Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABTB2	0	genome.wustl.edu	37	11	34192619	34192619	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	34192619	34192619	C	T	SNP	ABTB2	NM_145804.1	human	genbank	58_37c	-1	provisional	splice_site	c.840-1	e5-1	1.000	-	-	-	no_errors
ADAMTS20	0	genome.wustl.edu	37	12	43823449	43823449	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	12	43823449	43823449	C	T	SNP	ADAMTS20	NM_025003.3	human	genbank	58_37c	-1	validated	missense	c.3460	p.A1154T	0.644	HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ASTN1	0	genome.wustl.edu	37	1	176863701	176863701	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	176863701	176863701	C	T	SNP	ASTN1	ENST00000450659	human	ensembl	58_37c	-1	known	missense	c.809	p.R270K	1.000	HMMSmart_SM00457	HMMSmart_SM00457,superfamily_Fibronectin type III	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AXIN2	0	genome.wustl.edu	37	17	63554225	63554225	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	63554225	63554225	C	G	SNP	AXIN2	NM_004655.3	human	genbank	58_37c	-1	reviewed	missense	c.514	p.D172H	1.000	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_DIX,HMMSmart_SM00021,HMMPfam_Axin_b-cat_bind,superfamily_Regulator of G-protein signaling RGS	-	no_errors
BMS1P4	0	genome.wustl.edu	37	10	75481226	75481226	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	10	75481226	75481226	C	T	SNP	BMS1P4	NR_026592.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
C15orf33	0	genome.wustl.edu	37	15	49659665	49659665	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	49659665	49659665	G	A	SNP	C15orf33	NM_152647.2	human	genbank	58_37c	-1	validated	silent	c.1251	p.L417	0.169	NULL	NULL	-	no_errors
C1orf161	0	genome.wustl.edu	37	1	116670894	116670894	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	116670894	116670894	G	C	SNP	C1orf161	NM_152367.2	human	genbank	58_37c	+1	validated	missense	c.789	p.M263I	0.997	NULL	NULL	-	no_errors
C1orf198	0	genome.wustl.edu	37	1	230979431	230979431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	230979431	230979431	C	T	SNP	C1orf198	NM_032800.2	human	genbank	58_37c	-1	validated	missense	c.596	p.R199Q	1.000	NULL	NULL	-	no_errors
C1orf226	0	genome.wustl.edu	37	1	162351892	162351892	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	162351892	162351892	G	A	SNP	C1orf226	NM_001085375.1	human	genbank	58_37c	+1	validated	silent	c.201	p.R67	0.999	NULL	NULL	-	no_errors
CAMK2A	0	genome.wustl.edu	37	5	149637130	149637130	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	149637130	149637130	C	T	SNP	CAMK2A	NM_015981.3	human	genbank	58_37c	-1	reviewed	missense	c.268	p.D90N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CATSPER2	0	genome.wustl.edu	37	15	43940189	43940189	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	43940189	43940189	T	A	SNP	CATSPER2	NM_172095.1	human	genbank	58_37c	-1	reviewed	missense	c.71	p.D24V	0.998	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
CBWD1	0	genome.wustl.edu	37	9	163985	163985	+	Silent	SNP	A	A	G	rs148402215	byFrequency	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	9	163985	163985	A	G	SNP	CBWD1	NM_018491.3	human	genbank	58_37c	-1	validated	silent	c.483	p.Y161	0.999	HMMPfam_cobW,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CD19	0	genome.wustl.edu	37	16	28948602	28948605	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	AGAG	AGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	28948602	28948605	AGAG	-	DEL	CD19	NM_001770.5	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1209_1212	p.E404fs	0.993:0.996:0.999:1.000	NULL	HMMSmart_IG,superfamily_SSF48726	-	no_errors
CD300LG	0	genome.wustl.edu	37	17	41939193	41939193	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	41939193	41939193	C	T	SNP	CD300LG	NM_145273.3	human	genbank	58_37c	+1	validated	nonsense	c.913	p.Q305*	0.008	NULL	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
CNTN6	0	genome.wustl.edu	37	3	1414111	1414111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	1414111	1414111	G	A	SNP	CNTN6	NM_014461.2	human	genbank	58_37c	+1	reviewed	missense	c.1621	p.V541I	0.000	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
