Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACCN3	9311	genome.wustl.edu	37	7	150749810	150749810	+	Silent	SNP	G	G	A	rs2288646	byCluster;by1000genomes	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	7	150749810	150749810	G	A	SNP	ACCN3	NM_020322.2	human	genbank	58_37c	+1	reviewed	silent	c.1608	p.P536	0.005	NULL	HMMPfam_ASC,PatternScan_ASC	-	no_errors
ALDH1A1	216	genome.wustl.edu	37	9	75540496	75540496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	9	75540496	75540496	C	T	SNP	ALDH1A1	NM_000689.3	human	genbank	58_37c	-1	reviewed	silent	c.537	p.K179	1.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ANO8	57719	genome.wustl.edu	37	19	17436073	17436074	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	19	17436073	17436074	CT	-	DEL	ANO8	NM_020959.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.2784_2783	p.E928fs	0.975:0.978	NULL	HMMPfam_DUF590	-	no_errors
BDP1	55814	genome.wustl.edu	37	5	70793174	70793174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	5	70793174	70793174	C	T	SNP	BDP1	NM_018429.2	human	genbank	58_37c	+1	reviewed	missense	c.1877	p.A626V	1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,PatternScan_DNA_LIGASE_A1	-	no_errors
C3orf1	51300	genome.wustl.edu	37	3	119236093	119236093	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	3	119236093	119236093	C	G	SNP	C3orf1	NM_016589.3	human	genbank	58_37c	+1	validated	missense	c.638	p.S213C	0.000	NULL	NULL	-	no_errors
CEP350	9857	genome.wustl.edu	37	1	180047729	180047729	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	180047729	180047729	G	-	DEL	CEP350	NM_014810.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.5899	p.S1968fs	0.704	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_SSF74924	-	no_errors
CROT	54677	genome.wustl.edu	37	7	86988539	86988539	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	7	86988539	86988539	C	G	SNP	CROT	NM_001143935.1	human	genbank	58_37c	+1	reviewed	missense	c.217	p.Q73E	0.999	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	21115812	21115812	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	16	21115812	21115812	T	C	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	silent	c.2346	p.A782	0.995	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41427655	41427655	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	21	41427655	41427655	T	C	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	missense	c.5032	p.I1678V	0.999	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DUSP16	80824	genome.wustl.edu	37	12	12630859	12630860	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	12630859	12630860	-	G	INS	DUSP16	NM_030640.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.906_905	p.G303fs	0.737:0.915	NULL	HMMPfam_DSPc,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_Rhodanese-like,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799	-	no_errors
FAM48B1	170067	genome.wustl.edu	37	X	24381566	24381566	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	24381566	24381566	T	A	SNP	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	missense	c.689	p.M230K	1.000	NULL	NULL	-	no_errors
FCRL1	115350	genome.wustl.edu	37	1	157767580	157767580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	157767580	157767580	C	T	SNP	FCRL1	ENST00000358292	human	ensembl	58_37c	-1	known	missense	c.1028	p.G343D	0.000	NULL	HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
FRMPD4	9758	genome.wustl.edu	37	X	12734333	12734333	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	12734333	12734333	C	A	SNP	FRMPD4	NM_014728.3	human	genbank	58_37c	+1	reviewed	missense	c.1755	p.S585R	0.016	NULL	PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
GRLF1	2909	genome.wustl.edu	37	19	47492897	47492897	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	19	47492897	47492897	C	T	SNP	GRLF1	NM_004491.4	human	genbank	58_37c	+1	reviewed	missense	c.4001	p.P1334L	1.000	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KL	9365	genome.wustl.edu	37	13	33629465	33629465	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	13	33629465	33629465	A	T	SNP	KL	ENST00000426690	human	ensembl	58_37c	+1	known	missense	c.1612	p.T538S	0.249	NULL	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
KRT1	3848	genome.wustl.edu	37	12	53070227	53070227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	53070227	53070227	G	A	SNP	KRT1	NM_006121.3	human	genbank	58_37c	-1	reviewed	missense	c.1307	p.A436V	1.000	superfamily_Prefoldin,HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LMOD1	25802	genome.wustl.edu	37	1	201869751	201869751	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	201869751	201869751	T	C	SNP	LMOD1	NM_012134.2	human	genbank	58_37c	-1	reviewed	silent	c.390	p.L130	0.034	HMMPfam_Tropomodulin	HMMSmart_WH2,HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
LOC144571	0	genome.wustl.edu	37	12	9220358	9220359	+	RNA	INS	-	-	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	9220358	9220359	-	T	INS	LOC144571	NR_026971.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
MAP3K4	4216	genome.wustl.edu	37	6	161470644	161470644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	6	161470644	161470644	C	T	SNP	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	missense	c.1340	p.T447I	0.039	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MFN2	9927	genome.wustl.edu	37	1	12062055	12062055	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	12062055	12062055	C	A	SNP	MFN2	NM_001127660.1	human	genbank	58_37c	+1	reviewed	missense	c.1055	p.S352Y	1.000	NULL	HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAA10	0	genome.wustl.edu	37	X	153197829	153197829	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	153197829	153197829	G	T	SNP	NAA10	NM_003491.2	human	genbank	58_37c	-1	provisional	missense	c.281	p.A94D	1.000	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
