69					0.00244969	0.00254768	1	1	0	
SYNE1	23345	broad.mit.edu	37	6	152686081	152686081	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:152686081T>G	uc010kiw.2	-	63	10648	c.10046A>C	c.(10045-10047)CAG>CCG	p.Q3349P	SYNE1_uc003qot.3_Missense_Mutation_p.Q3356P|SYNE1_uc003qou.3_Missense_Mutation_p.Q3349P|SYNE1_uc010kja.1_Missense_Mutation_p.Q54P	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3349	Spectrin 7.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGAAGTATTCTGAAGGACAGA	0.433										HNSCC(10;0.0054)			13	58					0	0	1	0	0	
UNC93A	54346	broad.mit.edu	37	6	167719508	167719508	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:167719508T>C	uc003qvq.2	+	6	1121	c.946T>C	c.(946-948)TAC>CAC	p.Y316H	UNC93A_uc003qvr.2_Missense_Mutation_p.Y274H	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	316						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GGTCTCGCAGTACACGGGCAG	0.577													4	94					0	0	1	0	0	
MLLT4	4301	broad.mit.edu	37	6	168325765	168325765	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr6:168325765A>G	uc003qwd.2	+	22	3211	c.3069A>G	c.(3067-3069)GCA>GCG	p.A1023A	MLLT4_uc003qwb.1_Silent_p.A1008A|MLLT4_uc003qwc.1_Silent_p.A1024A|MLLT4_uc003qwg.1_Silent_p.A333A	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1024	PDZ.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GCATTGTTGCAGCAAAGGTAG	0.458			T	MLL	AL								6	50					0	0	1	0	0	
GET4	51608	broad.mit.edu	37	7	935043	935043	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:935043C>A	uc003sjl.1	+	9	1060	c.968C>A	c.(967-969)CCC>CAC	p.P323H	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	323					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						GACGGCAGCCCCATCGAGCTG	0.642													5	84					1.6384e-10	1.81621e-10	1	1	0	
EIF3B	8662	broad.mit.edu	37	7	2412376	2412376	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:2412376C>T	uc003slx.2	+	12	1839	c.1756C>T	c.(1756-1758)CGG>TGG	p.R586W	EIF3B_uc003sly.2_Missense_Mutation_p.R586W|EIF3B_uc003sma.2_Missense_Mutation_p.R314W	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	586	WD 4.				regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		AGAGGCTCCGCGGATATCTGT	0.463													10	71					0	0	1	0	0	
SDK1	221935	broad.mit.edu	37	7	4213929	4213929	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:4213929G>A	uc003smx.2	+	33	5015	c.4876G>A	c.(4876-4878)GGG>AGG	p.G1626R	SDK1_uc010kso.2_Missense_Mutation_p.G902R|SDK1_uc003smy.2_Missense_Mutation_p.G113R	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1626	Fibronectin type-III 10.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GTATGAAGCCGGGTCAGGCAC	0.547													10	254					0	0	1	0	0	
RBAK	57786	broad.mit.edu	37	7	5105149	5105149	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:5105149T>A	uc010kss.1	+	6	2386	c.2062T>A	c.(2062-2064)TTC>ATC	p.F688I	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Missense_Mutation_p.F688I	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	688	Interaction with AR.|C2H2-type 16.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		TGGGAAAAAATTCCACCACAG	0.383													14	117					0	0	1	0	0	
TNRC18	84629	broad.mit.edu	37	7	5355614	5355614	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:5355614G>T	uc003soi.3	-	25	7184	c.6835C>A	c.(6835-6837)CTC>ATC	p.L2279I		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	2279							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GGGGGCAGGAGGCGGATATGT	0.612													4	40					0.150653	0.151893	1	1	0	
ACTB	60	broad.mit.edu	37	7	5567657	5567657	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:5567657G>A	uc003sos.3	-	4	998	c.962C>T	c.(961-963)GCA>GTA	p.A321V	ACTB_uc003sor.3_Missense_Mutation_p.A199V|ACTB_uc003sot.3_Missense_Mutation_p.A321V|ACTB_uc003soq.3_Missense_Mutation_p.A199V|ACTB_uc010ksy.2_Missense_Mutation_p.A199V	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	321					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		TGTGCTGGGTGCCAGGGCAGT	0.597													12	123					0	0	1	0	0	
AHR	196	broad.mit.edu	37	7	17373617	17373617	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:17373617T>C	uc011jxz.1	+	7	1400	c.787T>C	c.(787-789)TTG>CTG	p.L263L	AHR_uc003stt.3_RNA	NM_001621	NP_001612	P35869	AHR_HUMAN	aryl hydrocarbon receptor precursor	263					apoptosis|blood vessel development|cell cycle|regulation of B cell proliferation|response to stress|transcription from RNA polymerase II promoter|xenobiotic metabolic process	cytosolic aryl hydrocarbon receptor complex|transcription factor complex	Hsp90 protein binding|ligand-dependent nuclear receptor activity|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			urinary_tract(1)|kidney(1)|pancreas(1)	3	Lung NSC(10;0.0392)|all_lung(11;0.0754)					TCCACCTCAGTTGGCTTTGTT	0.378													12	90					0	0	1	0	0	
CREB5	9586	broad.mit.edu	37	7	28858731	28858731	+	Splice_Site	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:28858731A>G	uc003szq.2	+	11	1754	c.1364_splice	c.e11-2	p.S455_splice	CREB5_uc003szo.2_Splice_Site_p.S422_splice|CREB5_uc003szr.2_Splice_Site_p.S448_splice|CREB5_uc003szs.2_Splice_Site_p.S316_splice	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5						positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						TTTTCTCCCTAGGTCCAGAGA	0.458													10	156					0	0	1	0	0	
BMPER	168667	broad.mit.edu	37	7	34094781	34094781	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:34094781A>G	uc011kap.1	+	9	907	c.793A>G	c.(793-795)ACT>GCT	p.T265A		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	265	VWFC 4.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CCAGGACTCTACTGTGGTTTG	0.498													5	131					0	0	1	0	0	
POU6F2	11281	broad.mit.edu	37	7	39247128	39247128	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:39247128A>G	uc003thb.1	+	4	462	c.420A>G	c.(418-420)ACA>ACG	p.T140T	POU6F2_uc010kxo.2_Silent_p.T132T	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	140					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TGGTTCTCACACTGCCAACAG	0.582													15	118					0	0	1	0	0	
POU6F2	11281	broad.mit.edu	37	7	39472723	39472723	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:39472723A>C	uc003thb.1	+	7	1116	c.1074A>C	c.(1072-1074)CAA>CAC	p.Q358H		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	358	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CATCGAGCCAAGCAGCAAGCG	0.587													11	76					0	0	1	0	0	
Unknown	0	broad.mit.edu	37	7	39874030	39874030	+	Missense_Mutation	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:39874030C>G	uc010kxp.2	+	2	1138	c.781C>G	c.(781-783)CAA>GAA	p.Q261E						SubName: Full=Similar to sequence-specific single-stranded-DNA-binding protein;																		GCAGATTCAACAAATTCCAGT	0.587													5	59					0	0	1	0	0	
CDK13	8621	broad.mit.edu	37	7	39991418	39991418	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:39991418G>A	uc003thh.3	+	1	1460	c.1178G>A	c.(1177-1179)CGC>CAC	p.R393H	CDK13_uc003thi.3_Missense_Mutation_p.R393H	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	393					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						AGCAGCTGGCGCCGCTCTCGC	0.672													7	78					0	0	1	0	0	
CDK13	8621	broad.mit.edu	37	7	40027229	40027229	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:40027229T>C	uc003thh.3	+	2	1525	c.1243T>C	c.(1243-1245)TAT>CAT	p.Y415H	CDK13_uc003thi.3_Missense_Mutation_p.Y415H|CDK13_uc011kbf.1_5'UTR	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	415					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						CAGAAGCCCGTATTCATCTAG	0.403													9	75					0	0	1	0	0	
