Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACBD5	91452	genome.wustl.edu	37	10	27520705	27520705	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	27520705	27520705	A	C	SNP	ACBD5	NM_145698.3	human	genbank	58_37c	-1	validated	missense	c.347	p.M116R	1.000	HMMPfam_ACBP,superfamily_ACBP	HMMPfam_ACBP,PatternScan_ACB_1,superfamily_ACBP	-	no_errors
AHNAK	79026	genome.wustl.edu	37	11	62297801	62297801	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	62297801	62297801	T	C	SNP	AHNAK	NM_001620.1	human	genbank	58_37c	-1	validated	missense	c.4088	p.K1363R	1.000	HMMPfam_CheC	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC	-	no_errors
ANKRD42	338699	genome.wustl.edu	37	11	82938872	82938872	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	82938872	82938872	A	T	SNP	ANKRD42	NM_182603.2	human	genbank	58_37c	+1	validated	missense	c.787	p.I263F	0.999	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,PatternScan_EF_HAND_1	-	no_errors
ARL11	115761	genome.wustl.edu	37	13	50204651	50204651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	50204651	50204651	C	T	SNP	ARL11	NM_138450.5	human	genbank	58_37c	+1	reviewed	missense	c.68	p.A23V	0.995	HMMSmart_ARF,HMMPfam_Arf,superfamily_SSF52540	HMMSmart_ARF,PatternScan_ARF,HMMPfam_Arf,superfamily_SSF52540	-	no_errors
ASB10	136371	genome.wustl.edu	37	7	150878405	150878405	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	150878405	150878405	T	C	SNP	ASB10	NM_001142459.1	human	genbank	58_37c	-1	reviewed	missense	c.860	p.D287G	0.663	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ATG2A	23130	genome.wustl.edu	37	11	64673972	64673972	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	64673972	64673972	A	C	SNP	ATG2A	NM_015104.2	human	genbank	58_37c	-1	validated	missense	c.3017	p.L1006R	1.000	NULL	PatternScan_ADH_ZINC,PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C	-	no_errors
BRCA1	672	genome.wustl.edu	37	17	41245985	41245985	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	41245985	41245985	T	C	SNP	BRCA1	NM_007294.3	human	genbank	58_37c	-1	reviewed	silent	c.1563	p.A521	0.567	NULL	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
BUB1	699	genome.wustl.edu	37	2	111419365	111419365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	111419365	111419365	C	T	SNP	BUB1	NM_004336.3	human	genbank	58_37c	-1	reviewed	silent	c.1011	p.A337	0.000	NULL	HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
C19orf29OS	404665	genome.wustl.edu	37	19	3614652	3614652	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	3614652	3614652	G	C	SNP	C19orf29OS	XR_078668.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
CAMTA2	23125	genome.wustl.edu	37	17	4883751	4883751	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	4883751	4883751	G	A	SNP	CAMTA2	NM_015099.3	human	genbank	58_37c	-1	validated	missense	c.866	p.S289F	1.000	NULL	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CCL23	6368	genome.wustl.edu	37	17	34340326	34340326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	34340326	34340326	G	A	SNP	CCL23	NM_005064.3	human	genbank	58_37c	-1	reviewed	missense	c.325	p.R109C	0.000	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines	-	no_errors
CECR2	27443	genome.wustl.edu	37	22	18022211	18022211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	18022211	18022211	C	T	SNP	CECR2	ENST00000400573	human	ensembl	58_37c	+1	known	silent	c.2313	p.H771	0.000	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
CHRNB4	1143	genome.wustl.edu	37	15	78921983	78921983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	15	78921983	78921983	C	T	SNP	CHRNB4	NM_000750.3	human	genbank	58_37c	-1	validated	missense	c.664	p.V222M	0.997	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
COL21A1	81578	genome.wustl.edu	37	6	55940289	55940289	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	55940289	55940289	G	T	SNP	COL21A1	NM_030820.3	human	genbank	58_37c	-1	reviewed	silent	c.1899	p.A633	0.896	HMMPfam_Collagen	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
