Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARFGAP3	26286	genome.wustl.edu	37	22	43227644	43227644	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	22	43227644	43227644	T	G	SNP	ARFGAP3	NM_014570.4	human	genbank	58_37c	-1	reviewed	splice_site	c.478-2	e6-2	0.984	-	-	-	no_errors
BBS7	55212	genome.wustl.edu	37	4	122776652	122776652	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	122776652	122776652	C	A	SNP	BBS7	NM_176824.1	human	genbank	58_37c	-1	reviewed	missense	c.593	p.G198V	1.000	NULL	NULL	-	no_errors
BCAT2	587	genome.wustl.edu	37	19	49310293	49310293	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	49310293	49310293	C	G	SNP	BCAT2	NM_001190.3	human	genbank	58_37c	-1	reviewed	silent	c.63	p.L21	0.739	NULL	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
C13orf26	122046	genome.wustl.edu	37	13	31543174	31543174	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	13	31543174	31543174	T	C	SNP	C13orf26	NM_152325.1	human	genbank	58_37c	+1	predicted	missense	c.799	p.S267P	0.982	NULL	NULL	-	no_errors
C21orf129	150135	genome.wustl.edu	37	21	43133777	43133777	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	21	43133777	43133777	G	T	SNP	C21orf129	NR_027272.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.002	-	-	-	no_errors
C22orf33	339669	genome.wustl.edu	37	22	37387521	37387521	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	22	37387521	37387521	C	-	DEL	C22orf33	NM_178552.3	human	genbank	58_37c	-1	validated	splice_site_del	c.490+1	e3+1	1.000	-	-	-	no_errors
CACNA1G	8913	genome.wustl.edu	37	17	48668853	48668853	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	48668853	48668853	C	A	SNP	CACNA1G	NM_018896.3	human	genbank	58_37c	+1	validated	silent	c.2511	p.R837	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
CHD8	57680	genome.wustl.edu	37	14	21862192	21862192	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	21862192	21862192	G	T	SNP	CHD8	NM_020920.3	human	genbank	58_37c	-1	reviewed	missense	c.4925	p.P1642H	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CIT	11113	genome.wustl.edu	37	12	120151420	120151420	+	Missense_Mutation	SNP	G	G	T	rs138756427	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	120151420	120151420	G	T	SNP	CIT	NM_007174.1	human	genbank	58_37c	-1	validated	missense	c.4214	p.T1405K	1.000	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain	HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_CPSASE_2,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
CLEC10A	10462	genome.wustl.edu	37	17	6978532	6978532	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	6978532	6978532	C	A	SNP	CLEC10A	NM_182906.2	human	genbank	58_37c	-1	reviewed	missense	c.792	p.K264N	0.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Lectin_N,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CUBN	8029	genome.wustl.edu	37	10	16893319	16893322	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	ACAG	ACAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	16893319	16893322	ACAG	-	DEL	CUBN	NM_001081.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.9578_9575	p.P3192fs	0.575:0.554:0.546:0.993	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
CYP4X1	260293	genome.wustl.edu	37	1	47505115	47505115	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	47505115	47505115	C	A	SNP	CYP4X1	NM_178033.1	human	genbank	58_37c	+1	reviewed	silent	c.984	p.I328	1.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DCAF17	80067	genome.wustl.edu	37	2	172336674	172336674	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	172336674	172336674	A	C	SNP	DCAF17	NM_025000.3	human	genbank	58_37c	+1	reviewed	missense	c.1393	p.S465R	1.000	NULL	NULL	-	no_errors
