Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AASS	10157	genome.wustl.edu	37	7	121756793	121756793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	121756793	121756793	G	A	SNP	AASS	NM_005763.3	human	genbank	58_37c	-1	reviewed	missense	c.788	p.T263M	1.000	HMMPfam_AlaDh_PNT_C	HMMPfam_Saccharop_dh,HMMPfam_AlaDh_PNT_C,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	-	no_errors
ANKZF1	55139	genome.wustl.edu	37	2	220100548	220100548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	220100548	220100548	G	A	SNP	ANKZF1	NM_001042410.1	human	genbank	58_37c	+1	validated	missense	c.1922	p.R641H	0.015	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ANP32E	81611	genome.wustl.edu	37	1	150201406	150201406	+	Silent	SNP	C	C	T	rs151007873	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	150201406	150201406	C	T	SNP	ANP32E	NM_030920.3	human	genbank	58_37c	-1	validated	silent	c.492	p.E164	0.876	NULL	HMMPfam_LRR_1,superfamily_L domain-like	-	no_errors
ARMC7	79637	genome.wustl.edu	37	17	73106586	73106586	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	73106586	73106586	C	T	SNP	ARMC7	NM_024585.2	human	genbank	58_37c	+1	provisional	silent	c.120	p.L40	0.996	superfamily_ARM-type_fold	HMMPfam_Arm,superfamily_ARM-type_fold	-	no_errors
FAM47B	170062	genome.wustl.edu	37	X	34961961	34961961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	34961961	34961961	C	G	SNP	FAM47B	NM_152631.2	human	genbank	58_37c	+1	validated	missense	c.1013	p.T338S	0.712	NULL	NULL	-	no_errors
GOLGA6L5	374650	genome.wustl.edu	37	15	85055872	85055872	+	RNA	SNP	C	C	T	rs62029638	byFrequency;by1000genomes	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	15	85055872	85055872	C	T	SNP	GOLGA6L5	NR_003246.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	pseudogene
IL2RG	3561	genome.wustl.edu	37	X	70330750	70330750	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	70330750	70330750	T	A	SNP	IL2RG	NM_000206.2	human	genbank	58_37c	-1	reviewed	missense	c.266	p.Y89F	0.426	superfamily_FN_III-like	PatternScan_HEMATOPO_REC_S_F1,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
KIAA0562	9731	genome.wustl.edu	37	1	3750452	3750452	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	3750452	3750452	G	A	SNP	KIAA0562	NM_014704.3	human	genbank	58_37c	-1	validated	missense	c.1633	p.R545C	0.945	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
LCT	3938	genome.wustl.edu	37	2	136561583	136561583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	136561583	136561583	C	T	SNP	LCT	NM_002299.2	human	genbank	58_37c	-1	reviewed	missense	c.4580	p.G1527E	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LRRC7	57554	genome.wustl.edu	37	1	70505012	70505012	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	70505012	70505012	G	T	SNP	LRRC7	NM_020794.2	human	genbank	58_37c	+1	validated	missense	c.3391	p.V1131F	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151859457	151859457	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	7	151859457	151859457	T	-	DEL	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.11205	p.K3735fs	0.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MSX2	4488	genome.wustl.edu	37	5	174156285	174156285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	5	174156285	174156285	C	T	SNP	MSX2	NM_002449.4	human	genbank	58_37c	+1	reviewed	missense	c.503	p.S168F	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
MTUS2	0	genome.wustl.edu	37	13	29933490	29933490	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	13	29933490	29933490	G	A	SNP	MTUS2	NM_001033602.2	human	genbank	58_37c	+1	validated	silent	c.3027	p.L1009	0.998	NULL	NULL	-	no_errors
MYH8	4626	genome.wustl.edu	37	17	10318470	10318470	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	10318470	10318470	A	G	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	silent	c.768	p.G256	0.725	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYO7A	4647	genome.wustl.edu	37	11	76900501	76900501	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	11	76900501	76900501	G	A	SNP	MYO7A	NM_000260.3	human	genbank	58_37c	+1	reviewed	missense	c.3616	p.E1206K	1.000	HMMPfam_MyTH4,HMMSmart_SM00139	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_FERM_N,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NLRC4	58484	genome.wustl.edu	37	2	32475353	32475353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	32475353	32475353	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	58_37c	-1	known	missense	c.1580	p.P527L	0.130	NULL	HMMPfam_CARD,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OLFM4	10562	genome.wustl.edu	37	13	53603067	53603067	+	Silent	SNP	C	C	T	rs140749392	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	13	53603067	53603067	C	T	SNP	OLFM4	NM_006418.3	human	genbank	58_37c	+1	reviewed	silent	c.96	p.P32	0.000	NULL	HMMPfam_OLF,HMMSmart_OLF	-	no_errors