CTCF	0	genome.wustl.edu	37	16	67662443	67662443	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	67662443	67662443	A	T	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	silent	c.1689	p.T563	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CYP11B1	0	genome.wustl.edu	37	8	143957771	143957771	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	143957771	143957771	G	A	SNP	CYP11B1	NM_000497.3	human	genbank	58_37c	-1	reviewed	silent	c.840	p.F280	0.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
D2HGDH	0	genome.wustl.edu	37	2	242707333	242707333	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	242707333	242707333	G	A	SNP	D2HGDH	ENST00000445308	human	ensembl	58_37c	+1	known	nonsense	c.911	p.W304*	1.000	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain	HMMPfam_FAD-oxidase_C,PatternScan_PA2_HIS,superfamily_FAD-linked oxidases C-terminal domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DAB2	0	genome.wustl.edu	37	5	39383284	39383284	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	39383284	39383284	G	A	SNP	DAB2	NM_001343.2	human	genbank	58_37c	-1	validated	silent	c.777	p.G259	1.000	NULL	PatternScan_PFKB_KINASES_1,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
DCDC5	0	genome.wustl.edu	37	11	30900183	30900193	+	Frame_Shift_Del	DEL	ATGTCTGTGGC	ATGTCTGTGGC	-	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	ATGTCTGTGGC	ATGTCTGTGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	30900183	30900193	ATGTCTGTGGC	-	DEL	DCDC5	XM_002343054.1	human	genbank	58_37c	-1	model	frame_shift_del	c.3011_3001	p.A1001fs	0.000:0.000:0.037:0.893:0.981:0.994:1.000:1.000:0.998:0.997:0.979	NULL	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)	-	no_errors
DNAH3	0	genome.wustl.edu	37	16	20976523	20976523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	20976523	20976523	C	T	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.8683	p.D2895N	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAJB1	0	genome.wustl.edu	37	19	14627556	14627556	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	14627556	14627556	G	T	SNP	DNAJB1	NM_006145.1	human	genbank	58_37c	-1	provisional	missense	c.514	p.L172I	0.998	superfamily_HSP40/DnaJ peptide-binding domain	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain,PatternScan_DNAJ_1	-	no_errors
ENSG00000198695	0	genome.wustl.edu	37	MT	14348	14348	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	MT	14348	14348	T	C	SNP	ENSG00000198695	ENST00000361681	human	ensembl	58_37c	-1	known	missense	c.326	p.Y109C	NULL	HMMPfam_Oxidored_q3	HMMPfam_Oxidored_q3	-	mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9838	9838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	MT	9838	9838	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.632	p.G211D	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000251705	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	Y	10037843	10037843	C	T	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000251705	0	genome.wustl.edu	37	Y	10037883	10037883	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	Y	10037883	10037883	G	A	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
EPOR	0	genome.wustl.edu	37	19	11489402	11489402	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	11489402	11489402	C	G	SNP	EPOR	NM_000121.3	human	genbank	58_37c	-1	reviewed	missense	c.880	p.E294Q	0.957	NULL	PatternScan_HEMATOPO_REC_L_F1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind	-	no_errors
ERCC4	0	genome.wustl.edu	37	16	14024573	14024573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	14024573	14024573	C	T	SNP	ERCC4	NM_005236.2	human	genbank	58_37c	+1	reviewed	missense	c.799	p.R267C	1.000	NULL	HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core	-	no_errors
EYA4	0	genome.wustl.edu	37	6	133783840	133783840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	133783840	133783840	G	A	SNP	EYA4	NM_004100.4	human	genbank	58_37c	+1	reviewed	missense	c.662	p.S221N	1.000	NULL	HMMPfam_Hydrolase	-	no_errors
