Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA13	154664	genome.wustl.edu	37	7	48315435	48315435	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	7	48315435	48315435	C	G	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	missense	c.6172	p.L2058V	0.001	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD17	26057	genome.wustl.edu	37	4	74124127	74124127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	74124127	74124127	C	T	SNP	ANKRD17	NM_032217.3	human	genbank	58_37c	-1	reviewed	missense	c.259	p.E87K	1.000	NULL	HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
ARHGDIB	397	genome.wustl.edu	37	12	15095600	15095600	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	15095600	15095600	C	A	SNP	ARHGDIB	NM_001175.4	human	genbank	58_37c	-1	validated	missense	c.462	p.E154D	1.000	HMMPfam_Rho_GDI,superfamily_E set domains	HMMPfam_Rho_GDI,superfamily_E set domains	-	no_errors
ARHGEF12	23365	genome.wustl.edu	37	11	120352172	120352172	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	120352172	120352172	G	T	SNP	ARHGEF12	NM_015313.1	human	genbank	58_37c	+1	reviewed	nonsense	c.4441	p.G1481*	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00233,HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS,superfamily_PH domain-like	-	no_errors
ATP2B4	493	genome.wustl.edu	37	1	203702418	203702418	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	203702418	203702418	G	T	SNP	ATP2B4	NM_001001396.1	human	genbank	58_37c	+1	reviewed	missense	c.3377	p.G1126V	1.000	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATRX	546	genome.wustl.edu	37	X	76949382	76949382	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	X	76949382	76949382	C	-	DEL	ATRX	NM_000489.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.415	p.D139fs	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
C6orf124	653483	genome.wustl.edu	37	6	168226763	168226763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	168226763	168226763	C	T	SNP	C6orf124	ENST00000357510	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-168226763	NULL	0.000	-	-	-	no_coding_region
CASC4	113201	genome.wustl.edu	37	15	44630015	44630015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	15	44630015	44630015	C	G	SNP	CASC4	NM_138423.2	human	genbank	58_37c	+1	reviewed	missense	c.631	p.Q211E	0.981	NULL	NULL	-	no_errors
CDK17	0	genome.wustl.edu	37	12	96728499	96728499	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	96728499	96728499	T	C	SNP	CDK17	NM_002595.3	human	genbank	58_37c	-1	reviewed	missense	c.116	p.N39S	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CEP164	22897	genome.wustl.edu	37	11	117263223	117263223	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	117263223	117263223	C	G	SNP	CEP164	NM_014956.4	human	genbank	58_37c	+1	validated	missense	c.2373	p.S791R	0.922	NULL	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain	-	no_errors
COL1A1	1277	genome.wustl.edu	37	17	48270012	48270012	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	48270012	48270012	G	T	SNP	COL1A1	NM_000088.3	human	genbank	58_37c	-1	reviewed	missense	c.1918	p.P640T	1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors
COL5A2	1290	genome.wustl.edu	37	2	189898939	189898939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	189898939	189898939	G	A	SNP	COL5A2	NM_000393.3	human	genbank	58_37c	-1	reviewed	missense	c.4357	p.R1453W	1.000	HMMPfam_COLFI,HMMSmart_COLFI	HMMPfam_COLFI,HMMSmart_COLFI,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors
CPAMD8	27151	genome.wustl.edu	37	19	17015133	17015133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	17015133	17015133	A	G	SNP	CPAMD8	NM_015692.2	human	genbank	58_37c	-1	validated	missense	c.4295	p.L1432P	1.000	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	HMMPfam_A2M,HMMPfam_Kazal_1,HMMSmart_SM00280,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,superfamily_Kazal-type serine protease inhibitors	-	no_errors
CYB5R4	51167	genome.wustl.edu	37	6	84574045	84574045	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	84574045	84574045	G	C	SNP	CYB5R4	NM_016230.3	human	genbank	58_37c	+1	validated	missense	c.227	p.R76T	1.000	HMMPfam_Cyt-b5,superfamily_Cyt_B5	HMMPfam_Cyt-b5,superfamily_Cyt_B5,HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_6,superfamily_HSP20_chap,HMMPfam_CS,superfamily_Riboflavin_synthase_like_b-brl,PatternScan_CYTOCHROME_B5_1,superfamily_SSF52343	-	no_errors
