Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABP1	26	genome.wustl.edu	37	7	150554560	150554560	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	7	150554560	150554560	G	T	SNP	ABP1	NM_001091.2	human	genbank	58_37c	+1	reviewed	silent	c.1002	p.L334	0.994	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain	PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region	-	no_errors
ANGPT1	284	genome.wustl.edu	37	8	108297075	108297075	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	108297075	108297075	C	A	SNP	ANGPT1	NM_001146.3	human	genbank	58_37c	-1	reviewed	missense	c.1040	p.G347V	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ANKRD32	84250	genome.wustl.edu	37	5	94027917	94027917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	94027917	94027917	C	T	SNP	ANKRD32	NM_032290.3	human	genbank	58_37c	+1	validated	missense	c.2651	p.S884L	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
C4orf29	80167	genome.wustl.edu	37	4	128951784	128951784	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	4	128951784	128951784	G	C	SNP	C4orf29	NM_001039717.1	human	genbank	58_37c	+1	predicted	missense	c.1198	p.G400R	1.000	HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases	HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases	-	no_errors
CKAP2L	150468	genome.wustl.edu	37	2	113514535	113514535	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	2	113514535	113514535	G	T	SNP	CKAP2L	NM_152515.3	human	genbank	58_37c	-1	validated	missense	c.413	p.P138H	0.017	NULL	NULL	-	no_errors
ENSG00000245358	0	genome.wustl.edu	37	5	114515834	114515834	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	5	114515834	114515834	C	A	SNP	ENSG00000245358	ENST00000502182	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors
ENSG00000245537	0	genome.wustl.edu	37	20	56285577	56285577	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	20	56285577	56285577	G	A	SNP	PMEPA1	NM_199169.1	human	genbank	58_37c	-1	validated	5_prime_untranslated_region	c.-58	NULL	0.007	-	-	-	no_errors
ENSG00000246964	0	genome.wustl.edu	37	17	39805936	39805937	+	RNA	INS	-	-	CA	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	17	39805936	39805937	-	CA	INS	KRT16	NM_005557.3	human	genbank	58_37c	-1	reviewed	5_prime_flanking_region	c.-36996	NULL	0.003:0.008	-	-	-	no_errors
FAAH	2166	genome.wustl.edu	37	1	46872015	46872015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	46872015	46872015	T	C	SNP	FAAH	NM_001441.2	human	genbank	58_37c	+1	reviewed	missense	c.926	p.V309A	1.000	HMMPfam_Amidase,superfamily_Amidase_sig_enz	HMMPfam_Amidase,superfamily_Amidase_sig_enz,PatternScan_AMIDASES	-	no_errors
FGF13	2258	genome.wustl.edu	37	X	137793117	137793117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	137793117	137793117	G	T	SNP	FGF13	NM_004114.3	human	genbank	58_37c	-1	reviewed	missense	c.49	p.R17S	1.000	NULL	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine	-	no_errors
GREM1	26585	genome.wustl.edu	37	15	33023223	33023223	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	33023223	33023223	G	C	SNP	GREM1	NM_013372.5	human	genbank	58_37c	+1	reviewed	missense	c.332	p.R111P	1.000	HMMPfam_DAN,HMMSmart_SM00041	HMMPfam_DAN,HMMSmart_SM00041	-	no_errors
HLA-DRB5	3127	genome.wustl.edu	37	6	32487229	32487229	+	Silent	SNP	C	C	T	rs148633289	by1000genomes	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	6	32487229	32487229	C	T	SNP	HLA-DRB5	NM_002125.3	human	genbank	58_37c	-1	reviewed	silent	c.570	p.L190	0.765	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
MACROD1	28992	genome.wustl.edu	37	11	63767227	63767227	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	11	63767227	63767227	G	A	SNP	MACROD1	NM_014067.3	human	genbank	58_37c	-1	validated	missense	c.673	p.H225Y	1.000	HMMPfam_Macro,HMMSmart_A1pp,superfamily_SSF52949	HMMPfam_Macro,HMMSmart_A1pp,superfamily_SSF52949	-	no_errors
MATN2	4147	genome.wustl.edu	37	8	98900392	98900392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	8	98900392	98900392	G	A	SNP	MATN2	NM_002380.3	human	genbank	58_37c	+1	reviewed	missense	c.64	p.E22K	0.387	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
MN1	4330	genome.wustl.edu	37	22	28195033	28195033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	28195033	28195033	G	A	SNP	MN1	NM_002430.2	human	genbank	58_37c	-1	reviewed	missense	c.1499	p.P500L	1.000	NULL	NULL	-	no_errors
MYO18B	84700	genome.wustl.edu	37	22	26291174	26291174	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	26291174	26291174	T	A	SNP	MYO18B	NM_032608.5	human	genbank	58_37c	+1	reviewed	missense	c.4595	p.L1532H	0.993	NULL	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYOM3	127294	genome.wustl.edu	37	1	24409111	24409111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	1	24409111	24409111	G	A	SNP	MYOM3	NM_152372.3	human	genbank	58_37c	-1	validated	silent	c.2064	p.T688	0.020	superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Immunoglobulin	-	no_errors
NCOR1	9611	genome.wustl.edu	37	17	15984026	15984027	+	Frame_Shift_Ins	INS	-	-	AGGC	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	17	15984026	15984027	-	AGGC	INS	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3193_3192	p.Y1064fs	0.999:0.529	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NKAP	79576	genome.wustl.edu	37	X	119077497	119077497	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	X	119077497	119077497	C	T	SNP	NKAP	NM_024528.3	human	genbank	58_37c	-1	reviewed	silent	c.72	p.S24	0.001	NULL	HMMPfam_DUF926	-	no_errors
OR4F6	390648	genome.wustl.edu	37	15	102346617	102346617	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	15	102346617	102346617	G	T	SNP	OR4F6	NM_001005326.1	human	genbank	58_37c	+1	provisional	missense	c.695	p.G232V	0.002	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLCD1	5333	genome.wustl.edu	37	3	38049030	38049030	+	RNA	DEL	G	G	-	rs57208122	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	38049030	38049030	G	-	DEL	PLCD1	NR_024071.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
PPARG	5468	genome.wustl.edu	37	3	12447485	12447485	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	3	12447485	12447485	C	G	SNP	PPARG	NM_015869.4	human	genbank	58_37c	+1	reviewed	missense	c.724	p.L242V	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
TNRC6B	23112	genome.wustl.edu	37	22	40661511	40661511	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	22	40661511	40661511	G	T	SNP	TNRC6B	NM_015088.2	human	genbank	58_37c	+1	validated	missense	c.1277	p.G426V	1.000	NULL	HMMPfam_Ago_hook,superfamily_SSF54928	-	no_errors
ZNF90	7643	genome.wustl.edu	37	19	20228851	20228855	+	Frame_Shift_Del	DEL	ATAAG	ATAAG	-	novel	unknown	TCGA-A2-A0YC-01A-11D-A117-09	TCGA-A2-A0YC-10A-01D-A10G-09	ATAAG	ATAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4cccf7dc-7c53-409f-a6b1-f86e0f07250b	57b5183f-1ef3-4f14-981e-2ecf416c387f	19	20228851	20228855	ATAAG	-	DEL	ZNF90	NM_007138.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.488_492	p.I165fs	0.010:0.012:0.000:0.000:0.002	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
