Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA13	154664	genome.wustl.edu	37	7	48314760	48314760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	48314760	48314760	C	T	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	missense	c.5497	p.R1833W	0.003	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCB5	340273	genome.wustl.edu	37	7	20721141	20721141	+	Missense_Mutation	SNP	G	G	A	rs147800155	by1000genomes	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	20721141	20721141	G	A	SNP	ABCB5	NM_178559.5	human	genbank	58_37c	+1	validated	missense	c.386	p.R129Q	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160059168	160059168	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	160059168	160059168	A	G	SNP	ATP10B	NM_025153.2	human	genbank	58_37c	-1	validated	missense	c.1588	p.S530P	0.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
C2orf58	285154	genome.wustl.edu	37	2	38408256	38408256	+	RNA	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	38408256	38408256	G	A	SNP	C2orf58	NR_027252.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
C5orf25	375484	genome.wustl.edu	37	5	175717093	175717093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	175717093	175717093	G	A	SNP	C5orf25	ENST00000420396	human	ensembl	58_37c	+1	known	missense	c.509	p.S170N	0.986	NULL	NULL	-	no_errors
CACHD1	57685	genome.wustl.edu	37	1	65124496	65124496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	65124496	65124496	C	T	SNP	CACHD1	NM_020925.2	human	genbank	58_37c	+1	validated	missense	c.1738	p.R580W	1.000	NULL	"HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_""Winged helix"" DNA-binding domain,superfamily_vWA-like"	-	no_errors
CAP2	10486	genome.wustl.edu	37	6	17421790	17421790	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	6	17421790	17421790	G	T	SNP	CAP2	NM_006366.2	human	genbank	58_37c	+1	reviewed	missense	c.4	p.A2S	0.999	NULL	HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_CAP_1,PatternScan_CAP_2,PatternScan_ADH_IRON_2	-	no_errors
CCNB3	85417	genome.wustl.edu	37	X	50090648	50090648	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	50090648	50090648	A	G	SNP	CCNB3	NM_033031.2	human	genbank	58_37c	+1	reviewed	silent	c.3834	p.T1278	0.815	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like	HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors
CLIP4	79745	genome.wustl.edu	37	2	29386783	29386783	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	29386783	29386783	A	T	SNP	CLIP4	NM_024692.4	human	genbank	58_37c	+1	validated	nonsense	c.1621	p.R541*	1.000	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Cap-Gly domain	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34254255	34254255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	34254255	34254255	G	A	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.1489	p.L497F	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
DNAH10	196385	genome.wustl.edu	37	12	124349182	124349182	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	124349182	124349182	G	A	SNP	DNAH10	NM_207437.3	human	genbank	58_37c	+1	validated	missense	c.6595	p.E2199K	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPYSL5	56896	genome.wustl.edu	37	2	27154529	27154529	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	27154529	27154529	C	T	SNP	DPYSL5	NM_020134.3	human	genbank	58_37c	+1	validated	missense	c.691	p.R231C	1.000	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	-	no_errors
ENSG00000247002	0	genome.wustl.edu	37	20	418348	418348	+	RNA	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	20	418348	418348	G	A	SNP	TBC1D20	ENST00000461188	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-418348	NULL	0.010	-	-	-	no_coding_region
ESRRG	2104	genome.wustl.edu	37	1	216850754	216850754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	216850754	216850754	G	T	SNP	ESRRG	NM_001438.2	human	genbank	58_37c	-1	validated	missense	c.136	p.P46T	1.000	NULL	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
FBXO6	26270	genome.wustl.edu	37	1	11732060	11732060	+	Silent	SNP	G	G	A	rs144511138	by1000genomes	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	11732060	11732060	G	A	SNP	FBXO6	NM_018438.5	human	genbank	58_37c	+1	reviewed	silent	c.489	p.P163	0.001	HMMPfam_FBA,superfamily_Galactose-binding domain-like	HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like,superfamily_F-box domain	-	no_errors
GPRIN3	285513	genome.wustl.edu	37	4	90170752	90170767	+	Frame_Shift_Del	DEL	TGGTTTCTCAGGTTGC	TGGTTTCTCAGGTTGC	-	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	TGGTTTCTCAGGTTGC	TGGTTTCTCAGGTTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	4	90170752	90170767	TGGTTTCTCAGGTTGC	-	DEL	GPRIN3	NM_198281.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.510_495	p.Q166fs	0.000:0.001:0.000:0.002:0.000:0.001:0.001:0.010:0.007:0.000:0.000:0.000:0.000:0.000:0.014:0.010	NULL	NULL	-	no_errors
