Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ENSG00000198786	0	genome.wustl.edu	37	MT	13412	13412	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	MT	13412	13412	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1076	p.M359T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
EPPK1	0	genome.wustl.edu	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	8	144940290	144940290	C	G	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	missense	c.7132	p.D2378H	0.999	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
ESPNP	0	genome.wustl.edu	37	1	17029274	17029274	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	1	17029274	17029274	C	T	SNP	ESPNP	NR_026567.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.312	-	-	-	pseudogene
HLA-A	0	genome.wustl.edu	37	6	29910622	29910622	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	6	29910622	29910622	C	T	SNP	HLA-A	NM_002116.6	human	genbank	58_37c	+1	reviewed	silent	c.162	p.D54	1.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
KLC3	0	genome.wustl.edu	37	19	45849975	45849975	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	19	45849975	45849975	G	T	SNP	KLC3	NM_177417.2	human	genbank	58_37c	+1	reviewed	missense	c.432	p.K144N	1.000	HMMPfam_Rab5-bind,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_Rab5-bind,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
PM20D1	0	genome.wustl.edu	37	1	205819079	205819079	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	1	205819079	205819079	G	C	SNP	PM20D1	NM_152491.4	human	genbank	58_37c	-1	validated	missense	c.122	p.S41C	0.373	NULL	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases	-	no_errors
R3HDML	0	genome.wustl.edu	37	20	42965985	42965985	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1G6-01A-11D-A13L-09	TCGA-A2-A1G6-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c012bce9-de13-4e32-a29e-8ab64e16ea96	af61b79f-695b-4de6-a0cc-ef58346f5170	20	42965985	42965985	T	A	SNP	R3HDML	NM_178491.2	human	genbank	58_37c	+1	provisional	missense	c.188	p.M63K	1.000	HMMSmart_SCP,superfamily_SCP-like_extracellular	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular,PatternScan_CRISP_1,PatternScan_CRISP_2	-	no_errors