OLFM4	10562	genome.wustl.edu	37	13	53624378	53624378	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	13	53624378	53624378	C	A	SNP	OLFM4	NM_006418.3	human	genbank	58_37c	+1	reviewed	missense	c.1005	p.N335K	0.006	HMMPfam_OLF,HMMSmart_OLF	HMMPfam_OLF,HMMSmart_OLF	-	no_errors
PCDH15	65217	genome.wustl.edu	37	10	55912885	55912885	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	10	55912885	55912885	C	A	SNP	PCDH15	NM_001142763.1	human	genbank	58_37c	-1	reviewed	missense	c.1774	p.D592Y	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRPF3	9129	genome.wustl.edu	37	1	150307447	150307447	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	150307447	150307447	T	C	SNP	PRPF3	NM_004698.2	human	genbank	58_37c	+1	reviewed	missense	c.770	p.I257T	1.000	NULL	HMMPfam_PWI,HMMSmart_SM00311,HMMPfam_PRP3,superfamily_PWI domain	-	no_errors
PTPN5	84867	genome.wustl.edu	37	11	18764870	18764870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	11	18764870	18764870	G	A	SNP	PTPN5	NM_006906.1	human	genbank	58_37c	-1	validated	missense	c.398	p.T133M	0.037	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RNF123	63891	genome.wustl.edu	37	3	49750025	49750025	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	3	49750025	49750025	C	A	SNP	RNF123	NM_022064.2	human	genbank	58_37c	+1	reviewed	silent	c.2610	p.A870	1.000	NULL	HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SATB2	23314	genome.wustl.edu	37	2	200137254	200137254	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	2	200137254	200137254	T	A	SNP	SATB2	NM_015265.3	human	genbank	58_37c	-1	reviewed	missense	c.1882	p.I628F	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like	-	no_errors
SDK1	221935	genome.wustl.edu	37	7	4011199	4011199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	7	4011199	4011199	C	T	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	missense	c.1816	p.R606C	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SLC13A2	9058	genome.wustl.edu	37	17	26817851	26817851	+	Silent	SNP	C	C	T	rs192486018	by1000genomes	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	17	26817851	26817851	C	T	SNP	SLC13A2	NM_003984.3	human	genbank	58_37c	+1	validated	silent	c.501	p.N167	0.000	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
SLC5A12	159963	genome.wustl.edu	37	11	26725447	26725447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	11	26725447	26725447	G	A	SNP	SLC5A12	NM_178498.3	human	genbank	58_37c	-1	validated	silent	c.573	p.V191	0.994	HMMPfam_SSF	HMMPfam_SSF	-	no_errors
SMCR8	140775	genome.wustl.edu	37	17	18220579	18220579	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	17	18220579	18220579	C	A	SNP	SMCR8	NM_144775.2	human	genbank	58_37c	+1	validated	missense	c.1476	p.S492R	1.000	NULL	NULL	-	no_errors
STARD8	9754	genome.wustl.edu	37	X	67937329	67937329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	X	67937329	67937329	G	T	SNP	STARD8	NM_001142503.2	human	genbank	58_37c	+1	reviewed	missense	c.573	p.Q191H	0.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,superfamily_Bet v1-like	-	no_errors
TTL	150465	genome.wustl.edu	37	2	113277954	113277954	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	2	113277954	113277954	A	G	SNP	TTL	NM_153712.4	human	genbank	58_37c	+1	validated	missense	c.971	p.E324G	1.000	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
WSCD2	9671	genome.wustl.edu	37	12	108642028	108642028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	12	108642028	108642028	C	A	SNP	WSCD2	NM_014653.2	human	genbank	58_37c	+1	validated	missense	c.1606	p.Q536K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_WSC,HMMSmart_SM00321,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZCCHC6	79670	genome.wustl.edu	37	9	88961237	88961241	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	CTCTC	CTCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	9	88961237	88961241	CTCTC	-	DEL	ZCCHC6	NM_024617.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.679_675	p.R226fs	1.000:0.998:1.000:0.969:0.463	NULL	HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Retrovirus zinc finger-like domains,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
ZFYVE9	9372	genome.wustl.edu	37	1	52704506	52704509	+	Frame_Shift_Del	DEL	TATC	TATC	-	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	TATC	TATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	1	52704506	52704509	TATC	-	DEL	ZFYVE9	NM_004799.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1417_1420	p.S475fs	0.923:0.916:0.906:0.903	NULL	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger	-	no_errors
ZNF354C	30832	genome.wustl.edu	37	5	178503490	178503490	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	5	178503490	178503490	C	T	SNP	ZNF354C	NM_014594.1	human	genbank	58_37c	+1	provisional	silent	c.72	p.D24	0.590	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF74	7625	genome.wustl.edu	37	22	20759967	20759967	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IC-01A-11W-A050-09	TCGA-B6-A0IC-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f23fd730-0a18-4e3b-a2ed-f1a4231c2b53	4882294f-dbab-4a58-a2b9-aa53b02158f7	22	20759967	20759967	C	G	SNP	ZNF74	NM_003426.2	human	genbank	58_37c	+1	validated	missense	c.644	p.A215G	0.000	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
