Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADNP	0	genome.wustl.edu	37	20	49509507	49509508	+	Frame_Shift_Ins	INS	-	-	GTAA	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	20	49509507	49509508	-	GTAA	INS	ADNP	NM_015339.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1744_1743	p.H581fs	1.000:0.989	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
AQP7	0	genome.wustl.edu	37	9	33387011	33387011	+	Missense_Mutation	SNP	C	C	A	rs140405277	byFrequency	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	9	33387011	33387011	C	A	SNP	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	missense	c.224	p.G75V	1.000	HMMPfam_MIP,superfamily_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ASPHD1	0	genome.wustl.edu	37	16	29912802	29912803	+	In_Frame_Ins	INS	-	-	GGT	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	29912802	29912803	-	GGT	INS	ASPHD1	NM_181718.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.510_511	p.172in_frame_insG	1.000:1.000	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
BCL9L	0	genome.wustl.edu	37	11	118779066	118779066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	118779066	118779066	C	T	SNP	BCL9L	NM_182557.2	human	genbank	58_37c	-1	validated	missense	c.325	p.G109S	1.000	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
C2orf18	0	genome.wustl.edu	37	2	26997949	26997949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	26997949	26997949	C	T	SNP	C2orf18	NM_017877.3	human	genbank	58_37c	+1	validated	missense	c.188	p.A63V	0.999	superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
CASZ1	0	genome.wustl.edu	37	1	10714015	10714015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	10714015	10714015	G	A	SNP	CASZ1	NM_001079843.1	human	genbank	58_37c	-1	validated	missense	c.2099	p.S700L	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CBFB	0	genome.wustl.edu	37	16	67100608	67100608	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	67100608	67100608	T	G	SNP	CBFB	NM_022845.2	human	genbank	58_37c	+1	reviewed	missense	c.306	p.I102M	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CDH8	0	genome.wustl.edu	37	16	62055218	62055218	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	62055218	62055218	A	G	SNP	CDH8	NM_001796.2	human	genbank	58_37c	-1	reviewed	silent	c.90	p.A30	1.000	NULL	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DMD	0	genome.wustl.edu	37	X	31200940	31200940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	31200940	31200940	C	T	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.9889	p.V3297I	1.000	HMMPfam_efhand_2,superfamily_EF-hand	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537258	88537258	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	4	88537258	88537258	T	C	SNP	DSPP	ENST00000432448	human	ensembl	58_37c	+1	known	missense	c.1844	p.V615A	0.629	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_OPT,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1	HMMPfam_Nitroreductase,HMMPfam_COX1,HMMPfam_DUF81,HMMPfam_Peptidase_M20,HMMPfam_CitMHS,HMMPfam_C4dic_mal_tran,HMMPfam_OPT,HMMPfam_TerC,HMMPfam_Na_H_Exchanger,HMMPfam_MFS_1,HMMPfam_DUF2339	-	no_start_codon:no_stop_codon
EML3	0	genome.wustl.edu	37	11	62378386	62378386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	62378386	62378386	G	A	SNP	EML3	ENST00000394776	human	ensembl	58_37c	-1	known	missense	c.514	p.R172C	0.252	NULL	HMMSmart_SM00320,HMMPfam_HELP,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000198786	0	genome.wustl.edu	37	MT	13096	13096	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	MT	13096	13096	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.760	p.V254M	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000224343	0	genome.wustl.edu	37	6	160133516	160133517	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	160133516	160133517	-	C	INS	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	frame_shift_ins	c.62_61	p.L21fs	0.013:0.012	NULL	NULL	-	no_start_codon
ENSG00000249164	0	genome.wustl.edu	37	11	74693983	74693983	+	RNA	SNP	A	G	G	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	74693983	74693983	A	G	SNP	ENSG00000249164	ENST00000507626	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
GON4L	0	genome.wustl.edu	37	1	155734834	155734834	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	155734834	155734834	G	A	SNP	GON4L	NM_001037533.1	human	genbank	58_37c	-1	validated	missense	c.4430	p.S1477L	1.000	NULL	HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like	-	no_errors
HIST1H2AM	0	genome.wustl.edu	37	6	27860804	27860804	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	27860804	27860804	C	A	SNP	HIST1H2AM	NM_003514.2	human	genbank	58_37c	-1	reviewed	nonsense	c.124	p.E42*	0.917	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IKZF3	0	genome.wustl.edu	37	17	37988354	37988354	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	37988354	37988354	C	A	SNP	IKZF3	NM_012481.3	human	genbank	58_37c	-1	reviewed	missense	c.58	p.A20S	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