DBNL	28988	broad.mit.edu	37	7	44091531	44091531	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:44091531T>C	uc003tjp.3	+	3	340	c.242T>C	c.(241-243)CTC>CCC	p.L81P	DBNL_uc003tjn.2_Intron|DBNL_uc003tjo.3_Missense_Mutation_p.L81P|DBNL_uc003tjr.3_Intron|DBNL_uc003tjq.3_Missense_Mutation_p.L81P|DBNL_uc011kbm.1_Missense_Mutation_p.L81P|DBNL_uc011kbn.1_Intron|DBNL_uc011kbo.1_Intron|DBNL_uc011kbp.1_Missense_Mutation_p.L81P|DBNL_uc011kbq.1_Intron|DBNL_uc011kbr.1_Missense_Mutation_p.L29P|DBNL_uc011kbs.1_5'Flank	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	81	ADF-H.				activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						AAATTTGTCCTCATCAACTGG	0.507													11	59					0	0	1	0	0	
GUSB	2990	broad.mit.edu	37	7	65441103	65441103	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:65441103C>A	uc003tun.2	-	5	887	c.811G>T	c.(811-813)GCG>TCG	p.A271S	GUSB_uc011kdt.1_Intron|GUSB_uc010kzw.1_Missense_Mutation_p.A104S	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	271					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						GTCCCATTCGCCACGACTTTG	0.522													4	92					0.184627	0.184627	1	1	0	
PCLO	27445	broad.mit.edu	37	7	82389956	82389956	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:82389956T>C	uc003uhx.2	-	24	15576	c.15287A>G	c.(15286-15288)CAG>CGG	p.Q5096R		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	5019	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGAGCTACCTGAAGAGAATG	0.313													6	65					0	0	1	0	0	
PCLO	27445	broad.mit.edu	37	7	82578809	82578809	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:82578809A>G	uc003uhx.2	-	6	11384	c.11095T>C	c.(11095-11097)TAT>CAT	p.Y3699H	PCLO_uc003uhv.2_Missense_Mutation_p.Y3699H|PCLO_uc010lec.2_Missense_Mutation_p.Y664H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCCTCGGTATACTGAAAAGGA	0.473													21	192					0	0	1	0	0	
SAMD9	54809	broad.mit.edu	37	7	92732286	92732286	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:92732286T>C	uc003umf.2	-	3	3381	c.3125A>G	c.(3124-3126)GAA>GGA	p.E1042G	SAMD9_uc003umg.2_Missense_Mutation_p.E1042G	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1042						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ACCTTCATGTTCATCGCGGTG	0.368													12	46					0	0	1	0	0	
SAMD9L	219285	broad.mit.edu	37	7	92764562	92764562	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:92764562G>A	uc003umh.1	-	5	1939	c.723C>T	c.(721-723)GTC>GTT	p.V241V	SAMD9L_uc003umj.1_Silent_p.V241V|SAMD9L_uc003umi.1_Silent_p.V241V|SAMD9L_uc010lfb.1_Silent_p.V241V|SAMD9L_uc003umk.1_Silent_p.V241V|SAMD9L_uc010lfc.1_Silent_p.V241V|SAMD9L_uc010lfd.1_Silent_p.V241V|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	241										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GTTTGTCCTTGACTCCAAAAT	0.403													13	76					0	0	1	0	0	
CCDC132	55610	broad.mit.edu	37	7	92970845	92970845	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:92970845C>T	uc003umo.2	+	23	2293	c.2165C>T	c.(2164-2166)ACG>ATG	p.T722M	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.T692M|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.T442M	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	722											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TCTGGGGATACGCTGTATGGG	0.438													12	56					0	0	1	0	0	
CALCR	799	broad.mit.edu	37	7	93072923	93072923	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:93072923C>A	uc003umv.1	-	10	1158	c.897G>T	c.(895-897)TTG>TTT	p.L299F	CALCR_uc011kia.1_Missense_Mutation_p.L79F|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.L265F|CALCR_uc003umw.2_Missense_Mutation_p.L265F	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	281	Helical; Name=4; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TACCCCAGCCCAAGAGATAAT	0.438													4	61					0.184627	0.184627	1	1	0	
PPP1R9A	55607	broad.mit.edu	37	7	94791244	94791244	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:94791244T>G	uc003unp.2	+	5	1997	c.1715T>G	c.(1714-1716)TTT>TGT	p.F572C	PPP1R9A_uc010lfj.2_Missense_Mutation_p.F572C|PPP1R9A_uc011kif.1_Missense_Mutation_p.F572C|PPP1R9A_uc003unq.2_Missense_Mutation_p.F572C|PPP1R9A_uc011kig.1_Missense_Mutation_p.F572C	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	572	PDZ.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			ACACAGAATTTTGCAGCAACA	0.363										HNSCC(28;0.073)			6	37					0	0	1	0	0	
MBLAC1	255374	broad.mit.edu	37	7	99725164	99725164	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:99725164C>T	uc003utp.2	+	2	545	c.146C>T	c.(145-147)CCC>CTC	p.P49L		NM_203397	NP_981942	A4D2B0	MBLC1_HUMAN	metallo-beta-lactamase domain containing 1	49							hydrolase activity|metal ion binding			breast(1)	1						CTGGTCCTACCCCAGACCCGG	0.751													3	12					0	0	1	0	0	
GPC2	221914	broad.mit.edu	37	7	99771477	99771477	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:99771477A>G	uc003utv.2	-	5	1041	c.873T>C	c.(871-873)CCT>CCC	p.P291P	GPC2_uc010lgr.2_Intron|GPC2_uc003utw.1_3'UTR	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	291						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGCCCCAGTCAGGCTCCAGTC	0.453													17	294					0	0	1	0	0	
SPDYE6	729597	broad.mit.edu	37	7	101988938	101988938	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:101988938C>T	uc011kkp.1	-	6	1356	c.935G>A	c.(934-936)CGT>CAT	p.R312H	SPDYE6_uc003uzb.2_Missense_Mutation_p.R168H	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	312	Arg-rich.										0						CTGGAACCGACGCTTACGGAG	0.567													17	550					0	0	1	0	0	
DLD	1738	broad.mit.edu	37	7	107545454	107545454	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:107545454C>A	uc003vet.2	+	6	499	c.389C>A	c.(388-390)GCA>GAA	p.A130E	DLD_uc010ljm.1_RNA|DLD_uc011kmg.1_Missense_Mutation_p.A130E|DLD_uc011kmh.1_Missense_Mutation_p.A107E|DLD_uc011kmi.1_Missense_Mutation_p.A31E	NM_000108	NP_000099	P09622	DLDH_HUMAN	dihydrolipoamide dehydrogenase precursor	130					branched chain family amino acid catabolic process|cell redox homeostasis|lysine catabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle	mitochondrial matrix	dihydrolipoyl dehydrogenase activity			central_nervous_system(1)	1					NADH(DB00157)	AAGAGTACTGCAGTAAAAGCT	0.328													6	39					4.096e-09	4.49408e-09	1	1	0	
NRCAM	4897	broad.mit.edu	37	7	107832191	107832191	+	Missense_Mutation	SNP	C	T	T	rs139663718	by1000genomes	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:107832191C>T	uc003vfb.2	-	18	2356	c.1885G>A	c.(1885-1887)GCT>ACT	p.A629T	NRCAM_uc003vfc.2_Missense_Mutation_p.A623T|NRCAM_uc011kmk.1_Missense_Mutation_p.A624T|NRCAM_uc003vfd.2_Missense_Mutation_p.A605T|NRCAM_uc003vfe.2_Missense_Mutation_p.A605T	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	629	Ig-like 6.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						CTAAGCACAGCGCTGGCGGAG	0.433													7	47					0	0	1	0	0	
TMEM209	84928	broad.mit.edu	37	7	129832581	129832581	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:129832581T>C	uc003vpn.2	-	6	779	c.656A>G	c.(655-657)TAC>TGC	p.Y219C	TMEM209_uc010lmc.1_Missense_Mutation_p.Y219C	NM_032842	NP_116231	Q96SK2	TM209_HUMAN	transmembrane protein 209	219	Ser-rich.					integral to membrane				ovary(2)|large_intestine(1)	3	Melanoma(18;0.0435)					TGAAGAACGGTAGCGAGATCT	0.463													4	54					0	0	1	0	0	
EXOC4	60412	broad.mit.edu	37	7	133622681	133622681	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:133622681A>G	uc003vrk.2	+	14	2100	c.2065A>G	c.(2065-2067)AAC>GAC	p.N689D	EXOC4_uc011kpo.1_Missense_Mutation_p.N588D|EXOC4_uc003vrl.2_Missense_Mutation_p.N299D|EXOC4_uc011kpp.1_Missense_Mutation_p.N221D|EXOC4_uc011kpq.1_5'UTR	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	689					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TCTTATTGGGAACCTGGGTGA	0.463													21	139					0	0	1	0	0	