DCAF8L2	347442	genome.wustl.edu	37	X	27765438	27765438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	27765438	27765438	G	A	SNP	DCAF8L2	NM_001136533.1	human	genbank	58_37c	+1	provisional	silent	c.426	p.E142	0.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DDX11	1663	genome.wustl.edu	37	12	31256888	31256888	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	31256888	31256888	G	A	SNP	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	missense	c.2834	p.R945K	0.000	NULL	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DLG1	1739	genome.wustl.edu	37	3	196857476	196857476	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	196857476	196857476	C	A	SNP	DLG1	NM_004087.2	human	genbank	58_37c	-1	validated	missense	c.1186	p.D396Y	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_L27_1,HMMPfam_PDZ_assoc,HMMPfam_Gua_kin_assoc_C,HMMPfam_MAGUK_N_PEST,PatternScan_GUANYLATE_KINASE_1,superfamily_L27 domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EDEM3	80267	genome.wustl.edu	37	1	184681731	184681731	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	184681731	184681731	T	G	SNP	EDEM3	NM_025191.3	human	genbank	58_37c	-1	validated	missense	c.1372	p.M458L	1.000	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	PatternScan_ER_TARGET,HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,HMMPfam_PA,superfamily_SSF52025	-	no_errors
ERBB2IP	55914	genome.wustl.edu	37	5	65372231	65372231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	65372231	65372231	G	A	SNP	ERBB2IP	NM_018695.2	human	genbank	58_37c	+1	reviewed	missense	c.3928	p.D1310N	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
ERF	2077	genome.wustl.edu	37	19	42753286	42753286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42753286	42753286	G	A	SNP	ERF	NM_006494.2	human	genbank	58_37c	-1	validated	silent	c.978	p.L326	1.000	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115982	8115983	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	8115982	8115983	-	T	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1331_1332	p.*445fs	1.000:0.913	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
HERC1	8925	genome.wustl.edu	37	15	64017562	64017562	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	15	64017562	64017562	T	A	SNP	HERC1	NM_003922.3	human	genbank	58_37c	-1	reviewed	missense	c.3497	p.E1166V	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
IGF2R	3482	genome.wustl.edu	37	6	160500677	160500677	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	160500677	160500677	A	G	SNP	IGF2R	NM_000876.2	human	genbank	58_37c	+1	reviewed	silent	c.5544	p.G1848	0.973	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain	HMMPfam_CIMR,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Mannose 6-phosphate receptor domain,superfamily_Kringle-like	-	no_errors
IGSF8	93185	genome.wustl.edu	37	1	160064882	160064882	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	160064882	160064882	A	C	SNP	IGSF8	NM_052868.2	human	genbank	58_37c	-1	provisional	missense	c.219	p.D73E	0.001	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
JARID2	3720	genome.wustl.edu	37	6	15374373	15374373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	15374373	15374373	C	T	SNP	JARID2	NM_004973.2	human	genbank	58_37c	+1	reviewed	missense	c.71	p.S24L	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,HMMPfam_JmjC	-	no_errors
KIAA1919	91749	genome.wustl.edu	37	6	111587599	111587599	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	111587599	111587599	T	G	SNP	KIAA1919	NM_153369.2	human	genbank	58_37c	+1	validated	missense	c.834	p.F278L	0.998	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
KIF17	57576	genome.wustl.edu	37	1	21009211	21009211	+	Missense_Mutation	SNP	C	C	T	rs139817126	byFrequency	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	21009211	21009211	C	T	SNP	KIF17	NM_020816.2	human	genbank	58_37c	-1	validated	missense	c.2398	p.V800I	0.999	NULL	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KPNB1	3837	genome.wustl.edu	37	17	45754386	45754386	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	45754386	45754386	G	C	SNP	KPNB1	ENST00000290158	human	ensembl	58_37c	+1	known	missense	c.1996	p.V666L	1.000	superfamily_ARM repeat	HMMSmart_SM00185,HMMPfam_HEAT,HMMPfam_IBN_N,superfamily_ARM repeat	-	no_errors
KRTAP9-7	0	genome.wustl.edu	37	17	39432019	39432019	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	39432019	39432019	G	A	SNP	KRTAP9-7	ENST00000391354	human	ensembl	58_37c	+1	known	missense	c.70	p.V24M	0.028	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LAS1L	81887	genome.wustl.edu	37	X	64734716	64734716	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	64734716	64734716	T	A	SNP	LAS1L	NM_031206.4	human	genbank	58_37c	-1	validated	missense	c.2065	p.T689S	0.000	NULL	HMMPfam_Las1	-	no_errors
