Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC8	6833	genome.wustl.edu	37	11	17428939	17428939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	17428939	17428939	G	A	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	missense	c.2882	p.S961L	1.000	NULL	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C11orf66	220004	genome.wustl.edu	37	11	61258004	61258004	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	61258004	61258004	A	C	SNP	C11orf66	NM_145017.2	human	genbank	58_37c	+1	validated	missense	c.1240	p.N414H	0.000	NULL	NULL	-	no_errors
CILP	8483	genome.wustl.edu	37	15	65491181	65491181	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	15	65491181	65491181	G	T	SNP	CILP	NM_003613.3	human	genbank	58_37c	-1	reviewed	missense	c.1443	p.S481R	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin	-	no_errors
CYP7B1	9420	genome.wustl.edu	37	8	65527680	65527680	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	8	65527680	65527680	G	A	SNP	CYP7B1	NM_004820.3	human	genbank	58_37c	-1	reviewed	silent	c.960	p.D320	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450	-	no_errors
DCAF4L1	285429	genome.wustl.edu	37	4	41984183	41984183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	41984183	41984183	G	A	SNP	DCAF4L1	NM_001029955.3	human	genbank	58_37c	+1	validated	missense	c.374	p.R125Q	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like	-	no_errors
DGKG	1608	genome.wustl.edu	37	3	185986591	185986591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	3	185986591	185986591	G	A	SNP	DGKG	NM_001346.2	human	genbank	58_37c	-1	reviewed	missense	c.1115	p.T372M	1.000	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
EHF	26298	genome.wustl.edu	37	11	34664214	34664214	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	34664214	34664214	C	G	SNP	EHF	NM_012153.4	human	genbank	58_37c	+1	validated	missense	c.37	p.P13A	1.000	superfamily_SAM/Pointed domain	"HMMPfam_Ets,HMMSmart_SM00413,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FMR1NB	158521	genome.wustl.edu	37	X	147106385	147106385	+	Silent	SNP	C	C	T	rs150677301	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	147106385	147106385	C	T	SNP	FMR1NB	NM_152578.2	human	genbank	58_37c	+1	validated	silent	c.633	p.S211	0.044	NULL	NULL	-	no_errors
FREM1	158326	genome.wustl.edu	37	9	14851595	14851595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	9	14851595	14851595	G	A	SNP	FREM1	NM_144966.5	human	genbank	58_37c	-1	reviewed	missense	c.839	p.A280V	0.357	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Cadherin-like,superfamily_C-type lectin-like,PatternScan_SPASE_I_1	-	no_errors
GLB1L3	112937	genome.wustl.edu	37	11	134179562	134179562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	134179562	134179562	C	T	SNP	GLB1L3	NM_001080407.2	human	genbank	58_37c	+1	validated	missense	c.1004	p.S335F	1.000	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	-	no_errors
GNB3	2784	genome.wustl.edu	37	12	6952161	6952161	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	6952161	6952161	C	T	SNP	GNB3	NM_002075.2	human	genbank	58_37c	+1	reviewed	nonsense	c.124	p.R42*	1.000	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
IRF2BP2	359948	genome.wustl.edu	37	1	234743301	234743302	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	234743301	234743302	-	A	INS	IRF2BP2	NM_182972.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1346_1345	p.S449fs	1.000:1.000	NULL	NULL	-	no_errors
KDM4C	23081	genome.wustl.edu	37	9	6793072	6793072	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	9	6793072	6793072	G	A	SNP	KDM4C	NM_015061.3	human	genbank	58_37c	+1	reviewed	silent	c.84	p.E28	0.431	HMMPfam_JmjN,HMMSmart_SM00545	HMMSmart_SM00249,HMMSmart_SM00333,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Tudor/PWWP/MBT	-	no_errors
KIAA1486	57624	genome.wustl.edu	37	2	226273793	226273793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	226273793	226273793	G	A	SNP	KIAA1486	NM_020864.1	human	genbank	58_37c	+1	validated	missense	c.197	p.R66Q	1.000	NULL	NULL	-	no_errors
KIAA2022	340533	genome.wustl.edu	37	X	73963301	73963301	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	73963301	73963301	A	-	DEL	KIAA2022	NM_001008537.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1091	p.F364fs	1.000	NULL	NULL	-	no_errors
LDB2	9079	genome.wustl.edu	37	4	16504298	16504298	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	16504298	16504298	A	T	SNP	LDB2	NM_001290.3	human	genbank	58_37c	-1	validated	missense	c.1090	p.S364T	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC100288788	0	genome.wustl.edu	37	X	65176943	65176943	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	65176943	65176943	T	C	SNP	LOC100288788	XM_002343822.1	human	genbank	58_37c	-1	model	silent	c.96	p.G32	0.998	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
LOC645490	645490	genome.wustl.edu	37	11	20596552	20596552	+	Missense_Mutation	SNP	T	T	A	rs75407164	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	20596552	20596552	T	A	SNP	LOC645490	XM_928515.4	human	genbank	58_37c	+1	model	missense	c.1014	p.D338E	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
LOC729020	729020	genome.wustl.edu	37	10	105006118	105006118	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	10	105006118	105006118	G	T	SNP	LOC729020	NM_001143909.1	human	genbank	58_37c	+1	provisional	missense	c.365	p.G122V	0.998	HMMPfam_Ribul_P_3_epim,superfamily_RibP_bind_barrel	HMMPfam_Ribul_P_3_epim,PatternScan_RIBUL_P_3_EPIMER_1,superfamily_RibP_bind_barrel	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17083652	17083652	+	RNA	SNP	C	C	T	rs113710576	byCluster	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	17083652	17083652	C	T	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.765	-	-	-	pseudogene