GSPT1	2935	genome.wustl.edu	37	16	11976892	11976892	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	16	11976892	11976892	G	A	SNP	GSPT1	NM_002094.3	human	genbank	58_37c	-1	validated	missense	c.1408	p.L470F	1.000	HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_PAM2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HDAC1	3065	genome.wustl.edu	37	1	32798618	32798618	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	32798618	32798618	G	A	SNP	HDAC1	NM_004964.2	human	genbank	58_37c	+1	reviewed	silent	c.1422	p.G474	1.000	NULL	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	-	no_errors
HEPACAM2	253012	genome.wustl.edu	37	7	92826860	92826860	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	92826860	92826860	G	C	SNP	HEPACAM2	NM_001039372.1	human	genbank	58_37c	-1	provisional	nonsense	c.1076	p.S359*	1.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
HLA-A	3105	genome.wustl.edu	37	6	29912029	29912029	+	Frame_Shift_Del	DEL	G	G	-	rs45576436	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	6	29912029	29912029	G	-	DEL	HLA-A	NM_002116.6	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.750	p.D251fs	1.000	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
IKZF2	22807	genome.wustl.edu	37	2	213872500	213872500	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	2	213872500	213872500	G	T	SNP	IKZF2	NM_016260.2	human	genbank	58_37c	-1	reviewed	missense	c.1165	p.P389T	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
IL6ST	3572	genome.wustl.edu	37	5	55251984	55251984	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	55251984	55251984	T	C	SNP	IL6ST	NM_002184.2	human	genbank	58_37c	-1	reviewed	missense	c.1136	p.N379S	0.022	HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Lep_receptor_Ig	-	no_errors
ISL1	3670	genome.wustl.edu	37	5	50687262	50687262	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	5	50687262	50687262	C	T	SNP	ISL1	NM_002202.2	human	genbank	58_37c	+1	reviewed	missense	c.920	p.A307V	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
KIAA0182	23199	genome.wustl.edu	37	16	85688513	85688513	+	Missense_Mutation	SNP	C	C	T	rs142161580	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	16	85688513	85688513	C	T	SNP	KIAA0182	NM_014615.2	human	genbank	58_37c	+1	validated	missense	c.713	p.P238L	0.987	NULL	NULL	-	no_errors
KRT81	3887	genome.wustl.edu	37	12	52681497	52681497	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	52681497	52681497	C	T	SNP	KRT81	NM_002281.3	human	genbank	58_37c	-1	reviewed	silent	c.909	p.E303	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRTAP10-7	386675	genome.wustl.edu	37	21	46020656	46020670	+	In_Frame_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	rs60739860	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	21	46020656	46020670	CTGCTGCGCCCCCAG	-	DEL	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	in_frame_del	c.135_149	p.PSCCA49in_frame_del	0.132:0.261:0.989:1.000:1.000:0.990:0.713:0.752:0.994:0.999:1.000:1.000:1.000:0.996:0.995	NULL	HMMPfam_Keratin_B2	-	no_errors
LPPR2	64748	genome.wustl.edu	37	19	11474496	11474496	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	19	11474496	11474496	G	C	SNP	LPPR2	NM_022737.2	human	genbank	58_37c	+1	validated	splice_site	c.947+1	e6+1	1.000	-	-	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47306022	47306022	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	47306022	47306022	A	T	SNP	MADD	NM_003682.3	human	genbank	58_37c	+1	reviewed	missense	c.2063	p.D688V	0.019	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
MAGEB4	4115	genome.wustl.edu	37	X	30260918	30260918	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	30260918	30260918	A	G	SNP	MAGEB4	NM_002367.3	human	genbank	58_37c	+1	reviewed	silent	c.666	p.E222	0.004	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MARK1	4139	genome.wustl.edu	37	1	220835233	220835233	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	220835233	220835233	A	G	SNP	MARK1	NM_018650.3	human	genbank	58_37c	+1	validated	missense	c.2113	p.S705G	1.000	superfamily_Kinase associated domain 1 KA1	HMMPfam_UBA,HMMSmart_SM00219,HMMPfam_KA1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00165,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Kinase associated domain 1 KA1	-	no_errors
MEPE	56955	genome.wustl.edu	37	4	88766794	88766794	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	4	88766794	88766794	C	T	SNP	MEPE	NM_020203.3	human	genbank	58_37c	+1	validated	silent	c.774	p.D258	0.985	NULL	HMMPfam_Osteoregulin	-	no_errors
MUC6	4588	genome.wustl.edu	37	11	1018368	1018368	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	1018368	1018368	G	T	SNP	MUC6	NM_005961.2	human	genbank	58_37c	-1	validated	nonsense	c.4433	p.S1478*	0.003	NULL	HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL	-	no_errors
OASL	8638	genome.wustl.edu	37	12	121461839	121461839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	121461839	121461839	C	T	SNP	OASL	NM_003733.2	human	genbank	58_37c	-1	validated	missense	c.1001	p.C334Y	1.000	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain	HMMPfam_ubiquitin,HMMSmart_SM00213,PatternScan_25A_SYNTH_1,PatternScan_25A_SYNTH_2,HMMPfam_OAS1_C,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