COPE	11316	genome.wustl.edu	37	19	19030117	19030117	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	19030117	19030117	C	G	SNP	COPE	NM_007263.3	human	genbank	58_37c	-1	reviewed	missense	c.41	p.G14A	0.999	NULL	HMMPfam_Coatomer_E,superfamily_TPR-like	-	no_errors
CYP21A2	1589	genome.wustl.edu	37	6	32007849	32007849	+	Missense_Mutation	SNP	G	G	C	rs6472	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	32007849	32007849	G	C	SNP	CYP21A2	NM_000500.5	human	genbank	58_37c	+1	reviewed	missense	c.806	p.S269T	0.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DMBT1	1755	genome.wustl.edu	37	10	124390771	124390771	+	Missense_Mutation	SNP	G	G	A	rs146475455	by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	124390771	124390771	G	A	SNP	DMBT1	NM_007329.2	human	genbank	58_37c	+1	reviewed	missense	c.5933	p.R1978H	0.000	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_ZP_1	-	no_errors
DTX1	1840	genome.wustl.edu	37	12	113515277	113515277	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	113515277	113515277	C	A	SNP	DTX1	NM_004416.2	human	genbank	58_37c	+1	reviewed	missense	c.308	p.P103Q	1.000	HMMPfam_WWE	HMMSmart_RING,HMMPfam_WWE,PatternScan_ZF_RING_1,HMMSmart_WWE,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000005206	0	genome.wustl.edu	37	19	2339888	2339888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	2339888	2339888	C	T	SNP	ENSG00000005206	ENST00000452401	human	ensembl	58_37c	+1	known	missense	c.665	p.T222M	1.000	HMMSmart_SM00730,HMMPfam_Peptidase_A22B	HMMPfam_PA,HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92533189	92533189	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	92533189	92533189	T	A	SNP	FAT3	NM_001008781.2	human	genbank	58_37c	+1	validated	missense	c.7010	p.F2337Y	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FLJ32810	143872	genome.wustl.edu	37	11	100845328	100845328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	100845328	100845328	C	T	SNP	ARHGAP42	NM_152432.2	human	genbank	58_37c	+1	provisional	missense	c.1849	p.P617S	0.998	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,PatternScan_IG_MHC,superfamily_GTPase activation domain GAP,superfamily_PH domain-like	-	no_errors
GDPD5	81544	genome.wustl.edu	37	11	75160132	75160132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	75160132	75160132	C	T	SNP	GDPD5	NM_030792.6	human	genbank	58_37c	-1	validated	missense	c.604	p.V202M	0.608	NULL	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases	-	no_errors
GMEB1	10691	genome.wustl.edu	37	1	29016663	29016663	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	29016663	29016663	A	T	SNP	GMEB1	NM_006582.2	human	genbank	58_37c	+1	reviewed	missense	c.206	p.E69V	1.000	NULL	HMMPfam_SAND,HMMSmart_SM00258,superfamily_SAND domain-like	-	no_errors
GTF3C1	2975	genome.wustl.edu	37	16	27480677	27480686	+	Frame_Shift_Del	DEL	ACCACAATGC	ACCACAATGC	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	ACCACAATGC	ACCACAATGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	16	27480677	27480686	ACCACAATGC	-	DEL	GTF3C1	NM_001520.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.5009_5000	p.S1667fs	1.000:1.000:1.000:1.000:1.000:0.905:1.000:1.000:1.000:1.000	NULL	HMMPfam_B-block_TFIIIC	-	no_errors
HNRNPA1	3178	genome.wustl.edu	37	12	54678053	54678053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	54678053	54678053	G	A	SNP	HNRNPA1	NM_031157.2	human	genbank	58_37c	+1	reviewed	missense	c.1075	p.G359S	0.998	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
IDS	3423	genome.wustl.edu	37	X	148586645	148586645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	148586645	148586645	C	T	SNP	IDS	NM_000202.5	human	genbank	58_37c	-1	reviewed	missense	c.23	p.R8Q	0.001	NULL	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like	-	no_errors