OPRK1	4986	genome.wustl.edu	37	8	54142147	54142147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	8	54142147	54142147	C	T	SNP	OPRK1	NM_000912.3	human	genbank	58_37c	-1	validated	missense	c.853	p.V285I	0.058	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PHEX	5251	genome.wustl.edu	37	X	22231059	22231059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	X	22231059	22231059	G	A	SNP	PHEX	NM_000444.4	human	genbank	58_37c	+1	reviewed	missense	c.1684	p.G562R	1.000	HMMPfam_Peptidase_M13,superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_SSF55486	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	A	A	A	G	A	A		Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA		1	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCXD2	257068	genome.wustl.edu	37	3	111439672	111439672	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	111439672	111439672	G	A	SNP	PLCXD2	ENST00000312791	human	ensembl	58_37c	+1	known	silent	c.969	p.A323	0.122	superfamily_PLC-like phosphodiesterases	HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases	-	no_errors
POFUT2	23275	genome.wustl.edu	37	21	46705505	46705505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	21	46705505	46705505	C	T	SNP	POFUT2	ENST00000476653	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-46705505	NULL	0.000	-	-	-	no_coding_region
PSMD1	5707	genome.wustl.edu	37	2	231937097	231937098	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	231937097	231937098	-	A	INS	PSMD1	NM_002807.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.849_850	p.T283fs	0.998:1.000	NULL	HMMPfam_PC_rep,superfamily_ARM repeat	-	no_errors
RAB24	53917	genome.wustl.edu	37	5	176728751	176728751	+	Missense_Mutation	SNP	T	T	C	rs146377924	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	5	176728751	176728751	T	C	SNP	RAB24	NM_001031677.2	human	genbank	58_37c	-1	validated	missense	c.605	p.H202R	1.000	NULL	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RASA2	5922	genome.wustl.edu	37	3	141292064	141292064	+	Splice_Site	SNP	G	G	T	rs182402423	by1000genomes	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	3	141292064	141292064	G	T	SNP	RASA2	NM_006506.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1359+1	e13+1	1.000	-	-	-	no_errors
SF4	57794	genome.wustl.edu	37	19	19387471	19387471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	19	19387471	19387471	G	A	SNP	SF4	NM_172231.2	human	genbank	58_37c	-1	validated	missense	c.1924	p.R642W	0.689	NULL	HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_G-patch,HMMSmart_SM00443,superfamily_Surp module (SWAP domain Pfam 01805)	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232607134	232607134	+	Silent	SNP	G	G	C	rs141392187	by1000genomes	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	232607134	232607134	G	C	SNP	SIPA1L2	NM_020808.3	human	genbank	58_37c	-1	validated	silent	c.2226	p.T742	0.001	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
TBX4	9496	genome.wustl.edu	37	17	59560293	59560293	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	17	59560293	59560293	C	T	SNP	TBX4	NM_018488.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1054	p.R352*	1.000	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TMEM132B	114795	genome.wustl.edu	37	12	125834884	125834884	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	12	125834884	125834884	T	A	SNP	TMEM132B	NM_052907.2	human	genbank	58_37c	+1	provisional	silent	c.939	p.T313	0.977	NULL	NULL	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179456460	179456460	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	2	179456460	179456460	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.52376	p.T17459N	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
ZBTB25	7597	genome.wustl.edu	37	14	64954287	64954287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	14	64954287	64954287	G	A	SNP	ZBTB25	NM_006977.2	human	genbank	58_37c	-1	validated	missense	c.662	p.P221L	0.443	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZP4	57829	genome.wustl.edu	37	1	238050144	238050144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EN-01A-13D-A099-09	TCGA-A2-A0EN-10A-01D-A099-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	12362ad7-6866-4e7a-9ec6-8a0a68df8896	ad478c68-a18b-4529-ad7a-86039e6da6b1	1	238050144	238050144	C	T	SNP	ZP4	NM_021186.2	human	genbank	58_37c	-1	reviewed	missense	c.766	p.E256K	0.993	HMMPfam_Zona_pellucida,HMMSmart_SM00241	HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_P_TREFOIL,PatternScan_ZP_1	-	no_errors