PLXNA3	55558	genome.wustl.edu	37	X	153695619	153695619	+	Silent	SNP	C	C	T	rs139270764	byFrequency	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	X	153695619	153695619	C	T	SNP	PLXNA3	NM_017514.3	human	genbank	58_37c	+1	reviewed	silent	c.3246	p.P1082	0.079	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold	-	no_errors
PREX2	80243	genome.wustl.edu	37	8	69031699	69031699	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	8	69031699	69031699	C	G	SNP	PREX2	NM_024870.2	human	genbank	58_37c	+1	validated	missense	c.3454	p.H1152D	1.000	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
PSMC6	5706	genome.wustl.edu	37	14	53184856	53184856	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	14	53184856	53184856	T	G	SNP	PSMC6	NM_002806.3	human	genbank	58_37c	+1	reviewed	nonsense	c.629	p.L210*	1.000	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ROBO4	54538	genome.wustl.edu	37	11	124757090	124757090	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	124757090	124757090	C	G	SNP	ROBO4	NM_019055.5	human	genbank	58_37c	-1	validated	missense	c.2218	p.A740P	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
ROD1	9991	genome.wustl.edu	37	9	115038244	115038244	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	9	115038244	115038244	C	T	SNP	ROD1	NM_005156.5	human	genbank	58_37c	-1	validated	silent	c.168	p.S56	0.051	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RPH3A	22895	genome.wustl.edu	37	12	113306329	113306329	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	12	113306329	113306329	C	A	SNP	RPH3A	NM_001143854.1	human	genbank	58_37c	+1	validated	missense	c.539	p.P180H	0.001	HMMPfam_RPH3A_effector	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
SAA1	6288	genome.wustl.edu	37	11	18288513	18288513	+	Missense_Mutation	SNP	G	G	A	rs139332456	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	18288513	18288513	G	A	SNP	SAA1	NM_000331.4	human	genbank	58_37c	+1	reviewed	missense	c.79	p.E27K	0.019	HMMPfam_SAA,HMMSmart_SM00197	HMMPfam_SAA,HMMSmart_SM00197,PatternScan_SAA	-	no_errors
STH	246744	genome.wustl.edu	37	17	44076959	44076959	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	17	44076959	44076959	G	T	SNP	STH	NM_001007532.2	human	genbank	58_37c	+1	validated	missense	c.314	p.C105F	0.000	NULL	NULL	-	no_errors
TBC1D21	161514	genome.wustl.edu	37	15	74177364	74177364	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	74177364	74177364	G	T	SNP	TBC1D21	NM_153356.1	human	genbank	58_37c	+1	provisional	nonsense	c.499	p.E167*	0.988	HMMSmart_TBC,superfamily_RabGAP_TBC	HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors
TMEM53	79639	genome.wustl.edu	37	1	45120323	45120323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	1	45120323	45120323	C	T	SNP	TMEM53	NM_024587.2	human	genbank	58_37c	-1	provisional	missense	c.742	p.V248M	0.002	HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases	HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases	-	no_errors
VLDLR	7436	genome.wustl.edu	37	9	2643294	2643294	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	9	2643294	2643294	G	A	SNP	VLDLR	NM_003383.3	human	genbank	58_37c	+1	reviewed	missense	c.583	p.A195T	0.019	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
VPS41	27072	genome.wustl.edu	37	7	38768370	38768370	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	38768370	38768370	T	C	SNP	VPS41	NM_014396.3	human	genbank	58_37c	-1	reviewed	missense	c.2281	p.K761E	1.000	NULL	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_WD40 repeat-like,superfamily_ARM repeat,superfamily_RING/U-box	-	no_errors
WDR72	256764	genome.wustl.edu	37	15	53908085	53908085	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	53908085	53908085	T	G	SNP	WDR72	NM_182758.2	human	genbank	58_37c	-1	validated	missense	c.2318	p.K773T	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WDR72	256764	genome.wustl.edu	37	15	54015098	54015098	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	15	54015098	54015098	G	A	SNP	WDR72	NM_182758.2	human	genbank	58_37c	-1	validated	missense	c.161	p.A54V	0.998	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
XRN1	54464	genome.wustl.edu	37	3	142123820	142123820	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	3	142123820	142123820	A	T	SNP	XRN1	NM_019001.3	human	genbank	58_37c	-1	validated	missense	c.1812	p.D604E	0.002	NULL	HMMPfam_XRN_N,superfamily_dsRNA-binding domain-like	-	no_errors
ZNF202	7753	genome.wustl.edu	37	11	123596728	123596728	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	11	123596728	123596728	T	A	SNP	ZNF202	NM_003455.2	human	genbank	58_37c	-1	validated	missense	c.1924	p.T642S	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF786	136051	genome.wustl.edu	37	7	148769113	148769113	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12X-01A-11D-A10Y-09	TCGA-C8-A12X-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f133a2e3-73a2-40b8-855f-e819e4d11630	8a015260-3f5f-4130-adb3-d15881d67e08	7	148769113	148769113	G	T	SNP	ZNF786	NM_152411.3	human	genbank	58_37c	-1	validated	silent	c.751	p.R251	0.004	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