LAMA3	3909	genome.wustl.edu	37	18	21534511	21534511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	18	21534511	21534511	G	A	SNP	LAMA3	NM_198129.1	human	genbank	58_37c	+1	reviewed	missense	c.9901	p.G3301S	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,PatternScan_CHAPERONINS_CPN60,superfamily_EGF/Laminin	-	no_errors
LARGE	9215	genome.wustl.edu	37	22	34157362	34157362	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	22	34157362	34157362	G	T	SNP	LARGE	NM_004737.4	human	genbank	58_37c	-1	reviewed	missense	c.102	p.F34L	1.000	NULL	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
LIN28B	389421	genome.wustl.edu	37	6	105526463	105526463	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	6	105526463	105526463	A	T	SNP	LIN28B	NM_001004317.2	human	genbank	58_37c	+1	provisional	silent	c.558	p.P186	0.338	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,superfamily_Retrovirus zinc finger-like domains	-	no_errors
LIN9	286826	genome.wustl.edu	37	1	226426717	226426717	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	226426717	226426717	C	T	SNP	LIN9	NM_173083.2	human	genbank	58_37c	-1	provisional	silent	c.1248	p.K416	0.999	NULL	HMMPfam_DIRP	-	no_errors
LOC645954	645954	genome.wustl.edu	37	10	31006008	31006008	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	31006008	31006008	C	T	SNP	LOC645954	XR_017086.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170030639	170030639	+	Missense_Mutation	SNP	C	C	T	rs144081819	byCluster;byFrequency;by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	170030639	170030639	C	T	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.10804	p.A3602T	1.000	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
LSR	51599	genome.wustl.edu	37	19	35749935	35749935	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	35749935	35749935	A	G	SNP	LSR	NM_205834.2	human	genbank	58_37c	+1	validated	missense	c.686	p.N229S	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	PatternScan_ADH_SHORT,HMMSmart_SM00409,HMMPfam_LSR,superfamily_Immunoglobulin	-	no_errors
MYPN	84665	genome.wustl.edu	37	10	69881873	69881873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	10	69881873	69881873	C	T	SNP	MYPN	NM_032578.2	human	genbank	58_37c	+1	validated	silent	c.678	p.H226	0.015	NULL	PatternScan_ER_TARGET,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NPAS2	4862	genome.wustl.edu	37	2	101541639	101541639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	101541639	101541639	C	T	SNP	NPAS2	NM_002518.3	human	genbank	58_37c	+1	reviewed	missense	c.64	p.R22W	1.000	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
OBFC2B	79035	genome.wustl.edu	37	12	56619427	56619427	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	56619427	56619427	G	-	DEL	OBFC2B	NM_024068.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.238	p.G80fs	1.000	HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins	HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins	-	no_errors
OR1D4	0	genome.wustl.edu	37	17	2966828	2966828	+	Missense_Mutation	SNP	C	C	T	rs2258425	byFrequency;bySubmitter	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	2966828	2966828	C	T	SNP	OR1D4	NM_003552.2	human	genbank	58_37c	-1	provisional	missense	c.128	p.R43Q	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR2T34	127068	genome.wustl.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs139616012	by1000genomes	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	248737734	248737734	G	A	SNP	OR2T34	NM_001001821.1	human	genbank	58_37c	-1	provisional	missense	c.325	p.H109Y	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR5AU1	390445	genome.wustl.edu	37	14	21623196	21623196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	14	21623196	21623196	G	C	SNP	OR5AU1	NM_001004731.1	human	genbank	58_37c	-1	provisional	missense	c.989	p.T330R	0.999	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PEPD	5184	genome.wustl.edu	37	19	33892709	33892709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	33892709	33892709	G	A	SNP	PEPD	NM_000285.3	human	genbank	58_37c	-1	reviewed	silent	c.885	p.N295	0.944	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_PROLINE_PEPTIDASE,HMMPfam_AMP_N,superfamily_SSF53092	-	no_errors