UBN2	254048	broad.mit.edu	37	7	138968847	138968847	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:138968847T>A	uc011kqr.1	+	15	3196	c.3196T>A	c.(3196-3198)TCA>ACA	p.S1066T		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	1066	Ser-rich.									ovary(1)|skin(1)	2						GCCCTCTCTGTCAGCTAAGCC	0.517													7	110					0	0	1	0	0	
ZNF398	57541	broad.mit.edu	37	7	148863337	148863337	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:148863337A>G	uc003wfl.2	+	3	783	c.508A>G	c.(508-510)AAT>GAT	p.N170D	ZNF398_uc011kul.1_5'UTR|ZNF398_uc011kum.1_Missense_Mutation_p.N175D	NM_170686	NP_733787	Q8TD17	ZN398_HUMAN	zinc finger 398 isoform a	170	KRAB.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00143)			ACTTTACAAGAATATCATGAA	0.433													6	66					0	0	1	0	0	
ACCN3	9311	broad.mit.edu	37	7	150746007	150746007	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:150746007G>A	uc003win.2	+	1	403	c.35G>A	c.(34-36)CGG>CAG	p.R12Q	ACCN3_uc003wio.2_Missense_Mutation_p.R12Q|ACCN3_uc003wip.2_Missense_Mutation_p.R12Q|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	12	Cytoplasmic (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGGCCCGGCGGCCAGCCTCG	0.677													10	65					0	0	1	0	0	
PTPRN2	5799	broad.mit.edu	37	7	157985105	157985105	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr7:157985105G>T	uc003wno.2	-	5	584	c.463C>A	c.(463-465)CTG>ATG	p.L155M	PTPRN2_uc003wnp.2_Missense_Mutation_p.L138M|PTPRN2_uc003wnq.2_Missense_Mutation_p.L155M|PTPRN2_uc003wnr.2_Missense_Mutation_p.L117M|PTPRN2_uc011kwa.1_Missense_Mutation_p.L178M	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	155	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		AGGAAGGGCAGGTGGCGTCGG	0.652													15	60					3.57192e-18	4.03251e-18	1	1	0	
MIR596	693181	broad.mit.edu	37	8	1765460	1765460	+	RNA	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:1765460C>T	hsa-mir-596|MI0003608	+			c.64C>T																				0						GCAGCTGCTGCCCTTCGGAGG	0.498													5	41					0	0	1	0	0	
MYOM2	9172	broad.mit.edu	37	8	2033439	2033439	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:2033439G>A	uc003wpx.3	+	14	1699	c.1561G>A	c.(1561-1563)GAG>AAG	p.E521K	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	521	Fibronectin type-III 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GCACGCTTCCGAGATCAGCAG	0.592													8	64					0	0	1	0	0	
SOX7	83595	broad.mit.edu	37	8	10583650	10583650	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:10583650G>T	uc003wtf.2	-	2	844	c.765C>A	c.(763-765)CAC>CAA	p.H255Q	SOX7_uc011kwz.1_Missense_Mutation_p.H307Q	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	255					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		AGCCCAGGGGGTGGCTACAGT	0.697													6	32					3.59834e-05	3.81628e-05	1	1	0	
PSD3	23362	broad.mit.edu	37	8	18662245	18662245	+	Silent	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:18662245T>G	uc003wza.2	-	5	1901	c.1798A>C	c.(1798-1800)AGA>CGA	p.R600R	PSD3_uc003wyy.2_Silent_p.R66R|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	600	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ACATCTGATCTTTTGAATCTG	0.433													26	159					0	0	1	0	0	
GFRA2	2675	broad.mit.edu	37	8	21560366	21560366	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:21560366T>C	uc003wzu.1	-	7	1844	c.1169A>G	c.(1168-1170)GAC>GGC	p.D390G	GFRA2_uc003wzv.1_Missense_Mutation_p.D285G|GFRA2_uc003wzw.1_Missense_Mutation_p.D257G	NM_001495	NP_001486	O00451	GFRA2_HUMAN	GDNF family receptor alpha 2 isoform a	390						anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity				0				Colorectal(74;0.0189)|COAD - Colon adenocarcinoma(73;0.0727)		GCTGGTACTGTCACTGAGGTC	0.632													7	34					0	0	1	0	0	
EPB49	2039	broad.mit.edu	37	8	21925174	21925174	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:21925174A>G	uc011kyt.1	+	4	459	c.230A>G	c.(229-231)GAG>GGG	p.E77G	EPB49_uc010ltl.2_Missense_Mutation_p.E77G|EPB49_uc011kys.1_Missense_Mutation_p.E52G|EPB49_uc010ltn.2_Missense_Mutation_p.E52G|EPB49_uc011kyu.1_Missense_Mutation_p.E77G|EPB49_uc011kyv.1_Missense_Mutation_p.E77G|EPB49_uc010ltq.2_Missense_Mutation_p.E77G	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	77					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		GAACACGTGGAGCTGCCTCGC	0.662													4	72					0	0	1	0	0	
NUDT18	79873	broad.mit.edu	37	8	21965115	21965115	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:21965115G>T	uc003xaq.1	-	6	787	c.668C>A	c.(667-669)CCT>CAT	p.P223H	NUDT18_uc003xar.1_3'UTR	NM_024815	NP_079091	Q6ZVK8	NUD18_HUMAN	nudix (nucleoside diphosphate linked moiety	223							hydrolase activity|metal ion binding|protein binding				0				Colorectal(74;0.00185)|COAD - Colon adenocarcinoma(73;0.0608)|READ - Rectum adenocarcinoma(5;0.0986)		CTGCTCCATAGGGTCGAGGCC	0.617													6	86					2.7689e-08	3.01486e-08	1	1	0	
DCTN6	10671	broad.mit.edu	37	8	30040606	30040606	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:30040606C>A	uc003xhy.2	+	7	577	c.490C>A	c.(490-492)CTG>ATG	p.L164M		NM_006571	NP_006562	O00399	DCTN6_HUMAN	dynactin 6	164						centrosome	transferase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.099)|Kidney(114;0.119)		GACACTACAGCTGGATTTCTT	0.353													7	77					5.4927e-09	6.01115e-09	1	1	0	
TEX15	56154	broad.mit.edu	37	8	30695503	30695503	+	Nonsense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:30695503A>C	uc003xil.2	-	3	7148	c.7148T>G	c.(7147-7149)TTA>TGA	p.L2383*		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2383										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TTTTGGCGTTAAATGATTTCT	0.378													19	140					0	0	1	0	0	
MYST3	7994	broad.mit.edu	37	8	41801380	41801380	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:41801380T>G	uc010lxb.2	-	14	2658	c.2114A>C	c.(2113-2115)CAC>CCC	p.H705P	MYST3_uc010lxc.2_Missense_Mutation_p.H705P|MYST3_uc003xon.3_Missense_Mutation_p.H705P|MYST3_uc010lxd.2_Missense_Mutation_p.H705P	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	705	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GTCATTTTGGTGATAAAGGCA	0.458													10	88					0	0	1	0	0	
UBE2V2	7336	broad.mit.edu	37	8	48962467	48962467	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:48962467C>A	uc003xqm.2	+	3	241	c.220C>A	c.(220-222)CCA>ACA	p.P74T		NM_003350	NP_003341	Q15819	UB2V2_HUMAN	ubiquitin-conjugating enzyme E2v2	74					cell proliferation|DNA double-strand break processing|protein polyubiquitination|regulation of DNA repair	cytoplasm|nucleus|UBC13-MMS2 complex	acid-amino acid ligase activity|protein binding				0		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00171)|all_lung(136;0.00196)				ACCTAAATACCCAGAAGCTCC	0.299								Direct_reversal_of_damage|Rad6_pathway					4	73					4.096e-09	4.49408e-09	1	1	0	
RP1	6101	broad.mit.edu	37	8	55537275	55537275	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:55537275T>C	uc003xsd.1	+	4	981	c.833T>C	c.(832-834)GTT>GCT	p.V278A	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	278					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATTTATTCTGTTTCTTCTGAG	0.328													10	56					0	0	1	0	0	
PDE7A	5150	broad.mit.edu	37	8	66659908	66659908	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:66659908A>G	uc003xvq.2	-	4	426	c.414T>C	c.(412-414)GAT>GAC	p.D138D	PDE7A_uc003xvr.2_Silent_p.D138D|PDE7A_uc003xvp.2_Silent_p.D112D	NM_002604	NP_002595	Q13946	PDE7A_HUMAN	phosphodiesterase 7A isoform b	138						cell fraction|cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding				0			Epithelial(68;0.0509)|BRCA - Breast invasive adenocarcinoma(89;0.111)|all cancers(69;0.168)|OV - Ovarian serous cystadenocarcinoma(28;0.238)		Dyphylline(DB00651)|Ketotifen(DB00920)	CATTATAATCATCATCTAAAA	0.333													10	41					0	0	1	0	0	