F8	0	genome.wustl.edu	37	X	154124399	154124399	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	154124399	154124399	C	A	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	missense	c.6382	p.G2128W	1.000	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
FAM81B	0	genome.wustl.edu	37	5	94749730	94749730	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	94749730	94749730	A	G	SNP	FAM81B	NM_152548.2	human	genbank	58_37c	+1	validated	missense	c.373	p.I125V	0.719	NULL	NULL	-	no_errors
FANCG	0	genome.wustl.edu	37	9	35076497	35076497	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	9	35076497	35076497	T	C	SNP	FANCG	NM_004629.1	human	genbank	58_37c	-1	reviewed	silent	c.1008	p.S336	0.768	superfamily_TPR-like	HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
FBXO32	0	genome.wustl.edu	37	8	124526556	124526556	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	124526556	124526556	T	C	SNP	FBXO32	NM_058229.2	human	genbank	58_37c	-1	reviewed	silent	c.390	p.A130	1.000	NULL	superfamily_SSF81383	-	no_errors
FREM3	0	genome.wustl.edu	37	4	144617794	144617794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	144617794	144617794	G	A	SNP	FREM3	ENST00000329798	human	ensembl	58_37c	-1	known	silent	c.4035	p.V1345	0.997	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
GOPC	0	genome.wustl.edu	37	6	117894762	117894762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	117894762	117894762	C	T	SNP	GOPC	NM_020399.2	human	genbank	58_37c	-1	validated	missense	c.684	p.M228I	1.000	NULL	PatternScan_RCC1_2,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
GRIN2A	0	genome.wustl.edu	37	16	9857878	9857878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	9857878	9857878	C	T	SNP	GRIN2A	NM_000833.3	human	genbank	58_37c	-1	reviewed	missense	c.3523	p.E1175K	0.351	HMMPfam_NMDAR2_C	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HADH	0	genome.wustl.edu	37	4	108954346	108954346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	108954346	108954346	G	A	SNP	HADH	NM_005327.4	human	genbank	58_37c	+1	reviewed	missense	c.724	p.E242K	1.000	HMMPfam_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like	HMMPfam_3HCDH,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
HCFC1	0	genome.wustl.edu	37	X	153219201	153219201	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	153219201	153219201	C	T	SNP	HCFC1	NM_005334.2	human	genbank	58_37c	-1	reviewed	missense	c.4354	p.D1452N	0.969	NULL	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
IL18R1	0	genome.wustl.edu	37	2	102998106	102998106	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	102998106	102998106	C	G	SNP	IL18R1	NM_003855.2	human	genbank	58_37c	+1	reviewed	missense	c.652	p.L218V	0.549	superfamily_SSF48726	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
IL20	0	genome.wustl.edu	37	1	207039354	207039354	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	207039354	207039354	G	A	SNP	IL20	NM_018724.3	human	genbank	58_37c	+1	reviewed	missense	c.157	p.V53M	0.694	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10	superfamily_4_helix_cytokine,PatternScan_INTERLEUKIN_10,HMMPfam_IL10,HMMSmart_IL10	-	no_errors
INTS4L1	0	genome.wustl.edu	37	7	64645801	64645801	+	RNA	SNP	C	G	G	rs62455701	byCluster	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	64645801	64645801	C	G	SNP	INTS4L1	XR_079496.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
KCNQ3	0	genome.wustl.edu	37	8	133192479	133192479	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	133192479	133192479	G	A	SNP	KCNQ3	NM_004519.2	human	genbank	58_37c	-1	reviewed	silent	c.702	p.I234	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_SSF81324	-	no_errors
KCNQ4	0	genome.wustl.edu	37	1	41300696	41300696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	41300696	41300696	C	T	SNP	KCNQ4	ENST00000509682	human	ensembl	58_37c	+1	known	missense	c.1267	p.R423C	1.000	HMMPfam_KCNQ_channel	HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA1210	0	genome.wustl.edu	37	X	118215410	118215410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	118215410	118215410	C	T	SNP	KIAA1210	NM_020721.1	human	genbank	58_37c	-1	validated	missense	c.5012	p.R1671Q	0.000	NULL	NULL	-	no_errors