PJA1	64219	genome.wustl.edu	37	X	68383057	68383057	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	68383057	68383057	C	A	SNP	PJA1	NM_145119.3	human	genbank	58_37c	-1	reviewed	missense	c.25	p.V9L	0.491	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
PLEC	0	genome.wustl.edu	37	8	145007427	145007427	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	145007427	145007427	G	A	SNP	PLEC	NM_201380.2	human	genbank	58_37c	-1	reviewed	silent	c.1767	p.L589	0.983	NULL	HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
POU4F1	5457	genome.wustl.edu	37	13	79176484	79176486	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	13	79176484	79176486	TGG	-	DEL	POU4F1	NM_006237.3	human	genbank	58_37c	-1	validated	in_frame_del	c.326_324	p.H108in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
RFWD2	64326	genome.wustl.edu	37	1	176012391	176012391	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	176012391	176012391	T	G	SNP	RFWD2	NM_022457.5	human	genbank	58_37c	-1	validated	silent	c.1543	p.R515	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMSmart_SM00184,superfamily_WD40 repeat-like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_RING/U-box	-	no_errors
RFX8	0	genome.wustl.edu	37	2	102014145	102014145	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	102014145	102014145	T	A	SNP	RFX8	NM_001145664.1	human	genbank	58_37c	-1	validated	silent	c.1287	p.A429	0.000	NULL	NULL	-	no_errors
RXFP4	339403	genome.wustl.edu	37	1	155912487	155912487	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	155912487	155912487	G	T	SNP	RXFP4	NM_181885.2	human	genbank	58_37c	+1	validated	missense	c.987	p.L329F	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SCD5	79966	genome.wustl.edu	37	4	83719603	83719603	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	83719603	83719603	C	A	SNP	SCD5	NM_001037582.2	human	genbank	58_37c	-1	validated	missense	c.88	p.G30C	0.004	NULL	PatternScan_FATTY_ACID_DESATUR_1,HMMPfam_FA_desaturase	-	no_errors
SCN9A	6335	genome.wustl.edu	37	2	167159748	167159748	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	167159748	167159748	C	T	SNP	SCN9A	NM_002977.3	human	genbank	58_37c	-1	reviewed	silent	c.753	p.L251	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SERTAD3	29946	genome.wustl.edu	37	19	40947651	40947651	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	19	40947651	40947651	G	C	SNP	SERTAD3	NM_013368.3	human	genbank	58_37c	-1	reviewed	missense	c.337	p.Q113E	0.844	NULL	HMMPfam_SERTA	-	no_errors
SHPK	23729	genome.wustl.edu	37	17	3518763	3518763	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	3518763	3518763	G	C	SNP	SHPK	NM_013276.2	human	genbank	58_37c	-1	reviewed	missense	c.892	p.P298A	1.000	superfamily_Actin-like ATPase domain	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain	-	no_errors
SHROOM2	357	genome.wustl.edu	37	X	9914857	9914857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	9914857	9914857	C	T	SNP	SHROOM2	NM_001649.2	human	genbank	58_37c	+1	reviewed	silent	c.4731	p.H1577	1.000	HMMPfam_ASD2	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLITRK4	139065	genome.wustl.edu	37	X	142716453	142716453	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142716453	142716453	G	C	SNP	SLITRK4	NM_173078.3	human	genbank	58_37c	-1	reviewed	nonsense	c.2472	p.Y824*	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
SLITRK4	139065	genome.wustl.edu	37	X	142718044	142718044	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	142718044	142718044	G	A	SNP	SLITRK4	NM_173078.3	human	genbank	58_37c	-1	reviewed	missense	c.881	p.T294I	0.992	NULL	HMMPfam_LRRNT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
