Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AARS2	57505	genome.wustl.edu	37	6	44278884	44278884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	44278884	44278884	C	T	SNP	AARS2	NM_020745.2	human	genbank	58_37c	-1	validated	missense	c.596	p.R199H	0.908	HMMPfam_tRNA-synt_2c,superfamily_SSF55681	HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681	-	no_errors
ABCA4	24	genome.wustl.edu	37	1	94466444	94466444	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	94466444	94466444	T	A	SNP	ABCA4	NM_000350.2	human	genbank	58_37c	-1	reviewed	missense	c.6427	p.M2143L	1.000	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540	HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ACVR1B	91	genome.wustl.edu	37	12	52379131	52379131	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	52379131	52379131	C	T	SNP	ACVR1B	NM_004302.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1135	p.R379*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AFF2	2334	genome.wustl.edu	37	X	148037946	148037946	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	148037946	148037946	C	G	SNP	AFF2	NM_002025.3	human	genbank	58_37c	+1	reviewed	missense	c.2371	p.P791A	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ALG10B	144245	genome.wustl.edu	37	12	38714401	38714401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	38714401	38714401	G	A	SNP	ALG10B	NM_001013620.3	human	genbank	58_37c	+1	validated	missense	c.808	p.V270I	0.010	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
AOAH	313	genome.wustl.edu	37	7	36698846	36698846	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	36698846	36698846	A	G	SNP	AOAH	NM_001637.3	human	genbank	58_37c	-1	reviewed	silent	c.315	p.D105	1.000	HMMPfam_SapB_2,HMMSmart_SapB,superfamily_Saposin_like	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SapB,PatternScan_LIPASE_GDSL_SER,superfamily_Saposin_like,superfamily_Esterase_SGNH_hydro-type	-	no_errors
C14orf37	145407	genome.wustl.edu	37	14	58598350	58598350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	14	58598350	58598350	G	A	SNP	C14orf37	NM_001001872.2	human	genbank	58_37c	-1	predicted	missense	c.1711	p.P571S	0.000	NULL	NULL	-	no_errors
C9orf125	84302	genome.wustl.edu	37	9	104238341	104238341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	9	104238341	104238341	C	T	SNP	C9orf125	NM_032342.1	human	genbank	58_37c	-1	provisional	missense	c.1034	p.R345H	1.000	NULL	NULL	-	no_errors
CAMK2D	817	genome.wustl.edu	37	4	114434519	114434519	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	4	114434519	114434519	A	G	SNP	CAMK2D	NM_001221.3	human	genbank	58_37c	-1	reviewed	missense	c.911	p.I304T	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121222032	121222032	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	8	121222032	121222032	C	T	SNP	COL14A1	NM_021110.1	human	genbank	58_37c	+1	validated	silent	c.1359	p.D453	0.956	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
D2HGDH	728294	genome.wustl.edu	37	2	242695381	242695381	+	Missense_Mutation	SNP	G	G	A	rs149504235	byFrequency	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	242695381	242695381	G	A	SNP	D2HGDH	NM_152783.3	human	genbank	58_37c	+1	reviewed	missense	c.1258	p.A420T	0.000	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain	HMMPfam_FAD-oxidase_C,HMMPfam_FAD_binding_4,superfamily_FAD-linked oxidases C-terminal domain,superfamily_FAD-binding domain	-	no_errors
DNHD1	144132	genome.wustl.edu	37	11	6579764	6579764	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	6579764	6579764	G	A	SNP	DNHD1	NM_144666.2	human	genbank	58_37c	+1	provisional	missense	c.9052	p.D3018N	0.697	NULL	HMMPfam_Dynein_heavy,superfamily_Ferritin-like,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000245609	0	genome.wustl.edu	37	16	21831680	21831680	+	RNA	DEL	A	A	-	rs11307069	byCluster	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	16	21831680	21831680	A	-	DEL	ENSG00000248124	ENST00000514813	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.645	-	-	-	no_errors
FAM157C	0	genome.wustl.edu	37	16	90167886	90167886	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	16	90167886	90167886	G	C	SNP	FAM157C	XM_001714162.2	human	genbank	58_37c	+1	model	missense	c.89	p.R30P	0.029	NULL	NULL	-	no_errors
FAM59B	150946	genome.wustl.edu	37	2	26405961	26405961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	26405961	26405961	G	A	SNP	FAM59B	ENST00000380681	human	ensembl	58_37c	+1	known	missense	c.718	p.V240I	1.000	NULL	HMMPfam_SAM_1,superfamily_SAM/Pointed domain	-	no_errors
FGF23	8074	genome.wustl.edu	37	12	4479739	4479739	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	4479739	4479739	G	T	SNP	FGF23	NM_020638.2	human	genbank	58_37c	-1	reviewed	silent	c.526	p.R176	0.901	NULL	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like	-	no_errors
GPR39	2863	genome.wustl.edu	37	2	133175158	133175158	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	133175158	133175158	G	T	SNP	GPR39	NM_001508.2	human	genbank	58_37c	+1	validated	silent	c.543	p.V181	0.184	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GRM3	2913	genome.wustl.edu	37	7	86415634	86415634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	86415634	86415634	G	A	SNP	GRM3	NM_000840.2	human	genbank	58_37c	+1	reviewed	missense	c.526	p.A176T	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
LAMA2	3908	genome.wustl.edu	37	6	129785500	129785500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	129785500	129785500	G	A	SNP	LAMA2	NM_000426.3	human	genbank	58_37c	+1	reviewed	missense	c.7058	p.R2353H	1.000	superfamily_ConA_like_lec_gl	HMMPfam_Laminin_B,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF56399,superfamily_SSF57196	-	no_errors