KIAA1543	0	genome.wustl.edu	37	19	7676908	7676908	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	7676908	7676908	C	T	SNP	KIAA1543	NM_001080429.2	human	genbank	58_37c	+1	validated	missense	c.1610	p.S537F	0.095	NULL	superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain	-	no_errors
KIAA2018	0	genome.wustl.edu	37	3	113375166	113375166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	113375166	113375166	C	T	SNP	KIAA2018	NM_001009899.2	human	genbank	58_37c	-1	validated	missense	c.5363	p.R1788H	1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
KIF23	0	genome.wustl.edu	37	15	69733225	69733225	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	69733225	69733225	G	C	SNP	KIF23	NM_138555.1	human	genbank	58_37c	+1	reviewed	missense	c.2186	p.W729S	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100287684	0	genome.wustl.edu	37	9	6834838	6834838	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	9	6834838	6834838	C	T	SNP	LOC100287684	XM_002342904.1	human	genbank	58_37c	-1	model	missense	c.640	p.D214N	1.000	NULL	NULL	-	no_errors
LOC340268	0	genome.wustl.edu	37	7	9766973	9766973	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	9766973	9766973	G	A	SNP	LOC340268	XR_041608.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.966	-	-	-	no_errors
LOC494141	0	genome.wustl.edu	37	11	18231188	18231189	+	RNA	INS	-	-	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	18231188	18231189	-	A	INS	LOC494141	NR_026541.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.326:0.345	-	-	-	pseudogene
LRP4	0	genome.wustl.edu	37	11	46920500	46920500	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	46920500	46920500	C	G	SNP	LRP4	NM_002334.3	human	genbank	58_37c	-1	reviewed	missense	c.631	p.D211H	1.000	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LRRIQ1	0	genome.wustl.edu	37	12	85438525	85438525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	12	85438525	85438525	C	T	SNP	LRRIQ1	NM_001079910.1	human	genbank	58_37c	+1	validated	missense	c.274	p.H92Y	0.587	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MMP14	0	genome.wustl.edu	37	14	23311622	23311622	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	23311622	23311622	C	G	SNP	MMP14	NM_004995.2	human	genbank	58_37c	+1	reviewed	missense	c.384	p.I128M	1.000	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"	"superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_ZINC_PROTEASE,HMMSmart_SM00235,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MPI	0	genome.wustl.edu	37	15	75188521	75188521	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	15	75188521	75188521	C	T	SNP	MPI	NM_002435.1	human	genbank	58_37c	+1	reviewed	silent	c.699	p.I233	0.068	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins,PatternScan_PMI_I_1,PatternScan_PMI_I_2	-	no_errors
MRPL3	0	genome.wustl.edu	37	3	131188558	131188558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	131188558	131188558	C	T	SNP	MRPL3	ENST00000511168	human	ensembl	58_37c	-1	known	missense	c.841	p.D281N	0.991	HMMPfam_Ribosomal_L3,superfamily_Translation proteins	HMMPfam_Ribosomal_L3,superfamily_Translation proteins,PatternScan_RIBOSOMAL_L3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MRPL53	0	genome.wustl.edu	37	2	74699368	74699368	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	74699368	74699368	G	A	SNP	MRPL53	NM_053050.3	human	genbank	58_37c	-1	reviewed	missense	c.217	p.R73C	1.000	NULL	HMMPfam_MRP_L53	-	no_errors
MRPS25	0	genome.wustl.edu	37	3	15094076	15094076	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	15094076	15094076	G	A	SNP	MRPS25	NM_022497.3	human	genbank	58_37c	-1	reviewed	nonsense	c.394	p.R132*	0.836	NULL	HMMPfam_L51_S25_CI-B8	-	no_errors
MRS2P2	0	genome.wustl.edu	37	12	72243194	72243194	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	12	72243194	72243194	C	T	SNP	MRS2P2	NR_024072.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
