Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC4	10257	genome.wustl.edu	37	13	95696580	95696580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	13	95696580	95696580	G	T	SNP	ABCC4	NM_005845.3	human	genbank	58_37c	-1	reviewed	missense	c.3569	p.A1190E	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADAMTS18	170692	genome.wustl.edu	37	16	77353947	77353947	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	77353947	77353947	G	A	SNP	ADAMTS18	NM_199355.2	human	genbank	58_37c	-1	reviewed	silent	c.2331	p.I777	0.842	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANKRD6	22881	genome.wustl.edu	37	6	90276715	90276715	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	90276715	90276715	T	C	SNP	ANKRD6	NM_014942.3	human	genbank	58_37c	+1	validated	missense	c.20	p.V7A	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARRDC2	27106	genome.wustl.edu	37	19	18119536	18119536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	19	18119536	18119536	G	A	SNP	ARRDC2	NM_015683.1	human	genbank	58_37c	+1	validated	silent	c.291	p.T97	0.319	HMMPfam_Arrestin_N,superfamily_E set domains	HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_E set domains	-	no_errors
BSND	7809	genome.wustl.edu	37	1	55474123	55474123	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	55474123	55474123	C	T	SNP	BSND	NM_057176.2	human	genbank	58_37c	+1	reviewed	missense	c.785	p.A262V	0.010	NULL	NULL	-	no_errors
C19orf77	284422	genome.wustl.edu	37	19	3478909	3478909	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	19	3478909	3478909	T	A	SNP	C19orf77	NM_001136503.1	human	genbank	58_37c	-1	validated	missense	c.86	p.K29M	0.971	NULL	NULL	-	no_errors
C1orf112	55732	genome.wustl.edu	37	1	169770035	169770035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	169770035	169770035	A	T	SNP	C1orf112	ENST00000456684	human	ensembl	58_37c	+1	known	missense	c.163	p.I55F	0.828	NULL	NULL	-	no_errors
CCDC135	84229	genome.wustl.edu	37	16	57760088	57760088	+	Missense_Mutation	SNP	C	C	T	rs189601070	by1000genomes	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	57760088	57760088	C	T	SNP	CCDC135	NM_032269.5	human	genbank	58_37c	+1	validated	missense	c.1867	p.R623C	0.993	NULL	NULL	-	no_errors
CDC5L	988	genome.wustl.edu	37	6	44413549	44413549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	44413549	44413549	G	A	SNP	CDC5L	NM_001253.2	human	genbank	58_37c	+1	reviewed	missense	c.2249	p.R750H	0.976	NULL	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding	-	no_errors
CNGB1	1258	genome.wustl.edu	37	16	57994814	57994814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	57994814	57994814	C	T	SNP	CNGB1	NM_001297.4	human	genbank	58_37c	-1	reviewed	missense	c.464	p.G155E	0.001	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like,superfamily_Voltage-gated potassium channels	-	no_errors
COL29A1	256076	genome.wustl.edu	37	3	130095337	130095337	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	3	130095337	130095337	C	A	SNP	COL6A5	NM_153264.5	human	genbank	58_37c	+1	validated	missense	c.325	p.Q109K	0.166	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Collagen,superfamily_SSF53300	-	no_errors
COL4A3	1285	genome.wustl.edu	37	2	228137792	228137792	+	Missense_Mutation	SNP	C	C	T	rs139361545	by1000genomes	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	2	228137792	228137792	C	T	SNP	COL4A3	NM_000091.3	human	genbank	58_37c	+1	reviewed	missense	c.1886	p.T629M	0.465	HMMPfam_Collagen	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like,PatternScan_CARBOXYPEPT_SER_SER	-	no_errors
DCAF11	80344	genome.wustl.edu	37	14	24586235	24586235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	14	24586235	24586235	G	T	SNP	DCAF11	NM_025230.4	human	genbank	58_37c	+1	reviewed	missense	c.265	p.D89Y	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DDX43	55510	genome.wustl.edu	37	6	74123768	74123768	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	74123768	74123768	A	-	DEL	DDX43	NM_018665.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1572	p.D525fs	0.796	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_KH,HMMPfam_DEAD,HMMSmart_DEXDc,HMMPfam_KH_1,superfamily_SSF52540,superfamily_SSF54791	-	no_errors