LRIG3	121227	genome.wustl.edu	37	12	59283825	59283825	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	59283825	59283825	G	C	SNP	LRIG3	NM_153377.3	human	genbank	58_37c	-1	provisional	missense	c.612	p.I204M	0.976	HMMSmart_SM00369,superfamily_RNI-like	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00365,superfamily_Immunoglobulin,superfamily_RNI-like	-	no_errors
LRRC16B	90668	genome.wustl.edu	37	14	24538364	24538364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	24538364	24538364	G	A	SNP	LRRC16B	NM_138360.3	human	genbank	58_37c	+1	validated	missense	c.4001	p.R1334Q	0.968	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
MAN2B1	4125	genome.wustl.edu	37	19	12768878	12768878	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12768878	12768878	G	C	SNP	MAN2B1	NM_000528.3	human	genbank	58_37c	-1	reviewed	silent	c.1308	p.L436	0.998	HMMPfam_Alpha-mann_mid,superfamily_SSF88688	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MAN2B1	4125	genome.wustl.edu	37	19	12769137	12769137	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769137	12769137	G	C	SNP	MAN2B1	NM_000528.3	human	genbank	58_37c	-1	reviewed	missense	c.1131	p.F377L	1.000	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MAN2B1	4125	genome.wustl.edu	37	19	12769247	12769247	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769247	12769247	G	A	SNP	MAN2B1	NM_000528.3	human	genbank	58_37c	-1	reviewed	silent	c.1104	p.L368	1.000	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MCM4	4173	genome.wustl.edu	37	8	48878885	48878885	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	48878885	48878885	A	T	SNP	MCM4	NM_005914.2	human	genbank	58_37c	+1	reviewed	missense	c.971	p.E324V	1.000	HMMSmart_MCM,superfamily_Nucleic_acid_OB	HMMPfam_MCM,HMMSmart_MCM,HMMSmart_AAA,superfamily_Nucleic_acid_OB,PatternScan_MCM_1,superfamily_SSF52540	-	no_errors
MLXIP	22877	genome.wustl.edu	37	12	122617979	122617979	+	Missense_Mutation	SNP	C	C	G	rs186648555	by1000genomes	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	122617979	122617979	C	G	SNP	MLXIP	ENST00000319080	human	ensembl	58_37c	+1	known	missense	c.1177	p.H393D	0.074	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
MMAA	166785	genome.wustl.edu	37	4	146560633	146560633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	146560633	146560633	G	T	SNP	MMAA	NM_172250.2	human	genbank	58_37c	+1	reviewed	missense	c.342	p.R114S	1.000	HMMPfam_ArgK	HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MTOR	2475	genome.wustl.edu	37	1	11193225	11193225	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	11193225	11193225	A	C	SNP	MTOR	NM_004958.3	human	genbank	58_37c	-1	reviewed	missense	c.5276	p.L1759R	1.000	HMMPfam_FAT,superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9091544	9091544	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	9091544	9091544	A	G	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.271	p.S91P	0.002	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NIPAL4	348938	genome.wustl.edu	37	5	156899862	156899862	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	156899862	156899862	C	A	SNP	NIPAL4	NM_001099287.1	human	genbank	58_37c	+1	reviewed	missense	c.1295	p.P432H	0.991	NULL	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
NR2C2	7182	genome.wustl.edu	37	3	15065706	15065706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	15065706	15065706	G	A	SNP	NR2C2	NM_003298.3	human	genbank	58_37c	+1	validated	silent	c.846	p.T282	0.230	superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123630873	123630873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	123630873	123630873	C	T	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	missense	c.3688	p.E1230K	1.000	superfamily_SSF101898	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
OR13C8	138802	genome.wustl.edu	37	9	107331596	107331596	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107331596	107331596	A	G	SNP	OR13C8	NM_001004483.1	human	genbank	58_37c	+1	provisional	missense	c.148	p.I50V	0.046	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR8H2	390151	genome.wustl.edu	37	11	55872586	55872586	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	11	55872586	55872586	A	G	SNP	OR8H2	NM_001005200.1	human	genbank	58_37c	+1	provisional	missense	c.68	p.E23G	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PDE4DIP	9659	genome.wustl.edu	37	1	144882723	144882723	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	144882723	144882723	T	G	SNP	PDE4DIP	NM_014644.4	human	genbank	58_37c	-1	validated	missense	c.3296	p.Q1099P	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors
PGLS	25796	genome.wustl.edu	37	19	17627089	17627089	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	17627089	17627089	G	A	SNP	PGLS	NM_012088.2	human	genbank	58_37c	+1	validated	silent	c.396	p.Q132	1.000	HMMPfam_Glucosamine_iso,superfamily_SSF100950	HMMPfam_Glucosamine_iso,superfamily_SSF100950	-	no_errors
PLK2	10769	genome.wustl.edu	37	5	57751437	57751452	+	Frame_Shift_Del	DEL	GTACCCAAAGCCATAT	GTACCCAAAGCCATAT	-	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	GTACCCAAAGCCATAT	GTACCCAAAGCCATAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	57751437	57751452	GTACCCAAAGCCATAT	-	DEL	PLK2	NM_006622.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1554_1539	p.K513fs	1.000:1.000:1.000:0.954:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.465:0.999:1.000:0.994	HMMPfam_POLO_box,superfamily_SSF82615	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_POLO_box,superfamily_SSF82615	-	no_errors
PRDM15	63977	genome.wustl.edu	37	21	43291676	43291676	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	21	43291676	43291676	C	-	DEL	PRDM15	NM_022115.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.468	p.N157fs	0.000	NULL	HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
PTPRU	10076	genome.wustl.edu	37	1	29652166	29652166	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	29652166	29652166	C	A	SNP	PTPRU	NM_005704.3	human	genbank	58_37c	+1	reviewed	nonsense	c.4334	p.S1445*	0.974	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RAB3GAP2	25782	genome.wustl.edu	37	1	220355687	220355687	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	220355687	220355687	A	C	SNP	RAB3GAP2	NM_012414.3	human	genbank	58_37c	-1	reviewed	missense	c.2222	p.F741C	1.000	NULL	NULL	-	no_errors
RIF1	55183	genome.wustl.edu	37	2	152299782	152299782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	152299782	152299782	G	A	SNP	RIF1	NM_018151.4	human	genbank	58_37c	+1	reviewed	missense	c.1744	p.A582T	1.000	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
RPAP2	79871	genome.wustl.edu	37	1	92789908	92789908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	92789908	92789908	C	T	SNP	RPAP2	ENST00000370343	human	ensembl	58_37c	+1	known	silent	c.1431	p.T477	0.034	NULL	HMMPfam_RPAP2_Rtr1	-	no_errors
RXRG	6258	genome.wustl.edu	37	1	165398094	165398094	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	165398094	165398094	T	G	SNP	RXRG	NM_006917.3	human	genbank	58_37c	-1	reviewed	silent	c.159	p.P53	0.287	NULL	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
SASH1	23328	genome.wustl.edu	37	6	148867225	148867225	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	148867225	148867225	C	T	SNP	SASH1	NM_015278.3	human	genbank	58_37c	+1	validated	silent	c.3423	p.V1141	0.102	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_SH3_2	-	no_errors
SEC31A	22872	genome.wustl.edu	37	4	83795849	83795849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	83795849	83795849	G	A	SNP	SEC31A	NM_001077207.1	human	genbank	58_37c	-1	reviewed	missense	c.554	p.A185V	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
SLCO5A1	81796	genome.wustl.edu	37	8	70585135	70585135	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	70585135	70585135	T	C	SNP	SLCO5A1	NM_030958.2	human	genbank	58_37c	-1	reviewed	missense	c.2516	p.E839G	0.998	NULL	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
TRIM38	10475	genome.wustl.edu	37	6	25973465	25973465	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	25973465	25973465	G	T	SNP	TRIM38	NM_006355.2	human	genbank	58_37c	+1	reviewed	missense	c.826	p.V276F	0.350	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ULK2	9706	genome.wustl.edu	37	17	19700727	19700727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	19700727	19700727	G	A	SNP	ULK2	NM_001142610.1	human	genbank	58_37c	-1	reviewed	silent	c.1791	p.I597	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ZNF526	116115	genome.wustl.edu	37	19	42728940	42728940	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42728940	42728940	G	A	SNP	ZNF526	NM_133444.1	human	genbank	58_37c	+1	provisional	missense	c.385	p.A129T	0.057	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