CYHR1	50626	genome.wustl.edu	37	8	145678614	145678614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	145678614	145678614	C	T	SNP	CYHR1	NM_138496.1	human	genbank	58_37c	-1	validated	missense	c.476	p.C159Y	1.000	superfamily_TRAF domain-like	superfamily_TRAF domain-like,superfamily_RING/U-box	-	no_errors
DAPK1	1612	genome.wustl.edu	37	9	90252867	90252867	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	90252867	90252867	T	A	SNP	DAPK1	NM_004938.2	human	genbank	58_37c	+1	reviewed	silent	c.294	p.G98	0.994	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_DEATH_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540	-	no_errors
DDX27	55661	genome.wustl.edu	37	20	47839853	47839853	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	20	47839853	47839853	G	T	SNP	DDX27	NM_017895.7	human	genbank	58_37c	+1	reviewed	nonsense	c.442	p.E148*	0.004	superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EDEM2	55741	genome.wustl.edu	37	20	33711728	33711728	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	20	33711728	33711728	G	T	SNP	EDEM2	NM_018217.2	human	genbank	58_37c	-1	validated	missense	c.1079	p.T360K	1.000	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	-	no_errors
ENSG00000236623	0	genome.wustl.edu	37	10	42389451	42389451	+	RNA	SNP	G	G	A	rs12782906	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	42389451	42389451	G	A	SNP	ENSG00000236623	ENST00000423802	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000246919	0	genome.wustl.edu	37	9	35103038	35103038	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	35103038	35103038	C	T	SNP	STOML2	NM_013442.1	human	genbank	58_37c	-1	provisional	splice_region	c.45+9	e1+9	0.113	-	-	-	no_errors
FAM5C	339479	genome.wustl.edu	37	1	190068153	190068153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	190068153	190068153	C	T	SNP	FAM5C	NM_199051.1	human	genbank	58_37c	-1	provisional	silent	c.1296	p.Q432	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
FASTKD2	22868	genome.wustl.edu	37	2	207656516	207656516	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	207656516	207656516	G	C	SNP	FASTKD2	NM_001136193.1	human	genbank	58_37c	+1	reviewed	missense	c.2123	p.S708T	0.005	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
GPR108	56927	genome.wustl.edu	37	19	6731903	6731903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	6731903	6731903	C	T	SNP	GPR108	NM_001080452.1	human	genbank	58_37c	-1	provisional	silent	c.1299	p.K433	1.000	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors
H6PD	9563	genome.wustl.edu	37	1	9322166	9322166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	9322166	9322166	A	C	SNP	H6PD	NM_004285.3	human	genbank	58_37c	+1	reviewed	missense	c.794	p.Q265P	1.000	HMMPfam_G6PD_C,superfamily_SSF55347	HMMPfam_G6PD_N,HMMPfam_G6PD_C,HMMPfam_Glucosamine_iso,superfamily_NAD(P)-bd,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF100950,superfamily_SSF55347	-	no_errors
HS3ST5	222537	genome.wustl.edu	37	6	114378677	114378677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	114378677	114378677	G	A	SNP	HS3ST5	NM_153612.3	human	genbank	58_37c	-1	validated	missense	c.785	p.P262L	1.000	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IGHV3-6	0	genome.wustl.edu	37	14	106237474	106237474	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	14	106237474	106237474	G	C	SNP	IGHG3	ENST00000390550	human	ensembl	58_37c	-1	known	missense	c.269	p.A90G	0.199	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KHDRBS2	202559	genome.wustl.edu	37	6	62390919	62390919	+	Silent	SNP	C	C	T	rs147572217	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	62390919	62390919	C	T	SNP	KHDRBS2	NM_152688.2	human	genbank	58_37c	-1	validated	silent	c.999	p.P333	0.009	NULL	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
KIAA0232	9778	genome.wustl.edu	37	4	6865167	6865167	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	6865167	6865167	G	T	SNP	KIAA0232	NM_001100590.1	human	genbank	58_37c	+1	validated	missense	c.3058	p.D1020Y	1.000	NULL	NULL	-	no_errors
KRT86	3892	genome.wustl.edu	37	12	52700002	52700002	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	52700002	52700002	C	G	SNP	KRT86	NM_002284.3	human	genbank	58_37c	+1	reviewed	silent	c.1185	p.S395	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LCP1	3936	genome.wustl.edu	37	13	46701847	46701847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	13	46701847	46701847	G	A	SNP	LCP1	NM_002298.4	human	genbank	58_37c	-1	reviewed	missense	c.1763	p.S588F	1.000	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMSmart_EFh,superfamily_Calponin-homology,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