SSR4	6748	genome.wustl.edu	37	X	153060173	153060173	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	153060173	153060173	G	T	SNP	SSR4	NM_006280.1	human	genbank	58_37c	+1	reviewed	missense	c.31	p.A11S	1.000	HMMPfam_TRAP-delta	HMMPfam_TRAP-delta	-	no_errors
TECTA	7007	genome.wustl.edu	37	11	121008612	121008612	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	11	121008612	121008612	G	C	SNP	TECTA	NM_005422.2	human	genbank	58_37c	+1	reviewed	missense	c.3424	p.V1142L	0.410	HMMPfam_VWD,HMMSmart_SM00216	PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_NIDO,HMMSmart_SM00539,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,PatternScan_ZP_1,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
TEX11	56159	genome.wustl.edu	37	X	69749698	69749698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	X	69749698	69749698	C	T	SNP	TEX11	NM_001003811.1	human	genbank	58_37c	-1	reviewed	missense	c.2717	p.S906N	0.000	NULL	HMMPfam_SPO22,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TG	7038	genome.wustl.edu	37	8	133912567	133912567	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	8	133912567	133912567	C	T	SNP	TG	NM_003235.4	human	genbank	58_37c	+1	reviewed	missense	c.3416	p.S1139L	0.001	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,superfamily_Thyroglobulin type-1 domain	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578532	7578532	+	Missense_Mutation	SNP	A	T	T	rs28934873	byCluster	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	17	7578532	7578532	A	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.398	p.M133K	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRAF3IP1	26146	genome.wustl.edu	37	2	239264716	239264716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	239264716	239264716	G	A	SNP	TRAF3IP1	NM_015650.3	human	genbank	58_37c	+1	validated	missense	c.1684	p.E562K	1.000	HMMPfam_MIP-T3	HMMPfam_MIP-T3	-	no_errors
TROAP	10024	genome.wustl.edu	37	12	49717675	49717675	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	12	49717675	49717675	T	C	SNP	TROAP	NM_005480.3	human	genbank	58_37c	+1	validated	silent	c.192	p.D64	0.002	NULL	NULL	-	no_errors
UGT2B15	7366	genome.wustl.edu	37	4	69533861	69533861	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	69533861	69533861	C	T	SNP	UGT2B15	NM_001076.2	human	genbank	58_37c	-1	validated	nonsense	c.770	p.W257*	1.000	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215848217	215848217	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	1	215848217	215848217	G	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.13036	p.P4346T	0.002	HMMPfam_fn3,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
VIT	5212	genome.wustl.edu	37	2	37010495	37010497	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	2	37010495	37010497	AAG	-	DEL	VIT	NM_053276.3	human	genbank	58_37c	+1	validated	in_frame_del	c.860_862	p.E289in_frame_del	1.000:0.995:1.000	NULL	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_LCCL,HMMSmart_LCCL,superfamily_LCCL,superfamily_SSF53300	-	no_errors
YIPF7	285525	genome.wustl.edu	37	4	44626655	44626655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	4	44626655	44626655	C	T	SNP	YIPF7	NM_182592.2	human	genbank	58_37c	-1	validated	missense	c.643	p.V215I	1.000	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors
ZNF777	27153	genome.wustl.edu	37	7	149128876	149128876	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A1-A0SK-01A-12D-A099-09	TCGA-A1-A0SK-10A-03D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d1b43161-cbc1-4bf6-b8bb-a72a2e5e1150	2a5384f3-fec7-4265-b104-987f0718574b	7	149128876	149128876	C	T	SNP	ZNF777	NM_015694.2	human	genbank	58_37c	-1	validated	silent	c.2487	p.T829	1.000	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