MVP	0	genome.wustl.edu	37	16	29853120	29853120	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	29853120	29853120	C	T	SNP	MVP	NM_005115.3	human	genbank	58_37c	+1	reviewed	silent	c.1395	p.N465	0.079	NULL	HMMPfam_Vault	-	no_errors
MYH13	0	genome.wustl.edu	37	17	10265677	10265677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	10265677	10265677	G	A	SNP	MYH13	NM_003802.2	human	genbank	58_37c	-1	validated	silent	c.348	p.Y116	0.997	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH8	0	genome.wustl.edu	37	17	10312639	10312639	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	17	10312639	10312639	C	A	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.1854	p.K618N	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NAMPT	0	genome.wustl.edu	37	7	105893591	105893591	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	105893591	105893591	C	G	SNP	NAMPT	NM_005746.2	human	genbank	58_37c	-1	reviewed	missense	c.1237	p.V413L	1.000	HMMPfam_NAPRTase	HMMPfam_NAPRTase	-	no_errors
NBPF10	0	genome.wustl.edu	37	1	145311931	145311931	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	145311931	145311931	C	T	SNP	NBPF10	NM_001039703.4	human	genbank	58_37c	+1	provisional	missense	c.1999	p.R667C	0.000	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NCALD	0	genome.wustl.edu	37	8	102704765	102704765	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	102704765	102704765	A	T	SNP	NCALD	ENST00000395919	human	ensembl	58_37c	-1	known	silent	c.534	p.S178	0.021	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_start_codon
NCR1	0	genome.wustl.edu	37	19	55420647	55420647	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	55420647	55420647	A	G	SNP	NCR1	NM_004829.5	human	genbank	58_37c	+1	validated	silent	c.399	p.E133	0.033	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
NCRNA00164	0	genome.wustl.edu	37	2	133015505	133015505	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	133015505	133015505	G	A	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.040	-	-	-	pseudogene
NIPBL	0	genome.wustl.edu	37	5	37020923	37020923	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	37020923	37020923	C	T	SNP	NIPBL	NM_133433.3	human	genbank	58_37c	+1	reviewed	nonsense	c.5272	p.R1758*	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NKAIN2	0	genome.wustl.edu	37	6	124604227	124604227	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	124604227	124604227	T	A	SNP	NKAIN2	NM_001040214.1	human	genbank	58_37c	+1	reviewed	missense	c.131	p.I44N	1.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors
NLGN4X	0	genome.wustl.edu	37	X	5811360	5811360	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	5811360	5811360	G	A	SNP	NLGN4X	NM_020742.2	human	genbank	58_37c	-1	reviewed	missense	c.1949	p.S650F	0.997	NULL	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases	-	no_errors
OR5P2	0	genome.wustl.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	7818383	7818384	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	NM_153444.1	human	genbank	58_37c	-1	provisional	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.001:0.001	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
P4HA3	0	genome.wustl.edu	37	11	73978162	73978162	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	11	73978162	73978162	C	T	SNP	P4HA3	ENST00000427714	human	ensembl	58_37c	-1	known	missense	c.1759	p.A587T	0.000	NULL	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc,HMMPfam_P4Ha_N,superfamily_SSF48452	-	no_errors
PCDHB3	0	genome.wustl.edu	37	5	140482555	140482555	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	140482555	140482555	C	A	SNP	PCDHB3	NM_018937.2	human	genbank	58_37c	+1	reviewed	missense	c.2322	p.F774L	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCLO	0	genome.wustl.edu	37	7	82544011	82544011	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	7	82544011	82544011	C	G	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	missense	c.13291	p.D4431H	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PDE4DIP	0	genome.wustl.edu	37	1	144952346	144952346	+	Missense_Mutation	SNP	G	G	A	rs150616778	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	144952346	144952346	G	A	SNP	PDE4DIP	NM_014644.4	human	genbank	58_37c	-1	validated	missense	c.373	p.R125W	0.257	NULL	HMMPfam_Microtub_assoc	-	no_errors