LDLR	3949	genome.wustl.edu	37	19	11213440	11213440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	11213440	11213440	C	T	SNP	LDLR	NM_000527.3	human	genbank	58_37c	+1	reviewed	silent	c.291	p.N97	0.242	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LOC730110	730110	genome.wustl.edu	37	9	35148532	35148532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	35148532	35148532	G	A	SNP	LOC730110	XM_002342891.1	human	genbank	58_37c	-1	model	missense	c.650	p.S217F	0.029	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LRIG3	121227	genome.wustl.edu	37	12	59271267	59271267	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	59271267	59271267	G	C	SNP	LRIG3	NM_153377.3	human	genbank	58_37c	-1	provisional	missense	c.2451	p.C817W	1.000	NULL	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_RNI-like	-	no_errors
LRMP	4033	genome.wustl.edu	37	12	25254214	25254214	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	25254214	25254214	G	T	SNP	LRMP	NM_006152.2	human	genbank	58_37c	+1	reviewed	missense	c.844	p.V282F	0.986	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39797635	39797654	+	Frame_Shift_Del	DEL	ATAATCTGATTGACCAAGAT	ATAATCTGATTGACCAAGAT	-	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	ATAATCTGATTGACCAAGAT	ATAATCTGATTGACCAAGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	39797635	39797654	ATAATCTGATTGACCAAGAT	-	DEL	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.695_714	p.N233fs	0.998:0.988:0.999:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9057075	9057075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	9057075	9057075	G	C	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.30371	p.S10124W	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9064046	9064046	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	9064046	9064046	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.23400	p.T7800	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO7B	4648	genome.wustl.edu	37	2	128386057	128386057	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	128386057	128386057	G	T	SNP	MYO7B	NM_001080527.1	human	genbank	58_37c	+1	provisional	missense	c.4493	p.G1498V	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCKAP1L	3071	genome.wustl.edu	37	12	54917613	54917613	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	54917613	54917613	G	A	SNP	NCKAP1L	NM_005337.4	human	genbank	58_37c	+1	reviewed	missense	c.2029	p.D677N	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCSTN	23385	genome.wustl.edu	37	1	160327968	160327968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	160327968	160327968	C	T	SNP	NCSTN	NM_015331.2	human	genbank	58_37c	+1	reviewed	silent	c.2037	p.I679	1.000	NULL	HMMPfam_Nicastrin,PatternScan_WD_REPEATS_1,superfamily_Zn-dependent exopeptidases	-	no_errors
NFU1	27247	genome.wustl.edu	37	2	69642366	69642366	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	69642366	69642366	A	G	SNP	NFU1	NM_001002755.1	human	genbank	58_37c	-1	validated	silent	c.435	p.F145	1.000	HMMPfam_Nfu_N,superfamily_NIF_FeS_clus_asmbl_NifU-like_N	HMMPfam_NifU,HMMPfam_Nfu_N,superfamily_NIF_FeS_clus_asmbl_NifU-like_N	-	no_errors
NRP1	8829	genome.wustl.edu	37	10	33502337	33502337	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	33502337	33502337	C	T	SNP	NRP1	NM_003873.5	human	genbank	58_37c	-1	validated	missense	c.1591	p.D531N	1.000	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,superfamily_Galactose-binding domain-like	-	no_errors
NRP1	8829	genome.wustl.edu	37	10	33545247	33545247	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	33545247	33545247	C	A	SNP	NRP1	NM_003873.5	human	genbank	58_37c	-1	validated	nonsense	c.811	p.E271*	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,superfamily_Galactose-binding domain-like	-	no_errors
NT5E	4907	genome.wustl.edu	37	6	86201757	86201757	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	86201757	86201757	C	G	SNP	NT5E	NM_002526.2	human	genbank	58_37c	+1	validated	missense	c.1423	p.L475V	0.999	HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_1,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C,superfamily_SSF56300	-	no_errors