IMP5	0	genome.wustl.edu	37	17	43922347	43922347	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	43922347	43922347	C	T	SNP	IMP5	NM_175882.2	human	genbank	58_37c	+1	validated	silent	c.75	p.G25	0.850	NULL	HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
INO80	0	genome.wustl.edu	37	15	41388029	41388029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	15	41388029	41388029	G	A	SNP	INO80	NM_017553.1	human	genbank	58_37c	-1	reviewed	missense	c.241	p.L81F	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KCNQ5	0	genome.wustl.edu	37	6	73787578	73787578	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	73787578	73787578	T	C	SNP	KCNQ5	NM_019842.3	human	genbank	58_37c	+1	reviewed	missense	c.886	p.S296P	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels	-	no_errors
LAMA1	0	genome.wustl.edu	37	18	6961630	6961630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	18	6961630	6961630	G	A	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	silent	c.7581	p.L2527	0.618	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LASS1	0	genome.wustl.edu	37	19	18994907	18994907	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	18994907	18994907	G	A	SNP	LASS1	NM_021267.3	human	genbank	58_37c	-1	reviewed	silent	c.579	p.S193	1.000	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724	-	no_errors
LOC100132306	0	genome.wustl.edu	37	1	149647112	149647112	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	149647112	149647112	C	G	SNP	LOC100132306	XR_037921.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MAGEA4	0	genome.wustl.edu	37	X	151092941	151092941	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	151092941	151092941	C	T	SNP	MAGEA4	NM_001011548.1	human	genbank	58_37c	+1	reviewed	missense	c.805	p.R269C	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGI1	0	genome.wustl.edu	37	3	65425560	65425561	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	65425560	65425561	-	CTG	INS	MAGI1	NM_001033057.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1264_1263	p.421in_frame_insQ	0.208:0.001	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MEF2B	0	genome.wustl.edu	37	19	19257410	19257410	+	Missense_Mutation	SNP	G	G	A	rs142032500	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	19257410	19257410	G	A	SNP	MEF2B	ENST00000409447	human	ensembl	58_37c	-1	known	missense	c.730	p.R244W	0.001	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506453	195506453	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	195506453	195506453	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11614	p.P3872S	0.001	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NPAT	0	genome.wustl.edu	37	11	108032567	108032567	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	108032567	108032567	C	T	SNP	NPAT	NM_002519.2	human	genbank	58_37c	-1	validated	silent	c.3246	p.K1082	0.035	NULL	HMMSmart_SM00667	-	no_errors
PPP3R1	0	genome.wustl.edu	37	2	68413703	68413703	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	68413703	68413703	C	T	SNP	PPP3R1	NM_000945.3	human	genbank	58_37c	-1	validated	missense	c.362	p.G121E	1.000	superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SERPINF2	0	genome.wustl.edu	37	17	1650702	1650702	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	1650702	1650702	T	C	SNP	SERPINF2	NM_000934.3	human	genbank	58_37c	+1	reviewed	missense	c.611	p.I204T	1.000	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SETD5	0	genome.wustl.edu	37	3	9495453	9495453	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	9495453	9495453	A	G	SNP	SETD5	NM_001080517.1	human	genbank	58_37c	+1	provisional	missense	c.2377	p.M793V	1.000	NULL	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
TBL1XR1	0	genome.wustl.edu	37	3	176769295	176769296	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	176769295	176769296	-	TA	INS	TBL1XR1	NM_024665.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.424_423	p.A141fs	1.000:1.000	NULL	HMMSmart_WD40,HMMSmart_LisH,superfamily_WD40_like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TNXB	0	genome.wustl.edu	37	6	32024600	32024600	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	32024600	32024600	T	C	SNP	TNXB	NM_019105.6	human	genbank	58_37c	-1	reviewed	missense	c.7906	p.M2636V	0.875	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
UNC5CL	0	genome.wustl.edu	37	6	40996170	40996170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	40996170	40996170	C	T	SNP	UNC5CL	NM_173561.1	human	genbank	58_37c	-1	provisional	missense	c.1499	p.G500D	0.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,superfamily_DEATH_like	-	no_errors