CSPP1	79848	broad.mit.edu	37	8	68092151	68092151	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:68092151T>G	uc003xxi.2	+	28	3331	c.3300T>G	c.(3298-3300)AGT>AGG	p.S1100R	ARFGEF1_uc003xxl.1_Intron|CSPP1_uc003xxj.2_Missense_Mutation_p.S1065R|CSPP1_uc003xxk.2_Missense_Mutation_p.S720R|CSPP1_uc010lyw.2_Missense_Mutation_p.S160R	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	1100						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			AATCTGATAGTGCTTTTATTG	0.284													19	39					0	0	1	0	0	
PREX2	80243	broad.mit.edu	37	8	68931905	68931905	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:68931905T>C	uc003xxv.1	+	3	362	c.335T>C	c.(334-336)TTT>TCT	p.F112S	PREX2_uc003xxu.1_Missense_Mutation_p.F112S|PREX2_uc011lez.1_Intron	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	112	DH.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTTCTTCACTTTGTAGGATAA	0.353													6	49					0	0	1	0	0	
LAPTM4B	55353	broad.mit.edu	37	8	98828297	98828297	+	Silent	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:98828297C>A	uc003yia.2	+	4	726	c.570C>A	c.(568-570)GCC>GCA	p.A190A	LAPTM4B_uc010mbg.2_Intron	NM_018407	NP_060877	Q86VI4	LAP4B_HUMAN	lysosomal associated transmembrane protein 4	243					transport	endomembrane system|integral to membrane	protein binding			skin(1)	1	Breast(36;1.59e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.149)			AACGCGCAGCCTGGATCATCC	0.328													13	197					9.05144e-12	1.01253e-11	1	1	0	
PKHD1L1	93035	broad.mit.edu	37	8	110523098	110523098	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:110523098G>A	uc003yne.2	+	71	11592	c.11488G>A	c.(11488-11490)GTT>ATT	p.V3830I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3830	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATCTTATGAAGTTTACTTCAC	0.443										HNSCC(38;0.096)			26	145					0	0	1	0	0	
CSMD3	114788	broad.mit.edu	37	8	113303840	113303840	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:113303840A>G	uc003ynu.2	-	56	9032	c.8873T>C	c.(8872-8874)GTG>GCG	p.V2958A	CSMD3_uc003yns.2_Missense_Mutation_p.V2160A|CSMD3_uc003ynt.2_Missense_Mutation_p.V2918A|CSMD3_uc011lhx.1_Missense_Mutation_p.V2789A	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2958	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATAGAATACCACAGTGCCGTA	0.348										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	100					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133919106	133919106	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:133919106C>T	uc003ytw.2	+	17	3849	c.3808C>T	c.(3808-3810)CGC>TGC	p.R1270C	TG_uc010mdw.2_Missense_Mutation_p.R29C	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1270					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GGAGAGCGGACGCTGGGAGTC	0.647													7	29					0	0	1	0	0	
TG	7038	broad.mit.edu	37	8	133945896	133945896	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:133945896A>G	uc003ytw.2	+	24	4948	c.4907A>G	c.(4906-4908)AAT>AGT	p.N1636S	TG_uc010mdw.2_Missense_Mutation_p.N395S|TG_uc011ljb.1_Missense_Mutation_p.N69S	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1636	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACAAGTGACAATGTTGCCTGC	0.562													10	123					0	0	1	0	0	
ZNF707	286075	broad.mit.edu	37	8	144776211	144776211	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:144776211C>T	uc003yze.3	+	7	942	c.627C>T	c.(625-627)TGC>TGT	p.C209C	ZNF707_uc010mfh.2_Silent_p.C209C|ZNF707_uc010mfi.2_Silent_p.C209C|ZNF707_uc003yzf.3_Silent_p.C209C|ZNF707_uc003yzh.3_Silent_p.C136C|ZNF707_uc011lkq.1_RNA	NM_173831	NP_776192	Q96C28	ZN707_HUMAN	zinc finger protein 707	209	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;5.6e-41)|Epithelial(56;1.02e-39)|all cancers(56;9.65e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GCCCCGAGTGCGGCCAGACCT	0.677													3	19					0	0	1	0	0	
SPATC1	375686	broad.mit.edu	37	8	145095792	145095792	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:145095792C>A	uc011lkw.1	+	3	1192	c.1090C>A	c.(1090-1092)CCC>ACC	p.P364T	SPATC1_uc011lkx.1_Missense_Mutation_p.P364T	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	364										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCCCCCCATCCCCCTTCCCG	0.512													9	40					7.48243e-07	8.04502e-07	1	1	0	
CPSF1	29894	broad.mit.edu	37	8	145623307	145623307	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr8:145623307G>T	uc003zcj.2	-	20	2010	c.1935C>A	c.(1933-1935)CCC>CCA	p.P645P		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	645					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			ACTGCACGATGGGGGCGCCCA	0.652													8	47					0.0381472	0.0385971	1	1	0	
CBWD1	55871	broad.mit.edu	37	9	164038	164038	+	Splice_Site	SNP	C	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:164038C>G	uc003zga.3	-	5	537	c.431_splice	c.e5-1	p.G144_splice	CBWD1_uc010mgs.2_Splice_Site|CBWD1_uc003zgb.3_Splice_Site_p.G108_splice|CBWD1_uc003zgc.3_Splice_Site_p.G144_splice|CBWD1_uc011llr.1_Splice_Site_p.G108_splice	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1								ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		GCCACTGCACCTGAAAATATA	0.269													6	189					0	0	1	0	0	
KANK1	23189	broad.mit.edu	37	9	732452	732452	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:732452T>G	uc003zgl.1	+	10	3729	c.3080T>G	c.(3079-3081)GTC>GGC	p.V1027G	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_Missense_Mutation_p.V1027G|KANK1_uc003zgs.1_Missense_Mutation_p.V869G|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1027					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		GAGTGTGATGTCATTGAGTAT	0.458													6	132					0	0	1	0	0	
RFX3	5991	broad.mit.edu	37	9	3330369	3330369	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:3330369C>T	uc003zhr.2	-	5	676	c.364G>A	c.(364-366)GTC>ATC	p.V122I	RFX3_uc010mhd.2_Missense_Mutation_p.V122I|RFX3_uc003zhs.1_Missense_Mutation_p.V122I|RFX3_uc003zht.1_Missense_Mutation_p.V122I|RFX3_uc010mhe.1_Missense_Mutation_p.V122I	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	122					cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		CCTCCTGTGACGCCCATCTGA	0.532													21	65					0	0	1	0	0	
GLIS3	169792	broad.mit.edu	37	9	4117901	4117901	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:4117901A>G	uc003zhw.1	-	3	1306	c.1112T>C	c.(1111-1113)ATC>ACC	p.I371T	GLIS3_uc003zhx.1_Missense_Mutation_p.I526T|GLIS3_uc003zic.1_Missense_Mutation_p.I526T|GLIS3_uc003zie.1_Missense_Mutation_p.I526T|GLIS3_uc010mhh.1_Missense_Mutation_p.I401T|GLIS3_uc003zid.1_Missense_Mutation_p.I304T|GLIS3_uc010mhi.1_Missense_Mutation_p.I333T|GLIS3_uc003zif.1_Missense_Mutation_p.I304T|GLIS3_uc003zig.1_Missense_Mutation_p.I370T|GLIS3_uc003zih.1_Missense_Mutation_p.I304T|GLIS3_uc003zhy.1_Missense_Mutation_p.I304T|GLIS3_uc003zhz.1_Missense_Mutation_p.I304T|GLIS3_uc003zib.1_Missense_Mutation_p.I370T|GLIS3_uc010mhg.1_Missense_Mutation_p.I304T	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	371					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		GCGCTGGTCGATGTGGACCTT	0.597													5	105					0	0	1	0	0	
C9orf46	55848	broad.mit.edu	37	9	5358278	5358278	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:5358278T>C	uc003zjc.2	-	6	609	c.405A>G	c.(403-405)AAA>AAG	p.K135K	C9orf46_uc003zjd.2_Silent_p.K135K	NM_018465	NP_060935	Q9HBL7	CI046_HUMAN	hypothetical protein LOC55848	135						integral to membrane				ovary(1)	1	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.00106)|Lung(218;0.125)		CCTTTCTGGCTTTTTCAATGC	0.348													4	77					0	0	1	0	0	