PCLO	27445	genome.wustl.edu	37	7	82582602	82582602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	7	82582602	82582602	G	A	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	missense	c.7667	p.S2556F	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PDE6C	5146	genome.wustl.edu	37	10	95422824	95422824	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	95422824	95422824	A	T	SNP	PDE6C	NM_006204.3	human	genbank	58_37c	+1	reviewed	missense	c.2407	p.S803C	1.000	HMMPfam_PDEase_I,superfamily_SSF109604	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	3	178928079	178928079	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1357	p.E453K	1.000	HMMPfam_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PITRM1	10531	genome.wustl.edu	37	10	3181215	3181215	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	10	3181215	3181215	T	A	SNP	PITRM1	NM_014889.2	human	genbank	58_37c	-1	validated	missense	c.2798	p.Q933L	0.120	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_M16C_assoc	-	no_errors
PRAMEF2	65122	genome.wustl.edu	37	1	12921147	12921147	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	12921147	12921147	T	C	SNP	PRAMEF2	NM_023014.1	human	genbank	58_37c	+1	provisional	missense	c.938	p.L313P	0.029	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
RBBP6	5930	genome.wustl.edu	37	16	24582488	24582488	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	16	24582488	24582488	T	G	SNP	RBBP6	NM_006910.4	human	genbank	58_37c	+1	reviewed	missense	c.4101	p.S1367R	0.047	NULL	HMMSmart_SM00184,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_U-box,HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,superfamily_RING/U-box	-	no_errors
RGS20	8601	genome.wustl.edu	37	8	54866817	54866817	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	54866817	54866817	G	C	SNP	RGS20	NM_170587.2	human	genbank	58_37c	+1	validated	missense	c.925	p.E309Q	1.000	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	-	no_errors
RGS4	5999	genome.wustl.edu	37	1	163043400	163043400	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	163043400	163043400	G	C	SNP	RGS4	NM_001102445.2	human	genbank	58_37c	+1	reviewed	missense	c.657	p.Q219H	1.000	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam	-	no_errors
RNF38	152006	genome.wustl.edu	37	9	36344831	36344831	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	36344831	36344831	A	G	SNP	RNF38	NM_022781.4	human	genbank	58_37c	-1	reviewed	silent	c.1383	p.T461	1.000	superfamily_RING/U-box	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RUNX2	860	genome.wustl.edu	37	6	45513000	45513000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	45513000	45513000	C	T	SNP	RUNX2	NM_001024630.3	human	genbank	58_37c	+1	reviewed	silent	c.1272	p.L424	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SARS2	54938	genome.wustl.edu	37	19	39409429	39409429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	19	39409429	39409429	C	T	SNP	SARS2	NM_017827.3	human	genbank	58_37c	-1	reviewed	missense	c.784	p.D262N	1.000	HMMPfam_tRNA-synt_2b,superfamily_SSF55681	HMMPfam_tRNA-synt_2b,superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N,superfamily_SSF55681	-	no_errors
SBF2	81846	genome.wustl.edu	37	11	10014057	10014057	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	11	10014057	10014057	T	G	SNP	SBF2	NM_030962.3	human	genbank	58_37c	-1	reviewed	missense	c.1201	p.N401H	1.000	HMMPfam_dDENN,HMMSmart_SM00801	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SDK2	54549	genome.wustl.edu	37	17	71410870	71410870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	71410870	71410870	G	A	SNP	SDK2	NM_001144952.1	human	genbank	58_37c	-1	provisional	silent	c.2397	p.H799	0.682	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SEMA4F	10505	genome.wustl.edu	37	2	74902498	74902498	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	74902498	74902498	C	G	SNP	SEMA4F	NM_004263.3	human	genbank	58_37c	+1	provisional	silent	c.1359	p.L453	0.995	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
SF3B1	23451	genome.wustl.edu	37	2	198274677	198274677	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	2	198274677	198274677	C	A	SNP	SF3B1	NM_012433.2	human	genbank	58_37c	-1	reviewed	nonsense	c.721	p.G241*	1.000	NULL	HMMPfam_HEAT,HMMPfam_SF3b1,superfamily_ARM repeat	-	no_errors
SHC3	53358	genome.wustl.edu	37	9	91660705	91660705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	91660705	91660705	C	T	SNP	SHC3	NM_016848.4	human	genbank	58_37c	-1	validated	missense	c.1157	p.G386E	1.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
