Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS15	170689	genome.wustl.edu	37	11	130343335	130343335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	130343335	130343335	C	T	SNP	ADAMTS15	NM_139055.2	human	genbank	58_37c	+1	reviewed	silent	c.2472	p.S824	0.920	NULL	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,PatternScan_CYSTEINE_SWITCH,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_spacer1,PatternScan_DISINTEGRIN_1,superfamily_SSF55486	-	no_errors
ARID1A	8289	genome.wustl.edu	37	1	27094455	27094456	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	27094455	27094456	TA	-	DEL	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3163_3164	p.Y1055fs	1.000:1.000	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
CADPS	8618	genome.wustl.edu	37	3	62578366	62578366	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	3	62578366	62578366	C	T	SNP	CADPS	NM_003716.3	human	genbank	58_37c	-1	reviewed	silent	c.1383	p.K461	1.000	HMMPfam_C2	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
CCR10	2826	genome.wustl.edu	37	17	40832609	40832609	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	17	40832609	40832609	A	-	DEL	CCR10	NM_016602.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.51	p.D17fs	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
CRTC2	200186	genome.wustl.edu	37	1	153927365	153927365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	153927365	153927365	C	T	SNP	CRTC2	NM_181715.1	human	genbank	58_37c	-1	provisional	missense	c.356	p.R119H	1.000	NULL	NULL	-	no_errors
DHX32	55760	genome.wustl.edu	37	10	127529507	127529509	+	In_Frame_Del	DEL	CCA	CCA	-	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	CCA	CCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	10	127529507	127529509	CCA	-	DEL	DHX32	NM_018180.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1602_1600	p.W534in_frame_del	0.612:0.621:0.423	HMMPfam_HA2	HMMPfam_HA2,HMMPfam_DUF1605,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOCK8	81704	genome.wustl.edu	37	9	377063	377063	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	9	377063	377063	C	T	SNP	DOCK8	NM_203447.3	human	genbank	58_37c	+1	reviewed	silent	c.2088	p.I696	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
ENSG00000186232	0	genome.wustl.edu	37	11	4351632	4351632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	4351632	4351632	G	A	SNP	ENSG00000186232	ENST00000334468	human	ensembl	58_37c	+1	known	missense	c.538	p.E180K	0.985	HMMPfam_Ssu72	HMMPfam_Ssu72	-	no_errors
FARSB	10056	genome.wustl.edu	37	2	223520777	223520777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	2	223520777	223520777	C	T	SNP	FARSB	NM_005687.3	human	genbank	58_37c	-1	reviewed	missense	c.16	p.V6M	1.000	superfamily_Putative DNA-binding domain	HMMPfam_B3_4,superfamily_B3/B4 domain of PheRS PheT,HMMPfam_B5,superfamily_Putative DNA-binding domain,superfamily_Class II aaRS and biotin synthetases	-	no_errors
FRY	10129	genome.wustl.edu	37	13	32783135	32783135	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	13	32783135	32783135	C	G	SNP	FRY	NM_023037.2	human	genbank	58_37c	+1	validated	silent	c.4164	p.V1388	0.712	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
FTSJD2	23070	genome.wustl.edu	37	6	37427448	37427448	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	6	37427448	37427448	G	A	SNP	FTSJD2	NM_015050.2	human	genbank	58_37c	+1	validated	silent	c.1083	p.L361	1.000	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
GNB3	2784	genome.wustl.edu	37	12	6952645	6952645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	12	6952645	6952645	G	A	SNP	GNB3	NM_002075.2	human	genbank	58_37c	+1	reviewed	missense	c.386	p.R129H	0.996	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
HCCS	3052	genome.wustl.edu	37	X	11136711	11136711	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	X	11136711	11136711	G	A	SNP	HCCS	NM_001122608.2	human	genbank	58_37c	+1	reviewed	silent	c.492	p.E164	1.000	HMMPfam_Cyto_heme_lyase,PatternScan_CYTO_HEME_LYASE_1	HMMPfam_Cyto_heme_lyase,PatternScan_CYTO_HEME_LYASE_1,PatternScan_CYTO_HEME_LYASE_2	-	no_errors