DGKD	8527	genome.wustl.edu	37	2	234343513	234343513	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	2	234343513	234343513	G	T	SNP	DGKD	NM_152879.2	human	genbank	58_37c	+1	reviewed	silent	c.552	p.L184	0.997	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00454,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
DPEP1	1800	genome.wustl.edu	37	16	89696849	89696849	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	89696849	89696849	G	T	SNP	DPEP1	NM_001128141.1	human	genbank	58_37c	+1	validated	missense	c.31	p.V11L	0.949	NULL	PatternScan_RENAL_DIPEPTIDASE_1,HMMPfam_Peptidase_M19,superfamily_SSF51556	-	no_errors
EFHC1	114327	genome.wustl.edu	37	6	52285258	52285258	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	52285258	52285258	T	G	SNP	EFHC1	NM_018100.3	human	genbank	58_37c	+1	reviewed	missense	c.50	p.F17C	0.944	NULL	HMMSmart_SM00676,HMMPfam_DUF1126,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950470	16950470	+	RNA	SNP	C	C	T	rs12144467	byFrequency	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	16950470	16950470	C	T	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.996	-	-	-	no_errors
ERN1	2081	genome.wustl.edu	37	17	62130285	62130285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	17	62130285	62130285	C	T	SNP	ERN1	NM_001433.3	human	genbank	58_37c	-1	reviewed	missense	c.2108	p.G703D	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111503	8111503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	10	8111503	8111503	G	A	SNP	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	missense	c.992	p.R331K	1.000	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111506	8111507	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	10	8111506	8111507	AT	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.995_996	p.N332fs	1.000:0.872	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GPR116	221395	genome.wustl.edu	37	6	46826804	46826804	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	46826804	46826804	T	C	SNP	GPR116	NM_001098518.1	human	genbank	58_37c	-1	validated	missense	c.2836	p.S946G	0.000	NULL	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_EGF_2,HMMPfam_ig,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Immunoglobulin,superfamily_SEA domain	-	no_errors
IFT80	57560	genome.wustl.edu	37	3	160000320	160000320	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	3	160000320	160000320	G	A	SNP	IFT80	NM_020800.1	human	genbank	58_37c	-1	validated	missense	c.1462	p.L488F	1.000	superfamily_Cyt_cd1_haem_C	HMMSmart_WD40,superfamily_WD40_like,superfamily_Cyt_cd1_haem_C,HMMPfam_WD40	-	no_errors
IYD	389434	genome.wustl.edu	37	6	150710610	150710610	+	Missense_Mutation	SNP	C	C	T	rs121918138	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	6	150710610	150710610	C	T	SNP	IYD	NM_203395.2	human	genbank	58_37c	+1	reviewed	missense	c.301	p.R101W	1.000	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like	-	no_errors
KCNB2	9312	genome.wustl.edu	37	8	73480344	73480344	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	8	73480344	73480344	C	A	SNP	KCNB2	NM_004770.2	human	genbank	58_37c	+1	reviewed	nonsense	c.375	p.Y125*	1.000	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Kv2channel,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KCNMB2	10242	genome.wustl.edu	37	3	178560678	178560678	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	3	178560678	178560678	C	T	SNP	KCNMB2	NM_005832.3	human	genbank	58_37c	+1	reviewed	nonsense	c.661	p.Q221*	1.000	HMMPfam_CaKB	HMMPfam_CaKB,HMMPfam_KcnmB2_inactiv	-	no_errors
L1CAM	3897	genome.wustl.edu	37	X	153134145	153134145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	153134145	153134145	G	A	SNP	L1CAM	NM_000425.3	human	genbank	58_37c	-1	reviewed	missense	c.1417	p.R473C	0.741	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MRAP	56246	genome.wustl.edu	37	21	33686921	33686921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	21	33686921	33686921	C	G	SNP	MRAP	NM_206898.1	human	genbank	58_37c	+1	reviewed	missense	c.266	p.S89C	0.000	NULL	NULL	-	no_errors