PTPRD	5789	broad.mit.edu	37	9	8339045	8339045	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:8339045C>A	uc003zkk.2	-	42	5967	c.5256G>T	c.(5254-5256)GAG>GAT	p.E1752D	PTPRD_uc003zkp.2_Missense_Mutation_p.E1346D|PTPRD_uc003zkq.2_Missense_Mutation_p.E1345D|PTPRD_uc003zkr.2_Missense_Mutation_p.E1336D|PTPRD_uc003zks.2_Missense_Mutation_p.E1345D|PTPRD_uc003zkl.2_Missense_Mutation_p.E1743D|PTPRD_uc003zkm.2_Missense_Mutation_p.E1739D|PTPRD_uc003zkn.2_Missense_Mutation_p.E1341D|PTPRD_uc003zko.2_Missense_Mutation_p.E1342D	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1752	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GGTGACATTTCTCCTAAAAGG	0.338										TSP Lung(15;0.13)			8	33					0.00307968	0.00319512	1	1	0	
PLAA	9373	broad.mit.edu	37	9	26910403	26910403	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:26910403T>C	uc003zqd.2	-	12	2015	c.1590A>G	c.(1588-1590)ACA>ACG	p.T530T	PLAA_uc003zqe.2_Silent_p.T530T	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	530					phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		AAATATTCATTGTTTTAGATG	0.303													11	55					0	0	1	0	0	
LINGO2	158038	broad.mit.edu	37	9	27948864	27948864	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:27948864G>T	uc003zqu.1	-	2	2000	c.1806C>A	c.(1804-1806)AAC>AAA	p.N602K	LINGO2_uc010mjf.1_Missense_Mutation_p.N602K|LINGO2_uc003zqv.1_Missense_Mutation_p.N602K	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	602	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TCATTTTCATGTTGAACCTCC	0.443													18	95					6.94344e-10	7.66728e-10	1	1	0	
AQP7	364	broad.mit.edu	37	9	33386990	33386990	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:33386990A>C	uc003zst.2	-	4	417	c.245T>G	c.(244-246)GTG>GGG	p.V82G	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.V25G|AQP7_uc010mjs.2_Intron|AQP7_uc010mjt.2_Intron|AQP7_uc011lnx.1_Missense_Mutation_p.V82G|AQP7_uc011lny.1_Missense_Mutation_p.V81G|AQP7_uc003zss.3_Intron|AQP7_uc011lnz.1_Intron|AQP7_uc011loa.1_Intron	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	82	Helical; (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		TGCCACGTGCACTCCCATGGT	0.582													9	137					0	0	1	0	0	
RUSC2	9853	broad.mit.edu	37	9	35547010	35547010	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:35547010T>A	uc003zww.2	+	2	747	c.492T>A	c.(490-492)AGT>AGA	p.S164R	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.S164R	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	164						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			CAACACGCAGTCGGGCTGGAG	0.622													6	54					0	0	1	0	0	
OR13J1	392309	broad.mit.edu	37	9	35869594	35869594	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:35869594T>C	uc011lph.1	-	1	805	c.805A>G	c.(805-807)ATC>GTC	p.I269V		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			TCATCAGAGATGTGGGCTTCC	0.537													5	56					0	0	1	0	0	
FRMPD1	22844	broad.mit.edu	37	9	37746136	37746136	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:37746136G>A	uc004aag.1	+	16	4151	c.4107G>A	c.(4105-4107)CCG>CCA	p.P1369P	FRMPD1_uc004aah.1_Silent_p.P1369P	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1369						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TCACCTCACCGCCCTCTGCGG	0.647													8	149					0	0	1	0	0	
CNTNAP3	79937	broad.mit.edu	37	9	39103747	39103747	+	Missense_Mutation	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:39103747G>T	uc004abi.2	-	16	2769	c.2530C>A	c.(2530-2532)CTG>ATG	p.L844M	CNTNAP3_uc004abj.2_Missense_Mutation_p.L843M|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.L844M	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	844	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTACCACGCAGCTCAATCCTG	0.428													7	39					0.000157383	0.000165484	1	1	0	
PRKACG	5568	broad.mit.edu	37	9	71628021	71628021	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:71628021C>T	uc004agy.2	-	1	1019	c.988G>A	c.(988-990)GAC>AAC	p.D330N		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	330	AGC-kinase C-terminal.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TCCTCGTAGTCGTCAAAGTTA	0.527													9	86					0	0	1	0	0	
C9orf95	54981	broad.mit.edu	37	9	77684723	77684723	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:77684723A>G	uc004aju.2	-	6	922	c.324T>C	c.(322-324)CTT>CTC	p.L108L	C9orf95_uc004ajs.3_Silent_p.L112L|C9orf95_uc004ajr.3_Silent_p.L108L|C9orf95_uc004ajt.3_Intron	NM_017881	NP_060351	Q9NWW6	NRK1_HUMAN	nicotinamide riboside kinase 1 isoform 1	108					pyridine nucleotide biosynthetic process		ATP binding|metal ion binding|ribosylnicotinamide kinase activity				0						ATATAGTGTCAAGGGGCCTAA	0.363													13	49					0	0	1	0	0	
RPSAP9	653162	broad.mit.edu	37	9	79013703	79013703	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:79013703T>C	uc011lsj.1	+	1	189	c.89T>C	c.(88-90)CTT>CCT	p.L30P		NR_026890				SubName: Full=Laminin receptor-like protein LAMRL5;												0						GGCACCAATCTTGACTTCCAG	0.378													6	21					0	0	1	0	0	
FLJ46321	389763	broad.mit.edu	37	9	84607874	84607874	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:84607874T>C	uc004amn.2	+	4	2536	c.2489T>C	c.(2488-2490)CTG>CCG	p.L830P		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	830						integral to membrane					0						GAAAATGCCCTGACAGTACGT	0.453													4	75					0	0	1	0	0	
GOLM1	51280	broad.mit.edu	37	9	88655669	88655669	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:88655669G>A	uc004aol.2	-	6	780	c.582C>T	c.(580-582)AAC>AAT	p.N194N	GOLM1_uc010mqd.1_RNA|GOLM1_uc004aom.2_Silent_p.N194N	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	194	Potential.|Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						GTCTCTGGTCGTTGTTTTCAC	0.463													14	60					0	0	1	0	0	
PHF2	5253	broad.mit.edu	37	9	96425855	96425855	+	Silent	SNP	G	A	A	rs142130095		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:96425855G>A	uc004aub.2	+	14	2022	c.1875G>A	c.(1873-1875)TCG>TCA	p.S625S	PHF2_uc011lug.1_Silent_p.S508S|PHF2_uc004auc.2_Silent_p.S44S	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	625	Lys-rich.				liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		TAGAGAAGTCGCCTCTAGCTG	0.507													16	58					0	0	1	0	0	
FAM22G	441457	broad.mit.edu	37	9	99697671	99697671	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:99697671C>T	uc004awq.1	+	3	1490	c.775C>T	c.(775-777)CGG>TGG	p.R259W	HIATL2_uc004awr.1_Intron	NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	259										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				GGGACTGTGGCGGGCCATGCG	0.622													14	74					0	0	1	0	0	
OR13C2	392376	broad.mit.edu	37	9	107367621	107367621	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:107367621G>T	uc011lvq.1	-	1	288	c.288C>A	c.(286-288)GGC>GGA	p.G96G		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCACTGCACAGCCAGAAAGGG	0.532													7	124					0.00621372	0.00638487	1	1	0	
ABCA1	19	broad.mit.edu	37	9	107591376	107591376	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:107591376G>A	uc004bcl.2	-	15	2249	c.1936C>T	c.(1936-1938)CTG>TTG	p.L646L		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	646	Helical; (Potential).				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATCCAGGCCAGCGTCATGAAG	0.562													8	37					0	0	1	0	0	
ZNF883	169834	broad.mit.edu	37	9	115759835	115759835	+	Missense_Mutation	SNP	T	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:115759835T>G	uc011lwy.1	-	5	1944	c.705A>C	c.(703-705)AAA>AAC	p.K235N		NM_001101338	NP_001094808	P0CG24	ZN883_HUMAN	hypothetical protein LOC169834	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTCATAGGGTTTTTCTCCAG	0.428													4	44					0	0	1	0	0	