SHROOM2	357	genome.wustl.edu	37	X	9863794	9863794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	X	9863794	9863794	G	A	SNP	SHROOM2	NM_001649.2	human	genbank	58_37c	+1	reviewed	missense	c.1846	p.V616M	0.007	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC5A4	6527	genome.wustl.edu	37	22	32631034	32631034	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	22	32631034	32631034	C	T	SNP	SLC5A4	NM_014227.2	human	genbank	58_37c	-1	validated	silent	c.711	p.V237	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SMC2	10592	genome.wustl.edu	37	9	106887243	106887243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	106887243	106887243	G	A	SNP	SMC2	NM_001042550.1	human	genbank	58_37c	+1	validated	missense	c.2308	p.E770K	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SPEM1	374768	genome.wustl.edu	37	17	7324627	7324627	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	7324627	7324627	T	C	SNP	SPEM1	NM_199339.2	human	genbank	58_37c	+1	provisional	silent	c.633	p.P211	0.012	NULL	NULL	-	no_errors
STAT6	6778	genome.wustl.edu	37	12	57500358	57500358	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	12	57500358	57500358	G	A	SNP	STAT6	NM_003153.4	human	genbank	58_37c	-1	reviewed	silent	c.484	p.L162	0.984	HMMPfam_STAT_alpha,superfamily_STAT	HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain	-	no_errors
STOML2	30968	genome.wustl.edu	37	9	35101259	35101259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	9	35101259	35101259	C	T	SNP	STOML2	NM_013442.1	human	genbank	58_37c	-1	provisional	silent	c.597	p.R199	1.000	HMMPfam_Band_7	HMMPfam_Band_7,HMMSmart_PHB	-	no_errors
SYCP2L	221711	genome.wustl.edu	37	6	10926595	10926595	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	6	10926595	10926595	C	T	SNP	SYCP2L	NM_001040274.2	human	genbank	58_37c	+1	validated	silent	c.1242	p.I414	0.000	NULL	NULL	-	no_errors
TMEM70	54968	genome.wustl.edu	37	8	74893669	74893669	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	74893669	74893669	A	G	SNP	TMEM70	NM_017866.5	human	genbank	58_37c	+1	reviewed	missense	c.596	p.D199G	1.000	HMMPfam_DUF1301	HMMPfam_DUF1301	-	no_errors
TMEM74	157753	genome.wustl.edu	37	8	109796543	109796543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	8	109796543	109796543	C	T	SNP	TMEM74	NM_153015.1	human	genbank	58_37c	-1	provisional	missense	c.785	p.R262Q	0.978	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	17	7578370	7578370	C	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors
TRPC3	7222	genome.wustl.edu	37	4	122853549	122853549	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	4	122853549	122853549	G	A	SNP	TRPC3	NM_001130698.1	human	genbank	58_37c	-1	validated	silent	c.864	p.I288	1.000	HMMPfam_TRP_2	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2	-	no_errors
WDR93	56964	genome.wustl.edu	37	15	90258281	90258281	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	15	90258281	90258281	C	T	SNP	WDR93	NM_020212.1	human	genbank	58_37c	+1	provisional	silent	c.711	p.P237	0.014	NULL	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1	-	no_errors
ZNF434	54925	genome.wustl.edu	37	16	3432953	3432953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	16	3432953	3432953	G	A	SNP	ZNF434	NM_017810.2	human	genbank	58_37c	-1	provisional	missense	c.1357	p.H453Y	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF501	115560	genome.wustl.edu	37	3	44776563	44776572	+	Frame_Shift_Del	DEL	TTTATAAGTG	TTTATAAGTG	-	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	TTTATAAGTG	TTTATAAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	3	44776563	44776572	TTTATAAGTG	-	DEL	ZNF501	NM_145044.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.650_659	p.Y218fs	0.282:0.160:0.171:0.105:0.069:0.077:0.069:0.067:0.894:0.921	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF642	339559	genome.wustl.edu	37	1	40947462	40947462	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	40947462	40947462	T	A	SNP	ZNF642	NM_198494.2	human	genbank	58_37c	+1	validated	missense	c.155	p.V52E	0.002	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZSCAN20	7579	genome.wustl.edu	37	1	33956633	33956633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A075-01A-11D-A099-09	TCGA-A8-A075-10B-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	085dd125-1f95-46aa-a480-2965090e8591	d67faef9-d467-4476-bbe9-181225c15e7b	1	33956633	33956633	G	T	SNP	ZSCAN20	NM_145238.3	human	genbank	58_37c	+1	validated	missense	c.775	p.V259F	0.984	NULL	HMMSmart_SM00717,HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
