Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADCY6	0	genome.wustl.edu	37	12	49167398	49167398	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	12	49167398	49167398	C	T	SNP	ADCY6	NM_015270.3	human	genbank	58_37c	-1	reviewed	silent	c.2475	p.L825	1.000	NULL	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ASPHD2	0	genome.wustl.edu	37	22	26829760	26829761	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	26829760	26829761	-	T	INS	ASPHD2	NM_020437.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.179_180	p.V61fs	0.889:0.000	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
CDC42EP1	0	genome.wustl.edu	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	DEL	CDC42EP1	NM_152243.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.758_778	p.ANPSAPA257in_frame_del	0.003:0.000:0.000:0.000:0.000:0.019:0.024:0.016:0.013:0.013:0.000:0.000:0.000:0.001:0.000:0.001:0.004:0.011:0.056:0.092:0.133	NULL	HMMPfam_PBD,HMMSmart_SM00285	-	no_errors
DCP1B	0	genome.wustl.edu	37	12	2062323	2062324	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	12	2062323	2062324	-	TGC	INS	DCP1B	NM_152640.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.783_782	p.262in_frame_insQ	0.742:0.836	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DENND4C	0	genome.wustl.edu	37	9	19342689	19342689	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	9	19342689	19342689	C	T	SNP	DENND4C	NM_017925.4	human	genbank	58_37c	+1	provisional	silent	c.2208	p.H736	0.831	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
ENTPD5	0	genome.wustl.edu	37	14	74442670	74442670	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	14	74442670	74442670	A	G	SNP	ENTPD5	NM_001249.2	human	genbank	58_37c	-1	reviewed	missense	c.691	p.F231L	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
EWSR1	0	genome.wustl.edu	37	22	29694768	29694768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	22	29694768	29694768	G	A	SNP	EWSR1	NM_005243.3	human	genbank	58_37c	+1	reviewed	missense	c.1463	p.G488E	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FAM58B	0	genome.wustl.edu	37	1	200182704	200182727	+	In_Frame_Del	DEL	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	GAGGACGCCGGAGAGGAGGCCGGA	GAGGACGCCGGAGAGGAGGCCGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	1	200182704	200182727	GAGGACGCCGGAGAGGAGGCCGGA	-	DEL	FAM58B	NM_001105517.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.13_36	p.GEEAGEDA8in_frame_del	0.000:0.002:0.001:0.001:0.001:0.001:0.002:0.000:0.001:0.001:0.003:0.002:0.001:0.000:0.000:0.001:0.000:0.001:0.003:0.007:0.011:0.029:0.029:0.038	NULL	HMMSmart_CYCLIN,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
HCFC1	0	genome.wustl.edu	37	X	153236144	153236145	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	153236144	153236145	-	A	INS	HCFC1	NM_005334.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.148_147	p.G49fs	1.000:0.968	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
INTS4L1	0	genome.wustl.edu	37	7	64639752	64639752	+	RNA	SNP	A	A	T	rs79932997	byFrequency	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	64639752	64639752	A	T	SNP	INTS4L1	XR_079496.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
LOC100132858	0	genome.wustl.edu	37	7	35442	35443	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	35442	35443	-	TGC	INS	LOC100132858	XM_001715131.2	human	genbank	58_37c	-1	model	in_frame_ins	c.255_254	p.86in_frame_insQ	0.128:0.044	NULL	NULL	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454734	66454734	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	9	66454734	66454734	C	T	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.221	p.G74E	0.013	NULL	NULL	-	no_errors
LRIT3	0	genome.wustl.edu	37	4	110772968	110772968	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	4	110772968	110772968	C	T	SNP	LRIT3	NM_198506.2	human	genbank	58_37c	+1	validated	missense	c.290	p.T97I	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MAGI1	0	genome.wustl.edu	37	3	65425560	65425561	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	65425560	65425561	-	CTG	INS	MAGI1	NM_001033057.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1264_1263	p.421in_frame_insQ	0.208:0.001	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NFRKB	0	genome.wustl.edu	37	11	129751713	129751713	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	129751713	129751713	T	A	SNP	NFRKB	NM_006165.3	human	genbank	58_37c	-1	validated	silent	c.1302	p.P434	0.422	NULL	NULL	-	no_errors
NUP210	0	genome.wustl.edu	37	3	13418986	13418986	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	13418986	13418986	G	A	SNP	NUP210	NM_024923.2	human	genbank	58_37c	-1	reviewed	silent	c.1122	p.D374	0.998	NULL	HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments	-	no_errors
OSBPL5	0	genome.wustl.edu	37	11	3115043	3115043	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	3115043	3115043	C	A	SNP	OSBPL5	NM_020896.3	human	genbank	58_37c	-1	reviewed	missense	c.1742	p.S581I	0.471	HMMPfam_Oxysterol_BP	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