RGS3	5998	broad.mit.edu	37	9	116279845	116279845	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:116279845C>T	uc004bhq.2	+	17	1908	c.1699C>T	c.(1699-1701)CGG>TGG	p.R567W	RGS3_uc004bhr.2_Missense_Mutation_p.R455W|RGS3_uc004bhs.2_Missense_Mutation_p.R457W|RGS3_uc004bht.2_Missense_Mutation_p.R286W|RGS3_uc010muy.2_Missense_Mutation_p.R286W|RGS3_uc004bhu.2_Missense_Mutation_p.R193W	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	567					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TAATCCTGCCCGGACCCTCCT	0.557													15	96					0	0	1	0	0	
COL27A1	85301	broad.mit.edu	37	9	116930295	116930295	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:116930295G>A	uc011lxl.1	+	3	460	c.460G>A	c.(460-462)GGG>AGG	p.G154R	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.G4R	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	154	Laminin G-like.|TSP N-terminal.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CATGCACGACGGGCGCTGGCA	0.692													10	44					0	0	1	0	0	
DFNB31	25861	broad.mit.edu	37	9	117266634	117266634	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:117266634C>T	uc004biz.3	-	1	1097	c.448G>A	c.(448-450)GAG>AAG	p.E150K	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Missense_Mutation_p.E150K|DFNB31_uc004bjb.2_Missense_Mutation_p.E150K	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	150	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CCCAAGCCCTCGTGGGCCTTG	0.706													15	87					0	0	1	0	0	
PAPPA	5069	broad.mit.edu	37	9	118989725	118989725	+	Silent	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:118989725A>G	uc004bjn.2	+	6	2508	c.2127A>G	c.(2125-2127)GCA>GCG	p.A709A	PAPPA_uc011lxp.1_Silent_p.A404A|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	709					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGGGATCAGCATGTCATCTTT	0.532													25	136					0	0	1	0	0	
ASTN2	23245	broad.mit.edu	37	9	119737575	119737575	+	Missense_Mutation	SNP	A	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:119737575A>C	uc004bjs.1	-	10	1902	c.1801T>G	c.(1801-1803)TTT>GTT	p.F601V	ASTN2_uc004bjr.1_Missense_Mutation_p.F597V|ASTN2_uc004bjt.1_Missense_Mutation_p.F550V	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	601	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGAACCACAAAGCTTTTGCTG	0.547													7	93					0	0	1	0	0	
TLR4	7099	broad.mit.edu	37	9	120475722	120475722	+	Missense_Mutation	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:120475722A>T	uc004bjz.2	+	3	1607	c.1316A>T	c.(1315-1317)GAG>GTG	p.E439V	TLR4_uc004bka.2_Missense_Mutation_p.E399V|TLR4_uc004bkb.2_Missense_Mutation_p.E239V	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	439	LRR 13.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CAAATGAGTGAGTTTTCAGTA	0.388													30	85					0	0	1	0	0	
DAB2IP	153090	broad.mit.edu	37	9	124543823	124543823	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:124543823A>G	uc004bln.2	+	15	3380	c.3311A>G	c.(3310-3312)GAT>GGT	p.D1104G	DAB2IP_uc004blo.2_Missense_Mutation_p.D1008G|DAB2IP_uc004blp.2_Missense_Mutation_p.D537G	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	1132	Potential.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						AAGATCATTGATGCCCAGGTG	0.547													17	57					0	0	1	0	0	
MORN5	254956	broad.mit.edu	37	9	124936902	124936902	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:124936902C>T	uc004blw.2	+	4	497	c.435C>T	c.(433-435)AAC>AAT	p.N145N	MORN5_uc011lyn.1_Silent_p.N145N|MORN5_uc011lyo.1_3'UTR	NM_198469	NP_940871	Q5VZ52	MORN5_HUMAN	MORN repeat containing 5	145											0						TTCTAAGAAACGCAGGTAGGT	0.448													13	88					0	0	1	0	0	
OR1L8	138881	broad.mit.edu	37	9	125330470	125330470	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:125330470G>A	uc004bmp.1	-	1	287	c.287C>T	c.(286-288)GCT>GTT	p.A96V		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CAGACACCCAGCATAGGAGAT	0.473													8	73					0	0	1	0	0	
OR1L6	392390	broad.mit.edu	37	9	125512217	125512217	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:125512217A>G	uc011lzc.1	+	1	199	c.199A>G	c.(199-201)ATC>GTC	p.I67V		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	67	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTCTTTGCCATCTTCCTCAT	0.537													6	149					0	0	1	0	0	
GAPVD1	26130	broad.mit.edu	37	9	128064717	128064717	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:128064717A>G	uc010mwx.2	+	5	967	c.641A>G	c.(640-642)CAC>CGC	p.H214R	GAPVD1_uc004bpo.2_Missense_Mutation_p.H214R|GAPVD1_uc011lzs.1_Missense_Mutation_p.H214R|GAPVD1_uc004bpp.2_Missense_Mutation_p.H214R|GAPVD1_uc004bpq.2_Missense_Mutation_p.H214R|GAPVD1_uc004bpr.2_Missense_Mutation_p.H214R|GAPVD1_uc004bps.2_Missense_Mutation_p.H214R|GAPVD1_uc010mwy.1_Missense_Mutation_p.H73R	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	214	Ras-GAP.				endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GATGAAGATCACCTGGAAACA	0.393													9	37					0	0	1	0	0	
GAPVD1	26130	broad.mit.edu	37	9	128099344	128099344	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:128099344G>A	uc010mwx.2	+	16	2802	c.2476G>A	c.(2476-2478)GCC>ACC	p.A826T	GAPVD1_uc011lzs.1_Missense_Mutation_p.A826T|GAPVD1_uc004bpp.2_Missense_Mutation_p.A853T|GAPVD1_uc004bpq.2_Missense_Mutation_p.A826T|GAPVD1_uc004bpr.2_Missense_Mutation_p.A805T|GAPVD1_uc004bps.2_Missense_Mutation_p.A826T|GAPVD1_uc010mwy.1_Intron	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	826					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTCTCTGCTGGCCATGTTTGA	0.488													11	78					0	0	1	0	0	
ASB6	140459	broad.mit.edu	37	9	132401727	132401727	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:132401727A>G	uc004byf.1	-	3	522	c.356T>C	c.(355-357)GTG>GCG	p.V119A	ASB6_uc004bye.1_Missense_Mutation_p.V44A|ASB6_uc004byg.1_Missense_Mutation_p.V119A|ASB6_uc011mbt.1_Missense_Mutation_p.V40A|ASB6_uc010myx.1_Missense_Mutation_p.V119A	NM_017873	NP_060343	Q9NWX5	ASB6_HUMAN	ankyrin repeat and SOCS box-containing 6 isoform	119	ANK 2.				intracellular signal transduction	cytoplasm					0		Ovarian(14;0.00556)				CAGCAGCTCCACCATGTCCGG	0.617													7	31					0	0	1	0	0	
MED22	6837	broad.mit.edu	37	9	136208461	136208461	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:136208461A>G	uc004cdc.2	-	5	731	c.497T>C	c.(496-498)CTC>CCC	p.L166P	MED22_uc004cdd.2_3'UTR	NM_133640	NP_598395	Q15528	MED22_HUMAN	mediator complex subunit 22 isoform b	166					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|mediator complex|soluble fraction	protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.14e-06)|Epithelial(140;8.2e-06)|all cancers(34;6.94e-05)		AGGGGCCGAGAGGCCATCAGC	0.647													5	28					0	0	1	0	0	
TMEM8C	389827	broad.mit.edu	37	9	136380685	136380685	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:136380685G>A	uc011mdk.1	-	4	444	c.444C>T	c.(442-444)AGC>AGT	p.S148S		NM_001080483	NP_001073952	A6NI61	TMM8C_HUMAN	transmembrane protein 8C	148						integral to membrane					0						GGGTGTAGACGCTCTTGTCTG	0.597													5	101					0	0	1	0	0	
BRD3	8019	broad.mit.edu	37	9	136913497	136913497	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:136913497G>A	uc004cew.2	-	6	982	c.794C>T	c.(793-795)CCG>CTG	p.P265L	BRD3_uc004cex.2_Missense_Mutation_p.P265L	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	265						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		TGACAACGGCGGGGGCGACTC	0.637			T	NUT|C15orf55	lethal midline carcinoma of young people								14	68					0	0	1	0	0	
COL5A1	1289	broad.mit.edu	37	9	137726910	137726910	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:137726910T>C	uc004cfe.2	+	65	5612	c.5230T>C	c.(5230-5232)TAC>CAC	p.Y1744H	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1744	Fibrillar collagen NC1.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GAACGTCACCTACCACTGCTA	0.637													3	31					0	0	1	0	0	