MST1P9	0	genome.wustl.edu	37	1	17084730	17084730	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	1	17084730	17084730	G	-	DEL	MST1P9	ENST00000389184	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-17084730	NULL	1.000	-	-	-	no_coding_region:pseudogene
NRBP1	29959	genome.wustl.edu	37	2	27656951	27656951	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	27656951	27656951	G	-	DEL	NRBP1	NM_013392.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.429	p.A144fs	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
OR56A1	120796	genome.wustl.edu	37	11	6048841	6048841	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	6048841	6048841	G	A	SNP	OR56A1	NM_001001917.2	human	genbank	58_37c	-1	validated	missense	c.94	p.H32Y	0.930	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PARP12	64761	genome.wustl.edu	37	7	139726015	139726015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	139726015	139726015	C	G	SNP	PARP12	NM_022750.2	human	genbank	58_37c	-1	provisional	missense	c.1762	p.G588R	1.000	HMMPfam_PARP,superfamily_ADP-ribosylation	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMPfam_PARP,superfamily_ADP-ribosylation,superfamily_CCCH zinc finger	-	no_errors
PGA5	5222	genome.wustl.edu	37	11	61017206	61017206	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	11	61017206	61017206	C	G	SNP	PGA5	NM_014224.2	human	genbank	58_37c	+1	validated	missense	c.839	p.T280S	1.000	HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic	HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide	-	no_errors
REV1	51455	genome.wustl.edu	37	2	100019354	100019354	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	2	100019354	100019354	G	A	SNP	REV1	NM_016316.2	human	genbank	58_37c	-1	reviewed	silent	c.3382	p.L1128	0.966	NULL	HMMPfam_IMS,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases	-	no_errors
RSBN1L	222194	genome.wustl.edu	37	7	77379331	77379331	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	77379331	77379331	T	G	SNP	RSBN1L	NM_198467.2	human	genbank	58_37c	+1	validated	missense	c.1294	p.L432V	0.992	NULL	NULL	-	no_errors
SNX25	83891	genome.wustl.edu	37	4	186274637	186274637	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	186274637	186274637	A	T	SNP	SNX25	NM_031953.2	human	genbank	58_37c	+1	validated	splice_site	c.1975-2	e14-2	1.000	-	-	-	no_errors
SOCS7	30837	genome.wustl.edu	37	17	36522192	36522192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	17	36522192	36522192	C	T	SNP	SOCS7	NM_014598.1	human	genbank	58_37c	+1	validated	silent	c.1083	p.P361	0.997	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_SH2 domain	-	no_errors
SPANXC	64663	genome.wustl.edu	37	X	140335783	140335783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	X	140335783	140335783	C	T	SNP	SPANXC	NM_022661.2	human	genbank	58_37c	-1	reviewed	missense	c.161	p.R54H	0.001	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors
SPNS1	83985	genome.wustl.edu	37	16	28986519	28986519	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	28986519	28986519	C	G	SNP	SPNS1	NM_001142448.1	human	genbank	58_37c	+1	validated	missense	c.47	p.P16R	0.998	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SRCAP	10847	genome.wustl.edu	37	16	30722123	30722123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	16	30722123	30722123	C	T	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	missense	c.1183	p.H395Y	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM233	0	genome.wustl.edu	37	12	120031840	120031840	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	120031840	120031840	G	A	SNP	TMEM233	NM_001136534.1	human	genbank	58_37c	+1	provisional	splice_site	c.186+1	e1+1	1.000	-	-	-	no_errors
TMPRSS11B	132724	genome.wustl.edu	37	4	69094493	69094493	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	69094493	69094493	A	T	SNP	TMPRSS11B	NM_182502.3	human	genbank	58_37c	-1	validated	silent	c.1056	p.A352	0.998	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_SEA,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,superfamily_SEA domain	-	no_errors
UPLP	0	genome.wustl.edu	37	7	102279621	102279621	+	Missense_Mutation	SNP	C	C	T	rs56365279	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	7	102279621	102279621	C	T	SNP	UPK3BL	NM_001114403.1	human	genbank	58_37c	-1	provisional	missense	c.511	p.E171K	0.088	NULL	NULL	-	no_errors
WIF1	11197	genome.wustl.edu	37	12	65460458	65460458	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	12	65460458	65460458	G	C	SNP	WIF1	NM_007191.4	human	genbank	58_37c	-1	reviewed	missense	c.693	p.I231M	1.000	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_WIF,HMMSmart_WIF,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2	-	no_errors
YIPF7	285525	genome.wustl.edu	37	4	44626756	44626756	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	4	44626756	44626756	A	T	SNP	YIPF7	NM_182592.2	human	genbank	58_37c	-1	validated	missense	c.542	p.I181N	0.999	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors
ZNF486	90649	genome.wustl.edu	37	19	20307906	20307906	+	Silent	SNP	G	G	T	rs112152275	unknown	TCGA-A2-A0CU-01A-12W-A050-09	TCGA-A2-A0CU-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a9aa68af-f5fe-4ac0-987f-8af49b85c231	f41d6d14-ad4f-49d5-a4fb-6bdd1b6dbddc	19	20307906	20307906	G	T	SNP	ZNF486	NM_052852.2	human	genbank	58_37c	+1	provisional	silent	c.387	p.V129	0.982	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