OSR2	0	genome.wustl.edu	37	8	99963879	99963880	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	8	99963879	99963880	TG	-	DEL	OSR2	NM_001142462.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.889_890	p.C297fs	1.000:1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PPFIA1	0	genome.wustl.edu	37	11	70218382	70218382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	11	70218382	70218382	G	A	SNP	PPFIA1	NM_003626.2	human	genbank	58_37c	+1	reviewed	missense	c.2927	p.G976D	1.000	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
RSRC1	0	genome.wustl.edu	37	3	158262060	158262060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	158262060	158262060	C	T	SNP	RSRC1	NM_016625.2	human	genbank	58_37c	+1	provisional	missense	c.1001	p.A334V	1.000	NULL	NULL	-	no_errors
SMOC2	0	genome.wustl.edu	37	6	168910728	168910728	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	168910728	168910728	A	T	SNP	SMOC2	NM_022138.2	human	genbank	58_37c	+1	reviewed	missense	c.218	p.D73V	1.000	superfamily_Thyroglobulin_1,HMMPfam_Kazal_1,HMMSmart_KAZAL	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1,HMMSmart_EFh,HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152454589	152454589	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	6	152454589	152454589	C	A	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	missense	c.25823	p.R8608I	1.000	superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TLR7	0	genome.wustl.edu	37	X	12905869	12905869	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	12905869	12905869	C	T	SNP	TLR7	NM_016562.3	human	genbank	58_37c	+1	reviewed	nonsense	c.2242	p.Q748*	0.602	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
TNS3	0	genome.wustl.edu	37	7	47408710	47408710	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	47408710	47408710	G	C	SNP	TNS3	NM_022748.10	human	genbank	58_37c	-1	validated	silent	c.1533	p.T511	1.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
TSC22D1	0	genome.wustl.edu	37	13	45148706	45148708	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	45148706	45148708	TGC	-	DEL	TSC22D1	NM_183422.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1505_1503	p.Q505in_frame_del	0.002:0.004:0.000	NULL	HMMPfam_TSC22,PatternScan_TSC22	-	no_errors
USPL1	0	genome.wustl.edu	37	13	31231753	31231753	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	13	31231753	31231753	A	G	SNP	USPL1	NM_005800.4	human	genbank	58_37c	+1	validated	silent	c.1539	p.P513	0.000	NULL	NULL	-	no_errors
WDR52	0	genome.wustl.edu	37	3	113010507	113010507	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	3	113010507	113010507	G	T	SNP	WDR52	ENST00000393845	human	ensembl	58_37c	-1	known	nonsense	c.2906	p.S969*	0.000	NULL	NULL	-	no_errors
WDR87	0	genome.wustl.edu	37	19	38377392	38377409	+	In_Frame_Del	DEL	CCTCCTCCTCCTCCCTTA	CCTCCTCCTCCTCCCTTA	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	CCTCCTCCTCCTCCCTTA	CCTCCTCCTCCTCCCTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	19	38377392	38377409	CCTCCTCCTCCTCCCTTA	-	DEL	WDR87	NM_031951.3	human	genbank	58_37c	-1	provisional	in_frame_del	c.6802_6785	p.VREEEE2262in_frame_del	0.003:0.004:0.018:0.026:0.130:0.738:0.713:0.701:0.633:0.052:0.004:0.021:0.032:0.000:0.002:0.003:0.000:0.000	superfamily_WD40 repeat-like,superfamily_ARM repeat	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,PatternScan_C_TYPE_LECTIN_1,HMMPfam_WD40	-	no_errors
WWC3	0	genome.wustl.edu	37	X	10046872	10046872	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	X	10046872	10046872	A	G	SNP	WWC3	NM_015691.3	human	genbank	58_37c	+1	validated	missense	c.254	p.D85G	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ZNF273	0	genome.wustl.edu	37	7	64389505	64389506	+	RNA	INS	-	-	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	7	64389505	64389506	-	T	INS	ZNF273	NR_003099.1	human	genbank	58_37c	+1	reviewed	rna	NULL	NULL	0.153:0.142	-	-	-	no_errors
ZNF337	0	genome.wustl.edu	37	20	25666719	25666720	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	20	25666719	25666720	GG	-	DEL	ZNF337	NM_015655.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.67_66	p.Q23fs	0.001:0.001	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF354C	0	genome.wustl.edu	37	5	178506093	178506093	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	5	178506093	178506093	A	G	SNP	ZNF354C	NM_014594.1	human	genbank	58_37c	+1	provisional	silent	c.660	p.E220	0.023	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZSCAN2	0	genome.wustl.edu	37	15	85164374	85164374	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KO-01A-31D-A188-09	TCGA-AO-A1KO-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2cdecb2b-40b1-4419-bcd9-101cee78966c	9c3bd11e-386d-4ad4-a8c4-73eae17d537e	15	85164374	85164374	C	T	SNP	ZSCAN2	NM_181877.3	human	genbank	58_37c	+1	reviewed	silent	c.948	p.S316	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