KCNT1	57582	broad.mit.edu	37	9	138651627	138651627	+	Silent	SNP	C	T	T	rs148562086	byFrequency	TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:138651627C>T	uc011mdq.1	+	11	1031	c.957C>T	c.(955-957)GAC>GAT	p.D319D	KCNT1_uc011mdr.1_Silent_p.D146D|KCNT1_uc010nbf.2_Silent_p.D274D|KCNT1_uc004cgo.1_Silent_p.D68D	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	319						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GCTACGGTGACGTCACGCCCA	0.647													8	50					0	0	1	0	0	
LCN8	138307	broad.mit.edu	37	9	139651016	139651016	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:139651016C>T	uc004cjb.1	-	3	533	c.184G>A	c.(184-186)GTG>ATG	p.V62M	LCN8_uc004cja.2_5'Flank|LCN8_uc004cjc.1_Missense_Mutation_p.V62M	NM_178469	NP_848564	Q6JVE9	LCN8_HUMAN	lipocalin 8	85					transport	extracellular region	binding			pancreas(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;5.56e-06)|Epithelial(140;8.32e-05)		TCTGAGCCCACGATCTTCTCT	0.552													18	121					0	0	1	0	0	
TUBB2C	10383	broad.mit.edu	37	9	140137547	140137547	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr9:140137547A>G	uc004cmh.1	+	4	979	c.877A>G	c.(877-879)ATG>GTG	p.M293V	TUBB2C_uc004cmg.1_Missense_Mutation_p.M147V	NM_006088	NP_006079	P68371	TBB2C_HUMAN	tubulin, beta, 2	293					'de novo' posttranslational protein folding|cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding|structural molecule activity|unfolded protein binding			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CACCCAGCAGATGTTTGATGC	0.652													16	77					0	0	1	0	0	
GPR143	4935	broad.mit.edu	37	X	9716642	9716642	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:9716642C>T	uc004cst.1	-	4	580	c.580G>A	c.(580-582)GCC>ACC	p.A194T		NM_000273	NP_000264	P51810	GP143_HUMAN	G protein-coupled receptor 143	174	Extracellular (Potential).				calcium-mediated signaling using intracellular calcium source|eye pigment biosynthetic process|melanosome organization|melanosome transport|phosphatidylinositol-mediated signaling|regulation of calcium-mediated signaling|visual perception	apical plasma membrane|Golgi apparatus|integral to membrane|lysosomal membrane|melanosome membrane|membrane fraction	dopamine binding|L-DOPA receptor activity|protein binding|tyrosine binding			ovary(1)	1		Hepatocellular(5;0.000888)				TAGAGCATGGCGGCTCCCTCC	0.587													9	45					0	0	1	0	0	
MAP3K15	389840	broad.mit.edu	37	X	19391803	19391803	+	Silent	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:19391803G>A	uc004czk.1	-	22	2846	c.1209C>T	c.(1207-1209)CGC>CGT	p.R403R	MAP3K15_uc004czj.1_Silent_p.R363R|MAP3K15_uc004czi.1_5'Flank	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	928							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GGACGACACCGCGGGGACCTT	0.677													3	18					0	0	1	0	0	
DMD	1756	broad.mit.edu	37	X	31893303	31893303	+	Splice_Site	SNP	A	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:31893303A>T	uc004dda.1	-	48	7342	c.7098_splice	c.e48+1	p.Q2366_splice	DMD_uc004dcr.1_Splice_Site|DMD_uc004dcs.1_Splice_Site|DMD_uc004dct.1_Splice_Site|DMD_uc004dcu.1_Splice_Site|DMD_uc004dcv.1_Splice_Site|DMD_uc004dcw.2_Splice_Site_p.Q1022_splice|DMD_uc004dcx.2_Splice_Site_p.Q1025_splice|DMD_uc004dcz.2_Splice_Site_p.Q2243_splice|DMD_uc004dcy.1_Splice_Site_p.Q2362_splice|DMD_uc004ddb.1_Splice_Site_p.Q2358_splice	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform						muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AAAGTTCCCTACCTTAACGTC	0.294													4	20					0	0	1	0	0	
DMD	1756	broad.mit.edu	37	X	32328290	32328290	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:32328290T>C	uc004dda.1	-	42	6270	c.6026A>G	c.(6025-6027)CAA>CGA	p.Q2009R	DMD_uc004dcw.2_Missense_Mutation_p.Q665R|DMD_uc004dcx.2_Missense_Mutation_p.Q668R|DMD_uc004dcz.2_Missense_Mutation_p.Q1886R|DMD_uc004dcy.1_Missense_Mutation_p.Q2005R|DMD_uc004ddb.1_Missense_Mutation_p.Q2001R|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2009					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TAATAGGGCTTGTGAGACATG	0.413													4	72					0	0	1	0	0	
AKAP4	8852	broad.mit.edu	37	X	49957452	49957452	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:49957452G>A	uc004dow.1	-	5	2036	c.1912C>T	c.(1912-1914)CTT>TTT	p.L638F	AKAP4_uc004dov.1_Missense_Mutation_p.L255F|AKAP4_uc010njp.1_Missense_Mutation_p.L460F|AKAP4_uc004dou.1_Missense_Mutation_p.L629F	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	638					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TTCTCATTAAGCAGTTTCTGA	0.478													19	127					0	0	1	0	0	
CCNB3	85417	broad.mit.edu	37	X	50055619	50055619	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:50055619T>C	uc004dox.3	+	7	3708	c.3410T>C	c.(3409-3411)ATG>ACG	p.M1137T	CCNB3_uc004doy.2_Missense_Mutation_p.M1137T|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Missense_Mutation_p.M29T	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1137					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TTCAGTTACATGAAAGAGAGA	0.418													8	85					0	0	1	0	0	
BMP15	9210	broad.mit.edu	37	X	50659507	50659507	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:50659507A>G	uc011mnw.1	+	2	1079	c.1079A>G	c.(1078-1080)TAT>TGT	p.Y360C		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	360					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					TGTGTCCCGTATAAGTATGTT	0.458													6	85					0	0	1	0	0	
ITIH5L	347365	broad.mit.edu	37	X	54784484	54784484	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:54784484T>C	uc004dtj.2	-	8	2053	c.2023A>G	c.(2023-2025)ACT>GCT	p.T675A		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	675					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GTAGAGGCAGTAGTAGTTGAG	0.512													14	75					0	0	1	0	0	
LAS1L	81887	broad.mit.edu	37	X	64738227	64738227	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:64738227A>G	uc004dwa.1	-	12	1639	c.1567T>C	c.(1567-1569)TCC>CCC	p.S523P	LAS1L_uc004dwc.1_Missense_Mutation_p.S506P|LAS1L_uc004dwd.1_Missense_Mutation_p.S464P|LAS1L_uc004dvy.1_Missense_Mutation_p.S36P|LAS1L_uc004dvz.1_Missense_Mutation_p.S36P	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	523						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						CCAATGGGGGAGGCCTCAGAG	0.577													6	104					0	0	1	0	0	
STARD8	9754	broad.mit.edu	37	X	67941391	67941391	+	Missense_Mutation	SNP	T	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:67941391T>A	uc004dxa.2	+	9	2394	c.2022T>A	c.(2020-2022)GAT>GAA	p.D674E	STARD8_uc004dxb.2_Missense_Mutation_p.D754E|STARD8_uc004dxc.3_Missense_Mutation_p.D674E	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	674	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						TCCCCAAGGATCAGTGGTTGG	0.562													5	56					0	0	1	0	0	
P2RY4	5030	broad.mit.edu	37	X	69478742	69478742	+	Missense_Mutation	SNP	G	A	A	rs149438352		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:69478742G>A	uc004dxz.1	-	1	913	c.733C>T	c.(733-735)CGC>TGC	p.R245C		NM_002565	NP_002556	P51582	P2RY4_HUMAN	pyrimidinergic receptor P2Y4	245	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1						GCTATGGTGCGGAGAGAGCGG	0.577													4	37					0	0	1	0	0	
KIAA2022	340533	broad.mit.edu	37	X	73960013	73960013	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:73960013T>C	uc004eby.2	-	3	4996	c.4379A>G	c.(4378-4380)GAG>GGG	p.E1460G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1460					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTTACATTTCTCATCTCTCAG	0.433													6	79					0	0	1	0	0	