NF2	4771	genome.wustl.edu	37	22	30054223	30054223	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	22	30054223	30054223	G	C	SNP	NF2	NM_000268.3	human	genbank	58_37c	+1	reviewed	missense	c.645	p.E215D	1.000	PatternScan_FERM_2,HMMPfam_FERM_M,HMMSmart_SM00295,superfamily_PH domain-like	superfamily_Moesin tail domain,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
RANBP17	64901	genome.wustl.edu	37	5	170336737	170336737	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	5	170336737	170336737	G	A	SNP	RANBP17	NM_022897.2	human	genbank	58_37c	+1	provisional	missense	c.562	p.V188I	1.000	superfamily_ARM repeat	HMMPfam_IBN_N,superfamily_ARM repeat	-	no_errors
RB1	5925	genome.wustl.edu	37	13	48936989	48936989	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	13	48936989	48936989	C	-	DEL	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.757	p.R254fs	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114424941	114424941	+	Missense_Mutation	SNP	G	G	A	rs62601530	byCluster;by1000genomes	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	114424941	114424941	G	A	SNP	RBMXL3	NM_001145346.1	human	genbank	58_37c	+1	validated	missense	c.937	p.A313T	0.001	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
SCN1A	6323	genome.wustl.edu	37	2	166900252	166900252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	2	166900252	166900252	G	T	SNP	SCN1A	NM_006920.4	human	genbank	58_37c	-1	reviewed	missense	c.1970	p.P657H	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324	-	no_errors
SETD8	387893	genome.wustl.edu	37	12	123892232	123892232	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	12	123892232	123892232	C	A	SNP	SETD8	NM_020382.3	human	genbank	58_37c	+1	validated	missense	c.1041	p.H347Q	1.000	NULL	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199	-	no_errors
SLC9A6	10479	genome.wustl.edu	37	X	135112303	135112303	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	135112303	135112303	T	C	SNP	SLC9A6	NM_001042537.1	human	genbank	58_37c	+1	reviewed	silent	c.1629	p.D543	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16261573	16261573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	1	16261573	16261573	G	A	SNP	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	silent	c.8838	p.Q2946	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
SSTR4	6754	genome.wustl.edu	37	20	23016498	23016498	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	20	23016498	23016498	C	T	SNP	SSTR4	NM_001052.2	human	genbank	58_37c	+1	validated	silent	c.378	p.D126	0.981	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SULT1E1	6783	genome.wustl.edu	37	4	70707775	70707775	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	4	70707775	70707775	T	C	SNP	SULT1E1	ENST00000506796	human	ensembl	58_37c	-1	known	missense	c.320	p.N107S	0.663	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TRRAP	8295	genome.wustl.edu	37	7	98529083	98529083	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	7	98529083	98529083	G	A	SNP	TRRAP	NM_003496.2	human	genbank	58_37c	+1	validated	missense	c.3647	p.R1216Q	1.000	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_errors
ZNF41	7592	genome.wustl.edu	37	X	47307013	47307013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	X	47307013	47307013	T	C	SNP	ZNF41	NM_007130.2	human	genbank	58_37c	-1	reviewed	missense	c.2156	p.Y719C	0.600	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF414	84330	genome.wustl.edu	37	19	8577297	8577297	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	19	8577297	8577297	C	A	SNP	ZNF414	NM_032370.2	human	genbank	58_37c	-1	validated	silent	c.504	p.L168	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF423	23090	genome.wustl.edu	37	16	49671762	49671762	+	Missense_Mutation	SNP	G	G	A	rs142517429	byFrequency	TCGA-BH-A0C7-01B-11D-A10Y-09	TCGA-BH-A0C7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	ba3b30c5-8179-49bd-aacd-53326bf356f8	c31039db-bf46-4da7-95de-7c89adfcee4a	16	49671762	49671762	G	A	SNP	ZNF423	NM_015069.2	human	genbank	58_37c	-1	reviewed	missense	c.1301	p.A434V	0.705	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