LOC100131539	0	genome.wustl.edu	37	11	71527792	71527792	+	Silent	SNP	T	T	C	rs79877728	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	71527792	71527792	T	C	SNP	LOC100131539	XM_001723234.2	human	genbank	58_37c	-1	model	silent	c.669	p.T223	0.761	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100132858	0	genome.wustl.edu	37	7	36290	36290	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	7	36290	36290	C	G	SNP	LOC100132858	XM_001715131.2	human	genbank	58_37c	-1	model	missense	c.89	p.R30P	0.007	NULL	NULL	-	no_errors
LOC646096	646096	genome.wustl.edu	37	15	20496657	20496657	+	RNA	SNP	C	C	T	rs7180374	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	15	20496657	20496657	C	T	SNP	LOC646096	XR_040858.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.921	-	-	-	no_errors
MCAM	4162	genome.wustl.edu	37	11	119181587	119181587	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	119181587	119181587	G	T	SNP	MCAM	NM_006500.2	human	genbank	58_37c	-1	validated	silent	c.1672	p.R558	0.785	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
NID1	4811	genome.wustl.edu	37	1	236205579	236205579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	236205579	236205579	C	T	SNP	NID1	NM_002508.2	human	genbank	58_37c	-1	reviewed	missense	c.766	p.G256R	0.989	HMMPfam_NIDO,HMMSmart_SM00539	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
NTSR2	23620	genome.wustl.edu	37	2	11802135	11802135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	2	11802135	11802135	C	T	SNP	NTSR2	NM_012344.3	human	genbank	58_37c	-1	reviewed	missense	c.856	p.V286M	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
NUP153	9972	genome.wustl.edu	37	6	17629273	17629273	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	17629273	17629273	T	A	SNP	NUP153	NM_005124.2	human	genbank	58_37c	-1	reviewed	missense	c.3157	p.I1053L	0.000	NULL	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,HMMPfam_Nup153,HMMPfam_Nup_retrotrp_bd	-	no_errors
PGD	5226	genome.wustl.edu	37	1	10477067	10477067	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	10477067	10477067	T	G	SNP	PGD	NM_002631.2	human	genbank	58_37c	+1	reviewed	missense	c.868	p.L290V	1.000	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like	HMMPfam_6PGD,HMMPfam_NAD_binding_2,PatternScan_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
PHACTR1	221692	genome.wustl.edu	37	6	13287303	13287303	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	6	13287303	13287303	G	T	SNP	PHACTR1	NM_030948.1	human	genbank	58_37c	+1	validated	missense	c.1736	p.R579L	1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	-	no_errors
PHLDA1	22822	genome.wustl.edu	37	12	76424820	76424820	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	76424820	76424820	G	T	SNP	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	missense	c.702	p.F234L	1.000	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
PKD1L2	114780	genome.wustl.edu	37	16	81242149	81242150	+	Frame_Shift_Del	DEL	TT	TT	-	rs62734462	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	16	81242149	81242150	TT	-	DEL	PKD1L2	NM_001076780.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.707_706	p.N236fs	0.998:0.999	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
RFPL1S	10740	genome.wustl.edu	37	22	29835418	29835418	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	22	29835418	29835418	C	A	SNP	RFPL1S	NR_002727.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
SNRPN	6638	genome.wustl.edu	37	15	25222051	25222051	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	15	25222051	25222051	G	T	SNP	SNRPN	NM_003097.3	human	genbank	58_37c	+1	reviewed	nonsense	c.295	p.G99*	1.000	NULL	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins	-	no_errors
SUPT5H	6829	genome.wustl.edu	37	19	39955678	39955678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	19	39955678	39955678	G	A	SNP	SUPT5H	NM_001111020.2	human	genbank	58_37c	+1	validated	missense	c.865	p.D289N	1.000	HMMSmart_SM00739	HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain	-	no_errors
TGFBR2	7048	genome.wustl.edu	37	3	30732950	30732950	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	3	30732950	30732950	G	A	SNP	TGFBR2	NM_001024847.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1638	p.W546*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_ecTbetaR2,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
TOR1AIP1	26092	genome.wustl.edu	37	1	179870511	179870511	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	1	179870511	179870511	G	T	SNP	TOR1AIP1	NM_015602.2	human	genbank	58_37c	+1	validated	missense	c.727	p.D243Y	0.068	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	17	7574003	7574003	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1024	p.R342*	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPSAB1	7177	genome.wustl.edu	37	16	1292350	1292350	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	16	1292350	1292350	G	A	SNP	TPSAB1	ENST00000423126	human	ensembl	58_37c	+1	known	silent	c.696	p.P232	0.010	HMMSmart_SM00020	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS	-	no_errors
USP2	9099	genome.wustl.edu	37	11	119229504	119229504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	11	119229504	119229504	G	A	SNP	USP2	NM_004205.4	human	genbank	58_37c	-1	validated	missense	c.1216	p.R406W	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
USP5	8078	genome.wustl.edu	37	12	6964674	6964674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	12	6964674	6964674	G	A	SNP	USP5	NM_001098536.1	human	genbank	58_37c	+1	validated	missense	c.221	p.R74Q	0.995	NULL	HMMPfam_UBA,HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,superfamily_UBA-like,HMMSmart_SM00165,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
USP9X	8239	genome.wustl.edu	37	X	41076559	41076559	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0G0-01A-11W-A050-09	TCGA-AN-A0G0-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9eb55dd2-a956-4dfe-8631-04722c49819f	eb7cc6da-9544-4308-8627-1b4015493c58	X	41076559	41076559	C	G	SNP	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	missense	c.6172	p.H2058D	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