PCDH11X	27328	broad.mit.edu	37	X	91133620	91133620	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:91133620T>C	uc004efk.1	+	2	3226	c.2381T>C	c.(2380-2382)GTG>GCG	p.V794A	PCDH11X_uc004efl.1_Missense_Mutation_p.V794A|PCDH11X_uc004efo.1_Missense_Mutation_p.V794A|PCDH11X_uc010nmv.1_Missense_Mutation_p.V794A|PCDH11X_uc004efm.1_Missense_Mutation_p.V794A|PCDH11X_uc004efn.1_Missense_Mutation_p.V794A|PCDH11X_uc004efh.1_Missense_Mutation_p.V794A|PCDH11X_uc004efj.1_Missense_Mutation_p.V794A	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	794	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GAAGCACCAGTGACCCCAAAT	0.448													23	100					0	0	1	0	0	
PCDH19	57526	broad.mit.edu	37	X	99551676	99551676	+	Missense_Mutation	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:99551676C>T	uc010nmz.2	-	6	4722	c.3046G>A	c.(3046-3048)GCA>ACA	p.A1016T	PCDH19_uc004efw.3_Missense_Mutation_p.A968T|PCDH19_uc004efx.3_Missense_Mutation_p.A969T	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1016	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						CCAAAGGTTGCGAAAGTCCGT	0.562													8	68					0	0	1	0	0	
TRMT2B	79979	broad.mit.edu	37	X	100297270	100297270	+	Silent	SNP	G	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:100297270G>T	uc004egq.2	-	2	308	c.9C>A	c.(7-9)GGC>GGA	p.G3G	TRMT2B_uc004egp.2_RNA|TRMT2B_uc004egr.2_Silent_p.G3G|TRMT2B_uc004egs.2_Silent_p.G3G|TRMT2B_uc004egt.2_Silent_p.G3G|TRMT2B_uc004egu.2_5'UTR|TRMT2B_uc004egv.2_Silent_p.G3G	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B	3							tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						TTCTCTTAAGGCCTGCCATCC	0.473													8	56					7.48243e-07	8.04502e-07	1	1	0	
TAF7L	54457	broad.mit.edu	37	X	100536708	100536708	+	Silent	SNP	C	T	T			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:100536708C>T	uc004ehb.2	-	6	732	c.720G>A	c.(718-720)AAG>AAA	p.K240K	TAF7L_uc004eha.2_Silent_p.K154K|TAF7L_uc004ehc.1_Silent_p.K154K	NM_024885	NP_079161	Q5H9L4	TAF7L_HUMAN	TATA box binding protein-associated factor, RNA	240					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription initiation from RNA polymerase II promoter	cytoplasm|transcription factor TFIID complex	binding			breast(1)	1						TGTAACTAACCTTTTTTTGTG	0.363													23	156					0	0	1	0	0	
GPRASP1	9737	broad.mit.edu	37	X	101910109	101910109	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:101910109T>C	uc004ejj.3	+	5	2069	c.1268T>C	c.(1267-1269)ATA>ACA	p.I423T	GPRASP1_uc004eji.3_Missense_Mutation_p.I423T|GPRASP1_uc010nod.2_Missense_Mutation_p.I423T	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	423						cytoplasm	protein binding			ovary(1)|lung(1)	2						GAAGCCAGCATAGAGTCCAGT	0.547													17	87					0	0	1	0	0	
GPRASP2	114928	broad.mit.edu	37	X	101970627	101970627	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:101970627A>G	uc004ejk.2	+	4	2164	c.830A>G	c.(829-831)TAT>TGT	p.Y277C	GPRASP2_uc004ejl.2_Missense_Mutation_p.Y277C|GPRASP2_uc004ejm.2_Missense_Mutation_p.Y277C|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	277						cytoplasm	protein binding			ovary(1)	1						CAAGAAGCCTATGTTGATTCC	0.522													24	150					0	0	1	0	0	
BHLHB9	80823	broad.mit.edu	37	X	102004550	102004550	+	Silent	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:102004550T>C	uc010nog.2	+	4	1198	c.627T>C	c.(625-627)AAT>AAC	p.N209N	BHLHB9_uc011mrq.1_Silent_p.N209N|BHLHB9_uc011mrr.1_Silent_p.N209N|BHLHB9_uc011mrs.1_Silent_p.N209N|BHLHB9_uc011mrt.1_Silent_p.N209N|BHLHB9_uc004ejo.2_Silent_p.N209N|BHLHB9_uc011mru.1_Silent_p.N209N|BHLHB9_uc011mrv.1_Silent_p.N209N	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	209						cytoplasm|nucleus	binding			ovary(2)	2						ATGAAAAAAATAGGCCCAAGG	0.463													6	209					0	0	1	0	0	
TCEAL1	9338	broad.mit.edu	37	X	102885195	102885195	+	Missense_Mutation	SNP	A	G	G			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:102885195A>G	uc004eks.2	+	3	525	c.351A>G	c.(349-351)ATA>ATG	p.I117M	TCEAL1_uc004ekt.2_Missense_Mutation_p.I117M|TCEAL1_uc004eku.2_Missense_Mutation_p.I117M	NM_001006640	NP_001006641	Q15170	TCAL1_HUMAN	transcription elongation factor A (SII)-like 1	115					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAGGGGACATACATGGCAGAA	0.438													4	62					0	0	1	0	0	
CHRDL1	91851	broad.mit.edu	37	X	109922617	109922617	+	Missense_Mutation	SNP	T	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:109922617T>C	uc004eou.3	-	11	1542	c.1193A>G	c.(1192-1194)AAG>AGG	p.K398R	CHRDL1_uc004eov.2_Missense_Mutation_p.K387R|CHRDL1_uc004eow.2_Missense_Mutation_p.K396R|CHRDL1_uc010nps.2_Missense_Mutation_p.K397R|CHRDL1_uc004eot.2_Missense_Mutation_p.K317R|CHRDL1_uc011mss.1_Missense_Mutation_p.K312R	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	390					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						AAACATCCTCTTGGAGATCTT	0.453													11	79					0	0	1	0	0	
DCX	1641	broad.mit.edu	37	X	110644413	110644413	+	Silent	SNP	G	C	C			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:110644413G>C	uc004epd.2	-	3	925	c.753C>G	c.(751-753)GCC>GCG	p.A251A	DCX_uc011msv.1_Silent_p.A251A|DCX_uc004epe.2_Silent_p.A170A|DCX_uc004epf.2_Silent_p.A170A|DCX_uc004epg.2_Silent_p.A170A	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	251					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TGTTCTCCCTGGCCTGTGCAC	0.527													19	60					0	0	1	0	0	
TRPC5	7224	broad.mit.edu	37	X	111020035	111020035	+	Missense_Mutation	SNP	C	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:111020035C>A	uc004epl.1	-	11	3347	c.2428G>T	c.(2428-2430)GGG>TGG	p.G810W		NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	810	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGAGGTGGCCCATGGCAAGTC	0.488													36	176					2.6416e-12	2.96661e-12	1	1	0	
HS6ST2	90161	broad.mit.edu	37	X	131762948	131762948	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:131762948G>A	uc011mve.1	-	4	1537	c.1121C>T	c.(1120-1122)CCC>CTC	p.P374L	HS6ST2_uc011mvb.1_Missense_Mutation_p.P268L|HS6ST2_uc011mvc.1_Missense_Mutation_p.P228L|HS6ST2_uc011mvd.1_Missense_Mutation_p.P414L|HS6ST2_uc011mva.1_Missense_Mutation_p.P100L	NM_147175	NP_671704	Q96MM7	H6ST2_HUMAN	heparan sulfate 6-O-sulfotransferase 2 isoform	374	Lumenal (Potential).					integral to membrane	sulfotransferase activity				0	Acute lymphoblastic leukemia(192;0.000127)					CTCTTTGAGGGGGCAGCCAGA	0.582													6	42					0	0	1	0	0	
GPR112	139378	broad.mit.edu	37	X	135427817	135427817	+	Missense_Mutation	SNP	G	A	A			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:135427817G>A	uc004ezu.1	+	6	2243	c.1952G>A	c.(1951-1953)AGC>AAC	p.S651N	GPR112_uc010nsb.1_Missense_Mutation_p.S446N|GPR112_uc010nsc.1_Missense_Mutation_p.S418N	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	651	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGTTCTCCAGCAATGAGACC	0.473													6	75					0	0	1	0	0	
PLXNB3	5365	broad.mit.edu	37	X	153039391	153039391	+	Silent	SNP	G	A	A	rs149200734		TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chrX:153039391G>A	uc004fii.2	+	20	3531	c.3357G>A	c.(3355-3357)CCG>CCA	p.P1119P	PLXNB3_uc010nuk.2_Silent_p.P1142P|PLXNB3_uc011mzd.1_Silent_p.P758P|PLXNB3_uc004fij.1_5'Flank|SRPK3_uc004fik.2_5'Flank	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1119	IPT/TIG 3.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GAGCCCACCCGCAGCGGGTCT	0.667													7	105					0	0	1	0	0	
BCL11B	64919	broad.mit.edu	37	14	99641679	99641679	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HU-A4H4-01A-21D-A25D-08	TCGA-HU-A4H4-11A-11D-A25E-08									Somatic	Phase_I	Capture				Illumina GAIIx	547ef3c8-0c69-47cb-831e-6345a197bc7e	be800cd2-7e29-43cd-942a-d62c1297a71d	g.chr14:99641679delG	uc001yga.2	-	4	1761	c.1494delC	c.(1492-1494)CCCfs	p.P498fs	BCL11B_uc001ygb.2_Frame_Shift_Del_p.P427fs	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	498						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		TGCCGGGCTCGGGGGAGCTGG	0.721			T	TLX3	T-ALL								3	5	---	---	---	---						.