PDZD2	0	genome.wustl.edu	37	5	31799670	31799670	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	5	31799670	31799670	G	C	SNP	PDZD2	NM_178140.2	human	genbank	58_37c	+1	reviewed	missense	c.315	p.K105N	1.000	HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PIK3CB	0	genome.wustl.edu	37	3	138374293	138374293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	138374293	138374293	C	T	SNP	PIK3CB	NM_006219.1	human	genbank	58_37c	-1	provisional	missense	c.3151	p.E1051K	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPAPDC1B	0	genome.wustl.edu	37	8	38124737	38124737	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	38124737	38124737	C	G	SNP	PPAPDC1B	NM_001102560.1	human	genbank	58_37c	-1	validated	missense	c.511	p.E171Q	0.043	NULL	HMMPfam_PAP2,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	-	no_errors
PRG4	0	genome.wustl.edu	37	1	186280194	186280194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	186280194	186280194	C	T	SNP	PRG4	NM_005807.3	human	genbank	58_37c	+1	reviewed	silent	c.3528	p.F1176	0.005	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120	superfamily_Hemopexin-like domain,HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Somatomedin B domain	-	no_errors
PVRL4	0	genome.wustl.edu	37	1	161043062	161043062	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	161043062	161043062	C	G	SNP	PVRL4	NM_030916.2	human	genbank	58_37c	-1	validated	missense	c.1261	p.E421Q	1.000	NULL	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
RALGAPA1	0	genome.wustl.edu	37	14	36192403	36192403	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	36192403	36192403	A	T	SNP	RALGAPA1	NM_194301.2	human	genbank	58_37c	-1	provisional	nonsense	c.1934	p.L645*	1.000	NULL	HMMPfam_Rap_GAP,superfamily_SSF111347	-	no_errors
RASAL2	0	genome.wustl.edu	37	1	178408562	178408562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	178408562	178408562	G	A	SNP	RASAL2	NM_170692.2	human	genbank	58_37c	+1	reviewed	missense	c.626	p.R209H	1.000	HMMSmart_PH,superfamily_SSF50729	HMMPfam_C2,HMMSmart_C2,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729	-	no_errors
RBM12B	0	genome.wustl.edu	37	8	94747082	94747082	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	8	94747082	94747082	G	A	SNP	RBM12B	NM_203390.2	human	genbank	58_37c	-1	validated	silent	c.1557	p.Y519	0.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RBM6	0	genome.wustl.edu	37	3	50091779	50091779	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	50091779	50091779	C	G	SNP	RBM6	NM_005777.2	human	genbank	58_37c	+1	validated	missense	c.1644	p.N548K	0.672	NULL	HMMPfam_G-patch,HMMSmart_G_patch,HMMSmart_RRM,HMMSmart_ZnF_C2H2,superfamily_SSF54928	-	no_errors
RG9MTD1	0	genome.wustl.edu	37	3	101284455	101284455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	101284455	101284455	C	T	SNP	RG9MTD1	NM_017819.2	human	genbank	58_37c	+1	provisional	missense	c.830	p.S277F	0.978	HMMPfam_tRNA_m1G_MT	HMMPfam_tRNA_m1G_MT	-	no_errors
RMND5A	0	genome.wustl.edu	37	2	86993049	86993049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	86993049	86993049	C	A	SNP	RMND5A	NM_022780.3	human	genbank	58_37c	+1	validated	missense	c.756	p.H252Q	1.000	HMMSmart_SM00757	HMMSmart_SM00667,HMMSmart_SM00668,HMMSmart_SM00757,superfamily_RING/U-box	-	no_errors
RPGR	0	genome.wustl.edu	37	X	38156545	38156545	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	38156545	38156545	T	A	SNP	RPGR	NM_001034853.1	human	genbank	58_37c	-1	reviewed	missense	c.1406	p.E469V	0.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
SACS	0	genome.wustl.edu	37	13	23915127	23915127	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	13	23915127	23915127	G	C	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	missense	c.2888	p.S963C	1.000	NULL	HMMPfam_ubiquitin,superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase substrate binding subunit/domain	-	no_errors