HEATR3	55027	genome.wustl.edu	37	16	50102690	50102690	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	16	50102690	50102690	G	T	SNP	HEATR3	NM_182922.2	human	genbank	58_37c	+1	provisional	splice_site	c.312-1	e3-1	1.000	-	-	-	no_errors
INTS5	80789	genome.wustl.edu	37	11	62414499	62414499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	62414499	62414499	C	T	SNP	INTS5	NM_030628.1	human	genbank	58_37c	-1	provisional	missense	c.3053	p.G1018E	1.000	NULL	NULL	-	no_errors
ITGA11	22801	genome.wustl.edu	37	15	68654007	68654007	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	15	68654007	68654007	G	T	SNP	ITGA11	NM_001004439.1	human	genbank	58_37c	-1	reviewed	missense	c.393	p.S131R	0.999	superfamily_Integrin alpha N-terminal domain	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
KIFAP3	22920	genome.wustl.edu	37	1	170004659	170004659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	1	170004659	170004659	C	T	SNP	KIFAP3	NM_014970.2	human	genbank	58_37c	-1	reviewed	missense	c.553	p.E185K	1.000	HMMPfam_KAP,superfamily_ARM repeat	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat	-	no_errors
MED23	9439	genome.wustl.edu	37	6	131911508	131911508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	6	131911508	131911508	G	A	SNP	MED23	NM_004830.2	human	genbank	58_37c	-1	reviewed	missense	c.3761	p.P1254L	1.000	NULL	NULL	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	8993436	8993436	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	19	8993436	8993436	G	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.41653	p.L13885M	0.000	HMMPfam_SEA,superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
PCDH9	5101	genome.wustl.edu	37	13	67802470	67802470	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	13	67802470	67802470	G	C	SNP	PCDH9	NM_203487.2	human	genbank	58_37c	-1	reviewed	missense	c.103	p.P35A	1.000	HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like	-	no_errors
PCDHGB3	56102	genome.wustl.edu	37	5	140750139	140750139	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	5	140750139	140750139	G	T	SNP	PCDHGB3	NM_018924.2	human	genbank	58_37c	+1	reviewed	missense	c.178	p.D60Y	0.007	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178928067	178928093	+	In_Frame_Del	DEL	CCTCATGGATTAGAAGATTTGCTGAAC	CCTCATGGATTAGAAGATTTGCTGAAC	-	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	CCTCATGGATTAGAAGATTTGCTGAAC	CCTCATGGATTAGAAGATTTGCTGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	3	178928067	178928093	CCTCATGGATTAGAAGATTTGCTGAAC	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1345_1371	p.HGLEDLLNP450in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.984:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.998:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000	HMMPfam_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
SLC7A14	57709	genome.wustl.edu	37	3	170201117	170201117	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	3	170201117	170201117	G	A	SNP	SLC7A14	NM_020949.2	human	genbank	58_37c	-1	validated	silent	c.1101	p.D367	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SPTBN4	57731	genome.wustl.edu	37	19	41021284	41021284	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	19	41021284	41021284	C	T	SNP	SPTBN4	NM_020971.2	human	genbank	58_37c	+1	reviewed	silent	c.2832	p.V944	0.815	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
SSRP1	6749	genome.wustl.edu	37	11	57099870	57099870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	11	57099870	57099870	G	T	SNP	SSRP1	NM_003146.2	human	genbank	58_37c	-1	reviewed	missense	c.859	p.L287M	1.000	HMMPfam_SSrecog	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_SSrecog,superfamily_HMG-box	-	no_errors
TMEM71	137835	genome.wustl.edu	37	8	133764157	133764157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07J-01A-11W-A019-09	TCGA-A8-A07J-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c8eac36c-c3a7-4c88-b928-832ab279045b	2dae6992-3060-4e22-9383-698c791cd3b1	8	133764157	133764157	C	T	SNP	TMEM71	NM_144649.2	human	genbank	58_37c	-1	validated	missense	c.188	p.R63Q	1.000	NULL	NULL	-	no_errors
