Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CDH1	999	genome.wustl.edu	37	16	68849628	68849628	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	16	68849628	68849628	C	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1531	p.Q511*	0.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889985	16889985	+	RNA	SNP	T	T	C	rs6603880	byCluster;byFrequency;by2Hit2Allele	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	16889985	16889985	T	C	SNP	NBPF1	ENST00000392963	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-16889985	NULL	0.040	-	-	-	no_coding_region
EPB41L4A	64097	genome.wustl.edu	37	5	111506043	111506043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	5	111506043	111506043	C	T	SNP	EPB41L4A	NM_022140.3	human	genbank	58_37c	-1	validated	missense	c.1694	p.G565E	0.993	NULL	HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
ESPL1	9700	genome.wustl.edu	37	12	53682322	53682323	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	12	53682322	53682323	GT	-	DEL	ESPL1	NM_012291.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.4547_4548	p.G1517fs	0.126:0.120	NULL	HMMPfam_Peptidase_C50	-	no_errors
FTSJ3	117246	genome.wustl.edu	37	17	61898202	61898202	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	17	61898202	61898202	T	C	SNP	FTSJ3	NM_017647.3	human	genbank	58_37c	-1	reviewed	missense	c.2069	p.N690S	1.000	HMMPfam_Spb1_C	HMMPfam_FtsJ,HMMPfam_Spb1_C,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
FXYD5	53827	genome.wustl.edu	37	19	35649292	35649292	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	19	35649292	35649292	G	A	SNP	FXYD5	NM_014164.5	human	genbank	58_37c	+1	reviewed	nonsense	c.188	p.W63*	0.000	NULL	HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD	-	no_errors
GPR56	9289	genome.wustl.edu	37	16	57691314	57691314	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	16	57691314	57691314	C	A	SNP	GPR56	NM_001145771.1	human	genbank	58_37c	+1	reviewed	missense	c.1197	p.H399Q	1.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_AMP_BINDING	-	no_errors
GRM1	2911	genome.wustl.edu	37	6	146720226	146720226	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	6	146720226	146720226	G	A	SNP	GRM1	NM_000838.3	human	genbank	58_37c	+1	reviewed	missense	c.2051	p.R684H	1.000	HMMPfam_7tm_3	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822	-	no_errors
HK1	3098	genome.wustl.edu	37	10	71154851	71154851	+	Nonsense_Mutation	SNP	C	C	T	rs113021525	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	10	71154851	71154851	C	T	SNP	HK1	NM_033497.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2377	p.Q793*	1.000	HMMPfam_Hexokinase_2,superfamily_SSF53067	HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_SSF53067	-	no_errors
KIAA2013	90231	genome.wustl.edu	37	1	11985345	11985345	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	11985345	11985345	T	-	DEL	KIAA2013	NM_138346.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.950	p.K317fs	1.000	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
KRTAP3-2	83897	genome.wustl.edu	37	17	39155871	39155871	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	17	39155871	39155871	T	A	SNP	KRTAP3-2	NM_031959.2	human	genbank	58_37c	-1	reviewed	missense	c.235	p.T79S	0.942	HMMPfam_Keratin_matx	HMMPfam_Keratin_matx	-	no_errors
LOC221710	221710	genome.wustl.edu	37	6	11094562	11094562	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	6	11094562	11094562	G	-	DEL	LOC221710	NM_001135575.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.16	p.L7fs	0.996	NULL	NULL	-	no_errors
ONECUT2	9480	genome.wustl.edu	37	18	55103477	55103479	+	In_Frame_Del	DEL	CAC	CAC	-	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	CAC	CAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	18	55103477	55103479	CAC	-	DEL	ONECUT2	NM_004852.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.529_531	p.H180in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIKFYVE	200576	genome.wustl.edu	37	2	209212650	209212650	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	2	209212650	209212650	C	T	SNP	PIKFYVE	NM_015040.3	human	genbank	58_37c	+1	reviewed	silent	c.5277	p.S1759	1.000	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_DEP,HMMSmart_SM00049,HMMPfam_Cpn60_TCP1,HMMPfam_PIP5K,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00330,superfamily_""Winged helix"" DNA-binding domain,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like,superfamily_SAICAR synthase-like"	-	no_errors
PLEKHA4	57664	genome.wustl.edu	37	19	49363612	49363612	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	19	49363612	49363612	G	A	SNP	PLEKHA4	NM_020904.2	human	genbank	58_37c	-1	validated	silent	c.471	p.D157	0.157	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PRDM16	63976	genome.wustl.edu	37	1	3301795	3301795	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	3301795	3301795	G	A	SNP	PRDM16	NM_022114.3	human	genbank	58_37c	+1	reviewed	missense	c.518	p.R173H	0.991	HMMSmart_SM00317,superfamily_SET domain	HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain	-	no_errors
PRND	23627	genome.wustl.edu	37	20	4705447	4705447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	20	4705447	4705447	C	A	SNP	PRND	NM_012409.2	human	genbank	58_37c	+1	reviewed	missense	c.250	p.Q84K	1.000	HMMPfam_Prion,superfamily_Prion-like	HMMPfam_Prion,superfamily_Prion-like	-	no_errors
PWP2	5822	genome.wustl.edu	37	21	45528869	45528869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	21	45528869	45528869	C	T	SNP	PWP2	NM_005049.2	human	genbank	58_37c	+1	validated	missense	c.23	p.S8L	0.995	NULL	HMMSmart_WD40,superfamily_Peptidase_S9A_N,HMMPfam_PWP2,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
RNF19A	25897	genome.wustl.edu	37	8	101300149	101300149	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	8	101300149	101300149	T	G	SNP	RNF19A	NM_015435.3	human	genbank	58_37c	-1	reviewed	missense	c.254	p.N85T	1.000	NULL	HMMSmart_SM00184,HMMPfam_IBR,HMMSmart_SM00647,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SHE	126669	genome.wustl.edu	37	1	154461722	154461722	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	154461722	154461722	G	A	SNP	SHE	NM_001010846.2	human	genbank	58_37c	-1	validated	missense	c.829	p.R277W	0.000	NULL	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550	-	no_errors
SNX3	8724	genome.wustl.edu	37	6	108581992	108581992	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	6	108581992	108581992	C	A	SNP	SNX3	NM_003795.4	human	genbank	58_37c	-1	reviewed	missense	c.134	p.R45L	1.000	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain	-	no_errors
TRIM11	81559	genome.wustl.edu	37	1	228584379	228584380	+	Frame_Shift_Ins	INS	-	-	AC	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	1	228584379	228584380	-	AC	INS	TRIM11	ENST00000366699	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1128_1127	p.T377fs	0.080:0.073	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
WHSC1	7468	genome.wustl.edu	37	4	1954980	1954981	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A0EX-01A-21W-A050-09	TCGA-A2-A0EX-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9308f50c-1320-4c45-acc7-38f43b6f9a36	add72fe8-59ed-4a39-a37c-4f463a978acf	4	1954980	1954981	-	G	INS	WHSC1	ENST00000350915	human	ensembl	58_37c	+1	known	frame_shift_ins	c.111_112	p.S38fs	0.000:0.001	NULL	HMMPfam_PWWP,HMMSmart_PWWP,HMMPfam_SET,HMMSmart_SET,HMMSmart_RING,HMMSmart_PHD,HMMSmart_PostSET,HMMSmart_AWS,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF63748,superfamily_SSF82199	-	no_errors