SLC4A3	0	genome.wustl.edu	37	2	220501075	220501075	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	220501075	220501075	C	A	SNP	SLC4A3	NM_201574.2	human	genbank	58_37c	+1	validated	missense	c.2324	p.A775D	0.983	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
SMC4	0	genome.wustl.edu	37	3	160141276	160141276	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	3	160141276	160141276	G	C	SNP	SMC4	NM_001002800.1	human	genbank	58_37c	+1	validated	missense	c.2083	p.D695H	1.000	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_Prefoldin,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SRGAP2	0	genome.wustl.edu	37	1	206619542	206619542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	1	206619542	206619542	G	C	SNP	SRGAP2	NM_015326.2	human	genbank	58_37c	+1	validated	missense	c.1740	p.M580I	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TBX18	0	genome.wustl.edu	37	6	85466511	85466511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	6	85466511	85466511	G	A	SNP	TBX18	NM_001080508.1	human	genbank	58_37c	-1	provisional	missense	c.676	p.P226S	1.000	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TC2N	0	genome.wustl.edu	37	14	92268677	92268677	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	92268677	92268677	G	C	SNP	TC2N	NM_001128595.1	human	genbank	58_37c	-1	validated	missense	c.390	p.F130L	0.992	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
TET1	0	genome.wustl.edu	37	10	70333071	70333071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	10	70333071	70333071	G	A	SNP	TET1	NM_030625.2	human	genbank	58_37c	+1	validated	missense	c.976	p.V326I	0.985	NULL	HMMPfam_zf-CXXC	-	no_errors
TGM1	0	genome.wustl.edu	37	14	24729190	24729190	+	Missense_Mutation	SNP	C	C	T	rs121918725	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	14	24729190	24729190	C	T	SNP	TGM1	NM_000359.2	human	genbank	58_37c	-1	reviewed	missense	c.832	p.G278R	1.000	superfamily_SSF54001	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
TRIML1	0	genome.wustl.edu	37	4	189061035	189061035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	4	189061035	189061035	A	T	SNP	TRIML1	NM_178556.3	human	genbank	58_37c	+1	provisional	missense	c.323	p.D108V	0.005	NULL	HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TSC2	0	genome.wustl.edu	37	16	2134403	2134403	+	Silent	SNP	C	C	T	rs137854363	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	2134403	2134403	C	T	SNP	TSC2	NM_000548.3	human	genbank	58_37c	+1	reviewed	silent	c.4180	p.L1394	0.185	NULL	HMMPfam_Rap_GAP,superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
USP39	0	genome.wustl.edu	37	2	85848451	85848451	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	2	85848451	85848451	T	G	SNP	USP39	ENST00000491659	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	0.002	-	-	-	no_coding_region
VSIG4	0	genome.wustl.edu	37	X	65247938	65247938	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	X	65247938	65247938	G	A	SNP	VSIG4	ENST00000427538	human	ensembl	58_37c	-1	known	nonsense	c.490	p.Q164*	0.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZC3H18	0	genome.wustl.edu	37	16	88677721	88677726	+	In_Frame_Del	DEL	GAGCGG	GAGCGG	-	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	GAGCGG	GAGCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	16	88677721	88677726	GAGCGG	-	DEL	ZC3H18	NM_144604.3	human	genbank	58_37c	+1	validated	in_frame_del	c.1252_1257	p.RE421in_frame_del	0.887:0.897:0.856:0.913:0.898:0.644	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
ZNF44	0	genome.wustl.edu	37	19	12384085	12384094	+	Frame_Shift_Del	DEL	TCATGTGTCT	TCATGTGTCT	-	novel	unknown	TCGA-D8-A1JC-01A-11D-A13L-09	TCGA-D8-A1JC-10A-01D-A13O-09	TCATGTGTCT	TCATGTGTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	63a9d14f-d91a-47af-8ef6-8124193aa110	d6936adf-adbc-4cb1-b7cb-c7ef255864d1	19	12384085	12384094	TCATGTGTCT	-	DEL	ZNF44	NM_016264.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.985_976	p.R326fs	0.051:0.055:0.076:0.405:0.486:0.527:0.468:0.016:0.000:0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
